LOCUS       DANMGB010000001        69295 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.001, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000001 DANMGB010000000
VERSION     DANMGB010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 69295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69295
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.001"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            129..1244
                     /gene="asd"
                     /locus_tag="PXG19_000001"
     CDS             129..1244
                     /gene="asd"
                     /locus_tag="PXG19_000001"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL6065348.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
     gene            1354..2280
                     /locus_tag="PXG19_000002"
     CDS             1354..2280
                     /locus_tag="PXG19_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6065349.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(2347..3792)
                     /gene="pntB"
                     /locus_tag="PXG19_000003"
     CDS             complement(2347..3792)
                     /gene="pntB"
                     /locus_tag="PXG19_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL6065350.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(3807..5345)
                     /gene="pntA"
                     /locus_tag="PXG19_000004"
     CDS             complement(3807..5345)
                     /gene="pntA"
                     /locus_tag="PXG19_000004"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL6065351.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            5525..6241
                     /gene="trmJ"
                     /locus_tag="PXG19_000005"
     CDS             5525..6241
                     /gene="trmJ"
                     /locus_tag="PXG19_000005"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL6065352.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            complement(6328..8828)
                     /locus_tag="PXG19_000006"
                     /pseudo
     CDS             complement(6328..8828)
                     /locus_tag="PXG19_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(8923..10359)
                     /gene="glgA"
                     /locus_tag="PXG19_000007"
     CDS             complement(8923..10359)
                     /gene="glgA"
                     /locus_tag="PXG19_000007"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL6065353.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            complement(10482..11795)
                     /gene="glgC"
                     /locus_tag="PXG19_000008"
     CDS             complement(10482..11795)
                     /gene="glgC"
                     /locus_tag="PXG19_000008"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL6065354.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            complement(11788..13800)
                     /gene="glgX"
                     /locus_tag="PXG19_000009"
     CDS             complement(11788..13800)
                     /gene="glgX"
                     /locus_tag="PXG19_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL6065355.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            complement(13824..16046)
                     /gene="glgB"
                     /locus_tag="PXG19_000010"
     CDS             complement(13824..16046)
                     /gene="glgB"
                     /locus_tag="PXG19_000010"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL6065356.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            16334..17812
                     /gene="fruB"
                     /locus_tag="PXG19_000011"
     CDS             16334..17812
                     /gene="fruB"
                     /locus_tag="PXG19_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL6065357.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            17826..18770
                     /gene="fruK"
                     /locus_tag="PXG19_000012"
     CDS             17826..18770
                     /gene="fruK"
                     /locus_tag="PXG19_000012"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL6065358.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            18796..20460
                     /locus_tag="PXG19_000013"
     CDS             18796..20460
                     /locus_tag="PXG19_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6065359.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            20627..21145
                     /locus_tag="PXG19_000014"
     CDS             20627..21145
                     /locus_tag="PXG19_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL6065360.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(21298..22161)
                     /gene="rarD"
                     /locus_tag="PXG19_000015"
     CDS             complement(21298..22161)
                     /gene="rarD"
                     /locus_tag="PXG19_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6065361.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            22339..22923
                     /locus_tag="PXG19_000016"
     CDS             22339..22923
                     /locus_tag="PXG19_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL6065362.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            23005..23463
                     /locus_tag="PXG19_000017"
     CDS             23005..23463
                     /locus_tag="PXG19_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6065363.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            23460..24317
                     /locus_tag="PXG19_000018"
     CDS             23460..24317
                     /locus_tag="PXG19_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6065364.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(24432..24911)
                     /gene="ispF"
                     /locus_tag="PXG19_000019"
     CDS             complement(24432..24911)
                     /gene="ispF"
                     /locus_tag="PXG19_000019"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL6065365.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(24913..25596)
                     /gene="ispD"
                     /locus_tag="PXG19_000020"
     CDS             complement(24913..25596)
                     /gene="ispD"
                     /locus_tag="PXG19_000020"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL6065366.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(25614..25892)
                     /gene="ftsB"
                     /locus_tag="PXG19_000021"
     CDS             complement(25614..25892)
                     /gene="ftsB"
                     /locus_tag="PXG19_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL6065367.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
     gene            26167..27774
                     /gene="pckA"
                     /locus_tag="PXG19_000022"
     CDS             26167..27774
                     /gene="pckA"
                     /locus_tag="PXG19_000022"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL6065368.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            27867..28868
                     /gene="bioB"
                     /locus_tag="PXG19_000023"
     CDS             27867..28868
                     /gene="bioB"
                     /locus_tag="PXG19_000023"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL6065369.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            29028..29125
                     /gene="ffs"
                     /locus_tag="PXG19_000024"
     ncRNA           29028..29125
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXG19_000024"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            29160..29867
                     /gene="gloB"
                     /locus_tag="PXG19_000025"
     CDS             29160..29867
                     /gene="gloB"
                     /locus_tag="PXG19_000025"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL6065370.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            30026..30739
                     /gene="uppS"
                     /locus_tag="PXG19_000026"
     CDS             30026..30739
                     /gene="uppS"
                     /locus_tag="PXG19_000026"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL6065371.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            30763..31632
                     /locus_tag="PXG19_000027"
     CDS             30763..31632
                     /locus_tag="PXG19_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL6065372.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            31636..32946
                     /gene="rseP"
                     /locus_tag="PXG19_000028"
     CDS             31636..32946
                     /gene="rseP"
                     /locus_tag="PXG19_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL6065373.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            33061..35442
                     /gene="bamA"
                     /locus_tag="PXG19_000029"
     CDS             33061..35442
                     /gene="bamA"
                     /locus_tag="PXG19_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL6065374.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTENGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            35522..36313
                     /locus_tag="PXG19_000030"
     CDS             35522..36313
                     /locus_tag="PXG19_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL6065375.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            36313..37338
                     /gene="lpxD"
                     /locus_tag="PXG19_000031"
     CDS             36313..37338
                     /gene="lpxD"
                     /locus_tag="PXG19_000031"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL6065376.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            37367..37825
                     /gene="fabZ"
                     /locus_tag="PXG19_000032"
     CDS             37367..37825
                     /gene="fabZ"
                     /locus_tag="PXG19_000032"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL6065377.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            37859..38653
                     /gene="lpxA"
                     /locus_tag="PXG19_000033"
     CDS             37859..38653
                     /gene="lpxA"
                     /locus_tag="PXG19_000033"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL6065378.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(38691..40691)
                     /gene="mnmC"
                     /locus_tag="PXG19_000034"
     CDS             complement(38691..40691)
                     /gene="mnmC"
                     /locus_tag="PXG19_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL6065379.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(40916..42352)
                     /gene="trpCF"
                     /locus_tag="PXG19_000035"
     CDS             complement(40916..42352)
                     /gene="trpCF"
                     /locus_tag="PXG19_000035"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL6065380.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            42440..42751
                     /locus_tag="PXG19_000036"
     CDS             42440..42751
                     /locus_tag="PXG19_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL6065381.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            42905..43633
                     /gene="truC"
                     /locus_tag="PXG19_000037"
     CDS             42905..43633
                     /gene="truC"
                     /locus_tag="PXG19_000037"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL6065382.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            43651..43815
                     /locus_tag="PXG19_000038"
     CDS             43651..43815
                     /locus_tag="PXG19_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL6065383.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            43808..44284
                     /locus_tag="PXG19_000039"
     CDS             43808..44284
                     /locus_tag="PXG19_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065384.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(44321..45172)
                     /locus_tag="PXG19_000040"
     CDS             complement(44321..45172)
                     /locus_tag="PXG19_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL6065385.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            45233..46642
                     /locus_tag="PXG19_000041"
     CDS             45233..46642
                     /locus_tag="PXG19_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL6065386.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TSISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            46688..47038
                     /locus_tag="PXG19_000042"
     CDS             46688..47038
                     /locus_tag="PXG19_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6065387.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            47031..47354
                     /locus_tag="PXG19_000043"
     CDS             47031..47354
                     /locus_tag="PXG19_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6065388.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            47462..47941
                     /gene="smpB"
                     /locus_tag="PXG19_000044"
     CDS             47462..47941
                     /gene="smpB"
                     /locus_tag="PXG19_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL6065389.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            48144..49451
                     /gene="serS"
                     /locus_tag="PXG19_000045"
     CDS             48144..49451
                     /gene="serS"
                     /locus_tag="PXG19_000045"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL6065390.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(49510..49836)
                     /locus_tag="PXG19_000046"
     CDS             complement(49510..49836)
                     /locus_tag="PXG19_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065391.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(49829..50041)
                     /locus_tag="PXG19_000047"
     CDS             complement(49829..50041)
                     /locus_tag="PXG19_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065392.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            50228..52813
                     /gene="leuS"
                     /locus_tag="PXG19_000048"
     CDS             50228..52813
                     /gene="leuS"
                     /locus_tag="PXG19_000048"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL6065393.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTSVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            53013..53501
                     /locus_tag="PXG19_000049"
     CDS             53013..53501
                     /locus_tag="PXG19_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065394.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            53544..54569
                     /gene="holA"
                     /locus_tag="PXG19_000050"
     CDS             53544..54569
                     /gene="holA"
                     /locus_tag="PXG19_000050"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL6065395.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(54570..54755)
                     /gene="yacG"
                     /locus_tag="PXG19_000051"
     CDS             complement(54570..54755)
                     /gene="yacG"
                     /locus_tag="PXG19_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL6065396.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(54737..55372)
                     /gene="coaE"
                     /locus_tag="PXG19_000052"
     CDS             complement(54737..55372)
                     /gene="coaE"
                     /locus_tag="PXG19_000052"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL6065397.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(55408..56064)
                     /locus_tag="PXG19_000053"
     CDS             complement(55408..56064)
                     /locus_tag="PXG19_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL6065398.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(56067..57263)
                     /locus_tag="PXG19_000054"
     CDS             complement(56067..57263)
                     /locus_tag="PXG19_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL6065399.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(57260..57712)
                     /locus_tag="PXG19_000055"
     CDS             complement(57260..57712)
                     /locus_tag="PXG19_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL6065400.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(57733..58212)
                     /gene="ppdD"
                     /locus_tag="PXG19_000056"
     CDS             complement(57733..58212)
                     /gene="ppdD"
                     /locus_tag="PXG19_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL6065401.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            58393..59772
                     /gene="radA"
                     /locus_tag="PXG19_000057"
     CDS             58393..59772
                     /gene="radA"
                     /locus_tag="PXG19_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL6065402.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(59827..60057)
                     /locus_tag="PXG19_000058"
     CDS             complement(59827..60057)
                     /locus_tag="PXG19_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL6065403.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(60177..60671)
                     /gene="folA"
                     /locus_tag="PXG19_000059"
     CDS             complement(60177..60671)
                     /gene="folA"
                     /locus_tag="PXG19_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL6065404.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            60747..60902
                     /locus_tag="PXG19_000060"
     CDS             60747..60902
                     /locus_tag="PXG19_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL6065405.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            60899..61867
                     /gene="proB"
                     /locus_tag="PXG19_000061"
     CDS             60899..61867
                     /gene="proB"
                     /locus_tag="PXG19_000061"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6065406.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            61867..62631
                     /locus_tag="PXG19_000062"
     CDS             61867..62631
                     /locus_tag="PXG19_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL6065407.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            62634..63266
                     /gene="nth"
                     /locus_tag="PXG19_000063"
     CDS             62634..63266
                     /gene="nth"
                     /locus_tag="PXG19_000063"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL6065408.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            63463..64713
                     /locus_tag="PXG19_000064"
     CDS             63463..64713
                     /locus_tag="PXG19_000064"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL6065409.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(64814..65749)
                     /locus_tag="PXG19_000065"
     CDS             complement(64814..65749)
                     /locus_tag="PXG19_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL6065410.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(65878..66072)
                     /gene="iscX"
                     /locus_tag="PXG19_000066"
     CDS             complement(65878..66072)
                     /gene="iscX"
                     /locus_tag="PXG19_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL6065411.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(66072..66413)
                     /gene="fdx"
                     /locus_tag="PXG19_000067"
     CDS             complement(66072..66413)
                     /gene="fdx"
                     /locus_tag="PXG19_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL6065412.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(66432..66797)
                     /locus_tag="PXG19_000068"
     CDS             complement(66432..66797)
                     /locus_tag="PXG19_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL6065413.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(66807..68660)
                     /gene="hscA"
                     /locus_tag="PXG19_000069"
     CDS             complement(66807..68660)
                     /gene="hscA"
                     /locus_tag="PXG19_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL6065414.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
     gene            complement(68976..>69295)
                     /locus_tag="PXG19_000070"
     CDS             complement(68976..>69295)
                     /locus_tag="PXG19_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL6065415.1"
                     /translation="AKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIGNYIVDFVC
                     FSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAVLDTIFYEI
                     TRG"
BASE COUNT        20945 a        14867 c        13745 g        19738 t
ORIGIN      
        1 tgttttattt taacaatagc ggttaaattt tgtcaaaact ttgcaaatca ataaaaaaca
       61 ttgatttttg cactaaaatc ctgtatttat tcacaatctt tataacatca tttttaggag
      121 caaacacaat gcaaaatgta ggttttatcg gttggcgtgg tatggtcggt tcggtcttaa
      181 tggatcgtat ggttgaagaa aataacttcg ccaatatcaa ccctgttttt ttcactactt
      241 cacaagcggg tcaaaaagcc cctgtttttg gcggaaaaga tgccggcgaa ttaaaaaacg
      301 cctttgacat tgaagaatta aaaaaattag acattatcgt aacttgccaa ggtggtgatt
      361 atacaaatga agtctatcca aaattaaaag aaaccggttg gaacggctat tggattgacg
      421 cggcttctgc attacgtatg aaagacgatg ctattatcgt attagacccg gtgaaccaac
      481 atgtgatttc agaaggctta aaaaacggca ttaaaacatt tgtaggcgga aactgtaccg
      541 taagcctaat gctaatggct atcggtggtt tatttgagaa agatttagtc gagtgggttt
      601 ctgtagcaac ttaccaagcc gcttccggtg ccggtgcgaa aaatatgcgt gaattgcttt
      661 ctcaaatggg tgaattagaa gatagcgtaa aagctgaatt agcaaatcct gcctcttcta
      721 ttttagatat tgaacgtaaa gttacggcta aaatgcgtgc ggaagacttc ccaaccgaga
      781 acttcggtgc ggcattgggc ggtagcttaa ttccttggat tgataaatta ttaccggaaa
      841 ccgggcaaac taaagaagag tggaaaggtt atgcagaaac taataaaatt ttaggtttaa
      901 gcgataaccc aattccagtt gatggtttat gcgtgcgtat tggagcatta cgctgccaca
      961 gccaagcatt cacaattaag ctgaaaaaag atattccgtt agcggaaatc gagcaaatta
     1021 ttgctgccca caatgaatgg gtgaaagtaa ttccaaacga caaagaaacc acattgcgtg
     1081 aattgacccc ggcgaaagtg accggtacat tgagcgtgcc ggttggtcgc ttgcgtaaat
     1141 tagcgatggg tggagaatac ttagctgcat ttaccgtagg tgaccaatta ttatggggtg
     1201 cagcagagcc tgttcgccgc attttagttc aattaaccca ataattcgcc actgctctat
     1261 acaagcggtt ggattttgca aattttttgc agaatttgac cgcttgtttg ttataattat
     1321 tttcatcttt tttcactttt agatgaataa attatgaaac cgatttttct tgaaatccgc
     1381 catttgcgga cattaatcgc attaaaagag agcggtagcg tatctcttgc agcaaagcgt
     1441 gtccatttaa cacaatccgc actttcacac caaataaaat tactggaaga acagtatgat
     1501 cttacgctat ttgagcgaaa aagctcccct attcgcttta caccagctgg cgaacgttta
     1561 attaagttgg cctacgatat tttgcccaaa gtcattgagg ctgaattaga tttagcccga
     1621 gtgaaacaag gagaagtcgg agaggtacgt gttgcagtag aatgccatac ctgttttgat
     1681 tggctaatgc cggcaatgga tactttccgt caacattggc ctctagttga attagatatc
     1741 gtatcgggtt tccatactga tacggttggt ttgctattaa gccatcgtgc agatctggca
     1801 attgtcgctg aagaggaaga tagtgctggt attatataca aacctctctt ttcatatgaa
     1861 atggtagcta tttgctctaa agatcaccct cttgccacaa aagatgtatg ggaagctgaa
     1921 gattttaaag atgagacatt aattacctat ccagtacctg atgatatgct agatttactg
     1981 cgaaaaatat taggccctgc tggcatcaaa gttactcggc gtaatagtga gttaactatt
     2041 gctattattc agctagtagc aagtcggcga ggcattgctg cactacctta ttgggcggtt
     2101 aaaccatatt tagatagggg gtatgtggtg gcaagaaaaa taactcagca aggactatat
     2161 agcacccttt atggcgctat tcgagaagcc gatgctaccc tagcctactt agatgatttc
     2221 catgataccg taaaatcgca gagttttgcg actcttcccg gattgatggt attagagtaa
     2281 aaaattaaca atttatgtta gcctaagcac aaaaaagcga acttatgttc gcttttttat
     2341 ttaaatttaa tttaacgccc gtaaaatatc atcaacacgt tcttttgcat caccaaatag
     2401 catttgggta ttttctttaa agaacagtgg gttttgcaca ccggcgtagc ctactgccat
     2461 tgaacgtttg aacacgataa cattttgtgc tttccatact tcaagcaccg gcattccagc
     2521 aatagggctt gatgggtcgt ctaatgcagc agggtttacg gtatcgtttg caccgattac
     2581 caataccaca tcggtttctt caaaatcgtc attgatttcg tccatctcca gcactacatc
     2641 ataaggtact ttcgcttccg ccaataatac gttcatatgc cccggtaaac gccctgccac
     2701 agggtgaata ccaaaacgca cattcacgcc tttttcacgc aattttgcgg tgatttccgc
     2761 taccggatat tgtgcttgag ccactgccat accataaccc ggcgtgatga tcacagagct
     2821 tgcatttttc agcatttctg ccacttcttc ggctttcgtt tcacggtgtt caccgtattc
     2881 ttcatcacct ttgccagact gaacttcatt gccaaaacca ccggcaatca cgctaatgaa
     2941 tgagcggttc attgctttac acataatata agaaaggata gcacctgatg atcccactaa
     3001 tgcaccggtt acgattaata aatcgttgct tagcataaag cctgccgctg cggctgccca
     3061 acctgaataa gaattcagca ttgaaactac caccggcata tccgccccac caatagaaga
     3121 aactaagtgc cagccgaaga ctaacgcaat aattgtcata atcagcacag ggaagatatt
     3181 gtgcggatta tttaaaaaca cgatcatcaa aaaaacagaa acgataatgg ctgccaaatt
     3241 ccatttgtgt ttatgtggaa tattcagtgc tgcagaagag actttacgac caaataattt
     3301 accgcttagt ttaccaaagg caaccaatga accggagaag gttaccgcac caatgaaaat
     3361 acctaagaac acttccacat tgtggatatt ggcaagagtg gcttgttccg ctaaaaatgc
     3421 cgcttgtgca gtttcatcta aatttgcagg cattaatgca ttggtatgaa gtccgtagct
     3481 gttaaaacca accaataccg ctgctaaacc gacaaagctg tgtagaattg ccactaattc
     3541 aggcatttcg gtcatttcta cttttagggc ttttttcacc ccgatgaatc caccgattgc
     3601 cattgcgatt aagatccaaa tcgtgccatg tgattgcggg ccgaaaatgg ttgccactaa
     3661 agcaatcgcc atacccacaa tcccatacca acaacctgct ttggcggttt cgtgtttaga
     3721 aagaccggct aagctcataa taaagagaat agctgcaata atgtacgcag cagtcacaaa
     3781 tccaaaagac atagtttcgt ttctccttaa ccttttctaa acattgcaag catacgttgc
     3841 gttactttaa agccaccaaa aatattgatg ctggcaacca aaatcgcaat aaatgccaaa
     3901 atatcaataa agaaattacc ggtcggttgg gcaatttgta ataccgcacc tacgatgata
     3961 atccctgaaa tcgcatttgt taccgccatt aatggggtat gtagtgcgtg gctgacgttc
     4021 caaaccacat aataccctac cacacaagcg agaacgaata cggtaaaatg cgataaaaac
     4081 gctgccggag ccacagatgc aagccatagg aacagcacac ctgctgctgc catcacgcca
     4141 tatttcactc gagggtctgc aggtttttcc tcttttttga ccgcttgtgg tgcggctgct
     4201 tgtttttgca gttgggcaga tacttgaatc ggcggagccg gccaagttaa ttcgccgtca
     4261 cgcaccaccg ttacgccacg caacactaca tcatcaaaat taatctcaat ttgaccatct
     4321 ttatttggtg ctaacagttt gagtaaattc accaagttag taccataaag ttgcgaagat
     4381 tgcgttggta aacgtgcagg aaaatcggta tagccaatca ctttcacttg attatcggtc
     4441 accacaatct cgccggcttt ggtgtattca cagttaccac cggttgcagc ggctaaatca
     4501 acaatcactg aacccggttt cattgaatca accatctctt tagtgattaa acgaggagca
     4561 ggtttgcccg gaatggcagc ggtggtaata ataatatcca cctctttggc ttgctcggca
     4621 tataacgcca ttgcacgacg gttaaactct tccgacatca ctttcgcata gccgtcacct
     4681 gagccacctt cttcttcaaa atcaatttcg aggaaatcag cccccattga tttaacttgc
     4741 tcttttactt caggacgaga gtcaaaggca cgcacaatcg cccccaggct atttgccgcc
     4801 ccgattgcag ccaagccagc aacaccggct ccaattacca acacttttgc cggtggtact
     4861 ttacctgctg cggtaatttg cccagtaaag aagctaccaa aagcgtttgc cgcttcgatc
     4921 accgcacggt aacccgaaat atttgccatc gaacttaaag catcgagagc ttgggcacgg
     4981 gaaatacgag gcacagcgtc cattgccaac acattaattt tcttagactg caatttttcc
     5041 atcaattgtg gattttgtgc cggccaaata aagctgacta aggttacccc ttctttgatt
     5101 aactcaattt cagcttctgt cggcgcattc actttaaaaa taatgtctgc attccaaact
     5161 tcttgttgtg tgccgatatt tgcacctgca tttaaaaatg tattatcttc aaaactggct
     5221 ttaaaacctg cgtcttgttc cacaagtacg tcaaagccaa gttttttgat ctgctcaacg
     5281 gtttttggcg ttgccgccac tcgagtttca ccgtctaaca gctctcttgg tacaccaata
     5341 agcataaaga ctcctgtatg gttgttgtga ttaaaaacgc tctaaatgta ccactaaata
     5401 aaacaaatag gtaaaaaatt atgcccaatt aaaccgatta tttcccattt tttcaaattt
     5461 taagcaggct aaatttttgc tacactatta acaggctaaa tttaacaaaa aagaaacaaa
     5521 accaatgcag attctcaacc aaattcagat cattcttgtt gaaacttcac tcccggcaaa
     5581 tatcggttcc gcagcccgag caatgaaaac gatgggctta acccatttgc gattagtcgc
     5641 cccaaaacaa ccgcttgatg aacaagccga agcccttgct gctggggcaa aagatgtgtt
     5701 ggataacgct caatgctacg ccactttcga tgaagccatt gccgattgcc aactggtgat
     5761 cggcaccagt gccagacttc gccatttgca aaataccctg attgaaccaa gagactgtgg
     5821 tgaattagtg gtaaatcgaa ccaatcttgg caaagtggcg attgtatttg gacgtgagcg
     5881 agtggggcta accaacgaag aattattgaa atgccagtac catttgaatt tcccaaccaa
     5941 tcctgattat ggttctctga atttggcaat ggcagtacag ctcgcaagtt atgaaatccg
     6001 aatggcttat ttgcaaaatt ctggcgaaaa acaaccgctt gcagcagata aggattaccc
     6061 aaccgctcaa gccttagagc atttctttgc tcacaccgaa cgcttatata ccgaattagg
     6121 ctttatccgc aatgattcag tgatgctaaa actccgccgt ttataccaac gtgccgaact
     6181 ggaaactaat gagctgaatt tactgagggg aatgctcacg gcggtggaga aggcaaattg
     6241 acaagcggtt aatttttagt agaaatttgc aaaatccctg actaaaacaa aaacggtaag
     6301 attactctta ccgttttctc taaatcatta ttttaaattc aacagtttat ttgaactttc
     6361 aataatactg cccattgtag aatcgccttt taattgttct tcgctcatcg gttcgatatg
     6421 ccaaatattt ttcgcataat ccatcaccga gcggtctgag gagaaatagc ccatattggc
     6481 aatattgatg atggctgaac gtgtccaagc tttcttgtta cgataggctt gagccacttt
     6541 ttcttgagcc tccacatagc tacgataatc ggcacaggct tggtagtagt cacctgaatt
     6601 taagatcaaa tcttgatagc gatacggatc ttccggtgag aatttaccgt ttagaatttg
     6661 tgaaattgcc tcattcaatt cgctgtcttt ttcgtagtag tgatacggtg agtaaccgtt
     6721 gtggcgaagc tcttccacct gctctacttc attaccgaaa ataaagatgt tctctttacc
     6781 aacgtgatct aaaatttcga cattcgcacc gtctaatgta ccaatggtta aagcaccatt
     6841 gagggcaaat ttcatattag aggttccgga ggcctctgta cccgctaagg aaatttgctc
     6901 tgaaacatca gctgccggaa taatcatttg tgctaatgaa acaccgtagt tcggaataaa
     6961 caccacctta attaaatcat taatgcgagg gtcattattc accacatttg ccacatcatt
     7021 aatcaaacga atcacttttt tcgccgcata ataagcactt gccgctttcc ctgcgaagat
     7081 aaacacacga ggtgtccaat cagcagtcgg gtttttcaag atgcggttat aaagcgtgat
     7141 gatatgcaac acgttcattt gctggcgttt atacttgtga atacgcttaa cttgtacatc
     7201 aaaaatcgct tcaggattaa gtttaattcc ctgagtttct tcgacatatt tggctaagcg
     7261 acgtttgttt tctactttca ccgctgccac ctgtgcttgc acatcagcat catcaacaaa
     7321 cacgttgaat ttttccaatt cacttaaatc agtcagccac ttattgccga tacatttatc
     7381 taaaatatta gcaagccctg ggttggcaat tttgatccag cggcgaggtg tcaccccatt
     7441 agtcacatta gtaaaacgat ttgggtaaat acgggcaaaa tcggcaaaaa tagattcaac
     7501 cattaaatcc gagtgaattt tcgccacacc atttactttc gctgaggcga ctaccgcaag
     7561 ccacgccata cgcacacggc gatcgccttg ttcatcaatt aaggaaacac gagaaatcaa
     7621 atcgtgatct tccgggaatt ggctacgcac ttcctctaag aaatattcgt taatgtcgaa
     7681 aataatctct aaatggcgtg gtagcacacg ggctaacatt tctaccggcc aagtttctaa
     7741 cgcttcactc atcaaagtgt gattggtgta gaagaaaatt ttacgagtca tcgcccacgc
     7801 ttgttcccag ccatagcctt tttcgtcaat taaaatacgc attaactcag gcaccgcaag
     7861 ggttgggtgt gtgtcattta agtgagttgc cactttgtcg gctaaattca cacaagagcc
     7921 gaactccgct tcgtggcggc ggataatatc ttgtacagat gccgagcaaa ggaaatactc
     7981 ttggcgtaag cgtaattcac gaccgttata ggtagaatcg tccggataaa gcacacgaga
     8041 gacgttttcc gagctgtttt gtttaaccat tgctgcaaaa taatcgccac ggttaaaatc
     8101 agataagcca aaccctctac ccgatgcgtg tgcagaccat aaacgtaagc tgttagttga
     8161 ggtggtctca aagcccggga tcagttggtc gtgagcttga gcggtaattt cttcttccgg
     8221 ctgccatact acttttttgc cctcacgcca agttttaccg ccaaagcgta ccgggaaacg
     8281 cttacttgaa cgtagatatg gccacacaaa ttcattctct aaccattcat caggttgctc
     8341 aatttgctcc ccgttgcgga tttcttggcg gaacataccg tattcatatt gaataccgta
     8401 gccgattgcc ggaattttca ttgtggcaag gctgtccata tagcaggcgg ctaaacgccc
     8461 taagccaccg ttacctaagc ccggacgccc tcttcattga taatctcttc cagatcttgc
     8521 cctaactctt ttaacgcagc gccaataagc tcatacacac cttcagaaat cattgcgtta
     8581 ctgaacgtac gccccattaa aaattccatt gaaaggtaat aaacacggcg gctaccattt
     8641 gcaacctggc tacggcgggt ttgtaaccaa tcttcggtag ataaatcacg cactacacgt
     8701 aaggttgcat tgagccagtt acgcttactg gcatcacggg gttcgacccc taaagcgaac
     8761 accattttgt gcaaaatcgc atttttaaca tttttgatca tttctgggct taatgactgc
     8821 ctgctcattg agtaaattct cctaattttt aatattgcaa gcggtcgttt ttacaaaaaa
     8881 atccgcaaat tcgaccgctt gaaatgatgt tgtgaataca aattaaataa tttcgtggta
     8941 taaattttgg tactgttctg ccacttttgc ccaaccaaaa tcttgagcaa gggcattctg
     9001 gcgaacgctc gaccacaatt tttgtttctg ccataagctg attgcccgca tagctgcctc
     9061 taaaaacgca ggtgcatctg ggtaatcaaa tacaaatccg gtggcactgc ggttttcaat
     9121 gctctcttta tggctatcta ccaccgtatc agctaagcca ccggtacggc gaaccagcgg
     9181 taaagtgcca tatttcagcc cataaagttg agttaatccg cacggctcaa aacggcttgg
     9241 tactagaatc agatcaccac ctgcaataat ttggtgcgat aaagcctcgt cataaccgat
     9301 tttcacccca atttggttcg ggtatttgtg ttggaaataa cgtagcgcat tttctaaatc
     9361 tggcgatcca cttcccaata caataatctg taccttatgt tgcattaagg tatctatatt
     9421 ggcgagtaag aaatctgccc ccttctgctc agttaaacga gtcaccatta ccatcaataa
     9481 tgcttctttg tcttctggca aaccaaaaat tcgttggagt tccgctttat ttttggcttt
     9541 accgtgcata tagttcgcac gataattcac cacaatatgt gtatccgttt ccggattcca
     9601 cacctcagca tcgaccccgt ttaaaatgcc acgcaatcta ccttgatatt gacgggttgc
     9661 cagtaaacca tgcaagcctg caccggcaat ttcctcagta atttcacgag cataggtcgg
     9721 gctaacggta gtaatgcgat cagcaaaata caaacctgct ttgaggtaag aaatttcacc
     9781 gtaaaattct aagccttcgg cgtggaaaaa ttcccaaggt aagccaagct ctgctaaatg
     9841 gaaggcatta aagcgcccga tataggcaat attatgaata gtgaagagcg tttttacatt
     9901 gcttccccaa cttttaagat atgcacaagc aagccctgct tgccaatcgt gtgcgtgtaa
     9961 aacttgagcg gttccccacc aatgatccaa accttgggct aattgcgccc caatgtaacc
    10021 taataaagca aagcgtttat agttatccgg atagtcttga taattgctgt cgtggtaagg
    10081 gttaccatca cgcataaata aatgaggcgc atcgataacg taaacgccta agccattaaa
    10141 ataagcaaat cgaacagaga ctgttccggc aaaagtgccg atagtagcaa cttctaccgt
    10201 ttcccctaaa gtttgcgcga ctttcgggta ataaggaatt aacactctga catcattacc
    10261 agcttgctgt tgcgcaaatg gcaatgcccc cattacatca gctaaaccgc ctgttttaat
    10321 taaagggtac atttcagagc aaatatgtaa aactttcatt tttaaccgtt ttctatgtgt
    10381 aaaatagttg aaaaataaga ccgcttgaag cgctttaatc ataacaatac ttcgagcttg
    10441 cgacctcaaa tgacaaactc gaagcattat atcatctctt actaaattgt atatttaata
    10501 tccgaattag cttcttttcc cgctaattta tctaacattg actgtgtcac taatacaatg
    10561 ccatttttgc tgacacgaaa acgtttcgca tcttcttcgg catttacacc aatttctaag
    10621 ccatcaggaa ttacacaatg tctgtcaatc acagcgcgct taattacgca atttttaccg
    10681 atagtcacct gcggtaaaat cactgtgtgt tcaatcaccg actccgcttc aacgtgaaca
    10741 cggttaaata agaccgaatt actgatttcc gcatcggtaa tcacacaacc acccgcaatc
    10801 agtgagttat ctagggttct ggcacgcgca cgattataga aaaaacgtgc cggtgcagtt
    10861 tgttgcggac gaccgtgaat cggccaagat tcatcatata aatctaattc cggatcttca
    10921 gaaactaaat ccatatgggc agcccagtag ctgtcaatcg taccgacatc tcgccagtaa
    10981 attgccccac tggcattacg ccctttacaa gaacgttcaa atgggtgggc atatagcaca
    11041 ccttgctcta ctgcttttgg aataatatct ttaccgaaat catgtgaggt tcccggtgta
    11101 gaggcttctt tttccagcat ttcatataga taatctgcat taaatacata aatccccatt
    11161 gatgctagcg aggaatccgg ttttcccggc attgcaggtg gatcagctgg tttttcgacg
    11221 aactctttca ctttcagctt ttcattcacc gccattaccc caaactctgt tgcttgcgag
    11281 cgaggcactt cgatacaacc tacagtacat tttgcacctt gatcgacgtg atctttcagc
    11341 atttgagtgt agtccatttt atagatatga tcccctgcta aaatcaccac atattttggt
    11401 ctatagtgcg atttcatcat cgccatattt tgatacaccg catccgctgt gccacgatac
    11461 caagtgtttt catctagctg ttggcgtgcc ggtaacatat caatatattg gttacgttca
    11521 taaggtaaaa atgaccaacc acgttgtaaa tggcgcaaca aagagtgtgc tgcatattgg
    11581 gtaatcaccc cgatttttaa taaattcgag ttaatacaat ttgataacgc aaaatcaata
    11641 atacggcggc taccaccgaa atagactgcc ggttttgcac gtttatcggt taattcgtat
    11701 aggcgagaac ctcgtcctcc tgcaagaatt aatactaagg tatcgttggt taaatcttgt
    11761 cttgcaacaa gagccgttga ttcttggtta agcatattgt gtctccaatt tattagcgaa
    11821 cattacatca cttttttgaa gtacgcatac acccatatta ttgagcgtaa ccgcttgcgt
    11881 gtctgtcatc aaaatacctt gagcctgctc caacacaact ttccagttgc cttgtggcag
    11941 taaaaacggt tgaggttgtc gattagcatt gaataaaagc agccattctt cctgtaataa
    12001 aacgacaagc ccattatgtt gattatgcca atcgtcaata ttcattagct gagcagaagg
    12061 attcaaccat tgtaccgaat cctcttgcca ccaattattc tgcttggaaa gcaaagcgat
    12121 ttttttacgc aaccggatta aactacgaac ataatccagc cgtgtgtgat tcatattttc
    12181 ccaatctagc caagtgatct cattatcttg gcaataacta ttattgttac cttgttgact
    12241 atgtccgatt tcatcaccgg ctaaaagcat tggaacacca gccgataaaa agagcgtagc
    12301 aagcaaacta caagcggtga tttctctctg tttttttacc aattcatctg ctgtctgccc
    12361 ttcaacaccg tggttattgc tgtagttact attatgcccg tctcggtttt gttcaccatt
    12421 tgcccaatta tgtttttgct gatagctggt gagatcttgt aacgtaaacc catcgtgtgc
    12481 cgtaataaaa ttgatacttt ttgaaacgga atatttagta aacacatcat cacttcctgc
    12541 caatcgccgt gccaaaagcc cccaatcacc ttggttttgt aaccaaaaac ggcgtatatc
    12601 atcacgataa caatcattcc actgataaaa aggctcaggg aattgcccta attgataacc
    12661 ttctacacca atatcccaag gctcagcaat caacttaata tgtgttaatt tagaatggct
    12721 tttaagtgct gtgaaaaaat ctgctttttc agaaaaactc ggtgttctac ctagaattga
    12781 ggcaagatca aagcggaatc catcaatatg gcactcctcc acccaataga ttaagcaatc
    12841 gattgcccag cagagtatat aaggattgct caaatttaag gtattaccac agccagtcca
    12901 attttcgtat tcgccctgtt tatctagcca ataagctgta ttgtcaatgc ctctaaaact
    12961 tagcatcggc ccgtttttat cactctcagc tgtgtggtta aacacaatat ccataatcac
    13021 ttcgatatgt gcttgatgta atgtttttac gagctgttta aactctttaa gaggattttg
    13081 cttatctgct gctaaattcg gatcaatagc aaaattacct aatacattat agccccaata
    13141 attcacaagc ccttgtttct gcaaatgggt ttcatcaata tggtaagtaa cgggtagaag
    13201 ttctactgcg gtgattccta aggtttttaa atagtctatc gaaacagggt gagccaaacc
    13261 ggcaaaagtg cctcgaatgt cgcttggaat ctgaaagttc cgctgactaa aacctttcac
    13321 ctgcatttca taaataatag tctctgccca aggagtgaat aactggctat cattttccca
    13381 atcaaaatgc tcatcaatca cgatagactt aggtgcaaga gaggcattat cccgttcatc
    13441 gttccattta taccaagcgg ctgcctctgc actacttaaa tccggcttcc cttcaatcgc
    13501 tttagcgtaa ggatcagtca ataatttttg cggattaaat aacaaaccgg cttgttcatc
    13561 ttgtatgcct ttcaccctgt agccatattt tgtccctgct tgtacacctg ctacaaaaat
    13621 gtgccaagta tctccggaag aaaacatcgg aatacgggtt tcgtggtgat tttcatcaaa
    13681 aagacataac tcaatagcgg ttgcattttg cgaaacaatg gcaaaatttg tgccaaattc
    13741 acccgcttgt ctatcaagtt tattgcctaa aggaaaaggc ttacctctaa aatagtgcat
    13801 attatttttt atgtttcttt aagttatgtt ttgttttgtt ttgttttttt gtctgcggct
    13861 cttttgagga agatagtcga tagcggtggc aaagtaatgc tcaaggagta ggctttaccg
    13921 tgcgatgcaa ttaactcgct ggcaaatcgg tttgcattgc tgacattact accgcaataa
    13981 caagctaaat cagaattgag aatttcctga tattctgcca attcattcac cccaaaacgg
    14041 taattttcac gcacaatcgg ggtgaaatta ctcaccacaa tcaccgaatc gccatttttg
    14101 gctttacgct caaaagcaaa caccgaatta tcgtgatcgt ccaccactaa ccactcaaaa
    14161 ccttcaggat tgtaatcttg ctcaaacagt gcaggggttt gggtgtataa atggttaagg
    14221 gcttttaccc aacccaatac gcccttatgc cattcgcccc cttcttcccc gagtaaatac
    14281 caatctaagc tctcggcaaa attccactct ttaccttgag caaactcgtt gcccataaag
    14341 agcaattttt tgcccggata gccccacata tagccataat aggctcgtaa gttcgcaaat
    14401 ttttgccagc aatcccccgg cattttattc agcaatgaac ctttgccgtg aacaacttca
    14461 tcgtgtgaaa gcggtaacac aaactgttcg ctgtattggt aggtcatacc aaaagtcatt
    14521 aaattgtggt gataacggcg gtaaattgga tctttttgca tatagcgtaa agtgtcgttc
    14581 atccagccca tattccattt ataattaaag cccaaaccgc ctctttcagt tgagtgagac
    14641 actccggcaa aagaagtgga ctcctctgca atgctcgcac cgccttggct ttcgtctctc
    14701 aaaatattat tggtgtggcg taagaagtcg attgcctcta agttctcacg tccgccatat
    14761 ttatttggaa tccactcgcc gtctgaacgt gagtaatcac gataaatcat tgacgccacc
    14821 gcatccaccc gcaacgcatc aatcccaaaa cgctcaatcc aataaagtgc attaccagac
    14881 aaataattgc tcacctcatt tctgccgtag ctaaaaatta aggtattcca atctttgtgg
    14941 tagccctctt tcggatcgga atgttcgtat aaatgcgttc catcaaaata aaccaagccg
    15001 tgttcatcta ccggaaaatg ccccactacc cagtcaagaa tcacaccaat gcctttatcg
    15061 tgagcttttt ggataaagta actcaagccc tcaggcgtac caaaacggct ggttggcgaa
    15121 taaataccgg tggtttgata accccaagag ccatcaaacg gaaattcgga aataggcagc
    15181 aattcaatat gggtaaagcc catatctttc acataaggaa tgagttcatc ggcaagctct
    15241 tcatagctaa gccaataatt gttttcaatg ttgcgtcgcc aagagcctaa atgcacttca
    15301 taaatggaaa tcggtttatc gggagcattc gcattacggc aggttttctc ggctggcaca
    15361 atgcttggca agccggaaac aatagatgcg gtttctgggc ggaattggga ggcaaaggcg
    15421 taagggtcgg atttcaaccg tagcacgccg tttcgatcca acacttcaaa tttatagcac
    15481 tccccttttt tcacattcgg caggaaaata tcccaaatac cggaatcggg gtggaatcgc
    15541 attgaatgta ccaagccgtt ccagtggttg aaatccccaa ccacggaaac ccgctgagcg
    15601 ttcggcgccc agacgctaaa atgcacaccc ccaacttcat tttgtgtgac taaatgtgcg
    15661 cctaattttt cgtacgggcg aagttgtttt ccttccgcaa acaaccaatt atcaagctct
    15721 tgaatatggg ttttaaaacg gtaagggtct tctatatcca ccgttgaatc agggtattcc
    15781 accaacaagc ggtaagaaaa atctgttttt ttaccaatca gctctgcaat aaaaaagcct
    15841 ctatcatcaa tttttagcat tgatgacaca ggctttccgt ttaaatcgat cacttggcaa
    15901 gctatggcag aaggaagaaa taccctaata ataacgccgt tattgctagg gtgaatacct
    15961 aggtaggaga aaggatcatt acaagaaccc gaagaaagtc gctcaacaaa aaaagcatct
    16021 ttttcagaat aagtatagtc ttgcatcggc actccttgct taaagcgttt aatacttaaa
    16081 tttcaatagt tctcactcta tcactaaata gaaataaaag aagtggattt acgccatttt
    16141 ttgagctaaa tcacaaaata aaatcgtttt aatctttagt ttaaatcatc aaaccttaaa
    16201 ttttgtgaca tagatcacat tttgaaacat ttttatggat atttttagtt ggctataacg
    16261 gtttagcaaa atatagagta aactaaccat aacattacag tttaaaaatc aactttaaat
    16321 ccaaggagct aaaatgctta atttatcggc aaaaaacatc cgtttaaatg gttcagcaag
    16381 caacaaagaa gaagttatcc gttttgttgc cgccgaatta gtcgccaagg gcaatgtagc
    16441 agccggctat gaagtcggta tgcttaatcg tgaaacccaa acctctactt ttttaggtaa
    16501 cggaattgct attccccacg gcacgcttga tacccgtgat ttagtcaaag aaaccggcgt
    16561 gcaaattatc caacttccgc aaggcgtgga atggggcgaa ggcaacactg cttatgtagt
    16621 tatcgggatt gcggctaaat cggacgaaca cttaacctta ctccgtcaac tcaccactgt
    16681 attaagtgat gaagaggctg ctgccacatt agcgaaaacg caaaatttag atgaatttat
    16741 tgccgtatta agcggtaaga aaaaccttcc tgccttatct caagagctga tttctctgaa
    16801 tatcgaatct tcaagcccta tcactttatc agccattaac gccgcaaaac tacaagagca
    16861 aggctatgtt tcccaagcat tcatcagcga tgtggttgcc aacaaagcgt tacatttagg
    16921 caataatcta tttgtggtgg attccgccaa aggcaaccaa gctaacggta tcgctattgc
    16981 ccgtaatacg caaggtcaaa ccctactaac tgtggcagaa accgacaatg ctctacagcc
    17041 actattaact caattattaa aaccagaagt aagaagccag tttgctcatt tctctgcgga
    17101 gcaaatgctt ggtttattaa aaggcgaaag cgtagcttca acccctgtaa ccaatgtcga
    17161 agcgagtggc aaccaagtgg ttggcacatt caccattcgt aacgacaacg gcttacacgc
    17221 ccgcccggct gcggtgttag tacaaacggt gaaaccgttc tcctcaaaaa tcagcgttga
    17281 aaatttagac cgcaacactg caccggcaag tgcgaaaagt gcaatgaaag tagtagcact
    17341 aggggcaagc caagggcatc gtttacgctt tgtggcagag ggagaagacg cccaacaagc
    17401 gattgaggca ttacaacaag caattattaa cggcttaggc gaaagtgttt cattcgtacc
    17461 ggcggtggca gatacgattg aaagcattgc tgtttcagca attcctgcgg aagaaactgc
    17521 gactgctgtc gatgccaata cgaaagaagc aacttttgta attaaaaacg aacacggttt
    17581 acacgctcgc ccaagtgcgg tgttggtgaa tgaagtgaaa aaattcaacg ccaaaattga
    17641 agtgcaaaat gttgataaaa attcaccgct tgtaagtgcc aaaagcttaa tgaaaattgt
    17701 tgcccttggc gtaaccaaag gcacgacgct acgctttgtg gcaagcggtg atgatgccga
    17761 agtagcactt gcggcaatcg gtgctgcgat tgaagcaggt ttaggcgaat aagcgaggaa
    17821 tcattatgcg tattgcaacc gttaccctca accctgcctt tgatttagtc ggcaaacttc
    17881 aacgtattga aatcggcgaa gtgaacaccg tagaaaccct tggtttatac cctgccggca
    17941 aaggtattaa cgttgctaaa gttttagctg acttaggcac aaaactttcg gttaccggct
    18001 ttttaggcga agaaaatcaa ggcgatttcg taaatgcctt taaacacaat gatttggctg
    18061 atgaatttta ccgtattaac ggtaaaaccc gcattaatgt caaaatcact gaaaccgagg
    18121 ctgatgtaac tgatctgaac tttctcggct ttgaaatttc ggaaagcgat tgggaaaaat
    18181 tcgtcacatt atctcatcag tgggaaagca aatttgactt agttgcagtg tgtggatctc
    18241 tccctcgtgg cgtaacgccg gaaaaatttg cttcttggtt ggaatcttta caccgccaag
    18301 gcttaaaagt ggtgttagat accagcaatg cggctctcac cgccggctta accgctcacc
    18361 cttggttagt aaaaccaaac cgccgagagc tggaagtgct ggtcgggcat tcactcaact
    18421 caatcgaaga gattattagt gcagctaaac aattacgttc ccgtggtatt gaaaatgtaa
    18481 ttatatcaat gggcgaacaa ggctctcttt ggctaaatca cgaaggcgtg ttacaagccc
    18541 gcccaccacg ttgcgaaaat gtagttagca ctgtaggtgc tggtgattca atggttgcca
    18601 gcttgatcta cggcttatct caaggttgga gcaaagagca gaccttgcgt tttgcctcag
    18661 ctacttctgc tctagctgtt gttcaaagta acgttgggat tgcagaccgt gcggcgttag
    18721 acgatattat taaacaaacc gacattaccg tgatttcaga aaatcattaa acctcaatca
    18781 aaggaacaaa ccaatatgaa tatttctttt gtatttcctc aaacactagg caacgcacgc
    18841 cgtttcttag tgaatgaaat gttatctgcc gctgccaagc aacaaggaca caatgttgtg
    18901 gcggcaaacc aagctgattt tgtggtgtta ttcgataacg caattccaca agaagctgcc
    18961 ggcaagcaag gggcaatttt ggacttagaa caagcctttg ctcaacctga agccagtctc
    19021 aaacaagcgg tcgaaaatgc acaaactttt gcaaatgcta ccgcaaccac tgcggtttca
    19081 gcggtttcat ctggtgtgaa aaatatcgtt gctgttaccg cttgcccaac tggcgtggct
    19141 catactttta tgtctgcgga agcaatcgaa aattatgcca aagcacaggg ttggaacatc
    19201 aaggttgaaa cccgtggtca agtaggagca ggaaatccaa tttccgccga agaagtcgca
    19261 gcggcagatt tagtctttgt agctgccgat attgatgtcg atttggaaaa attcaaaggc
    19321 aagccgatgt atcgcacctc aaccggttta gcattgaaga aaaccactca agaatttgaa
    19381 aaagcctttg ctcaagcgaa aatttacgaa ggtggtgtgg caaaagcgga taatgctgaa
    19441 gctccaactt ctgagaaaaa agggttatat aaacacttga tgaccggtgt atcacatatg
    19501 ttaccgctgg tggtagcagg tggcttgctc atcgctattt cctttatgtt cggaattgaa
    19561 gcctttaaag atgaaaccat cgcaggcggc ttgccgaaag ccttaatgga tattggtggc
    19621 ggtgcggcat tccacttaat gattgcggta ttcgcaggct atgtagcgtt ctcaattgca
    19681 gaccgtccgg ggttagctgt cggtcttatc ggcggtatgc ttgctaccac cgcaggagca
    19741 gggattttag gtggtatcgt agccggtttc ttagccggtt ataccgtaaa attcttaaat
    19801 ggtgcgattc agctaccggc aagtttaacc tcacttaaac ctattttgat tttaccactc
    19861 ttaggctcag cgattgtcgg cttactgatg atttatgtca tcaacccacc ggtgaaagca
    19921 ttaatggatg ccttagtgga atggttaaac acaatggggc aaaccaatgc aattatttta
    19981 ggtattattc tcggtgcgat gatgtgtacc gatatgggtg gtccggtgaa taaagcggct
    20041 tatacctttg gtgtgggttt aattgcttca caacaatata tgccaatggc agcggtgatg
    20101 gcggcaggta tggttccacc aattggtatg gcgattgcga ccctgattgc tcgtagcaaa
    20161 ttcaacacca accaacgtga tgcaggtaaa gcttcattcg tgttaggttt atgctttatt
    20221 tcagaagggg cattaccgtt cgtggcggca gaccctgtgc gtgtaattgc cagctcaatc
    20281 ttaggcggtg caaccgccgg tgcaatttca atggcactag gcattaccct acaagcccca
    20341 cacggcggtt tattcgtgat tccattcgtt tcacaaccgt taatgtactt agctgctatt
    20401 gccatcggct cattagtcac cggcgtagtc tatgccgcta tcaaacaaaa agcagaataa
    20461 agcacaaaca caaatacaaa caaaaacgga gcgaaacgct ccgtttttat atcatattgg
    20521 tacttactga attctatttc atcgaaatat caagtctaaa atattatttt tgcgatcgag
    20581 atcgaaaaaa tcattttcat cactttacga ataatatcaa ctcgttatga ttttgctacg
    20641 aggagatact atgcagttta ttgaatttac cgatcctgat agtggaattt cttatcaata
    20701 cagtgaattt actattgcta atgtcgcatt tatcattaat ttctgctcag atgccgatgt
    20761 tatatcgact ttgtccgcat taggcaaaga tatcacaaac tatataaaca cctattcctg
    20821 ttgcacaatc aaatttatgg cgaaagagca tctagaaaat agcggttcta atattgacat
    20881 ttatgccccc gcagcgaatc atcagttcaa acgtaaagaa ataattgctt tacaagaaac
    20941 ccttgagcgt ttattatttg agcattatgt acgttttaca ccagaaagct atctcttcat
    21001 tgccgagaga gattcactta accgaatgta tcagcgtatg tgtgtgccac gatgtgattt
    21061 tatgcaatct ttccaagtgg tttatccctt gggcgttaat caagattgtt tcattttaat
    21121 tacgccaaaa ggaaatctaa aatgaatcaa caacgtccag tttccgttcg tttaaagcaa
    21181 gaaggcttaa tcgcttttaa gcaagcctat cagcgagcaa aaaaagcagg tctattgaaa
    21241 ccggtcaaat aatctttaaa ccgcttgctc tacaagcgat ttatttttcc ttaattatca
    21301 caccttgcta cgaaaactat cccaactcaa taatccaatc gaaaccagca aacagaccat
    21361 caaaatatag gaattggcat cgagtttttc gccgatggca aaagaaatca gcaacatcac
    21421 caacggttca acatagccca gtaaacctaa tacattaatc ggtaataaat tgctcgagag
    21481 gatataaaga ataaaagcac tgccacttac cagccccagc aatccgaggt agaaataaat
    21541 ttgcggattt tctgccacta ttggcgtcat ttccacttgg ctgagataat aaagtgcaac
    21601 gggtaatacc agtaacaact ccacaaaaaa agtagctaac gtgttgattt gaaaataacg
    21661 gcgaagggta atataaagcg gataacccaa cccagctacc caagtcgccc acgaaatcgt
    21721 gctgttaaaa aacaaactac tgccaacacc gatgactgcg aaaagtagag aaagccattt
    21781 caggcgggta aaatgttctt taaacaccat ttttcctaga gccaccgcca caatcggtaa
    21841 aagcaagtaa ccaaacgaca cctgcaacgc ctgcccgtga ttaggagccc ataaaaacag
    21901 ccaaagctgc acgccggtgt tgagagcaag gagcaaaatg accaatacaa gcggtggatt
    21961 ttgtcgaatt ttttgcaaaa gatccgcaaa agccgattgc tgtttaaaca atataatcgc
    22021 cagcaaaata aacggaatga ctaccactat ccgaaagccg aacatcgcct ctccctctaa
    22081 cgggcgaagc aatatcgcaa aatagtaaac tgctccaaac agcacattgg ctgcaagcga
    22141 agctaaaatt cctttgagca tttggctttc ctcttatcaa caatcaaaca acaagcggtt
    22201 gactttgaac aaaaatttac aaatcttatc tacgccccat agtatgaaaa aatttgtaag
    22261 taagctagct atattcgatt tttcccgata caatgctccc aatttttcac tcttttattt
    22321 atattatagg acttcataat gaaaaagatt ttttggattt tactgatcgc catgcttgct
    22381 gttggcggtt attctttaac aaaatacaac gatttaatgc gtgcagaaga agacatcaac
    22441 tccgtatggg gaaatgttga atcggcttac caacgccgtg cggatttaat tccaaactta
    22501 gtgaataccg taaaaggtca ggctaacttt gagaaagaaa ctttaacctc tgtgattgaa
    22561 gctcgtgcaa aagcaactgc ggtaaccatt gacccaagca atgcaactga agagcaaatg
    22621 gctaaattcc aagaagccca acaaggtgta aactctgctc tttcacgctt attggtttca
    22681 gttgagaaat accctgaatt aaaagcccac gaagcgtttt taaatctaca agctcaatta
    22741 gaaggtacgg aaaaccgcat taacgttgaa cgcaataact ttaacgaaaa agtgaaagag
    22801 tacaacaagc aagtgcgtga attcccgact aaattagcgg caatgattat gggctttaaa
    22861 gcaaaaccgc aatttaaatc tgaagcaggt tctgataaag caccaaccgt aaacttcaac
    22921 taattttagt ttcaatttat tcatattaaa agcaataagc tctttcaaat ccggtgctta
    22981 ttgctttatt tttaagggga acaaatggga ttattttctt ttctctccaa caaattaccg
    23041 atagatacgc aacgcattga acaagcaatt gccgatttag agcaaaaaac ctctgccgaa
    23101 ttgcgtgtgg tggtggaacg aaaagccaaa atcggcaaaa ccgacaacgc cgctatgttg
    23161 cgagcaagtg agcttttcga tgaattaaaa atgcgtgaaa cggctgaaca taacggtgtg
    23221 ttgatctacc tttcattcaa gcctcactac gctgcgatta ttggcgatga aggcattcat
    23281 caaaaagtcg ataacgattt ttggcaaaaa atctatgcca caatgtgttt ggactgccaa
    23341 caaggcgatt acacccaagc catttgtgat gcaatcaaaa tggtggaagc tccgctcgct
    23401 caccatttcc cttatcaggc tgatgataaa aacgagcttt caaacgaggt ggtagtcaaa
    23461 tgatgaaatc cctttgcaaa tttctatcta ttttcaaccg cttgttattg gtgtgcttgg
    23521 ctctgtttag cctaaatgcc acagcggtga cctacccaga gccgcctaat ccgttttatt
    23581 atattacgga ctacaccaaa aacaccttga gccaacaaga atggcggaca ttagaagatg
    23641 ccttaattgc taactgtgcc aagacaagtt cgcaaattgc cgtggtgatt attccaagca
    23701 cggaaggcga ggcagtttca acctatgctc ataccctgtt taacaaatgg ggaatcggac
    23761 ggagcaaaaa taacgagaac aatggtatat tgttattaat tgccaaaaat gatcgcaaac
    23821 tctttattgc caccggacgt gggcttgaag gagcgttacc tgatgcgatt gcatcgagca
    23881 ttatccgcaa tgacatcacg ccattcttca aacaagagca atatgcagcc ggtatcgccc
    23941 atggcttatc cgccattatg gcagccatta acggggaata tgccccttat gcaagttatg
    24001 gcgaagaaat gcaagaattt gatgacatag acggcttact ctttttcttg tttgccggca
    24061 ttgtgatttt cctaattttc cgcccacgag gaaacagtac ctatattagt cccagctcaa
    24121 tggatcaact aggacaaata ctaagagaaa gccaacgcag aggtgggggc tttggcggtg
    24181 gtctcggagg tggctttgat cgaggctcag gtggatttgg cggaggcttc ggtggtggtt
    24241 ttggcggaag cagaggcagt ggcgacagct tcggtggtgg ttcatcaggc ggtggaggcg
    24301 ctggaggaag ctggtagttt ccgcccaatt taaaacaata caagcggtca tatttctcaa
    24361 aaaaattgcg tatttttcgc taaacgcaca aaacgctaat gaaaataaga ccgcttcctc
    24421 acttctctaa gctatgccct ttttagtaac aatgctacgg cttcacaagc tatgccttca
    24481 cctcgcccgg taaaccctaa tttttctgtt gtagtggctt ttacattcac ttgtgatata
    24541 tcgcattgta gatcgtctgc gatcacctgt ctcattttat caatatgcgg tcgcatcttc
    24601 ggagcttgag caataatggt tacatcgacg ttaccgactt gatagccctg ttcttgcact
    24661 tgtcggtaag cttcaatcaa caaaccacga ctatcggcat ttttgtattg catatcagta
    24721 tcagggaata atttgccaat atcacctaaa gctgctgcgc caagcaacgc atctgttaaa
    24781 gcgtgcagcg ctacatctcc gtcactatgc gcaatgaagc ctgtatgata aggcacttca
    24841 accccagcaa tcatcagtgg tctatcttcg ccaaaagcgt gaacatcaaa accgtgtcca
    24901 atacgtatca ttttagttct ccaaattatg tgtaaggtaa aattccgcta aggctaaatc
    24961 ttcagggcga gtgattttga tattatcact tctacctgaa accaattgtg gctggtagcc
    25021 tgcaagctcc attgcagatg cttcgtctgt tacctgaagc ttattggcaa aagcagagga
    25081 taatgcttgt tttaatgctt gagcaggaaa aaattgtggg gttaaagcgt gccataaggt
    25141 tgagcgatct tctgtgtgtg cgattttcgt gccgtttgct cttttcatcg tatctaccgc
    25201 tggaatggcg agaatgccac cttgcggatc gttaatttgc aaaagtttat ctaaatctga
    25261 ccgcttgagg caagggcgag ccgcatcgtg aactaatgcc caagcatttt cagtgttgat
    25321 ttcctgtaag gcatttagca ctgaatctgc tctcgtttct cctccaaaaa caagttggat
    25381 cttaggggat tttaggagtt ccaatgtgga ataaaaaggg tcttttcttg ccaccgctac
    25441 aatcactttt tcaacatgag ggtgttcaag aaaaatagac actgtatgct ctaagatagt
    25501 cttacccttt aattgtaaat attgttttgg tttttctgct tgcatccggc taccaactcc
    25561 tgacgccgga attactgcaa taatttttcg cttcataata tatcaattat gtattatttg
    25621 ttttttggta caattcggta gaacatctcg ttctctttta ccatttctcg ttcaagtctt
    25681 gctctctctt caagtgcatc tacgccgttc tttaaatcgt aaatttcggc ttcaattagt
    25741 ttattgcgtg aagtaagctt tgtgttttct acttttaata aagcaatttc ttcttgcact
    25801 tcttgataat cactccaacc attttttcca aaccaaaagc tatattggaa aaagccgagt
    25861 aatagggcaa aaaaagtaat taataaacgc atttattttc tcttatatga aatagtaatg
    25921 aactaagcgg gttgatttta ccttgaattt gcaaaaaatt ctaaaaatct taccgcttgt
    25981 tacttaaaca ggcgatggat agtgctaaat gtattcgaaa aattgatata aaacaaacaa
    26041 atgcgtattt taaagcgatt tttttaaact aaatgtcaaa aatttgaagt atgtaacatt
    26101 ttttattttt caattttcgt ataatcaacc cagttttaaa tttataacta ttatgaggta
    26161 accactatgt taaatcgtat tgaacaagaa cttgcagact taggcattac aaatgtaaaa
    26221 gaaatcgtgc gtaaccctag ctatgagcaa ctgtttgaag aagagatgaa atcggatctt
    26281 aaaggttatg aaaaaggcgt cctaacaaat ttaggcgcag tagcggtaga taccggcatt
    26341 ttcacggggc gttcgccgaa agataaatat atcgtattag atgaaacgac aaaagatacc
    26401 gtctggtgga catctgatgc agctaaaaat gataataaac cgatgactca atctacttgg
    26461 caaagtttaa aaaccttagt gaccgatgag ttatctaata agcgtttatt tattattgat
    26521 gctttctgtg gtgcaagccc tgagcatcgc atcaatgtgc gtattattac ccaagttgcg
    26581 tggcaagctc actttgtgaa aaatatgttt attcgtccaa cagaagaaga attaaaagat
    26641 ttcaaaccgg attttgtggt aatgaacggt tcccaagtaa ctaacccgaa ctggaaagag
    26701 caaggcttaa attcagaaaa ctttgtggca tttaatatca cagaaggtgt tcagatcatt
    26761 ggcggtactt ggtacggtgg tgagatgaaa aaaggtatgt tctctatgat gaactacttc
    26821 ttaccattaa aaggtgtcgc ttcaatgcac tgttcagcca atgtgggcga agaaggtgat
    26881 gtggcggttt tctttggttt atcaggaacc ggtaaaacga cactatcaac cgatccgaaa
    26941 cgcaaattga ttggtgacga tgaacacggt tgggacgaaa acggcgtatt taactatgaa
    27001 ggtggttgct atgcgaaaac catcaacctt tctattgaaa acgagccgga tatttatcgt
    27061 gcaatccgcc gtgatgcgtt attagaaaac gtggttgtgc gtgaagatgg cactattgat
    27121 tttgatgata aatcaaaaac agaaaatacc cgtgtgagct atccgattta tcatattgat
    27181 aatattgccg tgccgtcaaa agcaggacac gctaaaaaag tgattttctt aacggcagat
    27241 gcattcggcg tattgccacc ggtgtctaaa ttaacgcctg aacaaactaa atactacttc
    27301 ttatcaggct ttaccgcaaa attagcaggt acagagcgtg gtattactga gccaacccca
    27361 actttctctg cttgtttcgg tgcggcgttc ttatcactcc acccgacaca atatgctgaa
    27421 gtgttagtga aacgtatgga agcagccggt gcggaagcct atttagtgaa taccggttgg
    27481 aacggcacag gtaaacgtat ttcgattaaa gatacacggg gtattattga tgccatctta
    27541 gacggctcaa ttgagaaagc ggaaatgagt acattaccaa tcttcaattt agcaattcca
    27601 actgcgttac cgggtgtaga aacccacatt ttagaccctc gtaacactta tgaagacaaa
    27661 gcacaatggc aagctaaagc agaagattta gctggcagat ttgtgaaaaa ctttgaaaaa
    27721 tatgcgacca acgaggaagg caaagcatta attgctgctg gtccgaagtt ataagttgta
    27781 attataagtt ataatcgcta aaaaattagt ttaggactaa accttgaatg aggtttagtc
    27841 cttttgtata aaggagaagt acaataatga caacattcca attaaggctg aaagccaaag
    27901 atgagcttac cccacaccca acagcacaat attggcgaaa atgccaagtg gaaggactat
    27961 ttgatctgcc gtttatggat ttagtgttta gagcggcaca agttcaccgt gaaaattttg
    28021 atgctaatgc gatccagctt tcaacgttac tctcaattaa aacaggaggc tgtccggaag
    28081 attgcgaata ttgcccccaa tctgcccgct atgatacggg aatagaaaag caaacaatgc
    28141 ttgatgtaga gacgattgta gaaaaagcta aaattgccaa agagcgtgga gcaagccgct
    28201 tttgtatggg ggctgcgtgg cgaggaccta ggcctaaaga tattaaagta gtctcagaaa
    28261 tcatcaatgc ggtgaaatca ttggggctag aaacctgtgg tactttcggt atgcttgaag
    28321 agggaatggc agaagaatta aagcaagcag ggctggatta ctacaaccat aatttagata
    28381 ccgaccctga acgctataac aaaattatcc atacccgaaa tcacgaagat cgaatggaca
    28441 ctttaggtaa agttcgcaat gccggcttga aagtttgctg tggcggtatt gtgggaatga
    28501 acgaaacccg ccccgagcga gcaggcctaa ttgcaagcct cgctaacctc gatcctcaac
    28561 ctgaaagcgt accgattaat cagttgatta aagtagaagg tacaccgctt accaatgccg
    28621 aagatttaga ctggacagaa tttgttcgta ccattgcggt agcaagaatt actatgcctc
    28681 aaagctttgt ccgactttct gctggcagaa ctactatgcc ggaggcaatg caagccctct
    28741 gttttatggc aggagcaaat tctattttct atggcgataa attacttact acagaaaatc
    28801 cggaagaaga tcatgatcgc caattaatgg ataaattaga tttatatccg ctacaatata
    28861 tagcctgagt gccaatgatt ttcgcctgaa tgaaaattaa agaatcaatc gttattttac
    28921 gcaaatttct aacataaaat aaccgcttgc aaaattcgtt cttgtcttat ttttaaattt
    28981 atctataatg tgaggcctta cgcaagcttg cgtaattcga tggggcgtta ttggttcctc
    29041 gcaatggtgt tcagcttact tgatcaggtt cggaagaaag cagtctgggt tgaaatttcc
    29101 gtgtgccgag ggaggctggt aatgccccac ccttttttca gttctatcag gagaacgtta
    29161 tgctccagat cacccccatt ccggcattaa aagataatta catttgggca atccgtaacg
    29221 ggcaagatgt gattattatt gatccatcag aacatcagcc agcattaaac tttattgcaa
    29281 aaaatgcgtt aaatttaacc gctatcttga ttacccataa tcaccacgac catactgatg
    29341 gggtgagtgg tattgttgag caatatccga atatccctgt ttatggtccg caagaagtgg
    29401 ctgaatttgc caatgtgatt gtctcgcctg aacaacatat cagcctgttt ggttatgatg
    29461 taaggattat tgaaagtggt gggcataccg cagggcatat cagttattta tttggctatg
    29521 attatctgtt ttgtggcgat gcgttattct ccggcggttg cgggcgggtt ttcaccggtg
    29581 attaccaagc ccaatttgat gcgttacaac gctttaaaaa tctgcctaac tcggttaaag
    29641 cctacccggc tcacgaatac accaagagca atttgaaatt tgcagaagcg gttctaccac
    29701 caagctgtgt attatcggaa tatcaagaac aggttgatct tttacgttcg caaaacaaac
    29761 cgactttgcc aaccactatt ggcttggaaa tgcaggtgaa cccgtttatg caagcggtcg
    29821 atttagccga atttattgca cttcgtcagc aaaaagacaa tttttaacct catatttcta
    29881 attaagcatt aaagcctctc actttaatgc tttttggtta aataaaacct ttgcaaacat
    29941 cgcttgtcaa ttccactctg gcttatccta tggtatagtt acgactattt ttagcttaat
    30001 ttattatttt agtgagtaaa attctgtgaa cttcgatcct caaaatatgc ctaagcacgt
    30061 tgccattatt atggatggca atggcagatg ggctaagcag aaaggaaaat tacgcatttt
    30121 tggtcatcag aatggtgtaa aggcagttcg ttctgcagtt agttttgcag caaagcatca
    30181 tatccaagtt ttaaccctct acgcatttag cagtgagaat tggagcagac cagaaactga
    30241 agtttcagct ttaatgtctc tgtttatgaa agctttagat tctgaagtta aacaattaca
    30301 taaaaataat attcgcttaa agattatagg cgataaatcc gcctttagcg aaaatttaca
    30361 aaaacgcatt gccgaatcgg aaaaattaac cgaaaacaat actgggctaa tcttaaacat
    30421 tgctgccaac tatggtggtt actgggatat tgttcaagct gctcaacaac tagcagtgca
    30481 cgttaaatct gaacaacttg ctgtggagca gattacacca gcattgtttc aacaacattt
    30541 agtgacagaa aaccagccgc aagtggattt attaattcga accagtggtg agcagcggat
    30601 cagcaatttt ctattatggc aaattgctta tgccgagctg ttttttagcc cggttttatg
    30661 gcctgatttt aatgatgagg cttttagtga tgcaatttat gcttatcagc aacgtgaacg
    30721 ccgattcggt ggttgttaat ataaaaagaa taaggaaata caatgcttaa agaacgtgta
    30781 ctttcagcga ttattatgat tattgccgtg ctggctgcca tattttggct ctcaccactt
    30841 cctttaactt tagtgttatc ggcaattgtt gtggctgcaa tgtgggaatg ggctcaattt
    30901 gccggcttta aacaccctgt gccacgtgca attgtggcaa tggtgacaat ctgcttatta
    30961 ctttttgcga tcgttgcgaa tactgattat atccgagcca cccgttttat tactgatgag
    31021 actaccccta tcctctttat tggctgtatt tggtggttaa ttgcccttgt cctagtggca
    31081 acttacccca actcggcaaa actgtgggaa aaatctgttg cagctaaatt cctatttgga
    31141 cttgctacct tagtgccgtt tttaattggc acgctcgcat tgcgtttcca taattatgca
    31201 tttgatccat accaaggaac ttatttattc ctttacgtct gtttattagt ttggggagct
    31261 gattcaggtg cttattttgc tggcagagcc tttggcaaaa gaaaacttgc cccaaaagta
    31321 tctccgggta aatcgtggga aggcgtaatt ggtggcgtac tcacctctag tttgattgcc
    31381 tttacctttt tacaacttac accggcaaat gtattcggca aagcattagc cactacccca
    31441 tttattttag tttcggtcgg tatggttgct atttcagtct taggcgattt ggcagaaagt
    31501 atgtttaaac gccaagcagg cattaaagac agtagccagt taattcctgg gcatggaggt
    31561 attttagatc gtattgatag tttaaccgct gccgttccgt tttttgctac attcttcttt
    31621 tttgtactat agaatatgac gtccatcatt gcatttttta ttttaatttg cgtactggtt
    31681 tttgtgcatg aatacgggca cttttgggct gctcgcaaat gcggggtaaa ggtgatccgt
    31741 ttttcgatcg gatttggtaa agtcttattt aagaaaaaag ataaacaagg aaccgaattt
    31801 gttttttcac ttattcctct gggcggctat gtacaaatgt ggaatgatga aacggatatc
    31861 aacgctccag ctcaacaagc tcttaacaca aaatctgtat tgcaacgtgc atttattatt
    31921 atagccggtc ctgctgcaaa ttttattttt gcgattttgg catactgggt cgtttttatt
    31981 gccggtattc caactgttaa acctgttatt ggggaaattt taccaaacac tatcgcctcc
    32041 caagcaagaa ttcctaccga attggaaatt acaaaaatcg gtcatcaatc tatccaagat
    32101 tgggaaagtg catctttagc actagttggt tttgtgggca ataaaaatgt accgttagag
    32161 ggaaatatca acggcaactc aacacaaaaa tatgaactcg atttatctaa ctggagtatt
    32221 gactcagcca aagaaaaccc attaaccgca ttaggtattc gccccaaaag tgcaaaagtc
    32281 accgctgaaa ttaaacaagt tgtcgaaaat tctcctgcaa gccaagtggg tattcaagca
    32341 ggtgatcgta ttcttcaaat taaccagcag ccatttaatt ggttcaattt agttgaactg
    32401 gtacaagcag gtaaacctat tgaacttaaa attgaacaac gaggtcagat taaagacctt
    32461 gtcgtccaac cagaaaaaaa agacgaacgc tatattatcg gggtaatacc aagttatgag
    32521 cctcttgcag ataaatatcg taccgaatta aaatatgata ttcttaccgc attttataaa
    32581 agtatcgaaa aagtgtggtc tcttacccaa accatactcc aatttatcgg taatttaata
    32641 agcggtgatt tgtccattaa aaatttaggt gggccaattt caatggcaaa aggagccggt
    32701 gcaacagctg aaatcggctt agtttattac cttagtttta tggctctaat cagtgtcaat
    32761 ttgggggtaa tgaacttatt tccactttta cccttagatg gtgggcaact tgttttattg
    32821 gctgttgaag caattcgtgg aaaagcatta tcagaaaaaa tacaactcaa attccaacaa
    32881 attggatttg cattcgtgct gagtttaatg ttattcgcct ttgccaacga tataattcac
    32941 ttttaacaag cggttaaaaa aggtgacttt tttgcaaaaa gcaccctgac atcaaaatcc
    33001 ataatatgga tttaaactat attcttaata attttgcaaa acgatcatag gataatttca
    33061 atgaaaaaat tattactttc ctctctttta attgcaaacg gtgtagttgc tgcacctttc
    33121 gtagtaaaag acattcgtgt tgaaggtgtg caacctacaa caggcgaatc tatcatttca
    33181 tctattccgg ttagagtagg tcaaacagca acggatactg acgtatctaa tgtcgtccgc
    33241 catctattca gccaacaacg ttttgcagat gttcgtgcaa cacgagaagg caatacgctt
    33301 gtcatcaaag tcgctgaaaa accgattatt ggcaaggtag agatcgaagg taaccaagcg
    33361 attcctaaag atgccttaga gcaaaattta aaggcaaact taattaacca aggtgaaatt
    33421 tttgatgctg ccaagcttga agcttttaaa gaaggactaa tcgaacatta tcactctacc
    33481 ggccgttatg aagccaaaat tgacacatct gtttcgaata acaccgaagg tggcgttaat
    33541 attaagttag cgattaatga aggtgaagtt gctaaagcca aaacaattaa gtttgaaggt
    33601 aataatgcct tctctgataa aaaattatta gaaaacttag atattcaacc tgatgtttct
    33661 tggtggaata tttttgaaag tagcaaattc gaacaaaccg cctatcaaaa agacttagaa
    33721 acattaagag atttttattt aaatcgtggc tatgcaaaat ttgctatcca agataccgat
    33781 gttcaattca atgataataa aacggaagtt gcattgacct ataaattaga tgaagggtca
    33841 cagtaccatg tcagtgaaat gcgcattatc ggtaatacag ccaatatgga tagccagctc
    33901 aacgccctac taaaagaatt caagcctggt caattattcc gtaaatcaga ccttacacaa
    33961 attgaagaag agattaaatc tattttaggg gacgcaggtt atggttcagc taaagtagat
    34021 atttatcctc aatttaatga agaaaataaa accgtaaaaa tcagttttgt tgtggatgcc
    34081 ggtcgtcgta tttatgttcg taaaatccgt tttgaaggta atggtgtcac tgcagattca
    34141 acattacgtc gtgaaatgcg ccaacaagaa ggtgcttggc tttccacaaa caaagcttct
    34201 ctaggtaaag ctcgtttaga aagaaccggt ttctatgaaa gtgttgatat gtcaatgcca
    34261 aatgtagaag gtacagccga tcaagttgat gtagtgtata aaattaaaga acgcaatacc
    34321 ggtagtatta actttggtat cgggtacggc acggaaaacg gtatcagcta tcaagcagga
    34381 attaaacaag ataatttctt aggtatgggg tcaactatca gtctaaatgg tacccgtaat
    34441 aactacggta ccagcgttaa cctaggctat accgaacctt actttactaa agatggtgta
    34501 agtttaggcg gtaatatttt ctatgaagat tatgataact cagacaatga ttcaatggct
    34561 tcatataaac gccaaaccta tggtattaac ggcacattag gcttcccggt aaatgaaaat
    34621 aactcatact acttaggttt aggctatacg cacgataaaa ttaaaaatgc agcacgtgag
    34681 tacactcgtg agaaatatgt aaaatcaatg aactttgagt tcgatccagc tgccgattat
    34741 tacaaaaaaa tcaaagctga tgattttgat ttttctctcg gttggaacta caacagcttg
    34801 aatagaggct atttcccgac tgaaggaact accgcaaaca ttggcggtaa aatcacaatt
    34861 ccaggctctg ataataaata ttaccgagtc agtgcagact ttagaaatta ttacccgtta
    34921 aaccgtgagc acaaatgggt aatttcaacg aaagctagca ttgcttatac taatggattt
    34981 ggtggtaaag aagttccgtt ctatcagctt tatactgccg gaggtattgg tacactaaga
    35041 ggtttctctt acggtgcagt agggcctcaa gcgatttact ataatacaaa atccggcaaa
    35101 tttgatagca tgaataatga tattatcggt ggtaatgcgt tagctgcggc aagcttggaa
    35161 ttaatcacac caacgccatt tgtgagcgaa aaatatcagc acaatgtaag aacctctctc
    35221 tttgttgatg ctgcaagtgc atggaataca aaatggaaga aagatgaata tacgaacttg
    35281 cctgactatg gtgatttcaa acgtttccgt gcttccgccg gtattgcatt ccaatggatg
    35341 tctccaatcg ggccattatc attctcttat gcgaaaccaa ttcgtaaata tgataatgat
    35401 gatattgaac aattccagtt caacattggt agttcattct aattaaccac aagcggttaa
    35461 taaatgtaaa aaatttgcaa cttagccgct tatttcaaaa ctgttcatac aaggaaaaca
    35521 aatgaaaaaa ttatttaaaa tgactggctt agccgtagct ttagcctcta caaccggaat
    35581 cgcgaatgct gcagatacta ttggtttcgt agatccaagc tatgtattac aaaaccaccc
    35641 tgtattatta gatgcttcgg caaaatttga taaattcatg aaagaaagcc aagaaaaatt
    35701 tgctgctgat gaaaaaaaat tagcagatga aaataaaacc ttaacggctg agcgcaataa
    35761 aattaatgaa gatgcgcaaa aattacaaaa tgaacaaaaa aatgtagaag cttctatcaa
    35821 gaaaaaagtg gcagcattag agaaagatgc gcctcgctta cgttcaaaag agattcaagc
    35881 acgtcaaaat gcgattcaaa aagaagcaaa cgcattccaa gctaaagtaa cagcaattca
    35941 aaaacgtgaa gctgattttg caaaaaaagc agaagccttc cagaaacgtg cagatgaatt
    36001 ccaaaaacgt attgaacaag cgaataaaga aaatggtggc attaacccac aagaagcgca
    36061 aaaacaagcg gttgatgaag taaatgcaac cattaaagag atcgcaaaat cgaaaggtta
    36121 cactttagta ttacaaccac aagtagcact ttatgctgaa gatgaaggta aagatattac
    36181 tgaagcagta cttgatgcta ttgttaaaaa acatccggaa attaaaatag aaaaacctgc
    36241 aactgaagct caaccagcta cagaaaaaga aaccaaagct gaagaaacta aaccagaaga
    36301 agcgaaaaaa taatggcaaa tttccgttta attgatttag cggagcatat cggcggtact
    36361 cttaggggta acgccgattt ggctattcaa agtattgctg ctttagataa agccgacagc
    36421 tcgcaaatta cctttatctc aaatgcaaaa tatcgggaaa atttgaccgc ttgcaatgct
    36481 ggagctatta tcgtcagccc ggcagatgta gaattttgcc gagcagatca aaatcttatc
    36541 atcgttgcca atccgtatgt tgcttatgct caactggctc aatatatgga ttctactccg
    36601 aaagcagcga gcgaaatcca cccaagtgcg gtgatttcac ctgaagctaa actgggtaat
    36661 aacgtatcgg taggggcaaa tgccgtgatt gaaagtggcg tagaattggg cgatgatgcc
    36721 gtgatcggtg caggctgttt tgtgggaaaa aacagtaaaa tcggggcaag aacccaactt
    36781 tgggcaaatg tttcggtgta ccacaatgta caaatcggag ctgattgctt gattcaatcc
    36841 tcaacggtta tcgggagtga tgggtttggc tatgcgaatg acaaagggca atggattaaa
    36901 atcccacaaa ccggtggtgt gattatcggt aatcgtgttg aaattggtgc ttgcacttgt
    36961 attgaccgag gtgcattaga tccaaccgta atcgaagata atgtgattat tgataacctt
    37021 tgccaaatcg cccataatgt acacattggt tttggcactg ccgttgccgg cggcgtcatt
    37081 atggcaggca gtctaaaagt tggtcgcttt tgccaaattg gtggagcaag tgttatcaac
    37141 ggtcatatgg aaatctgtga tggtgccata attaccggaa tgggtatggt tatgcgccca
    37201 attacagaaa aaggaattta ctcatcaggt attccattac aaaccaataa agaatggcga
    37261 aaaaccgcag cacttgtaat gaatattgat gaaatgaaca aacgcttaaa atcgttagaa
    37321 aaacgtttta acgattaatt ttattagagg tcttaaagtg acagaaatga caactgaaaa
    37381 tcgtgagcca aatattattg aagtaaccga aattatggat atgttaccgc atcgctaccc
    37441 tttcctgtta gttgatcgcg taaccgatta tgaagaaggg aaatggttaa aagccattaa
    37501 aaatgtaacc ttcaatgaac cttgttttac cgggcatttt cctggcgcac caatcttccc
    37561 aggagtattg attctggaag caatggctca agcaactggc gtattagccg ttgccactta
    37621 tggtaagtta agtgaagacg aactctacta ttttgccgca attgacaatg ctcgctttaa
    37681 gcgaccggtt gtgccgggcg atcaacttca acttgaggtt gaatttctta aagaagtacg
    37741 tggtattact aaatttaccg gtaaagcata cgttgatggc aaattagtct gtgaagcaga
    37801 tttaatgtgc gctcgccgta aataattcga tataagccca aactagaggg aacaaactat
    37861 gcgtctaatt gattcaacag caaaaattag cccgcttgcc atcattgaag aaggtgctga
    37921 aattggcgct cacgttgaaa ttggtccatt ttcagtcatc ggtaaagatg tcaaaatcgg
    37981 ggctagaacg aaaattcact caaatgttgt cattaacggc atgactgaaa ttggtgaaga
    38041 taaccatatt ttccaatttg ccagcattgg tgaaatcaac caagatctaa aataccaagg
    38101 tgaaccaacc aaagtggtga tcggtaatcg taaccgtatt cgtgaaagtg ttactattca
    38161 ccgaggtacg gtacaaggcg gtggcgtgac gaaaatcggt gatgataact tatttatgat
    38221 caacacccac atcgcacacg actgctctat cggtaaccgt tgtattatcg ccaataatgg
    38281 tacgctagca ggtcacgtta ccctagatga tttcgtgatt gtgggaggaa tgtccgccat
    38341 tcaccaattc gttgtgattg gttcacacgt tatgcttgga ggcggttcaa tggtcagcca
    38401 agacgtaccg ccttatgtca tggcacaagg taaccacgca cgcccatttg gtattaactt
    38461 tgaagggtta aaacgtcgtg gctttgataa accaactatg cacgctattc gcaaagtcta
    38521 taaactgatt tactccagcg gaaaaacatt ggaagagtgc ctagtagaaa ttgagcaaat
    38581 tgcagcaaca gaacctgcga ttgctatttt taaacaattc ttcaaacgtt ctacccgtgg
    38641 tattattcgt taataaacga aaccccgaaa tcaattcggg gtttgtttta tcaagcgacc
    38701 gtcgaacctt tcaacaattt tcgaatccaa gctcgatttg ggctaaggtt atgccaaata
    38761 tcctcactga ttggcacagg ctcattcaca atcaggcttg ctaacaattc ccctagaagt
    38821 ggtgcagtcg tcaaacctcg agaagacagg ccgtttacca tatacagatt ggtaaaaatt
    38881 tcagcatttt ctaccgcttg tttccgtctc aactggttgt ataaattggc atattggctt
    38941 ttttgctgct caaaatgatg cactgcccca accatcggta cacgatcacg aaacgccgca
    39001 cgaataccga ctttggcttt attttcagat aaatcaattc cttgcgtcca ctcacaaacg
    39061 gttacatttt gctgaagttt tgcaacattc tcccaatgct ccgataaact aaactcggtt
    39121 tctgcattat cccgaatatg gcttgctcca atgcaatgcg tgccataggc tgacattggc
    39181 gttaaataac catcataaca aagcacacac ttcagttttt gtaattcgct tgtagtcgga
    39241 atttggctca cttgccctcg taccggatac aacggaatgc cgttcgcttg gctaaattca
    39301 ttcaacgtat gtccatttgc cagcacaacc gcttgatgtc gaaccgtttc tcccctcgtc
    39361 tgccattgcc acattccatt agaaaaggtt aaatgctcaa ctttgtgatt cagtacaatc
    39421 ttcaaccctt tctgctccag ccaagtaaag ccatttctaa caagttgtac cggtgaaagc
    39481 caaccagctt gcggaataaa tgccccgctg tttggcacgc ttaaacctaa tttttcactt
    39541 aattctgcct gtgaacaaga ttttaataag gtgtcatcag ccgtctgctc caccattttt
    39601 tccagttttt tagccgtttt ctcgtcatag gcgtaaagca ctaccccgct taaattatgc
    39661 tcaaactcaa tgttggattt cagttgttgc aagcgttgca atgcataatc aaaactatgg
    39721 atataaaact gtacatttcg ctcgtcatca tcgcttaact gtgggtaaat cgccccttgt
    39781 aaatttcctg aagcatttat tgccaaggtt tcatctttgc aatacagcgt gacttgcttg
    39841 cctttttcta acagcgataa cgcaacgaag aaactcgcta ctccgccacc aataattgca
    39901 atgtcatcag cggtttcatt tttggcataa aaataggggt aattaggctc ggaaacttgg
    39961 ctatctaacg gtttctcgcc ccaaagcatt tctcgttttt tgccaaatcc tttgcgtttt
    40021 ttcactgcaa aacctgcggc ttccagccct cgtctgacca tacttgaagc ggtaaaagta
    40081 gcaaaactgc cgccattggc acttagtcga aacatttgca gatataactg ttcgttccac
    40141 atttctgggt ttttatcagg cgaaaagcca tctaaaaacc aagcgtcaat cgtgccgcta
    40201 taaagatcgc ctaattgggg taagttttca gcaatctcac cgaaccataa atctaaataa
    40261 acctgctcaa aatgataacg ttggcaacct atttggcgag gctgccaaca agcggttaaa
    40321 ttttcagata atgttgcaaa ttgcggatag cgttggtgaa tatcagctaa ttggctggcc
    40381 gtcagaggaa atttctcaaa tgagataaaa tagagtcgtt ttagtttact ttgcggaaat
    40441 gctgcccgaa actgttggaa tttgtcagca acggctaaaa aattcaagcc cgtgccaaag
    40501 ccggtttccg caataacaaa agcctctttc gggtgagatt gccacttttc ccacagttgg
    40561 ttaccttctt gaaacacata gtaactttcc gccaaaccat cttgggtaga aaaataaata
    40621 tcatcaaatt gctccgacac cggtgtatct gcatcattaa atgtaagtgt cgcaaaagtc
    40681 agtttaccca tcatatcccc ttaaaaacaa aacacggaaa accccaagat tttccgtgtt
    40741 tcaaccagtt caatagtacc aatgttagaa aatgttgctg gcaaaaataa cgatcatacc
    40801 aagtgcgcct acaaccgtta gcattgaata accaaaagta cccattttac aatcctcatt
    40861 gttaattatg attaaaacgg ctttattcta gcataatttc catcgctttg aatgcctatg
    40921 cttgaataat tttgccaaaa caagcggtca atttttgtaa atcttttacg cctttggcac
    40981 tttccacgcc agaatttaaa tctaacccga cacagccttg agcaagggct tgctcaatat
    41041 tctcagtgcc aataccacct gccaataacg ctttttgttt taaggtttct ggaatcaacg
    41101 cccaattaaa ggttttgcct gtgccgcctt gctgattgcc tactttgctg tctaatacat
    41161 aacgagcaat ctgtggatta tcgttaaatt ctagattttc aacctcaaca tcaaccgata
    41221 aggctttcca gatttgagtt ttactaccta atttctctgc cagttctgca atgtattgct
    41281 catcttccga gccgtgcaat tgaactgcaa ataactcaag ctgttttgcc attttttcca
    41341 caaattcgac cgcttgattt tggaacaccc ccacataacg caacggtgca ttcaccacca
    41401 attcttgggc ttggcgaagt gaaagctggc gaggcgagcc ttcggcaaaa attaaaccgc
    41461 catataatgc cccttgctca taaaccgctt tcacatcttg cacacgggtt aagccacaca
    41521 ctttgttttc accaaaaatc accgcccgca ccgcattatt gagatcggca cttcccatta
    41581 aactgctgcc gattaaaaaa gcatgaacat acggcttaat gtttttcact tgctggtgat
    41641 cgttaatacc cgattctgaa atcaaacaga catcagccga aatttgggct tggtattttt
    41701 ccaccaaacg cacaatgcgg ttcatatcaa tcgtgagcgt gtgcaaatca cggttattaa
    41761 cgccaattac cttcgcccct aaggctaagg cacgttcaaa ttccgcctcc gtgctggttt
    41821 cagtcaaaac gcccattcct aactcgtgag ccagtgtggc aagttcacgg taggtttcat
    41881 catttaccac cgataacatc aataaaatcg catcagcatt ataaaaacgg gcaaggtaaa
    41941 cctggtatgc cgaaatcata aaatctttac acaaaatcgg ctgtgtggtt tggcgtttga
    42001 cttgatcgat ataacggaaa tcgccttgaa aatattgctc atcggttaaa accgaaatcg
    42061 ccgcagcgta atttttatac acttgggcaa tactgtctaa atcgaactca gcacgaatta
    42121 acccttttga cggtgaagct tttttacatt ctaaaatata agctggttct tggtgtgtgc
    42181 ctttggcaag agccgcatag aaatcatggt cgctttttac aattttgtgc tgaaattcac
    42241 ttaacggaaa ggcttgctct ttttgtgcca cccaaatggc tttatcttgt acgatctttt
    42301 gtaaaatcgt cggttggttt ggttgagcgt tatcttgaac gatgttttgc atataaattc
    42361 ctagagcgaa atcggtttga atggtaaaat ctgcccttat ttttacccga aaaagtctca
    42421 tttcacaagc aaaactaaga tgaaatcaca agttatacag catttatctt atttagaaat
    42481 cgccctgaga gttaatcaac tttgggaggc gacaccacca agccctgaag ccttagccaa
    42541 tgagcaacct ttctgcgtgg aaaccttaac cccaacccaa tggctacaat ggatttttat
    42601 tcccagaatg cgggccattt tagatgcaaa tgccgattta cctcgcaatt ttgcaatcac
    42661 cccttattta gaagaggcat tgaaaaacga aggttattta caagcgattt gtgaaccgct
    42721 attaggtttg gaaaagttgt tgaaagatta acttctctct cagttctttt attaatctga
    42781 caaattcgtt gatagtgcca gcgtccacgc tggtactaat tttaacggtt aattaatcaa
    42841 aatttggcac aagcgaggac gcttgcgcca tcatagagat ttgataaatt atacttaatg
    42901 tattatgacc ttagatattt tataccaaga caactcgctt atcgccatca acaaacctgc
    42961 cggagtgttg gtgcatcgtt cttggttaga taaacacgaa acggtgtttg caatgcaaac
    43021 cctgagggat caaatcgggc aacacgtttt tccgattcac cgccttgacc gcccaacctc
    43081 aggtgtattg ctgtttgctc tcaacagcga aaccgcccga ataatgagcg agcagtttga
    43141 acaacaccta gtacaaaaaa cttatttggc ggtggtgcgt ggctatttac aaggttcggc
    43201 acaaattgat tatccgctca aagtgatttt agataaaatt gcggataaat tttctcagga
    43261 aaaagaggct caagcggcga ttactgatta taaaggctta gcaacggttg aaatgcctta
    43321 ccctgtcggc aagcaccaaa cctctcgtta tagtttggtt gaacttagcc ctaaaaccgg
    43381 gcggaaacat cagcttcgcc gccacctgaa acacctgttc cacccgatta tgggagacag
    43441 caaatatggc gacttacacc aaaaccgtgc tttagttgaa aaatcaggcg taagtcgttt
    43501 aatgttacac gcccataaat tgcaatttca gcacccgaaa aatttgcaaa aaatagagat
    43561 aattgcatcg cttgatgagc aatggcaacg cctctttgca ttttttgact ggaactttac
    43621 tcaatattat tagacaaaaa agaggattga atggataatt cacttttatc attgacacac
    43681 gagcaacaac aagccgcagt agaagaaatt caaaaactga tggcacaagg catcagtgcc
    43741 ggagaggcaa ttcaaattat tgctaatcaa ttacgtgaca aatatcaaat attggagaaa
    43801 tcaaacaatg aataaattat ggacagtgct tgccctaaca ataacttccc actatagctt
    43861 tgctgccgct gaaaaaatag tcactaaaga tttaccggca gaaggaaaac ctgcagtcgt
    43921 gctacaggtt tttgatgaaa gtgaaaaaat tgcaaaacct attaagggaa ataagctctt
    43981 tattagcaaa aaacaaacaa ggctttgctg gcacagtatt aatcttcctg tacaaaataa
    44041 agttactatt gcagaagctt tctatgcccc tgctgcaatg aaattagctt ctcccggctc
    44101 taaaattaat tcttctgcag acaagaaaaa tcatactatc attactgaaa taaaccttgc
    44161 aaataatcaa gtattaaatc gttgctgggg ttttgataaa actgaccctg tcggtaaata
    44221 caaaatggaa attcaaatta acgatcacat tttcaaaggt ttagaatttg aaattgtaaa
    44281 ataacctaaa agccacagag taacaccctg tggctttttg ctaaatcatt gtttttaaat
    44341 tggttaaatt gtgcagcaaa taatctttac tcttcacaaa ggctctcgcc tgttgccagt
    44401 tgctaaattg ttgctgagtg cattgattaa aacgtaccag cacttccaaa ctttcattgc
    44461 cgacacaaat aaaatcagct aataattggg ttaatttttc actgttttca ccatccattg
    44521 cagttgcaat tttctgctcc catttaaccg cttgtccgag caaataaccc cgctgggctt
    44581 tgcttaaatt actcaaccac atcccatccg cttttggcat tgcctcaacc aaagtaaata
    44641 agtcgcctag atttccttgc ttgatttcaa actccaattc acaaatcggc tcttcaccaa
    44701 aatgattttt aatgatgccc tgatctaacg ctacctcaat gtcagacatc cccacttgca
    44761 ccaaccaagt tttacgagtg aaatcggtgc tgaatatcgc ttgcaagctt tctgcaatct
    44821 gctctgaatt ttcaaacggc aactggtatt tttccactaa tgtttgaaaa tccggctggc
    44881 tattgggtaa agctaaatta tattccggac gaatatgcaa accgcctaca atttcccctt
    44941 gtgtttttaa cgtgatttca tattgttgat tcacagaacg cacccgcagc cccatttttt
    45001 gcgtggcaaa aaattgctcg ggcgtatcat aataggtgtt gcctaacaat tccgtttgat
    45061 gagcaagcac agggaatggc gaggtttgat tcaagtagtt ttccactaac gccacattct
    45121 gctgttccaa cattattttc agttcgattt ctgcttgttt ttggttttcc atttcacacg
    45181 cccctgcaac gttgtataat caagcggtta ttttatcaat aaattttgca aaatgttttc
    45241 aaaaattcac cataaactga ataactttgt ccagcgtgga ctcgacaacc atttacgcct
    45301 cgccgttacc ggcttaagcc gtagtggcaa aacggcattt attaccagct tggttgatca
    45361 gcttttgcat atcaacaaag gcggtaattc gcatttaaac ctgtttgcgc ctgcacgcca
    45421 cgggcaaatt ctatcggtaa aacgcgttga gcaaggggat ttaactattc cccgctttga
    45481 atatgataaa aaccgccaaa gccttgaaaa tcaaccacct caatggcctg aatccaccac
    45541 tagcattagc gaaattcgcc ttgcgattcg ctaccagcgg caacattctc tgctacgtca
    45601 tattaaagaa accggcacgc tttatttgga tattttcgat tacccgggcg aatggctgtt
    45661 agatttaccc ctgctctccc tttcctataa agaatggtcg caaacgcaac aaaccataca
    45721 taaagatgag cgtgcagagc ttgccacacc ttggttacaa gcggttaaaa aactcgatct
    45781 ttttgcaaaa accgatgaaa atttactggc agaattcagc caacaataca ccgattattt
    45841 gctcgcctgc aaagctcaag gaatgcaata tattcagccg gggcgatttg tgttgccaac
    45901 tgaaaatgcc aaaggtgcac cggtattcca attttttccg ttattagatt taagcgaagc
    45961 tgagtgggaa aagttggaac aaagcgacag aaacagtatt ttccataccc tcaaaaaacg
    46021 ctatgagcat taccagaaaa aaatcgtcaa accgttttat gaagattact tctctcaatt
    46081 tgaccgccaa gtgattttgg cagactgcct cacaccgtta aattatggct ataacgaatt
    46141 tatggaaatg aaattagggt tacagcaact gtttaaacat ttccattatg gcaatcgttc
    46201 gctatttcac cgtctgtttt cgtccaacat tgataaattg ctatttatcg caacaaaggc
    46261 agatcacatt actagcgacc aagtgccgaa tttggaaagc ctaatgcgac aattagtgca
    46321 agaaggggga agacacgcag aatttgatgg tatcgaaacc ggctatttag ccatttcctc
    46381 gattcaagca accgatgcgg tgaaagtgac tcagcaagat aaaatcatta aagcgataag
    46441 agggatccgt tccagcgata gaaaacaagt gacactctac cctggcagcg tgccaaatcg
    46501 catacccgat aaaaattact ggcaatttaa ccgttttgaa ttcgaccaat tcgagcccaa
    46561 gcaacttgat tatagccaag cgattccaca cttcagaatg gattcggtgc tacaattttt
    46621 attggcggat atgtttgagt aaaatcttgt tgcatatttc cattaaaggt ataaaatttt
    46681 atacattatg aatactgtaa tttcccaacg aaaaccaatt cactgggttg gatcaacctt
    46741 agatgatatt cgtgaatttc cggataacat taaaagagaa ctcggttttg atcttgattt
    46801 agttcagcaa ggcttattac cgagggattt taaagcgatg gcaaatttgg gttcaggcgt
    46861 aatggaaatt cgagtaaaag atccctcagg ggcttttcgc ttagtgtatt tagctaaatt
    46921 taaagatgca atttactgtt tacacgcttt ccaaaagaaa acgcaaaaaa cagcccctaa
    46981 agacattgct gtcattaaag cacgctatgc tgccgtaaag gagttagaaa atgaataata
    47041 ttgatactaa aattcgccat actacagaag ctcagggtaa tgtttttgaa gatcttggtt
    47101 tccctattga tgaagctcaa aaattgaaat ctgccagtca gcaactgatt gaaactaaac
    47161 tgatgctaat gaatgaaatg agcaactgga ttgataaaaa taatctcaaa caatcagaag
    47221 cggcttctat tctaggtgtt agccgccctc gaatttctga tatggtcaat ggcaagttag
    47281 aaaagtttac cctagatacc ttagtcactt ttgttgcaaa aaccggcaaa acaatccaat
    47341 tgcaattatc ctgatatttg caaaatttta ctcaaattca accgcttgtt gcttttatca
    47401 ttcactaaca aggttatttc aagtaaaatt gtgactaatt ttttattaat aaacacaaat
    47461 tatggcaaaa aaacctaaag ttgcatcaaa tacgattgcg ttaaataaac gtgccagaca
    47521 cgaatatttc attgaagatg aaattgaagc cggcttagag ctacagggct gggaagtcaa
    47581 agcattgcgt gccggaaaag gcaatatcag cgatagctat gtcatctttc gccacggcga
    47641 agccttctta ttcggggcaa tgattacgcc tttgaatatg gcatcaaccc atattgtcag
    47701 cgacccgacc cgcacccgca aacttctact gaataaacgt gagttagact cactgttcgg
    47761 taaagttaat cgtgaaggtt ataccattgt tgccacctca atgtattgga aaaatgcgtg
    47821 ggtgaaagta aaaatcggct tagccaaagg gaaaaaactg cacgataaac gtgaagatat
    47881 taaagaccgt gaatggcaag tggctaaaca gcgtattatg aaaaacgcca atcgtggcta
    47941 aatgaataat taccctctcc ccttgtggga gagggacaga aaaattgcgt tcagcaattt
    48001 ttcagggaaa gggggatttg taaaagttca aggaaaaaca acgcttgccc tctctctgaa
    48061 aaatatttct gaacgaaata tttttcggtc tctctcccat aaagggagag agtgaaacac
    48121 aaatttaaac taaggaacat acaatgatcg accaaaacct acttcgtacc aatttagaag
    48181 acgttgctac agctcttaaa atcaaacgta attttatttt agatgtagag cgagtaaaaa
    48241 cccttgaaga acagcgtaaa acgctacaag ttaaaaccga aaccttacaa gcagaacgca
    48301 acactcgctc caaaaacatc ggtgcggcaa aagctcgtgg cgaagatatt tcagctttat
    48361 tagccgaagt agattcaatg ggcaacgaat tagacacggc aaaagtagaa ttggataaag
    48421 tacaggcaga aatccgtgag ttgttgcttt ctgtgccaaa cttaccggca gatgaagtac
    48481 cactcggtaa agacgatagc gaaaacttag aagtattacg ttggggcgaa ccacgtcaat
    48541 tcgactttga agttcaagat cacgttaccc ttggcgaaaa cttaaacggt ttagattttg
    48601 ctgccggtgt aaaattaacc gccagccgtt ttgtggtaat gaaaggtaaa cttgcccgct
    48661 tacaccgtgc attatctcaa tttatgttgg atttacacac tgaacaacac ggctatgtgg
    48721 aaaccaatgt gccattttta gtcaatcacg acactctata cggcacaggt cagctaccaa
    48781 aatttggcga agatttattc catactcaac cattaacagg gcaagatcca aacgaggtgc
    48841 aacgcccatt cggtttgatt ccaaccgctg aagtgccagt aacgaactta gtgcgagatg
    48901 aaatcattga tgaagacagc ttaccactgc gttataccgc ccacacccct tgtttccgtg
    48961 cagaagccgg ttcttatggg cgtgatactc gtggtttaat tcgtatgcac caatttgaaa
    49021 aagtggaaat ggtgcaaatt gtcgcccctg aaaaatcaat ggaagcctta gaagaattaa
    49081 ccggtcacgc agaaaaagtc ttacagcttt taggcttgcc ataccgcaaa gtgctactct
    49141 gcactggtga tatgggcttt ggtgcagcaa aaacctacga cttagaagtt tggctaccgg
    49201 cacaaaacac ttaccgtgag atttcttctt gctcaaatat gtgggatttc caagcccgcc
    49261 gaatgtctgc acgttgtaaa gctaaaggcg acaagaaaac tcgcttggtt cacaccttaa
    49321 acggctcagg tttagcggtt ggtcgcacac tggtcgctgt gttagaaaac taccaaaatg
    49381 ccgatggctc tattactgtg cctgaggtgt taagacctta tatgggtggt ttggaagtaa
    49441 ttaccgctta agattaataa atgaaaccaa tctcagaaat ggggttggtt tttttaataa
    49501 atcttatccc taatcttttt caggataatt cataaaaatt tcagtaacta ctcggcggtt
    49561 ttgcactgta tctaaacgaa taggattttt cattctccct aaacgaaatg caataatggt
    49621 gacttttttc ggttcatcta ttttatctaa ttgatagaat accattattt cccgttgata
    49681 aaccgctcgc tttctgaaac gtaaatcctt gcgaaatgcg acacctgctt ttggataaaa
    49741 ctgtaaacca ttgatgatat tcgtttgagt atgctccgaa aataatccat agaaaataaa
    49801 ctctaataga ttatttttaa aatcaacact aaccatctaa ctgctcccaa gcagttaaat
    49861 ctcctcgtga taaacgttca gcaatatcag cataaaattg tttcggtact tcccttttta
    49921 cttggtattg agctgattgt tcttctaata aatgttcttc tatcatcttg atttcttctg
    49981 ttgtccactc ttcatcttct ttatgtacaa caaaatcggt atctacaatc acaatagaca
    50041 tacctagctc cttcaagtac tggttatata ttctgtattt tgcctgttct aaattcagct
    50101 gtctagcttt tctgttactc acaatttgca aatttttcat caaattccac cgcttgccat
    50161 tcaaaaaaag gcgtttttgc ggtatcctat cggcaatttt ttcagttaaa tttaaaggtt
    50221 aaattttatg caacagcagt ataacccaag tgagattgaa cctaaggttc agcgttattg
    50281 ggcagaaaat aaagttttta aagcagttaa agacgttacc aaagagaaat actattgcct
    50341 ttcaatgttg ccttatccgt caggtaagct acatatgggg cacgttcgta actacaccat
    50401 tggtgatgta gtgtctcgtt atcagcgtat gatcggtaaa aatgtattac agccgatggg
    50461 ttgggacgct ttcggtttac cggcggaagg tgctgcggtg aaaaataata ccgcaccggc
    50521 aaaatggact tacgaaaaca tcgaatatat gaaaggtcag cttaaaatgt tgggcttctc
    50581 ttatgactgg gatcgtgaag tcaccacttg ccgtccggaa tactacaaat gggagcaatg
    50641 gttcttcaca gaactttata aaaaaggctt agtgtataaa aaaacctcaa ccgtaaactg
    50701 gtgtccgaat gatgaaactg tgcttgccaa cgagcaagtt cacgaaggtt gttgctggcg
    50761 ttgtgacacc tcagtggaac agcgtgaaat tccacaatgg tttatcaaaa tcactgacta
    50821 tgctgaagaa ttactcaatc agttagataa tctcccacag tggccggatc aagtaaaaac
    50881 catgcaacgc aactggatcg gtcgttccga aggggtagaa atcaccttta aaattgccgg
    50941 ttcaaacgta gaattaccgg tttacactac ccgtccggat accttcttcg gcgtaagcta
    51001 tgtggcgatt gctgcggctc acccattagc agaattagct gcacaaaata acccggcatt
    51061 ggctgaattt atccgtgaag cgaaaaacac caaagtggca gaagcagaat tagccaccat
    51121 ggagaaaaaa ggaatggcaa ccggcttgtt cgccattcac ccgttaacag gaaaagaagt
    51181 accggtttgg gttgctaact ttgtgttaat gcactacggt acaggtgcgg taatggcggt
    51241 tccggctcac gatgagcgtg actttgaatt tgcacaaaaa tacgatttgc aaattaatca
    51301 ggtaattcaa ccgcttgatg gctcagagtg ggatttcagc aaagccgctt acaccgaaca
    51361 cggtaaatta atcaactctg ccgagtttga cggcttggaa tttgatgtgg ctttcactgc
    51421 gattgccgat aaattagagg caatgggtgt aggtaaacgc caagtgaatt tccgtctgcg
    51481 tgactggggt gtttctcgtc aacgttattg gggtgcacca atcccaatga tgaccacaga
    51541 agagggcgaa gtggttaccg ttccattaca agatttaccg gtgattctcc ctgaagatgt
    51601 ggtaatgaac ggcgtgcaaa gcccaatcaa agccgaccca gagtgggcga aaaccactta
    51661 caacggcaaa ccggcattgc gtgaaaccga taccttcgat acctttatgg agtcctcttg
    51721 gtattatgca cgttatactt gcccacaata tcacgaagga atgttagatt cagacgaggc
    51781 aaactactgg ctaccggtcg atcaatatat cggcggtatt gaacacgcca caatgcactt
    51841 gctctacttc cgtttcttcc ataaattgtt gcgtgatgcg ggtattttaa attcggacga
    51901 accggcgact aaactgttat gccaaggtat ggtgcttgcc gatgcgttct actacaccag
    51961 cccaactaac gagcgtattt gggtcagccc gacacaagtc accttagaac gtgatgagaa
    52021 aggtcgtatc atcaaagcaa ccgatccaca agggcgtgag ctggttcaca gcggtatgac
    52081 taaaatgtcg aaatcaaaga acaacggtat cgatccgcaa gaaatggtgg aaaaatatgg
    52141 tgctgacaca gttcgcttgt ttatgatgtt tgcctcccct gcggaaatga cattagaatg
    52201 gcaagaatcc ggcgttgaag gggcaaaacg tttcttaggt cgtgtttgga atttagttta
    52261 tagctatgcc caaaatccgg caacgactgc attagatgtg aatgccttag acaaggatca
    52321 aaaagaactt cgccgtgatg tacacaaaac gattgctaag gtgagtgatg atattggtcg
    52381 tcgtcaaacc ttcaatacag cgattgctgc ggtgatggaa ttgatgaaca agctcaccaa
    52441 agccccactt gaaaccgaac aagataaagc cgtaatggca gaagctttaa gtgcggtggt
    52501 gcgtatgctt tacccaatca cgccacatat ctgctttgag ttatggcaag tgttaggtaa
    52561 tgaacaaacc atcgattttg ccccttgggt acaagccgat gaatccgcaa tggtggaaga
    52621 tgaaaaatta gtggtagtac aagtcaacgg aaaagtgcgt ggcaaaatca ctgtttcagc
    52681 tactgctacg gaagatgaag ttaaagctat cgctaaagcc gatccaaacg ttgctaaatt
    52741 cttagatggt cagcagattg taaaagaaat ctacgttcca tttaaaatgt tgagctttgc
    52801 ggttaaggcg taacaaacac actctccctt atatgggaga gagaccgata aatatttcgt
    52861 gcagaaatat ttatcagaga gagggtacaa gcggttattt tcttggaaaa ttttgcaaaa
    52921 aatagccccc tctccctgct ttttcttcta aacgaagaaa aacctgtccc tctcccacaa
    52981 ggggagaggg gaataaacaa ggaaatctca ttatgattaa aaaactctct ctcatcgctg
    53041 tttttgctct taccgcctgc ggttggcact ttaaaaacaa tgaggtatta cctgaatcgt
    53101 tcagaacatt aacctttgaa agtgcagatc aacacagcga aatgtctcga attttacgca
    53161 atcagttaca actaagcgat gtaaaattag tgcctagcac ggctaatgtg gcaaaattac
    53221 gtttggtttc aacctcaaca gacagcaaag tggtttctgt gtttaaacaa gctcgtgaag
    53281 cagaaaaaat cttaacgcta aacgttgatg cgattgccga tattccaaat aaagggcaat
    53341 accctttaga agtttcggtt catcgtactt tctttgatga ctctcgtgca gctttggcaa
    53401 agtctgctga aaaagagatg attatgaaag atatgtatga acaagcctct cgccaattaa
    53461 ttatcaaaat ggcgggctta aaaaaagaac tctcaaaata atcattgtag gggcgaaata
    53521 tgtttcgccc attgtttatc tgtatgcaaa aaatctttcc ggaaacactt caattttcat
    53581 taaacaaagg actacagccc ttttatctat taacagggaa tgatctgcta ttggtgaatg
    53641 aaaccaaaga tgccattatt cacaccgccc gtctcaacgg ttttgatgaa aaaaaagaag
    53701 ttgaaatcaa aaacgatact aactgggaag aacttttcga agcagctcaa tcaatgggat
    53761 tgttttttgc acgccaaatt atggtgctga attttccgga ttcccccaca gcgacacagt
    53821 ttaaaaaact ggctgagctt tgtgccttta ttcatagtga tttgctcttt atcctgcact
    53881 tacctaaatt ttccaaaaca atggaaaaac aggcttggtt cacgcaaatt gagctaaatc
    53941 tcgtgcaaat taactgccaa acaccggaac ttagcaaact tccacaatgg gtcagtcatc
    54001 gagcaaaagc gatgaatttg caaattgaaa atgaagcaaa ccaactcctt tgttatagct
    54061 acgaaggcaa tctactggcg cttaaacagg cattacaact gctacaactc aatgcaactg
    54121 atggaaaaat cacgctgaca aaagcccaag aagtggttga acactccgcc caatttactc
    54181 catttcaatg gattgatgca ttatttgaag gaaaaatcca aagagctcaa cgcattttgt
    54241 accatctgca aaatgaagaa gtacaagcgg tcgttttatt aagaattgtg caaaaagagt
    54301 tgatgatttt actcgaaatc actcgcaacc caaccgcagt cgtttccagc gaacaatcac
    54361 tttttatcgg taatttacga acagaatttg accgcttgaa aatttggcaa aaccgcagac
    54421 ctttttacaa ccagatcact caacgactga cttaccaaaa actttacgcc ctaatccaac
    54481 aactggctga attagagcgt aaggtgaaac aagaatttag cgatgatatt tggcaagaat
    54541 tagagcgttt ttccgctcaa tttacctaac taatactttt ctaaatcttc gctaaacaac
    54601 tccgcttctt cactggcgat agagtgcttt tctgccgccc aatcgcctaa atcaataatt
    54661 tgacaacgct cgctacaaaa cgggcggtat ttactttctt tactccacac cacttctttt
    54721 tcacaagtcg ggcagtttac aatagtttct ggcattcttt ttcctttttt gctaatgcta
    54781 agtatttata atgtaaggct tgaacctgct ctttaattaa aagcaagccc tgttcaaatg
    54841 gcaagttatt ttcaatcaca tcatcagcat aacttaatct ttcttcacgg ctgacttggg
    54901 ctgccataat atttttaatg gtttcaattt tactgttatc acgtttggtt gctctttcca
    54961 gttggatttc aggagaaaca tcaacaacca atatacgatc acaatattcg gtgagcttat
    55021 tttcaattaa aagcggcacg acccaaatca cataacaagc ggtcgattct tgcaattttt
    55081 ttaccatttc ttctcgaatg gcggggtgaa gtaaattatt gagccacgtt ttttcctctt
    55141 cattgttaaa cacaatttgg cgaagtttag tgcgttctaa tgctttttca gcggttaaga
    55201 tctcttcacc aaaatgctct acaatcttgg ctaaaagcgg tgtacccggt tcaacaactt
    55261 ggcgagccac cacatcagca tcaattacct ctaccccaag agctgaaaat aaatcagaca
    55321 ctgtggtttt gccactgcct attccaccgg ttaagcctac aacgtaagtc ataaaaattg
    55381 attcctcaaa ataaaaacaa accaattcta gtaattaatc cctctgcttt caagcattag
    55441 caccagcaac atcgctgtgc taataaacgg aataaacgcc aattttgcta atttctgctt
    55501 tttcattagc caataagcca agtaataacc aatccctagc aggctggcgg ttaatatcaa
    55561 taagagcatt ttttcgagcc gaaagagtgg ggataacgca accaataaca acatatcgcc
    55621 cgagccaaat gcctcctttt taaacataag ctgtgaaacc aagccaatca acaggcaaaa
    55681 agcaagggta aaggtaaaag tttggtgttg gaaatcggct aaactctccc ataacaccaa
    55741 caaaaatata agcacgaggt agcgaatatc cgttaggtaa tagcacatat ccagcagtga
    55801 taaaaaacag agcagaataa aaatcgtgcc gataataggg ctttccgagc agagcataat
    55861 caatggaaaa aggagaaaaa atagatttgc cgatcggggt tgtttcggtt gtagcaccga
    55921 ttgagccaaa aactgttgct cggttaagcc aatattcact aatgaagttg tttcttggta
    55981 aatttggcga ttgactcgaa tggcaaatcg agggatctcc gctttgagcc aaaccgcaat
    56041 gaagagggaa aacagtatta acatcgctac tccaccaaag cccccatatc aaaaatcggt
    56101 aaatacagcc caacaataat agtgccgaca atcacgccca ttatcaacat tagcatcggt
    56161 tctaatagct gagacaaaat atcaatttgg taatctaatt tttgttggta catctcacta
    56221 atatgctcac acattttcgc cacattgcca cttttctccc caacctcaag catttgtgcc
    56281 atctcagcac caaacacatt cgggttgatc ccttgtgaaa atttgtagcc ttgttgtaac
    56341 aaattaagca tagtgccaat ttcttgctgt aaaatcgggt catcattttt ctcggataaa
    56401 aacgacctca aggcaacatc aagcggaata tgagcattca gcattaaggc aatattttgg
    56461 ctgaaaaaga taatgcgaga ttgctcaata attcggctaa acagtggcat tttagcccat
    56521 agagccattt tccactttgc gactaacctg ctcttttttg caaaaaacag gtaaaaaatg
    56581 accgctagta gtaacgtgcc aagtaatact gtgccttgct caatcaagca ttcggaaagg
    56641 gtaaataaaa tatcggtaat gaggggtaaa gttttgtctt ttgagccata aagttgggca
    56701 aactgcggta caatcaaaac caatagcccg atagataaag cgagcgaaat cagcaacaca
    56761 atcaccgggt aaaacaggat tttcttcact tttttcgcca atttttccaa tttcgctcgg
    56821 ctttcagcta aattagtcag cataatgccc agttttccgc tttgttcgcc cattttgatt
    56881 agctgaattt cctgattggt cacaaattca cccaatttct ccaacgattg tgaaaaagca
    56941 tagccacttt caatatgctg aatcagctca ttaagccata gataaaggcg gatatttcgg
    57001 cagttttgca acaacataga taatgcctgt tttaacggca tggcagaatt aaccaacaat
    57061 gcaagctgtg atagcaagct attcacctct tcttttttcg ggtttgctga aagcacaaaa
    57121 tttcggctaa tccgaatatg ctgataacct tgtgccagca aaaggttttc caacatgtct
    57181 cgattcgttg ccaaccgctt gccccgctgt ttttgcccaa atcggctctg ggcttgccaa
    57241 tgaaattcat agattttcgt cattgcctaa gcaatttctc tttttgtggt tcaaaatgaa
    57301 tatctgaggc gttgtgttgc aaacagaact taaataaatt ctctaaaatt tggataatcg
    57361 gatcgtttct atccacttgt tccgaatgag ccaatgaata cgccgtattc tcctcataaa
    57421 tctcactctg ccgactactc tgctcaggcg aaagggcatt gagtaaaaac ttcaattcat
    57481 cggaggaaat caaaacaggc tcaatctgtt tgtggtagat aaacgcaaaa atctcacagg
    57541 cattgagatt ttgcatatca tcaatcccta gccaaagctg ttcttctgtt tcttgcagcg
    57601 gaatggctaa atatcgcaat aaaatctgct tttcattgca atttttctgc cactgctctg
    57661 ctgaaatctc gatgaacctt tggctgttta aatccgttac cgaatactcc attttgattt
    57721 cctcacctca aattagccgt ttggtgtaac agttgtgcta cagaaattag ctggaaatag
    57781 gctcgtatca ttgccactac aacttgccgt ccaactaatc gtattatttg agaacgacgg
    57841 tgttaaggta tagccataac cattcagaga gcctttgccg gttaccgtaa tcacgccttt
    57901 tgttaccgca attgagttta ggtatttagt ggtattacta ctggttttat tcgcctgaat
    57961 cccattcgtg ccaccggagc agttatccaa cccgccactg ttgtaaatac agacttcaac
    58021 gtctgattta tacgaagcag atgcttgtaa taactccgat aacgccgcct tttgggtgta
    58081 tgagttatag gaagggatcg caatagtggc aagaatggca ataatcgcaa tcacgatcat
    58141 caactcaatg agggtaaatg cccgatgcag ttggcgaatg ccaagcggtc taaaatgtac
    58201 aattttttgc atataaattc cttataaatt gcaccaacaa attgtggcga atcaagtgtg
    58261 caaatttttt gcctgctttg cgaccggcaa attttaattt ttcgacgcag atcgaaaaaa
    58321 taaaattttt atctgtttat ccatacagtt ttttgttaga atttgccaaa tttactcaat
    58381 taggaatcaa gaatggcaaa agcacctaaa accgcttatg tttgtaacga ttgcggggct
    58441 gaatattccc gttggatggg gcaatgtaag gaatgtaagg cttggaatac catcagtgaa
    58501 gtgcggttga tttccagcaa agaagcggcg aaatctgacc gctttagcgg ctatgccggt
    58561 gaaacgtcag gcaaagtaca aacgctgtct gacatcagct tgcaggaagt gcctcgcttt
    58621 agcagtggct ttaacgagct ggatcgtgta ctcggtggcg gcgtagtgcc ggggtcagca
    58681 attctgatcg gcggtcaccc gggggcgggg aaaagtacgt tattactgca agtaatgtgc
    58741 ggtttagccc aacatctgcc aacgctgtat gtcaccggtg aagagtcgtt acaacaagtt
    58801 gcaatgcggg caaatcactt aggcttacca acggcaaatc tgaaaatgtt gtctgaaacc
    58861 tctgtcgagc atatttgcaa tattgcagat caagaaaagc ccaaaattat ggtgattgac
    58921 tcgattcagg tgatgcactt gtcggatatt cagtcctcac ccggcagtgt ttcacaagtg
    58981 cgtgaatgtg catctttcct tacccgctac gccaaaaccc gccaagtggc gattattatg
    59041 gttgggcacg tcactaaaga tggcacgctt gccggcccga aagtgttgga acacgccatc
    59101 gatgcttcct tgctgttaga aggcgaatcc gattcccgtt tccgtacttt gcgtagccag
    59161 aaaaatcgtt ttggtgccgt caatgaattg ggcgtatttg cgatgaccga acaagggcta
    59221 aaagaggtta aaaacccatc tgcgattttt ttaagccgta gcgaagagca aacgccgggc
    59281 agttcggtga tggtgttatg ggaaggaaca cgcccattgt tggttgaaat tcaagcctta
    59341 gtcgatcact caatgctggc aaaccctcgc cgtgtggcgg ttggcttaga tcataaccgt
    59401 ttatcgctat tacttgcggt gctacaccga cacggtggct tgcagatgtc ggatcaagat
    59461 gtgtttgtaa atgtggtcgg tggggtgaaa gtcacggaaa ccagtgccga tttagcctta
    59521 attttggcgt taatttccag cttccgtaac cgtccattgc cgcaagattt ggtgattttt
    59581 ggggaagtcg gcttagcagg ggaaatccgc ccggttacca gtgggcaaga gcggatcagc
    59641 gaagccgcaa aacacggctt taaacgagcg ataattcctc acggcaatgt cccgaaaaag
    59701 gcaattaaag atatgcaggt gttcaccgtg aaaaaactca gtgatgcgtt agatattctg
    59761 tataatctct aaaatcaaga accgcttgta agtctgtctt acaagcggtc tgttttaggt
    59821 aaaaatttac gaatgtgcgg cagttggtct attgcctttg gaaatatagt ataaattaat
    59881 acacaccacc aacgcattta agccggtgac cggaatcgag ccaatcagca aaccataaac
    59941 aacgaaacag gcacaaccca gcgaattcac cacccgcagt ttaatcacat cttttaataa
    60001 aaaagaacag gcaactaaaa tcatcgccac atagccgagt atttcaacat agtccattta
    60061 gaacctcctc aaataaaata aactgccgat attttaaagg ctgttttttt atttgtatct
    60121 agctctaaaa atagcaaagg tttgcgttca catttttact tttaaccgct tagttattaa
    60181 acagattttc gttctaaaca cataaaacgg caacggaaag ggttattttc atcaatttct
    60241 gaccactttt cttctactaa cgcccaattt tgttcatcaa attcaaagaa cgtatcccct
    60301 tcaatgtctg cttgaatctc agttaaataa agtctttctg ctagtggtaa ggcttgctta
    60361 aacagttccc ccccaccaat aatcattatt tcagctgtat ttgcaaaatt tttcgctaat
    60421 tcaaccgctt gttcgagcga ttgtaccgca taagcccctt ccaccgtaaa acctgaacgg
    60481 gaaagaataa tattagggcg ttttggcaat aacctgccga tagattcata ggttttccgc
    60541 cccataatca ccggtttgcc gagcgtgttt tggcgaaacc aggctaaatc taccggcaaa
    60601 tgccacggca tttggttatc tttgccaatc accttgttga ttgttcgggc aacaataatg
    60661 ctgattttca ttttttctcc tgttatgcaa attggtttga ttttatatca aattaagcgt
    60721 gattttacac cctaaaagtg atacttttgg caacattatt tttagttaca agtgaacaga
    60781 ttatgtcaaa aactatcgtg ataaaatttg gcaccagcac tctcacacac ggcactaaaa
    60841 gtttaagccg tccttatatg ttagagctgg taaagctcaa ttacaccaac agcatcgtgt
    60901 gattgtggtg acatccggag ctgccgctgc cggtcgggac tatttaggac accctgaact
    60961 ccctaaaacc ttagcctcta agcaaatgtt agcagcggtc gggcaaagtc agctcattcg
    61021 agtgtgggaa aatttattcg atatttataa tatccatatc gggcagatgc tcttaacccg
    61081 agccgatctg gacgatcgtg aacgtttcct caatgcccgt gatacccttg atgccctgct
    61141 tgcacaaaaa atcattccgg tgattaatga aaacgatgcc gttgctaccg aagaatttaa
    61201 agtaggcgat aacgataatt tatcggcttt agttgcgatt ttggctcaag cagatcagct
    61261 ctatttatta accgaccaag aaggcttatt cagtgccgat cctcgctcaa accctgatgc
    61321 taaattgctc tcggtggtgg aaaaaatcac gcctgaaatc cgccaaattg ccggtggtag
    61381 ttcaaccggt ttaggcacgg gcggaatgag taccaaaatt actgctgctg atattgctac
    61441 ccgctccggt gtggaaacca tcatcgcctc cggttctcgc ccaaatgtgt tagttgattt
    61501 agcaaacggg caaaacatcg gcagtaaatt tttagtccaa tctgaccgct tggaaggcag
    61561 aaaacgctgg ttatttgctg ctccgcaagt gggtgaaatt gtggtagatt tcggggcgga
    61621 acaagccttg cttcaacata aatcattact gccggtggga gtttctgcca tcaaaggcga
    61681 atttactcga ggtgaagtaa tcaaaatttt cagccaagac ggcaaagcct tagcactcgg
    61741 cattgcccgt tatagcagtg aggcattgct gcgaattaaa ggtaagaaat caaaagaaat
    61801 tgaatcgctc cttggttatg aatttggttc tgttgcagtg catagtgacg aaatggtggt
    61861 gtattaatgg aattgggaat tgatgtttta gcaatcttgt ttgccgttgc gacccttgcc
    61921 ggctttatcg atgccatcgc tggcggcggt ggcttactca ctattcctgc attaatggca
    61981 gcagggcttc ctccggcaat ggcacttggc acgaataaat tacaggcgtg tggcggatca
    62041 ctctcttcct cactctattt tattcgcaaa aaagctgtta atttaaaaca aatttggttg
    62101 ctaattctat gcactttttt aggctctgcc gccggtacta tttttgtgca aatgatcaat
    62161 gtcgatttct taaaaacatt gttgcctttc ttaattctga ttatcggcat ctattttttg
    62221 gtcagcccta aaattggcga tgaagatcgt aaacaacgca ttagctttac cctatttgcc
    62281 tttaccgccg ctgtcgctct cggtttttat gatggaatgt tcggaccggc aaccggctct
    62341 tttatgactc tggcatttat tttgctgctc ggcttcaacc tctctaaagc cgtagcacac
    62401 gccaaagtga ttaattttac ctccaacttt gcctcattaa ttttctttac gcttggtggt
    62461 gcggtaatgt ggaaaatcgg cttaattatg atggtcgggc aatttattgg cggcacacta
    62521 ggtgcgaaaa tggtgatgac aaaaggcaaa aaattaatcc gtccgatgct agtgactatg
    62581 tcttttatga tggtcggcaa aatgctctac gagcaaggaa tttttaatta acaatgaata
    62641 aagcaaaacg tattgagatt ttaacccgtt tacgcaatga aaatccaaaa ccgacaactg
    62701 aactcaatta cagtaatccg tttgaattat taattgccgt gattctatcc gcccaagcga
    62761 ccgataaagg cgtaaataaa gccaccgata agctcttccc tgtcgccaac acgccacaag
    62821 cgattttaga tttaggcgta gatgggctaa aagagtacat caaaactatc ggcttattta
    62881 acagcaaggc agaaaatatt atcaagacct gccgagatct gatcgaaaaa cataacggcg
    62941 aagtgcctga agacagagat gccctcgaag cccttgccgg tgttggcaga aaaaccgcca
    63001 atgtggtgat gaataccgca ttcggacacc ctacgattgc agtcgatacc catattttca
    63061 gggtgtcgaa ccgcacgaac ttcgctcccg gcaaaaatgt agttcaggta gaagaaaaac
    63121 tgctcaaagt tgtgccggac gaatttaaag tcgatgttca ccattggttg attttacacg
    63181 gacgctacac ttgcattgcc cgtaagcctc gttgtggttc ttgtattatt gaagatttat
    63241 gtgagtttaa agagaagacg gaataacatt atctggtggt atttaatgaa taactcccct
    63301 ctttagaaaa gtaggggctg ggggagattt gatactattt caacatttcg tatgagcgta
    63361 tagaaattct gccaaatctt ccctatcccc tctttgctaa agaggggaac tagatcgagc
    63421 gtaaaatata acaagcggtc atttttttga gattttttgc aaatggatat ttatttagtc
    63481 ggtggagcag tgcgggatca acttcttggg ctgccagtga aagatagaga ttttttagtg
    63541 gttggcgcaa ctgccgaaca acttttagcc caaggatttc aacaagttgg ggcagatttt
    63601 ccggtgtttt tacaccctga aaccaaagaa gaatatgccc ttgctcgcca agaacgcaag
    63661 aacggcaatg gttacaacgg ctttatttgc gatttctccc caaacgtcac gcttgagcaa
    63721 gatttgatcc gccgagattt aaccattaac gccatcgccc aagatgaaaa cagcacactt
    63781 tttgatcctt atggcggtgt gcaagattta gaaaatcggc tactccgcca cgtttctcct
    63841 gcattcagcg aagatccgct acgggtgcta cgggttgccc gctttgccgc ccgttttcat
    63901 tcatttggtt ttaccattgc tcctgaaacc ctgaaattaa tgcgagagat ggtacaaagc
    63961 ggtgaattga aacatttaac cgctgaacgt gtgtggttgg aaacacagaa agcctttgaa
    64021 accgataatc cgcacgttta ttttgacatt ttacgcttaa ttggggcatt aaaagtgcta
    64081 ttccctgaac tggatcgtct gtttggcgta ccacaaccac ctcaacacca ccctgaaatt
    64141 gactccggca aacacactct aatggtgcta caacaggcaa aaagacttgc aaaaaaagcg
    64201 gaaaatccga ccgctttact ctttgcagcc ctttgccacg acttaggcaa aggcttaacg
    64261 cctgctgata ttttgcctca tcactacgga cacgaagtca aaggcattca accaacccga
    64321 gagttagcca atcggttaaa aatcccaact gagattaaag attttgccct tttagtgacc
    64381 gaataccaca cgcattgcca taaaatggcg gaacttcgcc ctgaaacggt aataaaactg
    64441 tttaacagcc tagatgtgtg gcgtaaacca aaccgctttt ttgatttcct gttcgcctgt
    64501 gaagcggatg ctagagggcg attaggtttt gaacagcgga attaccccca acctgaattg
    64561 gcgaaaaaat attaccaagc cgcaatcgaa attgatgtgc agcaagttat tcaagacggt
    64621 tttgaaaaac aagcaattcg ggaagagctg aataaacgca gagtgtatgc ggtaagaagc
    64681 atcaagctag atagcgacct aataaaccat taggttatcc gccactttct caaaatcaat
    64741 tcccaaagtt caagttggtt aaatgtatgg attctttaaa aggtggcgtt attttagtga
    64801 atttataatg ttcctatgct cttgattgtt gtagccacaa tttcagggta aagatcagca
    64861 ataacccaat gccgaaattg gcaatagtga agccggctaa cccaataaaa gataaaggtt
    64921 caaattgata aaattcaatc gcacctcttg ccattgcagc taaaccaaat gaaaatgccc
    64981 agaaacccat cgagaagcca ttttcagcta tccatttgag gtttcgtaaa ataaaacaga
    65041 attgtaagaa tccatatccc cataacattt ttgccaacaa gtctaattct ccacccatag
    65101 aaaaataggc agaagcgccc acaaatgccg gagcaagaac aattcctaaa gatggtctag
    65161 caatcggaaa aagcggacta agccgaattc tttgtaacat agtgggttca tatactaacc
    65221 aggaaattat gccaatgcct aaaaataaag atgcaatttc actgtagcca attaagctta
    65281 atgaacttgc catagtgaag ctccctgcaa ttggcggtag gtaatgtacc gggtgtagcg
    65341 tttccggcaa aaattgtgtg cctttccata atccaccaat aataaaaacc aagaaaatta
    65401 aatgcacaat gacgcctaaa aaaatcaata gttcgcctaa ataaaaatcc catacataga
    65461 gcacatcacc gcttatcatg gttgtcattg tcactaagga aaataaacaa cattgcactg
    65521 ggtgcataaa ttctgcttta atctgctcaa aacaaaaaaa cacacgatac acataacagc
    65581 ctaataaggc tacccaaagt atgactgacg ttccagcaat gatattacca attgttgtag
    65641 cataaggagt gataggcgtt gcatttaacc aggcaaggcc taacgccccc agccctaatg
    65701 gcattgcaaa aaagcctgta gttattggaa aaggtttaga ttcactcata aatttatcct
    65761 catattgaaa taatgcataa ctgtattcgg ctttataaca gtcatatgta aaaaatttta
    65821 tttttctaac cgcttgtaat aagaaaaacc taaagcactt gctttaggtt cctactacta
    65881 ttcatactct tctagccaga tagttaaaat cgcttcaaga atatgttcat ttgatgcttc
    65941 cggatcatca tcgaaatctt ccatttcaca aatccattta tgcatatctg taaaacgaac
    66001 cgtggtcggg tctaaatccg ggttcatatc atacagattt tcagcgatca ttcgggtatc
    66061 tgtccatttc attagtgcgc tgcctcattt gcgtgattta aattatattt tggaatttca
    66121 acaaccaaat cttcttcacc aacaatacat tggcaactta aacggctgtc tatttccaat
    66181 ccccaagctt tatccagcat atcttcttct tgatctgaag tatcatttaa cgaatcaaaa
    66241 ccctcacgaa ttaccacgtg gcaagtggta caagcacaag aacagtcgca agcgtgatga
    66301 atttcaacgc ctgcttcgtg tgctacttct aataaattat ctccggcttt agcttcaaca
    66361 accatacctt ccgggcaaaa ttcttcgtgt ggaagaaaaa caatttttgg cattttaaag
    66421 tttccttatt actaatccca ttcaatatta tccagatgtt cgccgatgaa gtttaaaatc
    66481 tcttcctcat tttcaaccag ataaacaata atcttcttta attcccttgc tttctcttta
    66541 cttttctcgg aaagcggata ggtaacataa taacatccta cgtccggatc ttcttctaat
    66601 aactctaata ggcttggacg ataaatacta agataagccc gtaaaaatgc agcccagtta
    66661 taaccgttca tataggcaac atcatattca gtattaatcc gctcgcccaa ctcaaaaatg
    66721 cggttatcct ctaaatcgaa ttcaaccgca acggttctga attgttctga aatctcggtt
    66781 tttacatagt tagacatact gcctccttat gctaaatcgt ccattttttt accggctaat
    66841 gctttttgaa ttgataaatt catacgccgt gctgcaaatt cttgcgtagc taaatccacc
    66901 tctttgatac cttgctgaat tgcaaagcga tcagtacctt cttttaattc gattaaacgg
    66961 gctaattgtg cttcaatcgc ttggaactcc tccacactca acactgcaga gccatcttct
    67021 ttcaatgccg ttaccacgct gtcaatcact cggtcggctt ctactcgctg ttcaactaac
    67081 tggcgggctt ccatatcttc tttggcattt gccattgagg atttaatcat ctgcgtaact
    67141 tcttcatcgg ttaagccata agacggtttg atttgaattg aagcctgcac tttggtcgat
    67201 ttttccattg cagtcacgtt taataaaccg tctgcatcaa cttggtaagt tacccgaacc
    67261 tgtgcaaccc ctgctgccat tgccggaatg ccacgcaaag tgattttacc gagagagcga
    67321 caatcttcga ctaattcacg ctcaccttgt aaaacgtgga ttgtcatcgc cgtttgaccg
    67381 tctttaccgg tagtaaactc ttgagctcga gctactggga tagtagtgtt gcgtggaata
    67441 attttctcca ccaaaccacc catcgtttca ataccaagcg aaagtggcac aacatcaagc
    67501 aacaacatat cggaatccgg tttgtttcca actaaaatat ccgcctgcac tgccgcacca
    67561 atggcaacaa ctttatccgg gtcgatagag gttaatggcg ttttaccgaa aaactcgccg
    67621 acttgttcac gcacaaacgg tacacgggtc gaaccgccta ccattaccac ttcacgaacc
    67681 tcttctgctt caactccggc atctttcaag gctcggcgac aagtcatcag cgagcgtttt
    67741 acaagcggtt gaattagctc attaaattgc gaacggctta ctacgcctgt ccaatttgca
    67801 aatttcactt caaattcaac cgcttgcgaa agtgcgactt tggtttgagt tgccaaagtt
    67861 aataattcac gctgctcgct tgccgtttga ggtttgtaat ttgcctgttc agcaatccat
    67921 tccgctaata ggtggtcgaa atcatcgcca ccgagtgcgg tatcacctgc ggttgctaat
    67981 acttcaaaca cacctttgcg taaacgcaaa atagataaat cgaaagtacc gccacctaaa
    68041 tcgtaaacgg caatcacacc ttcttgtccg ctttctaaac cataagcaat cgctgctgcc
    68101 gttggttcat tgagcaaacg taatacattt aaacccgcaa gacgtgcggc atctttggta
    68161 ctttggcgtt gtgcgtcatc aaaataagcc ggtacggtaa ttaccacgcc tgaaagctca
    68221 ccggctaaac gcttttcggc aaattgtgcc aagtggctta aaatatccgc cgaaacttca
    68281 atcgggcttt tattaccttg cgctgtttgg attaaaggta aaccgttttc gctcgcgaca
    68341 aattgataag gtaaattttg ataacgttgc tgaacatctg ccagagaacg cccaatgaga
    68401 cgtttagctg aaatgacggt atttttcggg tcaagtgcag ctttggcaaa ggcttcaatc
    68461 ccaactgttt tttctgtttc cgcataatgc actactgacg gcactaatgc tctttcttgt
    68521 tcatcaagca atacctgagt ctgcccgcta cgcacagttg ccactaatga attggttgta
    68581 cctagatcaa ttcctaccgc taatttatgt tgatgtggtg cagcggtttg accgggttca
    68641 gaaatttgta ataatgccat ttatttatct ctttatcttt ctaacttagt tctctattgt
    68701 attaaatgga gtgaaatata ttgtttaaga gaagctggag attcccctct ccctgatttt
    68761 tcttctgaac gaagaaaaat ctatccctct cccacaaggg gagagggtta ttctttcaaa
    68821 aattcaaaac aactaaaaaa ttagcattct ccttttgtag gagaaaatgt tgttctttca
    68881 aaattctaaa ataaccgcaa aattaactct cgccccttgt gggagagaga cagataaatc
    68941 attcgttcag aatgatttat cagagagagg gggaattacc ctctcgtaat ttcataaaaa
    69001 attgtatcta aaacagcctc tagatcgcta tgaatttgat tattccaaaa tcttaaaacc
    69061 ctgaacccct gaccgtttaa aaaatgagtt cgtagattat catagttttg ttgatctaaa
    69121 tgttgtgaac catctaattc aataactaat ttcgctgaaa agcaaacaaa atcgacaata
    69181 tagttaccta taacttgttg ccgtttaaat tttatcgcta aaaatcgttt tgctcttaat
    69241 gcttgccaaa gaaccttctc tgcttctgtc atattagtcc gaagctgttt agctc
//
LOCUS       DANMGB010000002        37626 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.002, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000002 DANMGB010000000
VERSION     DANMGB010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37626
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.002"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            265..1623
                     /locus_tag="PXG19_000071"
     CDS             265..1623
                     /locus_tag="PXG19_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL6065416.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            1626..2861
                     /locus_tag="PXG19_000072"
     CDS             1626..2861
                     /locus_tag="PXG19_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL6065417.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            2854..3627
                     /locus_tag="PXG19_000073"
     CDS             2854..3627
                     /locus_tag="PXG19_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL6065418.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            3627..4253
                     /locus_tag="PXG19_000074"
     CDS             3627..4253
                     /locus_tag="PXG19_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL6065419.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            4255..4851
                     /gene="nqrE"
                     /locus_tag="PXG19_000075"
     CDS             4255..4851
                     /gene="nqrE"
                     /locus_tag="PXG19_000075"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL6065420.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            4862..6091
                     /gene="nqrF"
                     /locus_tag="PXG19_000076"
     CDS             4862..6091
                     /gene="nqrF"
                     /locus_tag="PXG19_000076"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL6065421.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            6203..6637
                     /locus_tag="PXG19_000077"
     CDS             6203..6637
                     /locus_tag="PXG19_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6065422.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            6630..6923
                     /locus_tag="PXG19_000078"
     CDS             6630..6923
                     /locus_tag="PXG19_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6065423.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            6972..8006
                     /locus_tag="PXG19_000079"
     CDS             6972..8006
                     /locus_tag="PXG19_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL6065424.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            8019..8264
                     /gene="nqrM"
                     /locus_tag="PXG19_000080"
     CDS             8019..8264
                     /gene="nqrM"
                     /locus_tag="PXG19_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL6065425.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            8266..8682
                     /locus_tag="PXG19_000081"
     CDS             8266..8682
                     /locus_tag="PXG19_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6065426.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            8664..8975
                     /locus_tag="PXG19_000082"
     CDS             8664..8975
                     /locus_tag="PXG19_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6065427.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            9086..10249
                     /gene="mnmA"
                     /locus_tag="PXG19_000083"
     CDS             9086..10249
                     /gene="mnmA"
                     /locus_tag="PXG19_000083"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL6065428.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            10366..11745
                     /gene="argH"
                     /locus_tag="PXG19_000084"
     CDS             10366..11745
                     /gene="argH"
                     /locus_tag="PXG19_000084"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL6065429.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            11913..12911
                     /locus_tag="PXG19_000085"
     CDS             11913..12911
                     /locus_tag="PXG19_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL6065430.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            13012..14124
                     /gene="ispG"
                     /locus_tag="PXG19_000086"
                     /gene_synonym="gcpE"
     CDS             13012..14124
                     /gene="ispG"
                     /locus_tag="PXG19_000086"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL6065431.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            14130..15401
                     /gene="hisS"
                     /locus_tag="PXG19_000087"
     CDS             14130..15401
                     /gene="hisS"
                     /locus_tag="PXG19_000087"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL6065432.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            15411..16031
                     /locus_tag="PXG19_000088"
     CDS             15411..16031
                     /locus_tag="PXG19_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL6065433.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(16094..17197)
                     /gene="dnaN"
                     /locus_tag="PXG19_000089"
     CDS             complement(16094..17197)
                     /gene="dnaN"
                     /locus_tag="PXG19_000089"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL6065434.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17216..18565)
                     /gene="dnaA"
                     /locus_tag="PXG19_000090"
     CDS             complement(17216..18565)
                     /gene="dnaA"
                     /locus_tag="PXG19_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL6065435.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(18752..20599)
                     /locus_tag="PXG19_000091"
     CDS             complement(18752..20599)
                     /locus_tag="PXG19_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6065436.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(20668..21177)
                     /gene="luxS"
                     /locus_tag="PXG19_000092"
     CDS             complement(20668..21177)
                     /gene="luxS"
                     /locus_tag="PXG19_000092"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL6065437.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            complement(21195..23861)
                     /locus_tag="PXG19_000093"
     CDS             complement(21195..23861)
                     /locus_tag="PXG19_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL6065438.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(23944..24384)
                     /gene="fur"
                     /locus_tag="PXG19_000094"
     CDS             complement(23944..24384)
                     /gene="fur"
                     /locus_tag="PXG19_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL6065439.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(24420..24944)
                     /gene="fldA"
                     /locus_tag="PXG19_000095"
     CDS             complement(24420..24944)
                     /gene="fldA"
                     /locus_tag="PXG19_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL6065440.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(24950..25225)
                     /gene="ybfE"
                     /locus_tag="PXG19_000096"
     CDS             complement(24950..25225)
                     /gene="ybfE"
                     /locus_tag="PXG19_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL6065441.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            25466..26452
                     /locus_tag="PXG19_000097"
     CDS             25466..26452
                     /locus_tag="PXG19_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6065442.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            26549..27844
                     /locus_tag="PXG19_000098"
     CDS             26549..27844
                     /locus_tag="PXG19_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6065443.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            27964..28332
                     /locus_tag="PXG19_000099"
     CDS             27964..28332
                     /locus_tag="PXG19_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL6065444.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            28332..29525
                     /locus_tag="PXG19_000100"
     CDS             28332..29525
                     /locus_tag="PXG19_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6065445.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(29596..29814)
                     /gene="infA"
                     /locus_tag="PXG19_000101"
     CDS             complement(29596..29814)
                     /gene="infA"
                     /locus_tag="PXG19_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL6065446.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(29924..30583)
                     /locus_tag="PXG19_000102"
     CDS             complement(29924..30583)
                     /locus_tag="PXG19_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL6065447.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            30669..31532
                     /gene="serB"
                     /locus_tag="PXG19_000103"
     CDS             30669..31532
                     /gene="serB"
                     /locus_tag="PXG19_000103"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL6065448.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            31548..32039
                     /locus_tag="PXG19_000104"
     CDS             31548..32039
                     /locus_tag="PXG19_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL6065449.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            32124..32300
                     /locus_tag="PXG19_000105"
     CDS             32124..32300
                     /locus_tag="PXG19_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL6065450.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(32348..32644)
                     /locus_tag="PXG19_000106"
     CDS             complement(32348..32644)
                     /locus_tag="PXG19_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065451.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(32721..33689)
                     /gene="mdh"
                     /locus_tag="PXG19_000107"
     CDS             complement(32721..33689)
                     /gene="mdh"
                     /locus_tag="PXG19_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL6065452.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            33885..34346
                     /gene="argR"
                     /locus_tag="PXG19_000108"
     CDS             33885..34346
                     /gene="argR"
                     /locus_tag="PXG19_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL6065453.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            34396..35292
                     /locus_tag="PXG19_000109"
     CDS             34396..35292
                     /locus_tag="PXG19_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL6065454.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            35337..37535
                     /gene="uvrD"
                     /locus_tag="PXG19_000110"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             35337..37535
                     /gene="uvrD"
                     /locus_tag="PXG19_000110"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL6065455.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
BASE COUNT        11083 a         7236 c         8216 g        11091 t
ORIGIN      
        1 tcaaatttta ccgcgggaat atgcaaaaaa tagggggttt tcctagccag aaggggagct
       61 ttttaggtaa aataagaaga ttatttttag ttaacctttt gttaagaaaa gataaaggtt
      121 gatcacagat ttgagaactt aatgtggctt ttaaaaatag gtgggggacc attgtttatt
      181 tttaagtaaa gctgcggctc aatagaagcg attgcgttag cgcaatcata ttttttaacc
      241 caaaagaaaa gtagtgcaaa caatatgatt acaatcaaaa aaggcttaga tcttccgatt
      301 gcgggaaaac ctgagcaagt aatccataac ggtaataccg ttactgaagt tgctatgctt
      361 ggtgaagaat atgtgggtat gcgtccttca atgaaagtgc gtgaaggcga tgtagtaaag
      421 aaaggtcagg ttctttttga agataaaaag aatccgggcg tggtatttac tgcccctgca
      481 agtggtaccg taacggcaat taaccgtggc gagaagcgtg ttcttcaatc ggtagtaatt
      541 aaagttgagg gtgatgagca aattaccttt gctcgttatg aagccagcca attagcttca
      601 ttaacttcag agcaagtaaa acaaaacctt gtagagtcag gcttatggac ggctttccgt
      661 acacgtccgt ttagcaaagt gcctgcatta gatgcagaac cttcctctat ttttgtcaat
      721 gcgatggata ccaatccact tgcagcaaat ccggaagtga ttattgcaga acaccaacaa
      781 gctttctttg atggcttaac tgtattaagt cgtttatttg aaagtaaaaa agtgattcat
      841 ctctgtggca gtgcagactc aaatatttta aatgcggcac aaagccgtca gatcaataat
      901 gtggaaacta accgctttaa aggtccgcac cctgcaggtc tttctggtac gcatattcac
      961 tttattgacc cggtaggtgc aactaaacaa gtttggtatt taaattacca agatgtaatt
     1021 gctatcggta aattatttac gaccggtgag ctatttactg accgtgtagt cgcattagcc
     1081 gggccacaag tgaaaaatcc acgtttggtg cgtactcgtt taggggcgaa tctttcacaa
     1141 ttaacagcca acgaattaaa tgcgggtgaa aaccgtgtca tttcaggttc tgtgttaagt
     1201 ggtgctatcg caacgggagt acacgactat ttaggtcgtt acgcattaca agtgtctgct
     1261 ttattagaag ggcgtgagaa agcgttcttc ggtatgattg ctccttactc tgataagtat
     1321 tcaattacgc gtactacttt agggcatttt gcgaagaaat tatttaactt cacaacagca
     1381 gttcacggta gtgagcgtgc aatggtacca acaggggctt atgagcgtgt aatgccgttg
     1441 gatatcattc caacactctt attgcgtgat ttagcagctg gagatacaga ctccgctcaa
     1501 gctttaggct gcttagagtt agacgaagaa gatttagcgt tatgtacttt tgtgtgttcc
     1561 ggtaaaaaca actggggacc attattacgt caagcgttag ataagatcga gaaggacggt
     1621 taaaaatggg tttgaaaaat ctttttgaaa aaatggaacc cgctttccat aaaggtggaa
     1681 agtatgagaa atggtacacg ctatttgaag ctgcctatac gattttctat acaccgggta
     1741 cggtcactcg taaagatgct cacgtgcgtg atgcgattga ctctaagcgt atgatgttaa
     1801 ttgtatggtt agcgttattc cctgcgatgt tctacggaat gtacaatgtt ggtgcacagg
     1861 gtattctagc ggcactcaaa atgggaacat taacggattt agttgctaac aactggcact
     1921 acagcttagc cgatagttta ggctctgtag ctgatgcagg ctggggaact aaaatgttgc
     1981 tgggggcaac ctatttccta ccaatctact taacagtatt tgcagtgggc ggtttctggg
     2041 aagtggtgtt tgcaatggtg cgtaagcacg agatcaacga aggtttcttt gtaacctcta
     2101 tcttactagc attaattgtt cctccaacat taccgttatg gcaagcagcc cttgcaacta
     2161 cctttggtgt tgtggtcgca aaagaagtgt tcggtggcgt gggtaaaaac tttatgaacc
     2221 ctgcgttagc cggtcgtgct ttcttgttct ttgcttaccc gggtcaaatt tcaggtgatg
     2281 cagtatgggt tgccgcagac ggcttctcag gtgcaactgc actttctcaa tgggcagttg
     2341 gtggtcaagg tgcattacag cacgttgcaa ccggtgaaac cattacttgg atggatgcgt
     2401 tcttaggtaa tattccgggt tctatcggcg agacctctac cttaatgttg attattggtg
     2461 ctgcaatcat tgtatttgcc cgaattgctt cttggcgaat tattgccggt gtaatgattg
     2521 gtatggcggc aactgcgaca ttatttaatg taatcggttc tgataccaac ccattattct
     2581 ctatgccttg gcattggcat ttagtattag gcggttttgc gatcggtatg ttctttatgg
     2641 caaccgaccc ggtatcagct gcatttacca acaaaggtaa atgggcatac ggtatcttaa
     2701 tcggctttat gtgtgtatta atccgtgtgg taaacccagc ataccctgaa ggtatgatgt
     2761 tagcgatctt atttgctaac ttatttgctc caatctttga ctatttagta gttcaaggga
     2821 atatcaaacg cagattagcg agggtagcaa acaatggcta aatttaataa agatagcgtt
     2881 ggcggaacgc taaccgttgt agttttatta agtttaattt gttctttgat tgtggcaggt
     2941 gcggcagtaa tgcttaaacc aacacaagat attcagaaac aacttgataa acagaaaaac
     3001 atcttacaag cggccggttt attgcaaaaa gataccaatg tgcaagaaac ctataccaaa
     3061 tttattgagc cgaaaattgt cgatttagca acaggtgatt acgttgaggg tgtaaccggt
     3121 tttgatgctc gtgcagcagc taaagatcct gctcaaaatg tagttatcgc acctgaagat
     3181 gataaggcga atatcaaaac gcgtgctaaa tatgctgaag tttatttagt aaaagatgaa
     3241 tctggcaaaa cgactcaagt agtattacca atgcacggta acggcttatg gtcaattatg
     3301 tacggtttcg ttgcggtaca acctgatgca aataccgtta acggtattac ttactatgaa
     3361 caaggtgaaa cggcaggctt aggtggcgaa attgcaaacc cgaactggca gaaaaacttt
     3421 gtaggtaaaa aactgtataa cgagcaaaac caagttgcgt taagagtggg taaaggggca
     3481 tctgcagata aagatcacgg tgttgatggt ttatctggtg caacattaac ctcgaacggt
     3541 gttgatggtt cattcaaata ctggtttggt caaaatggtt ttggtccata tttagcaaaa
     3601 tttaaagcag cggcaggagc taactaatgg cagacaataa caatcttaaa aaattattgt
     3661 tatcgccaat tgtcgataac aacccgatcg cattacagat cttaggtatt tgttctgcgt
     3721 tagcggtaac gactcaatta caaacagcag tagtaatggc gattgcggta agtttagtta
     3781 ctgcattctc aagtatgttc atttcaatga ttcgtaacta tattccaaat agtatccgta
     3841 tcattgtgca aatggcgatt attgcatcat tagtaatttt ggttgaccaa atcttacgcg
     3901 cttatgctta cgatctgtca aaacaattat cggtattcgt aggccttatt attaccaact
     3961 gtatcgtaat ggggcgtgca gaagcattcg cgatgaaatc aggcccggtt gaaagttttg
     4021 ttgatggtat cggtaacggt ttaggctacg gtgcaatgtt aattatcgtt gcctttttac
     4081 gtgaacttat cggttcaggt aaaattttcg gtatcaccat tcttgaaact gttcaaaatg
     4141 gcggttggta tcaagcaaac ggtttattct tattagcacc aagtgcgttc tttattatcg
     4201 gatttgtgat ctgggcgatt agaacgtgga aaccggaaca agtggagaaa taagatggaa
     4261 catcttctga gtatctttgt taagtccata tttattgaaa atatggcact ttctttcttc
     4321 cttggtatgt gtacattcct tgcggtgtct aagaaagttt caactgcttt tggtttaggt
     4381 attgcggtaa ttgtagtact tggcattgca gttccagcta accaattagt ttatacccac
     4441 gtattaaaag agggtgcatt agtagaaggt gtggatttaa gcttcttaaa ctttatcact
     4501 ttcatcgggg ttattgcggc acttgttcaa attctggaaa tgattttaga caagtttttc
     4561 ccggcacttt atagtgcatt aggtatcttc ttaccactta tcaccgtaaa ctgtgcgatt
     4621 tttggtggtg tatcgtttat ggtacaacgt gagtataact ttgtagaatc tgtggtttat
     4681 ggcgtaggtg caggtacagg ctggatgtta gccatcgttg cccttgcagg tttaaccgag
     4741 aaaatgaaat attccgacgt gccggcaggc ttacgtggtt taggtattac ctttattacg
     4801 gtaggcttaa tggcgttagg ctttatgtca ttctcaggca ttcaattata aggagcatat
     4861 cgtggatagt aattttattt tcggtattat cgcatttacg gctctggtat tagtgcttgc
     4921 ggtgatcatt cttttcgcta aatcaaaatt agttgattca ggtgatatta ccatctcaat
     4981 caacaacgat ccggaaaaag gcattacgct accggctggt ggaaaattac tcggtgcttt
     5041 agcaagtaaa gggattttcg tttcgtcagc ttgtgggggc ggtggctctt gcggtcaatg
     5101 taaagtacaa gtgaaatcag gcggtggtga aattcttcca actgagttat cgcacatttc
     5161 taagaaagaa gcgaaagaag gctggcgttt agcttgtcag gtaaacgtga aatcttcaat
     5221 ggacgttgaa cttccggaag agatctttgg tgtgaaaaaa tgggaatgta ccgttatctc
     5281 aaacgataac aaagcaacct tcatcaaaga gcttaaactt caaattcctg aaggcgaaga
     5341 agtaccgttc cgtgcgggtg gttatatcca aattgaagct gaacctcata ccgttcatta
     5401 taaagacttc gatattccaa aagagtacca cgaagactgg gataaatttg acttatggcg
     5461 ttatacttca aaagtggacg agcatattat tcgtgcatac tcaatggctt catatccgga
     5521 agagaaaggc attattatgc ttaacgtgcg tattgctaca cctccaccac gcaatccgga
     5581 cgtaccgccg ggtcaaatgt cttcctacat ttggtcatta aaaccgggtg ataaagtaac
     5641 aatttcaggt ccattcggtg agttcttcgc taaagatacc gatgcggaaa tggtctttat
     5701 cggtggtggt gcaggtatgg caccaatgcg ttcacatatc ttcgaccaat taaaacgttt
     5761 aaaatctaaa cgtaaaatgt cattctggta tggtgctcgt tctgagcgtg aaatgttcta
     5821 tgtggaagat tttgatggtc ttcaagcaga aaacgataac ttcaaatggt atgtggcact
     5881 ttctgatcca ttaccgggcg acagagaaga ttacttccgt ggctttattc ataacgtgct
     5941 ttatgagaac tacctcaaaa accacgaagc acctgaagac tgcgaatact atatgtgtgg
     6001 tccaccggtg atgaatgctg cggtaatcgg tatgctgaag agtttaggtg tagaagacga
     6061 aaacatctta ttagatgact ttggtggttg ataaacctta acttctgact acaagcggtc
     6121 aaatttgcaa aattgaccgc ttgatttaat ttatattatt aagttttggt aatttaataa
     6181 tgtgaatttt aaggggaagc aaatggaaca actggatatt acggtacttg aaaatgcctt
     6241 caattccctt gagaaaacga ttgtcagcct tgagaatcaa gcgtggttta accggcaaga
     6301 agcaattatt caagacactt tgattgcagg agcaatccaa aaatttgaat ttgtttacga
     6361 attgtcgata aaaatgctca agcgtcagct caaaaacatt gagtcaaatg acactgatat
     6421 tgatagcacc gagttccgtg atattttgcg aatggctgct caatatgggc tgattgaatc
     6481 accggaagtt tggctggatt atcgcaaaat gcgaaatatt acttcgcata cttatgatca
     6541 aaataaagca cagcaggttt ataacggaat ttcaaacttt ctggaaagta cgtatttttt
     6601 agttaaacag ctccaaaaac gcaatagcta tgattgattt aactgagtca caacgccaac
     6661 aggtgttgga tattttcaaa aaatacttgc ctgatacacc cgtttgggtt tttggctctc
     6721 gcattaaagg cacagccaaa gcctattcgg atcttgattt agcattaatc accaaacaac
     6781 cgctcacaat tcggcaacaa acagagttag agcttgcgtt tacggattct gacctacctt
     6841 tcacagtaga tctgattgac tgggcaagtt gcaacgaatc gtttaaacaa attattttac
     6901 agcgatatga agtgcttatt taatcgctaa atatgctata atttccccaa tttttaactt
     6961 ttgtgacacc aatgaaaaaa ttttttcttc ttttaattgc tttttttact ttaagtgctt
     7021 gtgaaaaagc ccctgagcaa attacgctgt caggcaaaac catgggaacg acttacaccg
     7081 taaaatatat tgataatggt gaagtggaga atttgatttc gcctgaaaaa atgaaaaatg
     7141 agctggatgg cttattgatt gaggtgaata atcagatgtc cacctaccaa caagattcgg
     7201 aaattagccg ttttaatcaa gcaaagcagg caaatcaagc ggtcgaaatt tcgcaggatt
     7261 ttgcaaaagt ggtacaagag gcaatccgtt taaataaagt aaccgaaggg gctttagatg
     7321 taaccgttgg tccattggtg aacttgtggg gcttcgggcc ggataaacgc ttaaataaag
     7381 tgccgtctga tgaacaaatt gcagagcgtt ctgcttatgt cggcattgat aaaattttgc
     7441 ttgaaatgag tagtaaaccc aagctcacca agtcagcagc taatctttat ctagatttat
     7501 cgtctattgc aaagggtttc ggtgtagata aattagccga gcatcttgaa actataggtg
     7561 tgagcaacta tttagttgaa attggtggcg aattacgagg caaaggaaaa aatttacaag
     7621 gcttagattg gcggattgca atcgagaagc cggtaatgac acaaggtcaa gccgcacaaa
     7681 ttaccgtgcc gttgcacaat ttggcgatgg caacttcggg caattatcgt aattattttg
     7741 aagatgaaaa aggcaaccgt ctttcacata ttatcgaccc aaaacagtta cgtccggtaa
     7801 accataattt agcctctatc accgtatttg ccccaactac aatgacggca gacggcttat
     7861 caaccggttt atttgtttta ggagcggaaa aagcattagc agtggcagag cgtgaaaaat
     7921 tagctatttt tttaattgtt aaaaacggcg ataaatttga gacacaaatg tcgagcgaat
     7981 ttagcaaact tattcaatca caatagttgg agtgaaaaat ggaaactgta ttattaacct
     8041 ttggcttttt tgtagccgta atttttgcga tgtcgattgg ttttatcgtg aaaggcaaaa
     8101 ccatcaaagg cagctgtggc ggtatcaccg ctttaggtat gaaaaaaatg tgcgactgcg
     8161 aagaaccttg cgataaccta aaatctaaaa tcgcagacgg cacagccgac cctgaagaag
     8221 tggcacgttt taataaagag ccacaatttt atgaagtgaa ataatatgaa tagagatatt
     8281 cgctggaaac agcggtttga taactataaa aaatcagtaa gttaccttca agcagaagca
     8341 gaaaaatacg ctgataccga cattgatgta attaaaaaag gaattatcca gagttttgag
     8401 attacacacg agttagcgtg gaagttaatg caagatattt taaaatggga aggtgaagtt
     8461 gatatttatg gttcaaaaac ggcttctcgt ttggctttta atcgtgggct aatcactcag
     8521 ggcgaagttt ggctagaaat gataaaaagc cgcaatataa cagttcatac tgacgatgaa
     8581 actattttaa ctgaagaatt taataaaatt atcaaggcgt atctgccttt atttattgaa
     8641 tttgaacagc gagtagaaac actatgccaa actttggact aagcgaacga gcgacgaaaa
     8701 ctattaccga tattcttgcg aaataccctg aagtggagca agccattatt tacggctcgc
     8761 gtgctaaagg taattatcgt gaaggctcag atgtagatct tacttttaaa ggaaaagatc
     8821 ttacttacga tattgtcaaa cgcatttggg gtgatttaga cgattccgac tcgccctatt
     8881 tatttgactt gtcgatttat catcaattaa ccaatgccaa ctttattgaa catattgata
     8941 gagtaggaaa agtcttttac caaagagaac tctaatttct taataggcaa gcggttcatt
     9001 ttgcaaaatt ttttgcaaat ttcaccgctt gttgttttta ttattaacca atgtgcttcg
     9061 ccttaaccga agttacggga gatttatgac aactcaatta acctcaaaaa cctacgacac
     9121 tcatttccct aaattaaccc cagaacaact tgctgaaaac agcaagaaaa aagtcattat
     9181 cggtatgtcc ggtggggtgg attcctcggt ttccgctttt attcttcaac agcagggcta
     9241 ccaagtggaa ggcttgttta tgaaaaactg ggaagaagat gatgatacgg attattgtac
     9301 cgccgccgcc gagcttgccg atgctcaagc ggttgccgat aaactgggta tgaaactgca
     9361 taaaattaat tttgcagcgg aatattggga taatgtattt gaatatttct tggcagaata
     9421 caaggcagga agaacgccaa atccggatat tttgtgtaat aaagagatca aatttaaagc
     9481 ctttttggaa tatgcggcag aagatcttgg tgcggattat attgcgaccg ggcattacgt
     9541 ccgccgtacg agcgatgatc aagatgcgaa acttttgcgt ggcttagatg aaaacaaaga
     9601 tcagagttac tttttatatg cgttaaataa aaagcagatc gggcagagtt tattcccagt
     9661 gggtgaaatt gagaagccga ttgtgcgagc cattgccgaa gacctaggat tagcaaccgc
     9721 aaagaaaaaa gattctaccg gcatttgttt tatcggtgag cgtaaattta aagatttctt
     9781 agctcgtttt ctaccggctc aaccggggga aatccgcacc gttgagggca aattagtcgg
     9841 tcgccatgat gggctgatgt atcacacgct tgggcaacgc aaaggcttgg gtatcggtgg
     9901 ggtgaaaggg ctaagtgaag atccgtttta tgtggtggag aaagacttaa ttaacaatgt
     9961 attgattgtg gcacaaggac acgataattc agccctgctt tcaagtggct taattgcgaa
    10021 acagctcact tgggtggata tgcagccgtt gcgtgaaaat ttacgctgca cggtaaaaac
    10081 ccgttatcgt caagcagata ttgcgtgtga aatccaagtg attgatgatg aaaccattcg
    10141 agtgatgttt gatgaaccgc aaattgccgt gacgccgggg cagtctgccg tgttttactt
    10201 aggtgaagtt tgcttaggcg gtggcattat tgagtcacaa ttaaaatagt tataaataaa
    10261 tattgaaata ttttgcatat ttatgcaaaa taagcgaaaa gttaaggcgg taaaacgcct
    10321 ttttcatttt gatcgataca aagaataata tacaaggaac agactgtggc actttggggt
    10381 ggacgcttta cacaacaagc agacgcaaaa tttaaatatt ttaacgattc attacgtttt
    10441 gattaccgct tggcgattca agatattgaa ggctcaatcg gctgggcaaa agccattact
    10501 tcggtaggta ttttaacggt agcagaatta gaacaactaa tcgcagcatt aaaagaggtg
    10561 agagcagagg tagaatctaa ccttaccatc atcttaaaag atgatgcgga agacattcac
    10621 agctgggttg aatctaagct gattgaaaaa gtgggcgatt taggtaaaaa attgcacacc
    10681 gggcgtagcc gtaatgacca agtagcggtg gatattaaaa tgtggtgcaa ggtgcaagcg
    10741 gtggcattgc aagaaagaat ccgagctttg caagagcgtt tggtttccgt tgccgaagaa
    10801 aatcaagagt cggtgatgcc gggctatacc catttacaac gagctcagcc tgtgaccttc
    10861 gctcattggt gtatggcgta ttatgaaatg ctagaacggg atttcagccg tttgagtgat
    10921 gctaataaac gtatgagcac ttgcccgctt ggttcagggg cattggctgg tacggcttac
    10981 ggcattgatc gtgacttatt agcccgtgat ttaggctttg aagaagccac acgcaacagt
    11041 ttagacagcg tgtcagatcg tgaccatatt ttagagctgc tctctactgc ctcgatcagt
    11101 atgatgcacc tctctcgctt tgctgaagat ttaatcattt ttaatagtgg cgaatcaggc
    11161 ttccttgaaa tgtcggatcg tgtgacctca ggctcatcac ttatgccaca gaagaaaaac
    11221 cctgatgctt gtgagctgat tcgtgggaaa tccggtcggg tatttggggc attaaacggt
    11281 ttattaacta cactcaaagg gttaccactt gcttataata aagatatgca agaggacaaa
    11341 gagggtattt ttgatgcgtt ggaaacttgg caggcttgtt tagaaattgc agaacttgta
    11401 ctggttgata ttcaagtgaa taccgaacgc acccgagaag ccgctcagca aggttatgcg
    11461 aatgcgaccg agttggcaga ttatttagtg gcgaaaggcg tgccattccg tgaagctcat
    11521 catattgttg gcgaagcggt ggtttacgca atcagcaaaa aagagccact tgaagcatta
    11581 agcattaacg aattccagca attccatcat tcgattggcg atgatgttta cccaattctc
    11641 tcgttagaat cttgcttaga aaaacgttgt gccaaaggtg gagtgaaccc acaacgtgtg
    11701 gcagaggcga ttgcggtagc caaagccaat ttagcttcaa agtaaaaccg gatacaagcg
    11761 gtcatatttt gcaaaaaaat tgaaaaatat gaccgcttgc cgattaaatt ttcaattttt
    11821 tacgcattaa gattgcaaaa taggcattac ctctttaaac ttccgaataa tttttgaatt
    11881 ttatttctac tactttcttt aaagagtttt atatgacgga atcagttaat tctactcaag
    11941 ctggtacagc actttcttta gggcaacaat taaaagcggc tcgtgaagcg ttaaatctct
    12001 ctattacaga tgttgctcaa aaaaccaact taaaaaaatc acatattgaa tcacttgaaa
    12061 atgatatctt tattctacaa aatgttgccc caacttttgt gcgtggctat gtgcgtaatt
    12121 atgtgaaatt tttgcgttta cctgaatccc ttatttcgag cgttaattat ggtgaagtca
    12181 ctattccaaa agaagtcact aaagtttctt cagtaaaacc ttcatcaaat tcacaaggta
    12241 aaaccttaaa gtatttaacg gtattagtat tgcttgcggc attaggaatg acattacttt
    12301 ggtggtggca agggtatcaa aaagaacagg aaaatcgcga gcaatttgtt agctctgcac
    12361 cagttgctga agtggcgaat accgctacaa ataatgatgc ttcagcacaa acttccgtgc
    12421 ctgttcagca acctattcag gtttcagagc agcctgctca agtagcagaa acggtagttg
    12481 cagcagaacc ggcattaact gaaaaagtag agcctacaca agcagcatca tcacctgtaa
    12541 cacaagaaga tgttaaagtg gtagaagaag ttaaacaagc tgatgccacc actgcacagg
    12601 ttgaggcagt taatgtttta cagcaatctc aatcggaaca agcccctaca gaacagcctg
    12661 ttgcggtaac gaatgatgag cttcgtatcg aaattaccgg ttcacaaagc tggattacag
    12721 tgcggggtgc taaaaataaa cgtttagcag aaaaattata taacaatggt gagactttaa
    12781 gtttcaatga gaatgagcaa tatcgtttaa ccattggtgc gcctgccaat gtaaaagtgt
    12841 actataaagg tcaagaagta ccattgaaaa ttgatgggcg tgtagctcgt attcatttac
    12901 cgttacagta agcttgattt aacgatgaaa cgcacgtaaa gctagcattt aacgatagct
    12961 gtctttacga gcgttttctg tttttataaa ttttcacaat tagctaaaaa tatgatacat
    13021 caatcaccta ttaaacgtcg ggtatcgaag aaaatctatg tgggtaatgt gcctgtaggc
    13081 ggcgatgcac cgattacggt tcagtcaatg accaacaccc gcacaaccga tgtggaagcc
    13141 accgttgctc aaattaaatc gctggaacgg gtcggggctg atattgtgcg tgtgtctgtg
    13201 ccgacaatgg acgctgctga ggcatttaaa gcgattaaac aacaagtgag tgtgccattg
    13261 gtggcggata tccacttcga ttaccgcatt gcgttgaaag ttgccgaata tggggtggat
    13321 tgcttgcgga ttaacccggg taatatcggg aatgaagagc ggatccgcac ggtggtagat
    13381 tgtgccagag ataaaaacat tccgatccga atcggggtaa atgccggatc attagagcgt
    13441 gatttgcagg aaaaatatgg cgagccgaca ccacaggcat tattagaatc ggcattacgc
    13501 cacgttgatc acttagatcg ccttaacttt gatcaattca aagtcagcgt gaaagcctca
    13561 gatgtatttc tagcggttga atcttaccga cttcttgcaa aacagattga tcagcccctg
    13621 catttaggta ttactgaagc aggcggagcg agagccggtt cggtgaaatc ggcggtaggc
    13681 ttaggtctgt tgctagcgga agggattggt gataccttgc gtgtgtcatt agcggctgat
    13741 cctgttgaag aggtgaaagt cggttttgat attttgaaat cgctgcgtat tcgctctcgt
    13801 gggatcaact ttattgcttg cccaacctgc tcccgccaag aaattgatgt gattgcgacg
    13861 gtaaacgagc tagaacaacg tttagaagac attatcacgc cgatggacgt ttcgattatc
    13921 ggctgtgtgg taaacggtcc aggagaggcg ttggtgtctg atttaggggt aaccggcagc
    13981 aataaaatga gcggctttta tttagatggc gttcgtcaaa aagagcgttt tgacaacgca
    14041 aaattaatcg accaattaga agctaaaatt cgtgccagag ttgcacaaca acataatcgt
    14101 atagatattg aacaaatagg ataaatatag tggcaaaaac aattcaagca attcgaggaa
    14161 tgaacgactg ctcaccaagt gagtctccat tatggcaatg ggttgaacag aaagtgcgta
    14221 atgtgctggc aagttacggc tattcggaag tacgtatgcc gattgtagaa agcactccgt
    14281 tatttgcccg tgccattggc gaagtaaccg atgtggtgtc gaaagagatg tacacgttct
    14341 gggataacga tgagcaatta acgctccgcc cggaaggtac agccggttgt gtgcgtgcag
    14401 cgattgagcg tggttggatc tacaataatg agcaacgctt atggtatatg gggccgatgt
    14461 tccgccacga acgtccacag aaagggcgtt accgccaatt ccaccaagcc ggtgttgaag
    14521 tgtttggcat tgcaaatccg gaaattgatg cggagttgat tattctcacc gcacgcctat
    14581 ggaaagagtt aggcatcgat caacatgttt ctttgcaact taactctatc ggctcgttag
    14641 aagctcgtgc aaattatcgc tcagcattag taaaattttt agaaaatcac accgctttaa
    14701 tgaacgaaga agagaaagag cgtttggtga aaaacccgct acggatttta gataccaaaa
    14761 acgaagcact acaaaatgta ttaaacgatg ccccaaaact gctcgattat ttagatgatg
    14821 acagccgtga acattttacc caactttgtg ccttacttga tgcaatggga atccgttacg
    14881 aagtcaatcc aaaattggtg cgtggtttag actattacaa taaaaccgtg tttgaatggg
    14941 tcacttcagc cttaggctca caaggcaccg tatgtggcgg tgggcgttat gacggcttag
    15001 tcgaacaact cggtggacac gcaacccaag gcgttggctt tgcaatgggc ttagagcgtt
    15061 tagtgctgtt ggtacaagag gtgaataaag agattgattt accaaaaacg gtggatgtgt
    15121 atatcgtatt ctccggtgaa ggggcaacac taaatgcctt ccaacttgca gagcagattc
    15181 gtagcgaatt gccacacgtt ggcgtaatga cacactgttc cggcggtaaa ttccaaaaac
    15241 aatttaagcg tgcagataaa gtagaagcgc aaattgcgtt agtgattggc gaaagcgaag
    15301 tggctgaaaa gcaagttgtt atcaaagatt tacgttcagg agcagaacaa atcacgattg
    15361 ctcaatcaga gctgattgct gagctatcta aacgatttta ggagaaaaag atgagtaacg
    15421 aatatttaaa taaaaccgaa gagcagcaat ttgaagatgc caaaaattgg tttaaagaga
    15481 acgggacacc gattttggtg gcgattattt tagcttgtgc ggcaactgcc ggctggaatt
    15541 tttggaaaaa tcaccagctt gaaacggcac aaaaaacatc cgcttcatac caaagcgtga
    15601 tggagagtta tttgcaaaat ccaagcaaaa atcaaccgct tgttgagaaa tttattgccg
    15661 ataataaaga ttcaagctat gccgcttttg cccaatttga agtagctaaa caagcggtcg
    15721 aaaaagggaa tttttctgcg gcaaaaacag cgttacagtc agttttgact tattcggatt
    15781 caaccttaca atctatcgct cgttttcgtt tggctcaaat tgacttccaa ctaaaatctt
    15841 acgatgaagc actggcaagt ctggctcaaa ttcaagataa agcgtgggaa ttgcgtaagc
    15901 aaattctaac aggcgatatt cttgcagcaa aaggcgatat tcctgcggcg aaaagtgctt
    15961 atgagcaagc taaaacgacc gcaaatcctc aggaacaaac cttaattgat gtacgtttga
    16021 ataacttata aaaacaaagc ctgattgaaa taaaatcaat caggcttttt tgttggttta
    16081 gtgttgctgt gaattataaa cgcattggca taatcacata ttcggcagag ctgttgtcgc
    16141 aatcttcaat taagcaacta gaacttgaat caactaagct aaaacgcaca cgttggcatt
    16201 ttaaggtgtt taacacatct aatacatagc taacgttaaa gccgacttcc atttccgggc
    16261 tgtcgtaggc aacatcaatg atctcttccg cctcttcttg ctccggattg tttgcggtaa
    16321 ttttgagtaa attattgctt aaggttaaac gcacccctct aaatttctca ttagaaagaa
    16381 tcgctgcacg cattaatgcc cgtttaaggg tttcggtttc cgcttctaga atgcgatctg
    16441 cattgcgagg cagaactcgg cggtaatccg ggaatctgcc atcaatcagt ttagaggtaa
    16501 atacaatgcc gttcattgta atacggatat tgcttgaacc gatttccaaa cgcacggttt
    16561 catcgttgct ggcaaccaag cgggaaagct caagtacggc tttgcgtggc acgataaccg
    16621 aatgagtcaa aagctcttga tttagcacca ttgtgcaaac cgctaaacgg tgcccatctg
    16681 tggcaacggt gcgtaataaa ttgccttcgg tttcaaattt cattccgttt aagaaataac
    16741 gggcgtcttg gtttgccatt gagaattggg tggcatcaat cagacgggca agggtagatt
    16801 gatcaatcga gaaatccact tccggtttcc aatccatcaa attcgggtaa tcacttgccg
    16861 gtaatgtagc taaactaaat ttactacgtc ctgctttgat aatggcttta tcttcttcaa
    16921 attgtaccga aatcacgctg tcatcaggta ggcttttact gatatctagg aattttttag
    16981 ctggaatggt aaattttccg gcaaaatcga ccgcttgtag cagttgtgct tgggtggtta
    17041 attccacttc taaatcggta ccggttaaag atagacgatt accttcaatt tctaataaaa
    17101 gattgttaat aacaggcaaa gtcggacggc tacttaatac gccacacacc tgttgtaaag
    17161 gcttaagtaa ttgttctctg gtaatggtaa tttgcataat cattccttca tcgggctaag
    17221 atgataattt gcgtgttaaa tggatataat cttcttggat accgctttcg gtatcgcgta
    17281 attcattaat ggttttgcag gcgtgcatca cggtagtatg atcccgaccg ccaaattccc
    17341 gaccaatttc cggcaagctg tggttggtta gctcttttgc cagtgccatt gccatttggc
    17401 gaggacgggc aatgcttctt gcccgacttt tcgatttaat atcggcaact tttatgccgt
    17461 aatattcggc cacaatgcgt tgaatatttt caatcgtaat caagtaatca aaagaggcaa
    17521 acagatcttg caaggtttca cgcaccgcat caaccgtaat cgggcgaagg gtcaattttt
    17581 gccacgcaat cacacggttt aatgctccct ccaattcacg cacattggtt cggagttttt
    17641 gccccattaa ataggcggca tcttcttgca aatctgctcc acgttctaag gctttttggc
    17701 gaagaattgc cactcgggtt tccaattcag gtggctcaat ggtcgcacta ataccgccgc
    17761 ttaaacggga tttaatcgct gtgtcaattt tatcgatatt ttttggcaaa acgtcagagg
    17821 ttagaataat ctgctttctc tgctcaaata aagcattgag tagatgtaaa aactcttctt
    17881 gtactttcgg tttattggca agaaattgaa tatcgtcaat cattaacaca tcaagcgagc
    17941 ggtagaattt tttgattttt tccgcatcgt tattggaact gttgatcgcc ttaataatat
    18001 cacgataaaa acgttccaaa tgaatatata gcacccgagt acccggtgtg cgtttaacta
    18061 attcattgcc gatagcgtgt aataagtggg ttttgcccaa accggtgccg gcataaaacg
    18121 agagtgggtt gcaatggctt tcgcctaaat tatccaccac ttgttgagcc actaatttag
    18181 ctaattggtt tgagcgacct tgtacaaaat tatcaaaggt ttgatttgga tttagcccgg
    18241 ttttaaagcc ggtattgctg aattctgaac tctcgttttt tagatttggg ctgacctttg
    18301 gctgttctgt cggtttaatc ccaactttta acgtaaccac caaattatca tttttcgcca
    18361 aaaaacgggc aagctcggta atttccgata aaaatttatc ttttacccag ttttcaacaa
    18421 attgattttg tgcataaagt gtaagttccc cattctcaga actcgcttgc agaggacgca
    18481 gccaagtgct gtaatcagtt ggtgagactt tcgtttgtaa gtgattaagg caatcagacc
    18541 aaagggaaga cacaatttgc tccaaaatta ttgttattaa aggtcataat gatacctgaa
    18601 aaaaggggag aaatcttgca aatttttgag agattttatg ggggcttgga agcgatttta
    18661 attggcgaac aagcggtcgt tttttgttga aatcttgcaa attgctaaca aaaaatgacc
    18721 gcttgcttag tatgatgtgt gatggagttg attaaatatc cgtattctcc ggcaagaacc
    18781 caccgctttg gtgagcccaa agtctggcgt aaacaccgtt ttgagcaagc aattcttcgt
    18841 gcgtgccttg ttcaacgatt tcgcctttat ctaacacgat aagtctgtcc attgccataa
    18901 tggtagagag gcggtgggca atcgcaacca cggttttacc ttccattaat tgcgtgagat
    18961 tttcttgaat tgccacttct acttcagagt ctaacgcact ggttgcctca tcgagtaata
    19021 aaatcggagc gtcttttagc atcactcggg caatcgcaat ccgttggcgt tgtccgccgg
    19081 aaagttttac ccctcgttcg ccaacgtgtg catcaaaacc ggttctgcct ttggcatctt
    19141 gcaggtttgg aataaattca ctggcggcag cttgttcaac ggctttgatc atctcttctt
    19201 cagtggcgtt tgggcgaccg tacatcaagt tttcacgcac agagcggtgt aacagcgagg
    19261 tgtcttgagt tactaaacca atttgtgagc gaaggctttc ttgggtaata tcacggatat
    19321 tttgcccgtc aatcgtgatt gaaccgtctt gaatatcgta aaaacgcaat aataaattgg
    19381 tgagcgttga tttacctgca ccactacgcc cgactaagcc gactttttcc cccggtttta
    19441 tagtgaggtc aaaatctttc agtagcggtt ttttcggatc gtaggcaaaa tccacattct
    19501 caaatttaat ttcgcctttg gttacattta acggtttcgc atcgatttta tctaccacat
    19561 tgtgtggttt ggaaagcgta atcataccgt cttgtaccgt acctaaattt tcaaatagac
    19621 gagcaaattc ccacataatc cattgtgata agcctttaat gcgtaaagcc aaagcggttg
    19681 aggtggcaat cgcccctgca gttactacgc ttgaacccca aagccataaa ccgatacccg
    19741 cagttgaaat tattaatgcc atcgaggtta gattagttac ggtttcaatt acagtcacta
    19801 aacgcatctg tttatgcact gtcaccataa atccttccat cgactctttc gcataggcag
    19861 attcacggtt gccgtgcgag aagagtttga cggtggcaat gttagcgtaa gcatcggtaa
    19921 ttcgaccggt cattaaactt ctggcatccg attgctcttg agcagcttgg gctaatttcg
    19981 ggacaaagta gataatggtt gccgctaatg agatgaccca taaaataaac ggcacgaata
    20041 accagccgtc aagttgtaat aaaatcacgc tggaggtggt gaagtaaacc agcacataca
    20101 ccaacatatc ggcacaagtc ataatcacat cacgcacgga aagggcggtt tgcattactt
    20161 ttgcagacac tcttcctgca aattcgtctt gatagaaacc taaactttgc ccaagcatta
    20221 agcggtggaa gttccaacgc aaacgcattg gaaatacccc ttgcagagat tgaaagcgaa
    20281 tgctgctggc aaggtaaaca aacaccactg caagtagggc aataaaaaac ataccgataa
    20341 tcgtccagcc tttttctgcc caaagttctg ttggcgagta tttattgacc caatcgacta
    20401 aatcgcccat aaagcgaaac agaaccgctt cgataatacc gacagctgca actaatacgg
    20461 tcagtagtaa gatataaaac cgcattcctt tagtggcatc gtaaataaaa ggaatgagac
    20521 ctgattttgg agttttcggc atttcatttg gataggtttc cacccttgcc tcaaaccatt
    20581 taaacagttt ttcaaacata aatttgtgat ttccgaataa aaatgcaggg gcaaatagcc
    20641 atttgccccc gaaaaaatgt gaaaaaatta tggattaagt aatttttcgt ctaaggctaa
    20701 atcttcgttg cgatttatac caatgccggc agctaatacg ttgcgggcaa tttgatgtgc
    20761 ttcttttaaa gaatgctctt tgtaagagcc acattgatat tcattcagct cagggattgc
    20821 cgatacatca ggaattttat gtaacgcatc ttccattgat gccgtccaag ctttgacaac
    20881 ttcttctgct gaaggcgatc caatcagtga catataaaaa ccggtacgac aacccattgg
    20941 tgaaatatca atgatctcca cttgttcgct attgaggtga tcacgcataa aaccggcaaa
    21001 aagatgttcc atcgtgtgaa tcccacgcac cggtagaata tcaatattcg gacgacagaa
    21061 acggagatcg aacacggtaa tggtatcgcc tttcggtgtg gtcattgttt ttgcaacacg
    21121 cacggctggt gcgttcattt tggtgtgatc tactttaaaa ctatctaata aaggcatttt
    21181 ttactccatc aatattattc cgcaattcct tgatcccaag ccggggcttc atcaggtagt
    21241 ttgcgctgta agaaaaatcg tctgtttggc tgggcttgag gcttcaccac tttagtgtaa
    21301 ggggtagaga actcaatacc gccatttaat aactgcgaca ttgtgccgga gttcatactt
    21361 acaccttgca ggctcacgtc catagtgtaa cctgaagctt gccagaattg ggtattggtt
    21421 ctgactaagt gcttgtattt atcttgaata ttgacataaa taagcactcg atcgcctaac
    21481 tcacttagcc ctaaacggct gactattccc acctgcattc cacggtaaag caccggtgct
    21541 tccggctgaa taccgttagc attggtggtt tcgacaataa tggggaaacc gttggcatag
    21601 gtggttttta ccgtatcggt atctgcaaga acaaattggt tttgagcttg ccctgaaccg
    21661 acatcaaccg taatgtaatt ttgtagtgct gcatctaaat ttttaaagcc ggaggtactg
    21721 atttcaggcg agataacatt aaatttactg ccggcttttg caattaacgg atagtatttc
    21781 ctttgaatgt aagcggtcgc ttttatctgt ttttttgcat tttgtagctc aagtttttca
    21841 atttgaccta cggttaagcc catatattta atgtccattc cttcgcttaa cttactcgca
    21901 tcttttgcaa tcagcgtgag ataagtattg cccgaagtgg ctttctcctt acttgcataa
    21961 agcgttttat tgccttttga accgccatca tcaaagctga tcgccccttt taaggtacgc
    22021 attaatggag ctgtagtgat attcacgcct ttgagtgaca catcaacact cgttgccggc
    22081 tcaatccaga aacggctttt ctcggttaat agatgacgat aatttggctg gataaatagc
    22141 tcaacctcaa atttttgttg tttcggggtt atttttaaca cctcgccgac ctgaaaatca
    22201 cgatatagca ccaaagagcc ttcgctgata ccagataatg aatctgccga aagggtagtg
    22261 gtggcttttt tatctaaggt agccatgcct gattccgcac tttctatatc tttataaagt
    22321 gcatattgtt ttttcgggct accgtcattt ttaccgttaa ttaagcgaac accgcctttt
    22381 aaccattcag atggtgaacc ggcgtgaact cttaacccat ctagccccac cgacatatca
    22441 atgttggata tcgcaacaaa tttgctgtta ctcccaatca ggttgcgata aggcggataa
    22501 ataatgacat caaaacgtac tttgtctaac tctaggctac gtttgacgat ttctccgatt
    22561 tgcacatcgc tatagtaaat cccctgattg gtatctaccc cataggcttg aggagcaatt
    22621 aagctaaagc taagtaaatt cggtaaactt aatagataat cggcttcgtt ttgtaccaca
    22681 aattccgatt gaggttctcc ttcccccggg tgaacctcaa aatagacacc acgcagcagc
    22741 tcacctactt tcgtcagctg ctctgtgttt aaggagaatt tcggctcttt gagcaagatt
    22801 ttagtttggg aacgtagtaa attttcataa cttgggtcaa ttaataaaac cccatcaatc
    22861 tgtttatgct gccctgattc ttgctgtggc acaccgttgt cttttacttg cggtaatttt
    22921 agctgcgaaa gcataccaat ttgcacattt tggtgaaaaa caccagtctc attaattttt
    22981 aaattatgtg taagcggtag ttttacgttg atttcaattc cacgtttagc tgatttcaaa
    23041 tccggatata gctcaaattt ctgtccttgc tcggcaattt ccatattatc aggcgaatca
    23101 aaagcaaccg caccttgtac taccgaggca aggctgtcca tattgatttt aataccttgt
    23161 aaatttacat cagcgctaat accgctaata ttccaaaatc ggctctcttt ttttactaaa
    23221 tgagcgtatt tttgattaat gacgacatca atttcgattt ttttctggtc tttggtaaaa
    23281 cgataatcgg caatattacc cactggcact ttacggaaat aaacactcgc tccgacagta
    23341 atagagccta tgtcatcaga gattaaacgg atcagtaaat cgccatcgct cacggtaata
    23401 gccggaggat cttcttctgc aataaattca tcaacgaaat cgccttcacc gggaagtagg
    23461 gtaatatagt taccagaaac aatcgcatct aagcctgaaa cgccagccaa agaagcactt
    23521 ggttgcacta accaaaattt agtctgtttg cgtaaaatac ttttggcttc agggtttatt
    23581 tctgcttgca cttccacttc ttttaaatta tcgacaaaat aaacacgctt aacctgacca
    23641 atctgcaagc cttggtaacg aatagcggtt tttccggcag taatgccatc acctttacta
    23701 aatcgaatcg tgattgtttc accttgctct tttaaaattt ggaaaaatag caaagcacca
    23761 ataataaaag caactattgg taacagccaa aaaggagaaa ttttgcgagg ctgccggatt
    23821 tgggcatcta caacagtgtg ggtattttct tccatcgtca ttttaaatta gggaaaccta
    23881 tatagaacaa taccgaagac ccaaagggac ttcggtaata gaaataagtc aaaataagaa
    23941 atattatttt ttctcatcac agttggttaa attactgcat ttaccataca gatataaact
    24001 gtggttagtc aattccattc cgtgtttttc actgatttca cgttggcgac gctccatatc
    24061 aggatcttta aattcgaaca ccttaccaca atccatacaa ataatatggt cgtgttcgtg
    24121 gttcatattt aattcgaata ctgctttatt cgcatcgaaa ttatggcggg ttaaaatgcc
    24181 ggcttcttca aattggttta agacacgata aaccgttgct aaaccaatgt ctgagccttt
    24241 ttctaacaga atcttataaa tatcttctgc tgcaaaatgt tgcatttcat cacgaatatc
    24301 ttgcattaat gcaaggatag tcaaacgagg ctcggttact tttaagccta cctcttttaa
    24361 acgtttaata tttgcttcag acatatatgc cacttattta tctttatcca aaatagttat
    24421 tatgcgagtt ggtctaagca catttcttct ttcaactgct cgcaccattt attaacacgt
    24481 tcagtggtta attcaggctg acgatcttca tcaatacata agccgacaaa agtatcatca
    24541 tcaactaagg cctgagaaac ctcgaaagtg taaccggcag ttggccaatg accaacaatc
    24601 acaccaccat ttggctctac cacatcacgc acagtaccca ttgcatcaca gaaatattct
    24661 gcataatctt cctgatcacc gcaaccaaaa attgcaacga ctttgccgtt aaaatcaatc
    24721 tcttttaggg taggcataaa atcgtcccaa tcggcttgcg attcaccata ataccaagtt
    24781 gggatcccaa acatcagaaa atcgtatgct tcaatatctt cttttgtgct tttggcaatg
    24841 tctcgaatat caattaattc agcccctaat tttttctgaa tcatttttga aatattttct
    24901 gtattgcctg tatcgctacc gtaaaataaa cctacaactg ccattgctac tacctatttg
    24961 tgagataatt atttagaatt gtttcaatta actgcccgcg tgaaacacct tgttcagacg
    25021 cctgttcctc taataacttt actaaattcg aatgcagttt taattctacc cgttttaaac
    25081 cggaagattt atctcgtttt agttggttac gtttattgat tcgaagttgt tgttctctat
    25141 caagaggatt tgtacgagga cgcccaactt ttggtacagt cgcaaacaga tctaaggtta
    25201 tacaatctga atcttgtttt gccattttgt tttactattg ggctttagct aatcctcagt
    25261 tttaatgaga atgataagct acttttaaag tgtgaactat atcaaaagtt caatcatttg
    25321 aaaagtaaat tacaggcaaa acaagcggtg tttttaggtt taaaatttgc aaaaaccata
    25381 aattacacat tatgagttat gatttttctg aagcgtgaaa ttagcttata atgaaaccga
    25441 ataacgttat gaaaaaggag atagtgtgtc gaatatccat ttagcgattg ccgctgattt
    25501 tacgctggca gaaaaattac ttgaagcatt agcaaatcaa gatttaggga ttgaaaatat
    25561 ttcagccgtt gagcttgagc cgtttggtga agagcagaat ttacgctttg gggcaaaagc
    25621 agtcgcacaa tatgcgttag atgaagtaaa ttgggcggaa tttagccatg ttctatttgc
    25681 cggcaaaatg gcacaagcgg aagtgttggc agaagcggtg aaagccggct gtgtgatttt
    25741 agatttatac ggcattaccg cactcatcgg cgatgtaccg gtagttgtgc caagtgtaaa
    25801 tgatgaaaat gtcgcaaatt tgcgtgagcg aaatatcgtt gctttagcca atccgcaaat
    25861 ttcacaactg gcgttagcct taaagccatt gttgaacgag ccgttaaaac aggtgtgggt
    25921 aacctcactt ttaccgtctg cctattttgg cgatgaaaaa gtcaaggagc ttgccggaca
    25981 aactgcccgt ttgttaaacg gcattccgtt tgatgaaaat gcggaacgca ttgcctttga
    26041 tgttgtgccg gctaatgtgc aaggagaaga gaaaagtctg ccgttctcaa aagcctttga
    26101 actgcaaatt gcaaaagttt taccaaattt gaccgcttgt actaccttcc acagcgtgca
    26161 agtgccggtc ttttatgggg tttcccaaat ggtgtcggtg cagtctgaat atcagttaga
    26221 tgctaatgcg ttaagtgaag cttggaaagc cgaaaattgg ctgaatttta atgaaaattc
    26281 agtgattaca gcggtgaaaa atggcgaaaa cgaagagcaa aatgcgttag aaatcagtca
    26341 gttattggcg aaatccgaac aggaagtgca gttctggacg gtcgccgatg aacagcgttt
    26401 cagtctggca tttttagcgg tgaaattact aaaattagtt ttagcgtatt aagtgcttgc
    26461 aaaagtattt attccgtgat aaaaatcgtc aacgcccgag caaccgattg cttgggcgtt
    26521 gtcattttgt ttaaacaccg aaggtcttat gttagaaaaa ttatttcagc tcaaagcaaa
    26581 aggcagtaat gtaaaaaccg aaattatcgc cggtattact acctttttca caatggttta
    26641 tattgttttc gtcaatccgt ctattttagg cgtggcggga atggacaccc aagtagtgtt
    26701 cgtgactact tgtttaattg ccgcttttgg tactatcgca atggggttat tcagtaattt
    26761 accgattgct cttgcaccgg caatgggctt aaatgccttt tttgcattcg tagtggtgca
    26821 aaaattaggt tactcgtggc aagtgggtat gggggcgatt ttcttaggct ctgtcggctt
    26881 attcctatta actgtattac aagttcgtta ctggtttatg tctgcgattc cacttggttt
    26941 acgtgtaggt attggtgccg gtatcggttt attcattgcc ctaatcggtt ttaaaaatat
    27001 gggcttggtg gtgccaaatc cggcaacgct tgtggcacta ggtgatttgc acgacccgaa
    27061 agtgttaatg gggattttag gctttttcat cattgttgta ttagcggcga aaggtattca
    27121 ctcaggcgtg ttaatttcaa ttgtgattgt taccgctctt gccttagcct ttgacccggc
    27181 ggtgagcttt aacggcataa tgtctatgcc accaagcctt ggggcagttg tggggcaggt
    27241 tgatattgcc ggtgcttttg atgttgcctt actcgggatg attttctcct ttatgttggt
    27301 aaacctgttt gactcttccg gcaccttaat tgcggtgact accaaagcag gctttgcgga
    27361 tgaacaaggg cgtttcccga aaatgaaaca agctctgcta gtagatagta ccgctgcaat
    27421 ggcaggctct tatatgggaa cttcagcgat ttctacctat attgaaagtg gctccggcgt
    27481 ttcagttggc ggtcgtaccg gcttaactgc ggtggtagtt gggatcttat tcctattaac
    27541 cattttcttc tcaccacttg cagggttagt acctgcctat gcaactgcgg gggcattggt
    27601 atttgtagga attttaatgg catctagctt aattgaagta aaatgggacg atttaactga
    27661 agctacgccg gcatttatta ctaccgcaat gatgccgttt acttactcca tcactgaagg
    27721 gattgcattc ggctttatca gctactgcgt aatgaaagcc tttacagggc gttggaaaga
    27781 aatcaacctt tctgttttag tggtttcact tctctttatt gctaaatttg tgtgggtggg
    27841 ttaagctcta cccccctctc cctgattttt cttctaaacg aagaaaaatc tatccctctc
    27901 ccacaaaggg gagagggtat ttgattcatt atctatgtgt ttcgtgtatt ccgaggtaaa
    27961 acaatgtcta attcagttca aaaacttctt tttatcatca attctgctcc ttacggcaat
    28021 gaaacgtttt tcagtgcgtt gcgtttggca ttacaaattc aagaacaaca taaagccaat
    28081 acggaaatta aacttttctt aatgtcggat gcagtcaccg cagggctggc aaagcaaaat
    28141 ccggcagagg gttatcatat tcagcaaatg ctggaaattt taaccgccca aggggcaaac
    28201 gtaaaattat gcaaaacctg tactaatgct cgagggatta cagatttgcc tttagccgat
    28261 ggggtagaga ttggcacatt aattgaactg gcagattgga caattcaagc agataaggta
    28321 ctgaattttt aatgcaaaat attgatgttg tggtgattgg tgccggtgcg gcagggctgt
    28381 tttgtgctgc ccaactgggg caagctggca aaaaagtggt ggtgttagac agcggtaaga
    28441 aagtcggacg taaaatttta atgtctggcg gtggtttttg caattttacg aatttagacg
    28501 taagtgccgg aaattacctt agccaaaacc gccattttgt gaaatccgcc ctttcacgtt
    28561 atacccaatg ggattttatt tcgcttgtca gccactatgg cattagctat cacgaaaaag
    28621 agctagggca gttgttttgt gatgaaagct cgcaacaaat tgtcgattta ctacaagcag
    28681 aatgcaacaa aggcaaggtt gagattctgt tacggcaagc ggtcatttct gtggaaaaag
    28741 ttgcaaattt ttttgaaatt tcgaccgctt gtggcaagtt ccaatccgaa cacttagtga
    28801 ttgcaaccgg agggctttca atgccggctc tcggggcaag cccttttggc tatcaacttg
    28861 ccgagcagtt tggtattcct gttgtgccac cacgtgcaag ccttgtgcct tttacttgga
    28921 aagagagcga taaatatttt gccgagcttt ccggcattgc actgccgatt actgtttccg
    28981 ccaatggcaa aagttttagc aatcagatgt tgtttacgca cagaggctta tccggcccgg
    29041 caattttgca gatttccaat tattgggaat tgggggaaac ggtagagatt gatctgctac
    29101 cttcgcagtc cattaccgat atattgagcg aactacgcca atcttcgccg aaattacagc
    29161 taaaaaccgt attatctcgt tatttaccta aaaaattggt tgaagtttgg ctggaacaga
    29221 aattgctgac cgataaagtg attgccgatt tgagtaaaaa agatctgacc ttattagagc
    29281 aatttatcca ccattggcat ttcttgccaa acggcacgga aggctatcgt acagcggaag
    29341 taaccaaagg cggtgttgat accgactata tttcatctaa aacgatggaa gcgaaaaata
    29401 cagcagggct ttattttatc ggcgaagtgc tggatgttac cggctggctt ggtggttata
    29461 atttccaatg ggcgtggtca tctgcttttg cctgtgcaga agggattatt gaaaaaagca
    29521 aataactaaa aaagcaaata actaaaaaac caaacaaaaa ggcgaacaca attgttcgcc
    29581 ttattttatg ctgaattatc ttgcacggaa aataatgcgt gctttgctta aatcgtatgg
    29641 agtcatttca accgttactt tatcaccggt taaaatacga atgtagtttt tacgcatttt
    29701 gcctgaaata tgtgcggtaa caatatgacc gttttctaat tccacacgga acattgtatt
    29761 tggtaaggtt tctaaaatcg taccttgcat ctcaatgcaa tcttctttag ccatttattc
    29821 ctctttaaag ttttaatttt tatatgatgc cattcggcga aaaacggcgg atattatacg
    29881 cttattcgct caaattacaa tcgtttatcc atttgagtgt aaactattta cgcttaatcc
    29941 aacggcgacg tgagtgaaaa cgctgggttt gggtttttac ttgactcata agtggttttg
    30001 ggcttatctg tacatgatga attttacgac gaaaatagta gttaatgcta cttgccaaca
    30061 atatacctgt gagtagcaaa ataattattt ccccataaag ttgatgaaat tgttgctcta
    30121 ctcgtgcttt agtagtttgc ccatattctg catcaaacgt gacgcgtaaa aagccaacca
    30181 acgcctgttg agaaaatatt ggctcaacaa tttgctgagt tttggcagat tgctctgaat
    30241 cgagcaatac ttttaaatct ttcgcatttt ggctttgagc cagtagcacg ccatttggtg
    30301 aatagatatt ggcatcaata ataaaatctt ctttggcaaa actatccaac gcatcaacca
    30361 gctcatcggt tttggcattt ttaactaaca aaaacgaaaa aatatttgct tgctggcgaa
    30421 ccaataggtg tgaaaggttt gatacttgat taatgctggc caattgtgag cctagcttaa
    30481 attggtttac gcccattaaa ataaccgcca cgatcccaca gcagagtagc gtaatccctg
    30541 ccagcaaaag cgttttcgtt attttttcac gactaatgta catcgaaatt ccctcaaaat
    30601 gatgcgtgat tgtagcacgc ttttctgtta gattagtgca gtaaatttaa acaacctaaa
    30661 ataagacaat gacaaacaca atttttatct attcaaaaac cttaaacgag cgtgaaattg
    30721 aacagttttc acaacaaacg gcagcaattt tgctgaaaca agcggtctat ttagactaca
    30781 aaattgcatt tttttccaca aatttaaccg cttgcgagct gcgtgaaacg gcacagaaaa
    30841 tcaatgcgga tattagcgat ctcactatta ttccaacctt aaaccaaggc ggtttgctat
    30901 taatggatat ggattccacc gctattaaaa ttgaatgtat tgatgatatt gccaaacttg
    30961 ccggcaccgg cgaggtggtg tccgccatta ctgccagtgc aatgcggggc gagctggatt
    31021 tcgagcaaag tttacgcaag cgagtcggca cgttggaaaa tgcatcggaa agcattttgc
    31081 aaaaagtgcg ggaaaatcta ccgcttatgg acggctttga gcagatggtt gctattctta
    31141 aggaacacgg ctggaaatta gcgattgcgt ccggtggatt tgattacttc gccgattact
    31201 taaaacaaaa atacgggttg aattttgcgg tctctaacca actggaaatt attgacggta
    31261 aattaaccgg caaggtgtta ggcaaagtag tggatgctca acataaagcc gataccttac
    31321 agaatttagc gacaaccttt aatattccac caaatcaatg ggtggcagtc ggcgatgggg
    31381 caaatgactt accaatgtta aaaaccgcca gtttaggcgt tgctttgcac gctaaaccaa
    31441 aagtgcaagc acaagctgat tttgtggtaa acttcgggga cttaacggca ttatgtttat
    31501 tacttaatgc caatcattta tttcaacatt aattgagagg aacaacaatg ccatcatttg
    31561 atattgtatc tgaaatcacg atgcacgaag tgcgtaatgc ggtagaaaat gccaatcgtg
    31621 tattaagcac ccgctacgat ttccgtgggg tggaagccgt tattgagtta aatgaaaaaa
    31681 atgaaagcat taagctcacg accgaatcgg atttccaatt agagcagtta attgagattt
    31741 taatcggctc ttgtgtaaaa cgtgggatcg agcatagttc attagatatc cctacagaaa
    31801 gtgagcatca cggtaaactc tattccaaag aaattaagct caagcaaggg attgagtcag
    31861 atatggcgaa gaaaattacc aagctgatta aggattctaa aatcaaggtt caagcccaaa
    31921 ttcaaggcga gcaagtgcgt gtaacgggca aatctcgtga tgatttacaa gccgcaattc
    31981 agctagtgaa aggggcagat ttagggcagc cattccaatt taataatttc cgtgattagc
    32041 aattcctgca attaatgatg acaagtggaa aaattcagca aaatttgacc gcttgcatta
    32101 ataattcaac ataaaaggaa gagatgatga gcgagcaaac agaaaagaaa ggctggttta
    32161 aaaaagccct tgagaaatat gatgcctttt gcgatgagct aggggtaaat caaggtgctt
    32221 gccgaggttg tgtccctgtg gtgaagtttg accctgaacc ggaaaaagag cagccagaaa
    32281 aatcagaaaa taaaacatag aaaaaatgca caatggtaag atacattgtg cattttttat
    32341 aggattttta attggcgtga tgatgggcaa aatattgctt aactccgcca tctttcttgc
    32401 aaggattctg aatatcagta gagtaactac cgttaaaaca aagagcagta gcattcgatg
    32461 gtttaatctt ttcctgttta gttagggctg gcggttgagt attggtttca ctaatataga
    32521 tcgttttagg ttgagaatag tctatatttt tgtcgccatt tacgacttga acgggggtgt
    32581 tcgagctgca agctacaacc gatgctgaag ccaatgtaag tataatgata tggtgttttt
    32641 tcatgggtaa tttccgtttt tatattttta attgagagaa tgttaaaaag ggctgatttc
    32701 tcaaccctta aagttatgcc ttaagcattt ttattaaaag tttgtcctaa ctgaatttca
    32761 tcatttaata caggaattaa ctgctctagt tgatcttttt caaattcgct gagattgccg
    32821 ataggtagaa ctttttccac accatttgta cctaaacgaa tcgggtaagc aaagaatgcc
    32881 ggagaggttt cgccattggc attatctaca taagcataac gaatgacatc ttccccgatt
    32941 aaggctctca ctaaaccaag tgcaaattct gctcctgctt gagccataga taaggttgct
    33001 gagccaccac ctgcttttgc ctcaaccact tcagtaccgg cgttttggat acgatgagtt
    33061 aattgctcga tttgttcttg agtgaactca agttttaagc catttactgt tgcttgtgaa
    33121 agcagtggaa gaatagttgt gccggaatgt ccgccaatca caggcactct tacatatttc
    33181 acatttacgt ctttcgcttc agccacaaag gtattcgctc gaataacatc taatgttgta
    33241 acaccgaaaa gtttattttt gtcatacaca ccggcttttt tcaatacttc tgccgcaatc
    33301 ggaataatgg tgtttaccgg gttagtaata attgcaatgc aagctttagg gcaaactttc
    33361 gctgcttttt cgactaagtt atgcacgata gtggcattcg tattgaataa atcggcacgt
    33421 gtcatccccg gcttacgggc aacaccagca gaaataacga ccacatcggc atcttttagt
    33481 gcctcagtcg gatcttcacc tgcaaaaccg gttactttta catcagttgg aatatggctt
    33541 aaatccactg caattcctgg agtaacaggg gaaatatcgt aaagagataa ttcagattta
    33601 gccggtaaat tgagttttaa taataaggcg agtgattgac cgattccacc tgcagcacct
    33661 aaaagggcaa cttttttact ttgacacata aaatttctcc taaatgttat ggaagtttag
    33721 accaatttag tctaagccaa ttttttgggc gattcaaacg gcaaatctca tttttgagac
    33781 atagagcaaa tttttagctg atttttatgg gttttattga tttatttgca taaataagca
    33841 agaattatga atatttttaa gtttttgtga ataagagtgt gaaagtggac aagatagata
    33901 gtttatcaga agcgtttaaa tcgctgttaa aggaagaaaa attcggctcg caaagtgaaa
    33961 ttgttgccgc actacaagag atgggctttg ataatatcaa ccaatccaaa gtttctcgaa
    34021 tgttatcaaa atttggtgca gtcagaaccc gtaatcctaa aatggaaatg gtgtatcagc
    34081 taccagtcga attaagtgta ccgactacct ccagcccact taaaaatttg gtggtagata
    34141 ttgatcataa tgatgcgtta attgtggtca aaaccagccc cggtgcggct caactgattg
    34201 cacgtttgct cgattcaatg ggtaaagccg aaggtatttt aggcactatt gctggcgatg
    34261 atacgatttt tataacgccg gtacgcaatg tgcaaattga aaaattggtg aagaatgtga
    34321 cacagttatt tgaaacatca ttatagaata agtaaaggag gacttaatgt tctccttatt
    34381 ttttaggaga ttattatgca catttttata acaggtggta cgggttttat tgggcgtgaa
    34441 ttaatccagc aattaaaatc tgaaaatcac cactttacac ttcttactag agatacagaa
    34501 gcgaaaagtg atgatttaca gattaattat tgctattcac ttgatgaact tgttgattta
    34561 aatgattttg atgcagtaat taaccttgcc ggtgagccga tttttgataa acgttggaca
    34621 gacgaacaaa aacagaaatt gattgaaagc cgggttaacc taacgaataa gctcagtcaa
    34681 ttaatgaatg caagctctaa ccctccgcat acttttctct ccggttcggc aatcgggatt
    34741 tatggcgatt tgcctccttc tgcaaatttt tatacagaat cgaccgcttg ttatcaagat
    34801 tgctttacca accggctttg ccaacagtgg gaagccgctg cactaaaagc cgcaagtgat
    34861 aaaacccgag tgtgtttaat tcgtaccggc acggtatttt cgcccgaagg cggagcatta
    34921 aagaaaattt taccgcttta tcgatgcgga ttaggcggaa aacttggttc aggcaaacaa
    34981 tattgggcgt ggatcagccg ccgggatcac gtacaagcgg tcatttttct gctcaaaaat
    35041 gcaaattgtt cgggtgctta taattttgtt gcaccaaatc cggtgagaaa tgaagaattt
    35101 aatcgtattt tagcgaatgc tgttaatcgc ccggcattct ttactgtgcc tgaatttgcc
    35161 ttgaaattag gcttaggcga acgagcttgt ttagtcttag ataatcaaca gctcattccg
    35221 gaaaaactac tcgcagccag ttttgtattc caagatccga ttttaaccga gaacgttttc
    35281 ttaaacccat aatttaggct ataatgctgt ataaaagcac agattaaaag gtgattatgg
    35341 atttctcatt attattagac ggtttaaatg acaagcagag ggaggcggtt gctgccccga
    35401 ttggtaatta tttagtgtta gccggggcgg gttcgggcaa aactcgggtt ttaacccatc
    35461 gcattgcgtg gctgattggg gtggaaaatg tgccggaatc caatattctg gctgttacct
    35521 ttaccaataa agcggcggcg gaaatgcgac atcggattga gtacactctt tcccaatcgg
    35581 gcgataatcg attgttcgga atgtgggttg gtactttcca cagcattgcc aaccgcttac
    35641 ttcgttccca ctatttagat gcggatttac cgcaagattt ccaaattatg gataccgaag
    35701 atcagcaacg tttactcaaa cgtttactga aactgcataa tattgatgag aaacattttc
    35761 cgccaaaaca cgttgcgtgg tatatcaacg cccaaaaaga taaaggcaaa cgggcaaaag
    35821 atattgatca ctataacgat ccgaatgaaa aaaaattggt ggagatttac caaatctatc
    35881 aagatgcctg cgaccgagcc ggtttgttag attttgccga gctgttgatt cgggcttatg
    35941 aactattcaa aaccaaatca accattttgc aacgttatca acaacgtttt cagcaaattt
    36001 tgattgatga gtttcaagac accaacaata ttcagtacga cttaattcgt ttgcttgccg
    36061 gcgatgtcgg caaagtgatg attgtcggcg atgatgatca gtctatttat ggttggcgtg
    36121 gggcacaggt tgagaatatc caacgtttct taaatgatta tgacaacgct caaaccattc
    36181 gcttagagca aaattaccgc tctaccggca acattttaag ctgtgccaat gaattaattg
    36241 ccaataacga taaccgctta ggcaaaaatt tatggacaga tagcggtgat ggcgagcctg
    36301 tggatattta ctgtgccttc aacgaacttg atgaagctcg ctttgttgcc tcgcaaatca
    36361 agcaatggaa agaagacgag ggtgatttgg cggaatgtgc ggtgttgtat cgcagcaaca
    36421 gccaatctcg tgtgattgag gaagctttaa ttcaagcgaa tattccttat cgcatttacg
    36481 gtggaatgcg attctttgaa cgccaagaaa ttaaagatgc tctggcttat ttacgcttaa
    36541 tcgccaatcg tcaagacgat gcggcgtttg aacgggtgat caacacgcca accagaggca
    36601 ttggcgatcg taccttagac acactccgtc aaattacccg tggtcgccaa attacgctgt
    36661 ggcaagcaat tcaagtggcg gtgcaagaag aacaactttc agggcgtgcc acttcttcct
    36721 tattgcgttt tgtagagctg attaatgctc ttgatcaaga aaccgagcag atgtcgcttg
    36781 ccgaacaaac cgattttgtg attaaaaaat cgggtttata tgaaatgtat aagcaagaaa
    36841 aaggcgaaaa gggcgaagtt cggattgaaa acttagaaga gttagttacc gcaactaagc
    36901 agtttgtgaa acctgacgaa gcggaagagc tgaccgatct taccgcattt ttaacccacg
    36961 cctcacttga ggctggagaa gcccaagcct cgcaacacga agattatgtc gaactgatga
    37021 cgctacattc cgccaaagga ttggagtttc cccgtgtgtt tattgtgggc gtggaagaag
    37081 ggattttccc aagcggaatg agctttgatg aaggcaggtt gcaagaagaa cgccgtttgg
    37141 cttatgtcgg cataacccga gctaagaaaa aactgacgat tagctatgcc gaatcaagac
    37201 ggctttatgg taaagaagaa cgccacgttc cgtctcgctt tattgctgaa ttacctgaag
    37261 agcatattcg agaagtgaga ttgagaggct caattaaccg agcggcaagt tttaaccaag
    37321 ctaattcatt tgcaaaaaat ccgacaaaaa cgaccgcttc ctttttaaac gatgatactt
    37381 ggaaaatggg gcagaaagtg aaccacgcta aatttggaca aggcacgatt attaatgtgg
    37441 agggctcagg tgaagccacc cgtttgcaag ttgcctttgt cggcaacggc attaaatggc
    37501 tgattgccaa aatggcaaat ttagagagga tttaggcgaa taaaaagttt tttgcaggaa
    37561 tatagatggc gagatatatt gccccttaac cttaaactaa gggtaaataa aattaaataa
    37621 tgcaag
//
LOCUS       DANMGB010000003        37176 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.003, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000003 DANMGB010000000
VERSION     DANMGB010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.003"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(43..3072)
                     /locus_tag="PXG19_000111"
     CDS             complement(43..3072)
                     /locus_tag="PXG19_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL6065456.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            3250..4107
                     /gene="menB"
                     /locus_tag="PXG19_000112"
     CDS             3250..4107
                     /gene="menB"
                     /locus_tag="PXG19_000112"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL6065457.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            4190..6592
                     /gene="mrcB"
                     /locus_tag="PXG19_000113"
     CDS             4190..6592
                     /gene="mrcB"
                     /locus_tag="PXG19_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL6065458.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
     gene            6767..7273
                     /locus_tag="PXG19_000114"
     CDS             6767..7273
                     /locus_tag="PXG19_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL6065459.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            7332..8045
                     /locus_tag="PXG19_000115"
     CDS             7332..8045
                     /locus_tag="PXG19_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL6065460.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(8156..9160)
                     /locus_tag="PXG19_000116"
     CDS             complement(8156..9160)
                     /locus_tag="PXG19_000116"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL6065461.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(9248..10087)
                     /locus_tag="PXG19_000117"
     CDS             complement(9248..10087)
                     /locus_tag="PXG19_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL6065462.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            10277..11611
                     /locus_tag="PXG19_000118"
     CDS             10277..11611
                     /locus_tag="PXG19_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6065463.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(11691..12101)
                     /locus_tag="PXG19_000119"
     CDS             complement(11691..12101)
                     /locus_tag="PXG19_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6065464.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(12224..12901)
                     /locus_tag="PXG19_000120"
     CDS             complement(12224..12901)
                     /locus_tag="PXG19_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6065465.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            13019..13831
                     /locus_tag="PXG19_000121"
     CDS             13019..13831
                     /locus_tag="PXG19_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6065466.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(13879..14148)
                     /locus_tag="PXG19_000122"
     CDS             complement(13879..14148)
                     /locus_tag="PXG19_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6065467.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(14121..14798)
                     /locus_tag="PXG19_000123"
     CDS             complement(14121..14798)
                     /locus_tag="PXG19_000123"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6065468.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(14900..15157)
                     /gene="rpmA"
                     /locus_tag="PXG19_000124"
     CDS             complement(14900..15157)
                     /gene="rpmA"
                     /locus_tag="PXG19_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL6065469.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(15178..15489)
                     /gene="rplU"
                     /locus_tag="PXG19_000125"
     CDS             complement(15178..15489)
                     /gene="rplU"
                     /locus_tag="PXG19_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL6065470.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            15767..16765
                     /gene="ispB"
                     /locus_tag="PXG19_000126"
     CDS             15767..16765
                     /gene="ispB"
                     /locus_tag="PXG19_000126"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL6065471.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            16868..17614
                     /locus_tag="PXG19_000127"
     CDS             16868..17614
                     /locus_tag="PXG19_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL6065472.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            18031..18966
                     /gene="fabD"
                     /locus_tag="PXG19_000128"
     CDS             18031..18966
                     /gene="fabD"
                     /locus_tag="PXG19_000128"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL6065473.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            18983..19447
                     /locus_tag="PXG19_000129"
     CDS             18983..19447
                     /locus_tag="PXG19_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065474.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            19468..20190
                     /gene="fabG"
                     /locus_tag="PXG19_000130"
     CDS             19468..20190
                     /gene="fabG"
                     /locus_tag="PXG19_000130"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6065475.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            20309..21607
                     /gene="brnQ"
                     /locus_tag="PXG19_000131"
     CDS             20309..21607
                     /gene="brnQ"
                     /locus_tag="PXG19_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL6065476.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            21653..22477
                     /gene="mutM"
                     /locus_tag="PXG19_000132"
     CDS             21653..22477
                     /gene="mutM"
                     /locus_tag="PXG19_000132"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL6065477.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(22560..22994)
                     /gene="dtd"
                     /locus_tag="PXG19_000133"
     CDS             complement(22560..22994)
                     /gene="dtd"
                     /locus_tag="PXG19_000133"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL6065478.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(22969..23814)
                     /locus_tag="PXG19_000134"
     CDS             complement(22969..23814)
                     /locus_tag="PXG19_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL6065479.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(23816..25054)
                     /gene="proA"
                     /locus_tag="PXG19_000135"
     CDS             complement(23816..25054)
                     /gene="proA"
                     /locus_tag="PXG19_000135"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL6065480.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            25338..27221
                     /gene="mutL"
                     /locus_tag="PXG19_000136"
     CDS             25338..27221
                     /gene="mutL"
                     /locus_tag="PXG19_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL6065481.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(27240..27509)
                     /locus_tag="PXG19_000137"
     CDS             complement(27240..27509)
                     /locus_tag="PXG19_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6065482.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(27496..27762)
                     /locus_tag="PXG19_000138"
     CDS             complement(27496..27762)
                     /locus_tag="PXG19_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6065483.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            28202..29155
                     /gene="miaA"
                     /locus_tag="PXG19_000139"
     CDS             28202..29155
                     /gene="miaA"
                     /locus_tag="PXG19_000139"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL6065484.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            29224..29496
                     /gene="hfq"
                     /locus_tag="PXG19_000140"
     CDS             29224..29496
                     /gene="hfq"
                     /locus_tag="PXG19_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL6065485.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            29516..30901
                     /gene="hflX"
                     /locus_tag="PXG19_000141"
     CDS             29516..30901
                     /gene="hflX"
                     /locus_tag="PXG19_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL6065486.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(31123..>37176)
                     /locus_tag="PXG19_000142"
     CDS             complement(31123..>37176)
                     /locus_tag="PXG19_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6065487.1"
                     /translation="VIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAASILGGA
                     TLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDSITNPYN
                     YFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNNRKSRGK
                     PKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMRQSAAIA
                     DYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRRSIYDGQ
                     NNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINPDTAKVA
                     NNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNASKAWKSN
                     AISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANVSKANAT
                     AVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSGIRAAAL
                     GYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSSFAGDEN
                     VVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFNITADHS
                     GLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKDGSVGVK
                     GADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDGESKTRI
                     VYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFDAGKNIM
                     TQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSNVTLTED
                     GLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVTEVTTDA
                     FGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGKDGEPGK
                     VGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDGSIGLNG
                     TNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVATLNDGL
                     HFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLKDLNSAT
                     FKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIVNVKSGI
                     DGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKGFSIAAD
                     NGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGVKGADGT
                     VGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTRIVYEKP
                     DGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVVNNNGAL
                     TVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQDGEISA
                     TSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIITKEGNNV
                     TFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGSIGATGK
                     DGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPGENGKTR
                     IVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDKTASENF
                     KSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPSVTKGGI
                     DAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKGAQRVNN
                     NGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNELNIAGS
                     KNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALAAGNLYH
                     VTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAAASVGYQ
                     W"
BASE COUNT        10821 a         8167 c         7531 g        10657 t
ORIGIN      
        1 aaggagatgc tcgttcaatt aaatttgaac gagcattttt cgttaaaaac tcaatttaag
       61 cagccactca aaattagtct catttaaccg atattgcggt ttcaaattcg ggccgcaaga
      121 gtttgagcca atgccgctca ttttgtaatc gacacacagc acggtggaag ggctttctac
      181 caaatcataa ctgtggcttt tagtggttag ctcttcctgt gtgtaaggcg aaagattaaa
      241 actaaacggc tgtggagaag taacagttat cccatttgct tgcacataat gcgtaccgaa
      301 atggctgccg ttttcctgcg gtttgagata atcggtatga ttttctcggg cgctggtttg
      361 ataagctccg agtttcgcca aatggtattt gtcgatataa ctctcctgct cgccatagcc
      421 aaaatagctc acttggttat tccgtttatt caagaaaaac cgcaagccaa agcgaggtaa
      481 aaacggcaaa tgagcggggc gggttgcctg aacctgaatc gtcatttcgc cattcggggc
      541 aagatgataa ttcactttca gggttaaaat ccgactttga gcggttgcca caatgccaca
      601 ttcggcagta atgtttacgc cgtttttatc ttgcatcagt tcggtatgat acgccctggt
      661 gtaacagtta tcgtagccgg cttttttcca aaactcacga attaagcggt cgttatcggt
      721 tggggctcgc caaatattga aatccaacgg ttgctcaatt actgcctcgc cgtttttctc
      781 aatccggctg aaaatgcctt tgagtttatc gaaagtgtag cgatagtcgc cctgttgaat
      841 ccgccattca tttgcaaaat cttgcacaaa aatgaccgct tgcgggcgtg gattaagtgc
      901 tggagtgacc atcgcttgat gcagcgtgat ttggtcaaag cctaagtgat gccctttttc
      961 caacagagcc gtgctttcat ttaaagaata atcaagggtt aaaagttgca atttgccgtt
     1021 tggttcgggc agcgttagcg gcaaacaagc ggtctgattt ggctgacaat ttaccaaaca
     1081 ttgtccctgc agggtggttt cgccgttttc gctgaaacag taatgcacgg tcagataatc
     1141 agctaagtcg ctgaaatcca actgattttt cagccaaatt ttgcccgctt ttaactcagc
     1201 tcgcaccggg cgattcacat ttttcacttc taacaaatta gagtgtggca cacgctgttg
     1261 ggaaaccaag ccgtccatac agaaattgcc atcgtgcaag gtttcgccga aatcaccgcc
     1321 atagccgtat ttttcggtct tctgttcggc acttagctca gagttgggga gcagaggagc
     1381 atggtcgcac cattcccaca caaagccacc gcacgcaccg ctgtagcgtt ggaaggtttg
     1441 ccaataatct tccatatcac cactcgaatt gcccatcgcg tgagaatatt cacacaaaat
     1501 aaaaggtttg tggttggcag agtcggaaaa atattcctct aaccgctcgg tgcttgggta
     1561 catctcgctg tataaatcga ggtttgaaag atcgttttga tgtgccgaat gttggtaaat
     1621 cgaaccttcg tagtgagtta aacggcttgg atcccgttgt tttacccaac gggctgcgac
     1681 ttcaaaattt tcaccaaagc cggattcgtt accaagtgac caaataatga ccgaagtgcg
     1741 gtttttgtct cgctccacat tggcaatgtt gcgatctaaa atcgcctgtt tgaacagcgg
     1801 atctcttgca aaataacaga aattatcgac cgcttgttgg cgaatttctt cctgtttgtt
     1861 cgggtttggc acattcagga aaatgctgtt ttccggactt tcaatataca ctgcactgga
     1921 gccgtgagat tcaagatcac tttcggcaat cagataaaaa ccgagctgat cgcacaattc
     1981 actaaaccac ggagcgttcg ggtaatgggc ggtgcgaata gcgttgatgt tatgggcttt
     2041 cattaagcgt aaatccacca acgcttgctc acggctaatg ctgtagccgg ttttcgggtc
     2101 ggaatcgtgg cggtttaccc ctttaaattt aatcggggcg ttgttgaata gcatcacgcc
     2161 attttccaca cgaatctgac gaaagccgat tttttgctca ataatttcgt tttggtagct
     2221 caagcatagc gtgtagagtg tcggatcttc cgcattccac aaacacaaat tgcaaatttc
     2281 ttggcaaaaa tcaccgcttg tttgctcgca gactaagcgg ttttcagggt cgaaaagttg
     2341 aaaatgcaca gcttcggtgt aggtggaaaa ttgtgtttcc accttgagtt ctgcctttga
     2401 aagatcagcg tttaactggt agcggataaa gaaatcttgc aggtagtttt gctcacgttc
     2461 caaaatataa acatcacgga aaatgcctga cattcggaat ttgtcttgat cttccaaata
     2521 actgccgtca caccatttta gcaccaccac gacgaggctg tttttgccct gtttaagctg
     2581 tttggtgatg tcaaattcat tggtgctgtg gctgatttgc ccgtagccga caaattcgcc
     2641 gtttacataa acaaacaggc acgaatctac gccctcaaaa tttagcaaat agcgtttgtt
     2701 aggcttgggg ttaaacgtga tttcacgctg atacaccccg caagggtttt ggtgtggcac
     2761 ataaggcgga tcaaacggaa tcgggtagtt gatgttagtg tattgatggg catcaaagcc
     2821 ttgagtttgc cagttagacg gcacggggat ttggtgggta aatttggtgt tgaggaaatc
     2881 ctccggcaga tcgtgcggac ttggatagaa attaaacttc caatcgccat ttagcaaagt
     2941 aaataactca gattgttccc gttccaactg attcggcgtt tgccctttag caaaaggaat
     3001 aaaataagcg tggtgtagcg tggtattaag gtgcaacaca ctcgggtctt ggtagtaatt
     3061 cggtaacgac ataaaagccc tatgatcaaa aagatataaa tacgaataca ctttaattct
     3121 cttataaaat agggcaatca actatgtgaa aaattgtgag gcggatcaca aaataatttc
     3181 ctcacctttt tccttcgatt ccgttataat cacaagaatt ttttatgtca tttttcaagg
     3241 aatttaccaa tgttatatcc aagcgaagaa tttttatatg caccggttga gtgggttgat
     3301 cacagcgaag gttacaccga tattcgttac cataaatcaa aagacggtat cgctaaaatc
     3361 accattaatc gtccggaagt gcgtaatgct ttccgtccgc aaacggtaaa agagatgatt
     3421 gaagcctttt ctgatgcccg ttttgatgaa aaaatcggcg tcatcgtatt aaccggtgaa
     3481 ggcgaatatg cgttctgtgc cggcggcgac caaaaagtgc gtggcgatta cggcggctac
     3541 aaagatgaaa gcggtgtgca tcacttaaat gtgttggatt tccaacgtga tattcgtacc
     3601 tgcccgaaac cggtggtggc aatggttgcc ggctatgcga ttggtggtgg acacgtttta
     3661 catatgttat gtgatttaac cattgccgct gacaatgcaa aattcggtca aaccggcccg
     3721 aaagtggggt catttgacgg cggttggggt gcaagctata tggcacgttt agtcggtcag
     3781 aaaaaagcgc gtgaaatttg gttcttatgc cgtcaatata atgcacaaga agcgttagat
     3841 atgggcttaa tcaataccgt tgtgccttat gctgatttag aaaaagagac tgtgcgttgg
     3901 tgtcgcgaaa tgctacaaaa cagcccgatt gccttacgtt gcttaaaagc agcattgaat
     3961 gcagattgtg acggtcaggc tggcctgcaa gagcttgctg gtaatgcaac aatgttgttc
     4021 tatatgacag aagaagggca agaaggacgc aatgcgttca acgagaaacg tgagccggac
     4081 ttcagcaaat tccgccgcaa tccataattg acggcaaata caagcggttc gattttgcaa
     4141 aaaatttgca aaaatcgacc gcttaccttt tctaatttaa gttaatttta tgtcagatgt
     4201 tgagttaaac gagcagagcg agcaagagcc tgagcaaaaa ccgaaaaagc gaaactattt
     4261 cctttcaacc ttattcaaaa tcggggtgat aggagcttgc agtatggctt tttacggcat
     4321 ttatttagac ggtaaaatcc gtagcaaaat ggatgggcag atatgggaat taccagctga
     4381 ggtgtatgct cgtattgaaa gcattaaaat tgaagacaac ttaacgcttg agcaaaccaa
     4441 acaagcgttg ctggataacg gctatcgtca agtttctcaa gttgcgacac caggcgattt
     4501 caaaattgaa gaaaatcagc tggtgttgct acgccgagct ttcccgtttc cagaaacacc
     4561 ggaatcgcaa cgagtgcttc gtttaacttt caaacaagat aaattaactt atattgaaga
     4621 tttggtgcag ggtaagttga tcgaggagtt ccgcttggat ccgaaattac tggcgttact
     4681 gcattccgat agcgatgaag aacgtcaagc attacgctta caacaatacc ctcgcttgtt
     4741 aattgagtca ctgattttaa ccgaagatcg ccgcttttat cagcacgatg ggattagccc
     4801 aatcggtatt gcccgtgctt taatcactaa ctaccaagct ggcagaacag tgcagggtgg
     4861 cagtacctta acgcaacagt tagtgaaaaa cttgttctta agtaatgaaa gatcgttggt
     4921 gcgtaaggta aatgaagcgt taatgtcggt gattttagac ttccgttacg ataaaaaccg
     4981 cattttagaa acctatctca acgaaattta tttagggcag aacggtagct accaaattca
     5041 cggttttgca ttggcaagcc aattctattt tggtcgtccg atccaagaga ttagcttaga
     5101 ccaaattgcg ttattggtgg gaatggtaaa aggtccatca ctgtataacc cgtggcgaaa
     5161 tccgcaaggt gcggtagagc gacgtaatgt ggtgttgcga ttattgctgg atcatcaagt
     5221 gatcaatcaa gaactttacg ctctgttaag ctcccgcccg cttaatattc gtgaaaaagg
     5281 cacgatttac cgtgagcaac ctgcctttat gcaggcatta accattgatt tgaaaaatga
     5341 gttaggcgaa attaagtcag ctcaactttc cggtactaaa atttttacga cccttgaccg
     5401 taaacagcaa cgttcagccg aacaagcagt gattaccggt ttggaagatc tggaaagtaa
     5461 aaataaaaaa gtcagcgatt tgcaatcggc tattgtcgtg gcggaatacc gcacaggtaa
     5521 agtgagggcg atagtaggag accgcttaac ccaatttgcc ggctttaacc gtgcgattca
     5581 gtcaaaacgc caaatcggtt ctttagtcaa accatcggtt tatgcgattg ccttggcaca
     5641 gcctgaatta ttccgtttaa atacaccgat ccaaaataaa caaatttcaa ttaaggttgg
     5701 ttcaacctac tggacacccc gtaactacga ccgcagtttt agtggctcgg tgatgttaat
     5761 ggacgcctta gtccgctctc tgaatattcc aacggtgaat attggtatga aagttggctt
     5821 aaaaaaagtc attgccaaac aaaaagagat gggctgggat aatgcggaaa ttccgcctta
     5881 cccatcaacc ttgctaggtt catattcgat ctcgccttac gatgtaaccc gctcttatca
     5941 agtaattgcc aacgaagggc tgaaaacacc attaaccacc attgaggcga ttatttcgca
     6001 caatggcgaa atgttctatc agcgagatag cggcaaagtg agcgagcagg tgcttccacc
     6061 ggaagctgcg gttcaaacaa tgtatgcgat gcaacaggtt gtggaacgag gtacggctcg
     6121 tagcttacaa aacgattttg ccaaactgaa attagccggc aaaaccggta caaccaataa
     6181 cgctcgagat acttggtttg tgggaattga tggcgaacac gtcacaaccg tctggctggg
     6241 taaagataac aatggggata ccaacctcac cggttcaagt ggtgcattgt atgtgtataa
     6301 gcaatatctt gagagagcct tgcctcaggc gtatagatta ccgaaactta atacgatgca
     6361 atgggtgggg attaatagct atggtagctg gaattgcgat agtggcagac aaattccagt
     6421 ttggcgagat aaagggcaac gttattgtac cagtgcaggt aatgtagtgg ctacagaaaa
     6481 accaagtgtt tgggatgcac tttcgctgaa aaaagaaaat atcgaggcta aagcagaaga
     6541 agctgaaggg aagcaaccaa tccctactga agaagttgca ccaattgaat aaaaataaat
     6601 ttgatagcca ttatcattca agatacacaa gctgatagat tctacctata aaaagtatat
     6661 attataacta tttgctagtt ttcattttgg attgtaatat agtaataaat taaataagca
     6721 gtatctaatt taatttttta agattaacaa ttaagaggag catattatgg caatgtcaaa
     6781 tatcggttta gataaagaaa tcgcaaaaaa attagcagat gagttaaatg gtttattagc
     6841 tacttaccaa gtgttttaca ctaatgtacg tggctaccat tggaatgtac gtggtgtgaa
     6901 cttctttgaa ttacatgcaa aatttgaaga aatctacgat gatttagtga caaaagtaga
     6961 tgaaattgca gaacgtattt taaccttagg tcacacacct caaaatgcgt tcagccaata
     7021 tttaaccaag tcacaaattc aagaacatat tggtgtttca gctgcacaag aatgtttacg
     7081 tggtacttta aatggtttca aaacattact gggacaacaa cgtgaaattc ttgctctagc
     7141 aaatgatgca aacgatgaag gtactgcttc tcaaatgagt gattacatca aagaacaaga
     7201 aaaattagta tggatgttca ctgcagcttg tgctgaatgt tcagactacg cacaaggttg
     7261 ttcttgtaac taagttgcaa taatataatt aacccccgat aatgaaagat tatcgggggt
     7321 tactttttca gatagctatg tcgcaaggat ttcaatttaa acagtttttt attcggcacg
     7381 acagatgtgc aatgaaagtc aatacagatg gtattctatt gggagcgatt gctcacataa
     7441 aagattgtca gaatatttta gatctgggta taggttctgg tttagtagca cttatgcttg
     7501 ctcagagaac agatgattgt tgtcacatta ctgcgttgga acttgaacca aatgcctacc
     7561 aacaagcggt cgaaaatgcc caaaattctg catgggcaaa tcggatttcc gttttgcaag
     7621 gtgatgtgat gcagcaggca tttgaacaga aatttgactt gattgttagt aacccacctt
     7681 attttgcaga ttcacttgca gctcgaacca cagagagaga tttagctcgc tcaattagcc
     7741 attacagcca cttgaattgg ctggcaaaag caaaaccatg gttagcagag aacgggaaaa
     7801 ttacactgat tttacctata gcagctgcag aaaaattagt tgaccaaagt gaacaaattg
     7861 gattgtattg tgttgaacaa tggttaattt ttaccaagag cggcaaattg gctaaacgca
     7921 gtatagtgag ttttagttta aacaagcaaa agcgtgaaca taaagagctg atcatctatg
     7981 atctagataa ttgttacact actgagttta aaagacttac ccaagatttt tatttgaatt
     8041 tttaatttac tccccgggtt agtgttttcc acaaatcttc ttcagctacg atgatctagc
     8101 cttaagctaa aaagcagatt accacccaag ataatccgct ttttagactt agctattatg
     8161 ccaaacttgc taccattacc gctttaatag tgtgcattcg attttctgct tgctcgaatg
     8221 ccacattcat tggcgattca aacacctctt cggttacttc aatgccgttt gccagtgccg
     8281 gatatttttc ggcgatctct ttaccgactt tagtttcact gttgtggaac gccggtaagc
     8341 agtgcataaa tttcactttc gggttgtcgg ttgcttgcat taattcaggc gttactcggt
     8401 aaggcattaa taaatctata cgttcagtcc agctctctag cggttcaccc attgaaaccc
     8461 aaacatcagt atgcacaaaa tcgacacctt taattgcagt ctcaatatct tcggttaccg
     8521 tcattcttgc ccccgattca gctgcaaatt tttcacacat tttcacgaat gcatcttccg
     8581 gtaataaggc tttcggggca caaattcgca cgtccatccc caatttcgcc ccaatcaaca
     8641 ggagtgaatt acccatatta ttgcgagcat cgccgatata gacataactg atttggctaa
     8701 gcggtttttc gcaattttcg atcatcgtta gcacgtcagc caacatttgg gttgggtgga
     8761 attcatcggt taagccgtta aacaccggca cgccggcata atcggcaagc tcttgtacta
     8821 ccgattgttt aaagccgcga tattgaatcg catcatacat tctgcctagc actcgggcgg
     8881 tatctttcat tgattcttta tgcccgattt gcgaggagtt cgggtcaata taggtaacgt
     8941 gagccccttg atcgtaagct gctacttcaa aggcacaacg agtacgggtc gaggttttct
     9001 caaaaattaa ggcaatattt ttgcccttta atttttgctg ctcagtgccg gcatatttcg
     9061 cccgttttaa atctcttgct aaatccaaca aaaagcgaat ttcacgctca gtgtggttta
     9121 ctaaactgag taaatgtctg ttttttaagt taaatgccat tttgtttctc cctgtaaaca
     9181 ttaaaattta ttttatgcaa aataattgca taaaaattca cttatagcaa acagaatttg
     9241 cttaccctca ttcgggtaaa taaaactcgc ctttgccgac taaaataacc tctccgccaa
     9301 caaaaatctt cccgttttga tcgactttta ataacaggcg attcggccgt tgaatttcat
     9361 caccttgtga gatctgaagc tggattggta ttttgccttg tgcaatgtgc caaccgccta
     9421 aatttgccgc tgccgaaccg gtgccggggt cttcgacaat cgaaccttgc gattgaaaaa
     9481 acagtcgcac tttcgcctca tttccctcac gacaccaaac atatacactg tctttcaaaa
     9541 atgctttttc agccagattt gcatttattt tgcacttttc gaccgcttgt tgagaagcta
     9601 actcaaccaa taactgctcc acgccggtgt ttacataaca aggctcggac gcaatatccg
     9661 caacattcag ccccaatatt gaggcacatt ctgcacggct tagcggtgtg ttttccaggt
     9721 tcacaccatt ggttaaagca aaagtagtca cattatgttg atgttgaatc gctaccaatc
     9781 cggcattagt ttgcaagcga taggttgttg gaaaatcaaa ggcggaatgc aacacaaaag
     9841 ccgctccaac agttgggtgg ccggcgaacg gcatttcata atcaggcgta aaaattttga
     9901 gttttttgac cgcttgtgaa tcggtggaag attgaataaa taccacttca gaaaggttaa
     9961 attggcgagc aataagttgc atttgtaagt cggttaatcc gtccgcttca taaaatactg
    10021 caagcgggtt gccgccaaaa tggcttgttg caaacacatt caccagcaaa taaggatagc
    10081 tctgcattta tcactcctta cataaactta aagccacatt gggcgaaaat tctaccattt
    10141 tggtggcgaa tcgtaaaatt ggaaaattta tcggtatccc tctttagagt taactatttt
    10201 tgatttatct caaagtttta aaaaaaagat taggtcatac ttctttctag tgattatttt
    10261 ttaatttgag gttcttatgc tttatgcaga atttttactt ttattagcct ttttatatgc
    10321 aggtagccgt tacggtggca tcggtttagg tgtggtttcc ggcatcggct tatttgttga
    10381 agtgttcttc ttaggaatgc cgctttccgc tccgccaatt agcgtgatgc tcgtgatttt
    10441 ggctgtagtt acttgtgcct ccattctaga agccgctggc ggtttgaaat ttatgttgca
    10501 agttgccgaa cgcattttgc gtagcaaccc aaaacgtatt acctttcttg gcccacttgt
    10561 cacttatctg atgaccttaa tgctcggcac agggcattcg gtttactcta ttatgccgat
    10621 tatcggtgat attgccttaa aaaataaaat tcgcccggaa cgcccgatgg cagcagcctc
    10681 tgttgcttca caattaggta ttaccggtag cccactttct gctgcagttg cctattactt
    10741 aaccgaaatc gttaaattac cgggctttga aggggtgact ttattgaatg tagtcggcgt
    10801 aaccatcacc gcaaccttct gtggtgtgat tgcgatgtca ttatatagct tacgtcgtgg
    10861 taaagagttg gaagacgatc ctgagtatca acgccgtatg caagaccctg agctacgcaa
    10921 acaaatcgag caaacgagtg caacgtcttt agacgaaaaa ctaccggcaa gtgcgaaaaa
    10981 ctcggtttat ctgttcctag ccgctattgc aaccattgtg attattgcaa tgattccggc
    11041 tattaaacca acggttgctg ctacaggaaa agttgccggt atggatcaaa tcattcaaat
    11101 cgtgatgcta actttcgggg gtttaatctt aattttaact aaaaccgacc cgaaaaaagt
    11161 accaaacggc atcgttttca aatccggtat ggtagcaacc attgcgattt tcgggattgc
    11221 ttggatgagt gatacttact tcacccatgc aatgccagcg ttcaaagaag gggtaacaga
    11281 aatggttcga gcccaacctt ggacattcgc cttcgccttg tttgcggtat ctgtagtagt
    11341 aaacagccaa gccgtaaccg caaaaatgtt attaccggta ggcattgcaa tgggcttgcc
    11401 tgctccatta ttagttggtt taatgccggc aacttatgct tacttcttta ttccgaatta
    11461 tccgtctgat atcgcaaccg ttaactttga cgtaaccggt acaactaaaa tcggtaaata
    11521 ttacttcaac cacagcttta tggctccggg tttagttggc gtaattactg cctgtattgt
    11581 cggtatcgcc gttgcaaatg tgctaattta attttaacaa aaaaacaagc ggtcagatta
    11641 agtaaatttt ttaccaaatc tgaccgcttg attatttact gcaaaaccaa ttaggctttg
    11701 ttaaagagtt ttgcatctaa cgagtatttt ccgccaccga taaaaatata ggttaagaat
    11761 aataccgaat acacgcctgc taattcaccg ccgtttaata aaggtaatag cacattgcct
    11821 tgagctccgt gagcaataaa gaacgcgtat gccatcatac ctgaaaggat aaacgctgtt
    11881 tggcgggtaa atagacctaa aataaagaaa attccgccca caatttccaa aataccgcct
    11941 acaccataaa tggaggcaag gggtacactg ccgtttccgt tggtcatcga cattggaaat
    12001 tcaaaaaatt tcgctgtgcc gtgtaataaa aacatataac cggcaacaac acgggtgatt
    12061 aaaaacgcta aaggttgtaa atttgttaaa gtagagttca tttgctttcc ttaaaataaa
    12121 ttgtgatata aaggtcaatt gattgaggca ggcattctat tttaaaaacc tatacttcac
    12181 aatccagccg tcatgaaata gattatttac cattaataaa caattaggct ctcgctaaca
    12241 cccaaacctg aatttctact actccagctt tgagtaactc ggcacaaatt acatttaagg
    12301 tggaacctgt ggtgagcaca tcatcaacaa tcgccactcg tttataggct tttaacggtt
    12361 gatagaaaaa tgccccacgc agatttttcc gccgttcagc agcggtcaat tctctttgtg
    12421 agacggttgc tctcacacgt tgtaaactct gggtatccag cggaatctgt aaccacttcg
    12481 ataaccaatc acacaataat tcgctttgat taaaccctct tttccaatgt ctgtgccaaa
    12541 aaagtggtac aggcataatc acttcaggca agctcagaac ctgttccctt tgagcttgtt
    12601 tgattgccag cagcaattgt cgggcaaggg cttgatccca ccaatattgc tgctggaact
    12661 taaattgatg tacccaatgt gaaagtggcg ctcggtattc atttaccctc actaatttat
    12721 gccacttcgg ttcatttttc aaacaatagc cacaagcgtt tcgaaactcc accgcactca
    12781 ttccacaatg acgacaataa ggggttggtt ttagcaattt ttggcaatgg ctgcaaatgc
    12841 cttgcacgcc aatagcgagt ggatgattac aatgaaagca acggaagccg aataaattca
    12901 catttcctcc ttttatttgc agattatcaa atttagcctt attttttccg gctatttttg
    12961 tgacatcgct cgaaaaaaga gtaaaatctc attatcagta aataaaaagg aaaccgagat
    13021 gaaatccctc caaaaaccga tcaaaattgt ctttttcgat attgatgaca ccctctatgt
    13081 aaaacataaa gcctatattc caaaatcaat taccgagcag gtattacctc gtttaaaagc
    13141 caaaggcatt attccggcca ttgccaccgg cagaaatcac ggctgttttc ctgaagctct
    13201 caaaccttat ttaaaccctg aaatcggttt tgagctgttt gttaccatta acgggcaata
    13261 taatttctat aaagatcaaa taattagtga ttattcgtta agccgtgagc aaattgaacg
    13321 tattatcgaa aaagcgaatg ctttgggtat tctgtatgcc tttattacgc caatgacgat
    13381 tgcagtttcc gaaaccaatc cgattgtgca cgaagcggtt ttaccgatca caccgaatta
    13441 tttgatcgat ccacactact acgaaaaaga gaaaattgtg caaatgttac tgttctacac
    13501 cgaagagcag aaacaagcgg tcgaaaatag tggcattttt gcaaatgatt taaaagaggc
    13561 tcgctggcac cccaatgcgg tagatattct gcgaaaagaa aattcgaaag ctcgtggcat
    13621 tcaagatgta ttagcaacct tgaatattga gattgaaagt gcgatggcat ttggcgatgg
    13681 tattaacgac ttggaaatgc tcccgaccgt aggtgttggt gtggcaatgg gtaatggcgt
    13741 gccggaatta aaagcggtgg cagatttcat caccaagccg cttgaggaag acggcattct
    13801 atacgctctt gaaactcttg aggtgattta aaagcaagcg gttgtaagtt tttctccatt
    13861 tacaaccgct tgtagtttct aattacgcct aaatagctta tcgcctgcaa tcgctaaaat
    13921 cgccccactg acgaccacca acgccccaag ataactgatc caattcatat ccggcttggc
    13981 aaaaatatgc ggataaaaat agtagctaag gttggaaaag atcatcgtaa aaatcggcaa
    14041 catcgtggtt acaatgctaa cctttgaagt atcccaatga ttcaacgcct caccgtatga
    14101 accgtagcca attaaggtgt tcaacagcaa taaataaagc aaccccacag aaaaccatcc
    14161 tcaagattgc ctaactgtgc cggtgaggca aacggtaaca tcagcagaga acagccgatg
    14221 taaataataa acagcacttg ctgagagtta aatttcgcta ataataattt ttgagccacg
    14281 ccgtatagca cccaaatcaa gctggctccg gcactcaata acactccgag agcgtaggtg
    14341 ttgagctgta aaatttcagc aaatttatcg ttaaaaaatg cgacaagccc tgcaatcaat
    14401 aacacaaatc caatcttttg aaacaagccg aacttttcct taaacaataa tacgcctagt
    14461 agaatcatcg aaaatggagc taactgccac aatacttggt taatggtggg cgaaacatag
    14521 tgtagagcct ctgcaaacaa aaagaaattt gccgacagac cacacacccc taacaaaatt
    14581 aaaccgagtt cttttttgct acaagcggtc aatttgggta aacgttttgc aaatcctaga
    14641 atcagcaata gccctactga tgccacaacg aacctaaccc aaactaaagt ttgggcatct
    14701 atcactttca atacttgctg ggcggcaatc ggtagcgttc cccaggtcat tgctgcggtt
    14761 aatgcaagtg aaaagccaag taaggggcgt tgtttcatcg tggaaattcc tttttctatt
    14821 ctatgtttct atattttaga aagattgaga tacaaaaaaa ccccgccatt ggcgaggtct
    14881 cttattgatt ttgaaatgat tagtcagcaa tgatgcttac atatttacgg cttttctcgc
    14941 ctttcacttc aaatttaact ttaccgtcag cagttgcaaa taaagtgtgg tctttaccca
    15001 tacctacatt tgaacctgcg tggaatttag taccacgttg acgaacgata atgctacctg
    15061 ctaatacaga ttcaccaccg aaacgtttaa caccaaggcg tttagcttca gaatcacgac
    15121 cgttacgagt tgaaccacca gcttttttag ttgccatctt ctagatctcc tctgaaatta
    15181 tgcttgaatc ccagtgattt tcacttctgt gaaccactga cgatgacctt gttgtttacg
    15241 gctgtgttta cgacgacgga acttaacgat tttaactttc tcgccacgac cttgtgctac
    15301 aacttcagcc actacttttg cacctgctac aaccggtgca ccgattttaa catcttcacc
    15361 gttaacgacc attaacactg agtcaaattc aactttctca ccagttgcaa gttcaagttt
    15421 ttctaaacga actacttgac cttcacttac tcggtgttgt ttgccgccac tttggaaaac
    15481 tgcgtacata tttactccgc tatgtgccaa ctgcttttgc ttttaggcac taaattaatt
    15541 cataaaaata gggttgcaat tctacggaaa aagattcgaa agagcaagag cgattttgag
    15601 aattttttga aatttgcaaa aaatggtaaa aatactaccg cttgtttcaa ctgcgactaa
    15661 aaaacaatag actgctccga ttttacaaca aaatcataat tcttttttga acacaggcta
    15721 aattaaggta gaatctactc aattttcgtc ttactttatg gattcgatgg ctgtgcaact
    15781 tttttcttta gaacaaattc aagcccttgc gaatgaagat atgcaagcgg taaatgccga
    15841 aattttagct caacttaatt ccgaagtgct actgattaac cagctcggac attatatcat
    15901 cgcaggcggt gggaaacgta ttcgcccgtt aattgcggtg cttgcggctc gtgccttggg
    15961 ttatcgtggt aaaaagcata tcacggcggc tgcttttatt gagtttgtgc atactgctac
    16021 acttttgcac gatgatgtag tcgatgaatc cgatatgcgt cgtggcagac caaccgcaaa
    16081 cgcccatttt ggcaatgcgg ctagtgtatt ggtaggggat ttcatctata cccgttcgtt
    16141 ccagatgatg acggatttag actctctgcg tgtgttaaaa gtgatgtctg ccgccaccaa
    16201 tgcgttggca gaaggggaag ttcagcaatt aatgaacgtg aacgacccaa acaccactga
    16261 agcgaactat atgcgggtca tttacaataa aaccgcccgc ttgtttgaag ccgccactca
    16321 atgcgtggcg attgcggctg atgcttctga ggaaattgaa accgcattaa aaaattacgg
    16381 ttgctactta ggcacggcat tccagctgat tgacgatatt ttagactact ccgctcaaag
    16441 cgaaagttta ggcaaaaacg taggcgatga ctttgtggaa ggtaagccaa ccttgccatt
    16501 gctccacgca atgcacgctg ccgacaaagc aggcaaaact actcaagcag agctgattcg
    16561 caatgctatc gaaaacggcg gcgaattgga acaaattcca caagtattgg caattatgca
    16621 agaacatcaa tctctggatt atgccatgca aaaagcccgt gaagaagccc aaaaagcggt
    16681 ggattcatta ggggttttac cggaaagcga gtacaaacaa gccttggttt cattggcgta
    16741 tttatcggtg gatcgctctt attaatttgc aaaaaatcat ataaatttaa ccacttgtag
    16801 gggcaaatga tatttgcccc ataacctata attcttttgg gcaaatgtta tttgccccaa
    16861 cataacaatg actgaacaaa accaacgacc ccaagaacat attgaaagcg tacgagcgag
    16921 acgccgtgct caaaatcaga aaaaaggccc gaatgccccg tttgtgcgtg agaaattaac
    16981 gctgccaaac ggacataaca aattactgct gcactcttgc tgtgcccctt gctcgggtga
    17041 ggtaatggag gctattcacg cctccggcat tgagtttacg atctattttt ataacccgaa
    17101 cattcacccg ctgaaagagt atttgatccg caaggaagag aatattcgct ttgccgaaaa
    17161 gtggggtatt ccgtttatcg atttagacga tgactacgaa aacgaccgca aagagtggtt
    17221 caaaaaagcc aaaggaatgg aatgggagcc ggaacgaggc attcgttgca caatgtgctt
    17281 tgatatgcgg tttgaaaaag cagcggaata cgctcacaac aacggtttcc ctgtatttac
    17341 cagttgctta ggcatttccc gatggaaaga tatgaaccaa atcaacgact gtggtcaccg
    17401 tgcagcagcc aaatttgatg acgtggttta ctgggactac aactggcgta aaggcggcgg
    17461 ctcacaacga atgatcgaaa tcagcaaacg tgaacgtttc taccagcaag aatactgcgg
    17521 ttgcgtctat tcgttaagag atagcaacaa atggcggttg gaaacagggc gtcagcggat
    17581 tgaaatcggt aagctctatt actcacccga ttaaatgtta cttttctttg cttcgccaaa
    17641 gaaaagtaac caaaagaaag gcgacccgaa cttcgcttag ttacgatttc cttaacggaa
    17701 aatttgtaaa ctcgctacgc tcaaacagta caaattttcc tagaaatcgc aagtcgctca
    17761 gacgggacaa gcggtacatt attcaaaatt ttttacaaaa tatagtgatg tactcttccc
    17821 ttctgaaccg cccgaacgtg tttgaattgg taggaaaatt tactctgagc gaagcgaatg
    17881 taaattttcc gtgaaaccaa ttcaaactaa gtgaggataa gcggtgaagt aggggtgttt
    17941 ctttggttac tttctttgca catgcaaaga aagtaacgaa aactcagata tagatttcaa
    18001 cttaaaaatt tacagaagga ataataacaa atgtcaaaat tcgctatggt tttccccggt
    18061 caaggctcac aagcggttgg aatgcttgcc gaccttgcgc cacaatatcc aatcgtggaa
    18121 gaaaccttca aacaagcaag tgatgtgctt ggctatgact tatgggattt agtgcaaaac
    18181 ggtactgccg aagagttagg gcaaacccac cgcactcaac ctgcgttgct tgcctcaagc
    18241 gtggcacttt tccgcatttg gcaacaaaaa ttccctgagc aaaaaccagc cgtgatggca
    18301 gggcatagtt tgggtgaata ctcagcgttg gtgtgtgccg gtgtgttgga tttccaagat
    18361 gcgattaaat tggtcgagtt gcgtggtcgt gcaatgcaag aagccgtgcc ggcaggcagc
    18421 ggtgcgatgt ttgcgattat cggtttagat aacgaaagca ttattaaagc gtgcgagcaa
    18481 gcagcaagcg agaccggtga aattgtctct gcggtaaact ttaacagccc ggggcaagtt
    18541 gtgattgccg gcacaaaagc agcggcagaa aaagcaggag aattgtgtaa agccgcaggt
    18601 gcaaaacgtg cgttaccatt agcggtgagc gtaccttcac actgtgcttt aatgaaaccg
    18661 gcggcagaaa aattagccga agccttgcaa aatattgagc taaatcaacc gcttgtccct
    18721 gttatcaaca acgtggatgt ggcagtggaa acagatgccg ataccattcg taatgcactt
    18781 gttcgccaac tttacagccc tgttcgttgg acggaaaccg ttgaaaaaat ggcacaagat
    18841 ggcatcacta ctttatatga aatcgggcca aacaaagtcc taaccggttt agcaggtcgt
    18901 attgtaaaag aattatcagc caaagcggta aatgatgttg ccagctttga ggcggttgag
    18961 gcttaatttt cgggagcgta aaatgagtaa agaaacccta tttatgctaa taagtgcatt
    19021 gattgcctta gtgattttac ctttagctta tactgttggt atcgctaaag aaacattagg
    19081 cggaaatatg ggaatgttat ccattgctgc cggttgctca tttttagcct attttttaag
    19141 tctaaacccg aaaattcgcc acgcctttat cggaggttca gctattacag ctgctgctat
    19201 tcaagcttgg gtattatatg gtgtgctatt aagcgaaaat gaccccaaaa gtgcggtcgt
    19261 tttatttcaa atttatctgt ttagtagttt agggccactg tttttttcag ctatttgggc
    19321 atttactcgc ccacgttgga tttaccctaa acaaggtagt gcggtgaaat atgccttatt
    19381 tggtggctta acgaccgtga taaactactt gattaccctt tttatttttt atattctgac
    19441 gttataacgt catactaagg agaatttatg agcaaaatcg cattagttac aggggcaacc
    19501 cgtggaatcg gcaaagcgat tgccgaagaa ttggtagcaa aaggctacat cgtagtcggc
    19561 accgcaacct ctgaaaaagg ggcggaatct atttcagctt atttaggcga gaacggcaaa
    19621 ggcttagtgc taaatgttgc cgatgcagag tcgattgaga gcgtattaaa gcagatcaaa
    19681 gagacctttg gcgatgtgga cgtgttagtc aataacgccg gcattacccg tgacggctta
    19741 ttaatgcgta tgaaagatga ggattggttc gacatcattc aaactaactt aacttcggtt
    19801 tatcgtttat ccaaagcggt attacgcccg atgatgaaaa aaggcggacg cattatcacg
    19861 atcggttctg tggtcggctc aatgggcaac ccggggcaaa ccaactactg tgctgccaaa
    19921 gcaggcttag ttggtttttc taaatcttta gcgaaagaag tagcaagccg cggcattacg
    19981 gtaaacgtgg ttgctccggg ctttatcgcc actgatatga ccgatgagct aaccgaagat
    20041 cagaaaaatg cgattttaag ccaaattcct gccggtgaac tcggttctcc acaagatatt
    20101 gccaaagcag tcgctttctt agccagcgat gatgcccgtt atatcaacgg tgaaaccatt
    20161 cacgttaatg gcggtttata tatgagctaa tccgctacaa gcggtctttt ttcaaccgag
    20221 ctttgtaaat tcagagttcg gttttgttat ttgttatttt gtgttatcac ctgctttata
    20281 ggtataggtg aaaaagtgtg aatatgttat gactagaaat acattagtag taggcttttt
    20341 attgtttgct attttctttg gtgccggcaa tctgattttc ccaccaaaat taggttatga
    20401 aagtagtaca gaatttttct cagccatttc aggctttgtt ttaactggag tagggcttcc
    20461 tctactcggt attatcgtca gtgcatttta taatggaggc tataaatctg cattagacaa
    20521 aatccaccct tggttttctt tagcattcct aacttctatc tatttagcga tcggtccatt
    20581 ctttgccggt ccgcgcacgg cagcaactgc ctatgaaatg gcgataatgc cgtttttagg
    20641 ggattccagc caagtgtcaa tgttaatttt taccttaatt tactttgcct ttaccctatg
    20701 gttagcgcta aatccaaata aaatggttga tcgcattggt gcaattctta ccccgatctt
    20761 gcttataacc atcattggat tagttattcg agccggcttt attttagata ccgatccaca
    20821 aatcactacg cctaatacga atgaacaatc ttactttttt aaaggtatgg ttgatggcta
    20881 tctaactatg gatgcacttg cttcgttagc ctattcggta attgtattaa atgctattcg
    20941 tgggaaaggg gtaagccaag ccgcattaca acgccaaaca gtttctgccg gcttagttgc
    21001 agcagttgct ctagctgtaa tttatatttc attgggttgg attggtaata atatgccaat
    21061 tagtgcaaac acactttcga tgttatcaga aagaaaattg gatctaggta cttacattct
    21121 taacactgtg actacccaag ccttcggtga actcggacgt agtgtcttag gagtgattgt
    21181 ttcacttgcc tgtttaacca ctgctgtcgg tttagccgta tcagtcagtg aatactttaa
    21241 tgaaattttc ccgaaaattt catataaagt ttatgctatc ttatttactg tgattagttt
    21301 tactgttgct aaccaaggat taaaagaagt tattagcaaa tccattccgg tattattagt
    21361 tctctaccca atagcaatga ctgtcatttt aatgttgctg attaatttag tgattaaact
    21421 tccgttgtct gcacaacgtc tatcactcct attagtgaca attgtagcga tagcttcagt
    21481 tgccggtgtc gggtttaccg aaaacttgcc tctaaaatcc tactcgatgg aatggctacc
    21541 tttcgctatc attggagcta ttattggagc aattatccac ccgcttaccg gtcgaaagca
    21601 taaataaagt aaaggcagtg agcattcact gcctcttttt taggagagaa taatgcctga
    21661 attacccgaa gttgaaacca gcgttcgtgg tgtatcgccc tatttggttg ggcaaactat
    21721 tgaacaaatc atcgttcgtc agccaaagtt acgttggacg gtgagtcctg aattaagcca
    21781 aatggcaggg gcaaaaatta ccgcagtaga aagacgtgcc aaatatctga ttatccgcac
    21841 cgacaaaggc gatattttgg tgcatctggg aatgtccggc tcgctcggga ttttgcaaga
    21901 acgtcaacaa aaagaaattg gcaaacacga ccacgtcgat cttattaccc aaaacggcac
    21961 aattttacgc tataacgacc ctcgcaaatt cggctgttgg ctatgggcag aaaaagcaga
    22021 agatcacgaa ctgttgcgta aactcgggcc tgaaccgctt tcaaacgatt tcacagcaga
    22081 ttacttattt gcaaaaagcc gcaaaaaaac gaccgcttgt aaaaccttta ttatgaccaa
    22141 tgaagtggtt gttggggtgg ggaatatcta tgcgtgcgaa agtttattta tggcaggcat
    22201 tcaccctgag cttgcagcac aaaacctgac taaaaaacag tgcgaacgtt tagtaaaaac
    22261 catcaaagaa gtgctgacta aagcgattat tcaaggcggc acaacactga aagattttat
    22321 ccaacctgac ggcaaaccag gctattttgc tcaagtgttg caagtgtatg gaagaaaagg
    22381 ggaaacctgt aatgactgcg gaaagccgat tgaaactaaa gtaatcgggc aacgtaatac
    22441 ctatttttgc ccgaagtgtc agagattgcc gaagtaatct aataataaac tctctccccc
    22501 tgagggagag agacagcttg ttgaaacgtt aagtgaaaca agcagagaga gggtaaaacc
    22561 taaacctgca accaaaaggt aacaggcccg tcattttgta ggctgacttg catatcggct
    22621 gcaaattgcc cggtttgggt atgaatctta gtggcggctt gttgatgaaa gtaggcatac
    22681 aaacgttcgg catcaaccgg gcttgctcct tttgagaaac taggacgcaa gcctttattg
    22741 gtatccgccg caagggtaaa ctgtgaaacc actaacaaac tgccacctgc ttgctgtacg
    22801 tttaagttca ttttcccctc gctatccgaa aacacccgat aattcagcac tttttccagt
    22861 agcttatctg ctttcgcttc atcatcgtct ttttccacac cgagcagcac caacaaaccg
    22921 cttgcaattt cgccaacgac ttgcccttca acctccactt ttgcgaattt aacccgctga
    22981 attaagccta tcattaatgc tccccttgtc tgtttccatt tcgtctaaaa ccgccgcaaa
    23041 ttgcccgcca agtaatacca cctgccaact taactgaatc cataacagca taatcggtaa
    23101 caccgctaat gctccataaa ttgcctgata agacgggaag gcagtaatat accaaataaa
    23161 ggctttcttc cctaaagtaa agaaaatcgc tgccattaat gccccgatag cagcgtgttg
    23221 aaattttacc tttctaattg gaataaattt atacactaag gtaaaaagta gccaaattag
    23281 caaaaacggc atcaattcta ataaatgctg cccgagcgat aacgctccat ttccattaaa
    23341 aatagaaagc gacattacat aggtgctaat cgcaatgcta gcaccggcaa gcagcgggcc
    23401 aaacagcaaa atgagaaagt aaagcaagaa agagaaccac atcggacgct gacgattatc
    23461 gtgccaaatg gtattcaatg cctcatcaat actcttaatc agcataatag taaccacaaa
    23521 taagccgata aaacttacca gccccatttg tttggcatta ctgacaaaca actcaatgta
    23581 ttccgacacc atctcgctcg cactcggggc aaagttgtca taaatgaacg cttttaactg
    23641 ctcgtttgct tcgtggaaaa tcggaaaaaa ggtaaaaatg gaaaacagca cgacaataaa
    23701 cggcactatc gccagcattg tgctataagt gagataaccg gctgaaatcg caatgttatt
    23761 ttcattgtaa cgcttggcaa agagcttaat aaatctccac agtcgattta acatcttaac
    23821 ctctcaccaa ataatcgcct tcacacaccc atttgtaggt ggttaaggct tctaatccca
    23881 tcgggcctcg tgcgtgtaat ttctgcgtgc taactgccac ttctgcccct aaaccaaact
    23941 caccaccatc ggtaaaacgg gtgctggcat taatataaac cgccgcggca tcaacctgtt
    24001 gtacaaattg acgggcaagt tgataatcgg aggttaaaat cccctctgaa tgctgcgaac
    24061 cataatggcg gatatgctct accgcttgtt gcaggtcatt caccaccacc acgttaagat
    24121 caagcgataa ccactcttgg ctcaattttg cttgatcaag cggttcaatt ccttcaattt
    24181 tttgcaaatc gttactgtga atagtaacgc caagctgttg cattttggcg accaatttcg
    24241 gcaaaaattc caccgcaatc gctttttcca ccaacagcgt ttccagcgta ttgcaagtgc
    24301 ttgggcgttg cgttttggca ttagcgatga cctctagaga tttctcctga tccgctgttt
    24361 tttccacaaa cagatgacaa accccaatcc cccccacaat caccggaatg gtcgaatttt
    24421 ctttacagaa ttgatgtaaa cctgcaccgc ctcgagggat caccatatca atgtagcgat
    24481 ctagcttcaa tagttccaat aataaggctc gatccggatc cgtcaccgct tgcactgcca
    24541 atttcggcaa gccggctttt tctaacgcat cttgcactac atcaaccaac acagcattgg
    24601 taaatttggt ctctttaccg ccacgcaaaa tcactgcatt gccggttttt aggcataatg
    24661 atgccacatc aatggtcaca ttcgggcgag cttcgtaaat ggttaaaatc accccgagcg
    24721 gcacacgctg gcgttcgatt ttcaaaccgc tgtctaacac gccaccgtcc atcacctgcc
    24781 ccaccggatc cgctaatttg gcaacatttc gcacatcgtt agcaatgtct tttagccgat
    24841 cttcattcaa taataagcgg tcaataatcg ccaatgaaat cccttgtgct tgagcaaatt
    24901 caatatcttt ggcattagcg tataaaattt cttctgcacg ttgctcaagg ctatcggcaa
    24961 tcgtgagtaa ggcttggttt ttctgtaggt tgccaaattg agccagctca aaactagctt
    25021 gtttggcttg ctgggcaagt tctatcatct gcataaatta ggtctcattt aatcaatatt
    25081 ctccataatc taacacgttc ttttatgtga agaaatatgc aaaagccaag aaaattggat
    25141 aaaatggggg aattttaaaa cattacgcaa ttcccctctc cctgattttt ctcctgaacg
    25201 gagaaaaatc tatccctctc ctacaagggg agagggtaga atttaactct ctccccttgt
    25261 gggagagaga ccgcctacag attcgttcag aatctgtagg cagagagagg ggtaaaaaca
    25321 gataaaactt aaacaaaatg ataaacacta cccctaaaca gctaatccac attcttccgc
    25381 ctcaactggc aaaccaaatt gctgccggcg aggtggtgga acgccctgcg tctgtggtaa
    25441 aggagctagt ggaaaacagt ttagatgccg gagccaatac tattcaaatc gacattgaaa
    25501 aaggcggctc tcagcttatc cgcattcgag ataacggttg tggtatcagc aagcaagatt
    25561 taccgctggc acttgctcgc cacgctacga gcaaaatcag cagcttggaa gatttagaag
    25621 ccattttaag tttaggcttt cggggcgaag cattggcaag tatcagctcg gtttcacgtt
    25681 taacactgac ctctcgtacc gcagagcaaa ccgaagcatg gcaagcctat gcacaagggc
    25741 gggaaatggc ggtggaaatt cagcctgcct cacacccgat tggcacaacc attgaagtag
    25801 caaatctgtt ttttaacaca ccggcacggc gtaaatttct acgcaccgat aaaaccgaat
    25861 ttgcccatat tgacgaggtg gttcgccgca ttgcccttgc caagccgaat atcagtttca
    25921 gcttaagcca taatggtaaa atcgtccgcc aatatcgcaa agtgcaagac aattcggtag
    25981 agcagcaaca aaaacgggtt gcagccattt gcggtgatga gtttattcaa cattcaactt
    26041 atattgacag gcaacacggg gatctgcacc tacacggctg ggttggctca ccggctcttg
    26101 cccgtctgca aaacgacctt tgctacagct atgtgaacgg gcgaatgatg cgggataaaa
    26161 ccatcaatca cgccattcgc caagcctacg gcgacagcat tgcaagtggt tactatccgg
    26221 cttttgtgat ctttttggat ttagatccga caatggttga tgtaaacgtt cacccggcta
    26281 aacacgaggt gcgctttcat caaggaagac tggtacacga ctttattttg caaggcgtac
    26341 tcaacagcct gcaacaaacc caacctacgc ttgaactgcg aaatgaagtg aacgagccgt
    26401 taccgagcta tgttcaagac actaaccgcc aagctgcggg gcaaaatatt tttgtgtcgc
    26461 aaaccgctcc acaagcggcc gaatttacgc aaaaaaatgc aagtcgatca agctatacgc
    26521 ctaaatttga acgaagcaac agtgtgagtt cgtccgctca aaaatggtat aaggaattgg
    26581 ttggtggcga tttgcaccaa acaacgccaa ctatcaaaac gcaaagcacg cttgttgagc
    26641 caaaaacaga accccaaact gaacataaaa cagaagccgt ttcgcaaaaa attacgcaaa
    26701 ttgcaccgct tgcaagccac cattcacaag ccttagcgat tgtaaaaaac caagcggtgt
    26761 taattaaaga agaggaaaat ttttacctgc ttccactggc aacattagcc gagcttaaac
    26821 tcaagctaca actggaaaaa gggcaatctc aagcgttgtt gatcccactg aatctcagtt
    26881 tagatcaaca acaaaccgaa cgctggcaac aaaccaaaga agaactaact aagcttggct
    26941 tttcgatcag cgaaaaacag tggcaagccc aaacacggct cacagtgctt tccgtaccac
    27001 aggctgtcag agaacaaaac ctgcaacagc ttttatttgc tctgttcaac caaacacaag
    27061 cggtcaattt agccgaattt tttgcaaaaa aatgcgaaaa acccaccgct tgtacgctaa
    27121 gtgacgtgat tgctctactc tcagaaattg agctttatgc caatgggaaa aaagagctgg
    27181 agggaataag gaaggaagtg gatttttcca agtttttata gtctaaaggg caataccctt
    27241 tagccaaata aatgagagtg gctgccaatt cgcagcagct ctagcttatc atcttccact
    27301 tttcgataga taagaaccaa atcaggttgg atatggcaat ccctaaagcc tttccattcg
    27361 ccggttaaag cgtgatcgca gtatttctca ggtaatggct tgtcattaat cagaaaatac
    27421 aacgcctcaa ttaatgaaga ggataaagac tcaaccgcac attttttata gtcacgttta
    27481 aaagcattac tatactcaat ctctcgcatt gagttgctcc attaaatccg caatactatt
    27541 tgctgaatgt agcttttcct cgccattctt aacagccctt aatacttctg ctgtctcaaa
    27601 attaggctga taatcaaact gaaaacgttt ttctgttgcg attttcgcta atgtcattcg
    27661 catcacatca gagacagtca agccgatacc ggctaacacc tcacttgctt gctctttaat
    27721 ttcagggctg attcttacgc ttactaatgc actatttgcc atcaaaaact ccttttgtat
    27781 atcaaatgat atacaaaata acatttaaca aaaaattgtg caataaaaaa gaaattcaaa
    27841 gaaaagaaat gaatagttaa aattagctcg ttacaagaaa tcattgagtt actcaagaaa
    27901 tcaaggtaat ataaagaagt ctgggcggaa cacgaacccg cccctagcat ctagccgctt
    27961 acaagaacag atagattagt tgaaagagcg tgaaaatttc aactgctgca cacagaaacc
    28021 caagtgcaac taaaatcaat agtagttctt tcattgtaag cctccttagt gctactaagg
    28081 atgatttagg ctcaggctac tgcgaatagc cctaacgagc ctaccagtag cacaatcagg
    28141 attgtaacaa aaaagctgtg aatttcacgg ctttttttgt atctatatac agtatattaa
    28201 tatgaataaa aaaccccttg cccttttttt aatggggccg actgcctccg ggaaaaccga
    28261 tttagctatt gctttacgcc aagaattgcc ggttgaggta atcagtgttg attctgcctt
    28321 aatttacaaa ggaatggata ttggcacggc aaagccaagc aaggaagagc ttgcccttgc
    28381 accgcatcgc ttgattgata ttttagaccc tgccgagagc tattcggcga tgaatttcca
    28441 cgctgatgcg ttgcgtgaaa tggcagatat tacctcacag ggtaaaattc cgctcttggt
    28501 gggtggcaca atgctttatt acaaggcatt gcttgaaggg ttatctcccc tgccctctgc
    28561 cgatccagcc attcgggctg aaatcgaaag ccgagcggca caacacggct gggcaacatt
    28621 gcatcaagaa ttagtgaaaa tcgacccgat tgccggtgca agaattaacc caaatgacag
    28681 ccaacggatc aaccgagcgt tagaagtttt ttacattacc ggcaaaacga tgaccgaact
    28741 cactgctcag caaggtgagg ctctacctta taatatctta caatttgcaa tcgctcctca
    28801 agatcgtgca gttctacacc aacggattga acaacgcttt cacaaaatga ttgagctagg
    28861 ctttgaagag gaggtcaagc ggttattttt acgcaaagat ttgcatatta atttgccctc
    28921 gattcgctgt gtgggctacc gccaaatgtg ggaatatttg caaggcgata tttcgctcga
    28981 tgaggcgatc tttaaaggca tttgtgccac ccgccagctg gcaaaacggc agattacttg
    29041 gctgcgtggc tggcaaggcg aactgacttg gttagatagt ttagctccga ccagttctaa
    29101 agcaaaaatg gtggaaaaga tcgatcatta tttaaagaat tgtgataata tctaaacgcc
    29161 tttggcactt atcgcattat ttggtgtctt aaaaatcaca caactataaa aaggaaaata
    29221 acaatggcaa aaggtcaatc tttacaagat ccatatttga atgcacttcg tcgtgagcgt
    29281 attcctgttt caatttattt agttaacggc attaaattac aaggtcagat cgagtcgttc
    29341 gaccaatttg tgattttatt aaaaaacact gtaagccaaa tggtgtataa acacgctatt
    29401 tcaacggttg ttcctgcccg tgcgttatcg cataacaata acaaccaagc ccaacacgct
    29461 cagcctgctg ccgaagtaac tgaacaagcg gaataataac attattactc aaccaatgtt
    29521 aaacgaatca ttgccaaact cagaagaaaa ttctgcgttt ggctttgctt tatctgaagc
    29581 aagccaaact acagaagccg cctcgcctac cgatccagaa aatcaagata aagccatttt
    29641 ggtgcatctc tatctcgggc aacataaaga tgttgaaaat ttgctggaat ttaaaacgct
    29701 ggcagaatct gccggtgtcg aagtgctggc aacgcttacc accagccgcc aaagttcgca
    29761 tatcaaatat tatgtggggc aaggcaaagc ggagggaatt gccgaagcgg tagaacgact
    29821 cggggcaaca gtagtgctgg tgaaccatca acttagcccg gctcagaccc gtaatttgca
    29881 atcgttatgc ggctgccgtg tggtggatag aaccggcttg attttggata ttttcgctca
    29941 acgggcaaga tcgcacgaag gcaaactaca agtcgagctg gcacaacttc gccatttatc
    30001 gacccgtttg gttcgccgag ttactaatca agaccaacaa aaaggcggag cagttggctt
    30061 gcgtggtcca ggtgaaacac agctcgaaac cgatcgccgt ttgattaaag tgcgaatcca
    30121 acagttactc aaccgcttgg aaaaagtcag caagcaacgc aatcaaaatc gaaaaaccag
    30181 acaaaaagcc gatattccaa cagtatcctt agtgggctat accaatgccg gcaaatctac
    30241 cctgtttaat gcgattaccc aagctggtgt ttatgctgcc gatcaacttt ttgcgaccct
    30301 tgacccgact ttacgccgga ttcaggtgca agatgtcggc acgacaattc ttgccgatac
    30361 ggtaggtttt atccgttttc taccgcacga tttagtttca gcctttaaat ctaccctgca
    30421 agaaaccacc gaagctactt tactgctcca cgtcattgac ggctcagacg aacgcaaaaa
    30481 cgaaaatatt gatgcggtaa atcaagtgtt ggacgaaatc ggagcgttag atattcctac
    30541 tttattggta ttcaataaaa ttgataaatt agaaggtgta gaaccgcata ttgaacgcaa
    30601 tgccgatggc acgccagttg ccgtgtatct ttccgcccaa gaaaatagcg gcattgagct
    30661 gttattccaa gccattcaag aaaggcttcg cagtaactta gtgtgtgaaa acttgctcct
    30721 cccggttact gccggtgcaa tttacgcaca atttaaagca gaaaactgca ttaaaaccga
    30781 gcattttaat gagttcggtg aacggattat ctctattgaa attaacgaag tgcaatggaa
    30841 caaatgggtg aaacaatttc cggatctagc cgaatatatt gagctggcaa aatgggggta
    30901 attaatctca cttctgagta agttatattt aaattatgca agcggtcaat tctttacgtt
    30961 tttttgcaaa aaagtgtaaa gaattgaccg cttgttttat ccattaaatc caatttagcc
    31021 aataaaaaaa tccctcaaat aaaccagatt tccccgttct atttgaagga ttttatttat
    31081 tcttccccaa aagtggggaa gaaaagctta atcaagcagt tactaccact gataacctac
    31141 gcttgcagca gcacctgtat caccacggct gttagagtta acactgaatt tgatacccac
    31201 tttaccatta tctgataaac gagaataacc tacagcaata gctccttgac cacggtaagc
    31261 acctacaccg gctgaaacca tcgatttacc aggttgtgtt acgtgatata aattacctgc
    31321 ggctaatgca cctgcaatac ctgcacgtaa gtctttatct acgttactga tacgattgtt
    31381 cagacgattt tctgcacctt tcaactgatt cacattaaca gcatcagtgc ctttcacacc
    31441 cggagcaacg ttcgtaatac gtgtttgcgc attcttgcta cctgcaatgt taagctcatt
    31501 tacgccatct tttgcaacag ttgaactgat agttgtacca ccaactttca ctgaatcaaa
    31561 ttcaagattg cttgaggttg ccacttcaac agttgaacct ttacgtgaaa caacgatgtt
    31621 tttgccacct gaaacggcca ctttaccatt gttattaaca cgttgagcac ctttctctga
    31681 agtttcagct acattaccat caacagtgag ataccagcct gtattctgca ttgcattata
    31741 caactggcta ccgctcacaa catctttact tgttgccgtt acatcaccat ctttaacgtt
    31801 agtgatcttc gtgcctttcg catcaatacc gcctttagtt acacttgggc cgtctttaat
    31861 ggttaaacca ttgttattta cggttgtgtc gccagttgtt acagaaccat cttccgttaa
    31921 atcaattgct ttcgctaatt gtacctctaa tgtgtctgta ccattcgctt tcacattgat
    31981 gttgcctgat gctgacttaa agttttcaga agctgtttta tccacacctt cacctttcac
    32041 tttaacttca gtattcagtt tctgacggtt cttcacatct tcattgttac cagagaagat
    32101 taaaccatca tttaaggttg caacttgttc tgtgacagtt ttaccgtctt tatctttggt
    32161 ctcataaacg atacgagtct taccgttctc acccggtaat ccatctttac catttgtacc
    32221 atcaacacct tcagcaccat ctttcactgc aatatttgca cttgcaccat ctttaccgtc
    32281 agcgcctttc ggaccggtta agccgataga gccatcttta ccgtttaata caacagaagc
    32341 gccatcttta cctgtagctc caattgaacc atcaacaccg tctttaccgt cacggcctgc
    32401 agtaattgtg ccgtcacctt taatggttac gccatcttta ccgtctttgc cagcaatacc
    32461 gatttgaccg tctttaccat ctttaccacc aatggttaag ttgtttttca agccgaaggt
    32521 cacgttatta ccttctttag taataataat gttaccgtct ttgttgttta gatcaactgt
    32581 tgctcctggt ttaacgttgc ctttgtcttt accatttgct gttaagttcc aacctgcgtt
    32641 agcaacttct tgcacttgat ataactggct accatttacc gcatctttgc tggttgcaga
    32701 aatttcaccg tcttgaacgt taatgatttt cttatcgcct gcattgatac cggctttagt
    32761 tacacttggg ccatctttga tagttaaacc atcattattt accgtagtat caccaatagt
    32821 tacagaacca tctttcgtta aatcaatgtc tttcgctaat ttaactgtta acgcaccatt
    32881 gttgtttaca acaccgatat tgttatcgga caggttcgtt aaatcagtat caccgcctga
    32941 gatttttaac gtctcattaa gtttcttaac gatttcttta ccgtcatcac ctacgaatct
    33001 taagccatcg ttcagtgttg caacttcctc agttgtaccg tctggtttct cataaacgat
    33061 acgggttttg ctttcgccat ctttaccgtc gttaccgtca aggcctttag caccgtcttt
    33121 tacagagata gttgcacttg caccatcttt accgtcagcg cctttcggac cggttaagcc
    33181 gatagagcca tctttaccgt ttaaagtaac accaactgta ccatctgcac ctttaacacc
    33241 gattgaacca tctttacctg gaccgccaat ggtaaaatcg ttatttaacg taaagtcaat
    33301 cacattatca cttactgttg tgatgatgtt tttgtcttta gaggtgtact taacagtttc
    33361 acctagttta acgtgatcag tttcaccatt atccgctgca atgctaaagc ctttctcgat
    33421 aatatcgttg cttgcattta caacatcatt aatattcgca gcgttagtac caacttcttt
    33481 taattgatcg tctgttaagt cgttcactga agtgattggc ttaccatctt taccgttaat
    33541 gccgtcttta cctgctaaac cgtcaatacc gctcttcacg ttaacaattt ggttgccgcc
    33601 attgtctaga ccgtcttcag taagcttaac tgctttacca tctgtgccat cttttggcgt
    33661 gatagttacg ccattattat ttactactgt tgttggacct ttaccttctt gaccattctc
    33721 tccatcttgt ggtttgaatg tagctgagtt caagtcttta agatctttag ctaattgaac
    33781 agataattta ccatctttgc tgtttacgcc gatgttattt gcagttagct tatctttatc
    33841 agctccacca atgatttcta aggtttcatt caatttctta gatactagtg ttgcatcatc
    33901 acctttaaag tgtaaaccat catttaaagt agctacttgc tctggttcac ctataggatc
    33961 accattgcca tctgttggct gatattggat acgagttaca ccatctttac ctggtaaacc
    34021 atctttacca acaagccctg gtttgccctc agtaccttta atggttaaac catctttacc
    34081 atttgtaccg ttcaagccga ttgaaccatc tttaccgtta agaacaactg cagaaccgtc
    34141 tttaccgttt acaccgatag taccatcaat accatctttg ccagggcgac ctacagtgat
    34201 agctccatct ttaccatcta aagcaatagc atctttaccg tctttaccag caataccaac
    34261 tttacctggt tcaccatctt taccaacagt aatattattc actaggctaa cttctaatgc
    34321 atggccacca tctttctcaa caacgtttgt tttaacattg ccatcaccaa tgatcttagc
    34381 tgtcgtacct aagttttgct taaactcctt gttgttctca tcttttagac caaacgcatc
    34441 tgttgtcacc tcagtaacag tctcagtaac agtatttttc aagtcaccga cgttaaccgc
    34501 attgttaaga acatcacctg ctgcctcagt aagtttaaca ggttgaccat ctttaccttt
    34561 taagccgcta tcaacattgg tgatttggtt accaccgttg cttaagccat cctctgttaa
    34621 ggtaacatta gatttagttg catcattagg atctttctta gcaatcgtta caccatcttt
    34681 attgataact gtagaatcac cttgtgtgcc gaatgttgca ctatctaagc ctgctagatc
    34741 ttttgctaac gccacagtaa tggtattgcc aacaacctgt gtcatgatat ttttaccagc
    34801 atcaaactta gcccaatcag tgtttgttgt agcaccttta atatccacct gcgtatttaa
    34861 tttcgcatcg tgaactttgc catcattcgc accgaatttt aagccatcgt taagtgttgc
    34921 aacttcttct ttatcaccat ttggtttttc gtaaacaata cgagttttgc tttcgccgtc
    34981 tttaccgtcg ttgccgtcaa gacctttagc acctttctca actttaattg atgctttacc
    35041 atcttttcca tcttttccat ttacgccatc aacgccgtgg aatacgatgg cttctggttt
    35101 aattgttaca ccatctttac catcagcacc tttaacacca actgaaccat ctttacctgg
    35161 tttaccacca acagagatgt tatcggataa gccaaaatcg atggtattat ttgttacggt
    35221 tgtaacaaca ttcttatcgg ttgaggtgta cttaacagtt tcacctaact tcacattgtc
    35281 ttctttagca ccacctccta agccagagtg atccgctgta atgttaaagc cagttttaac
    35341 taaagtgtca gctactgcgt aaagttgtga accgttaatc gcatctgttg aattggaagc
    35401 aattttaccc ggtgcaacaa acttaatttg gcgagcattg gttgcattac ccacactcac
    35461 ataatcacca tcaacaacat tttcatcgcc agcaaagctg ctatatttta atgtgccaac
    35521 agttgcagta tcttctttag ttgcggttgc ttcagtagag tcagaaccta gaattacaga
    35581 accctttgtc ttaacagtaa cattagaacc taatacgaaa gtatctttac ctgaaactgt
    35641 attgttataa cctaaagccg cagcacgaat acccgaaaca gtactattta caccggctgc
    35701 aattgagttt ttaccctttg cggttgagtt gtaagcaata gcagttgcat aattaccttt
    35761 tgatttggcc tcaaaaccaa ttgctgtgcc accttcatgc gtaatattgg cacgtgtacc
    35821 tactgctgtc gcattcgcct tacttacatt agcactataa cctatcgcaa cagaattatt
    35881 accacttgaa ttagccgtat caccaattgc cattgcacca tctttgctcg cgttagaatg
    35941 cgaaccaata ctgatcactt tttctgcatg agagtttgca ttccaaccaa tgctaatagc
    36001 attacttttc caggctttag aagcattacc aaaagcaatc gcaccgattc ctgttgtatt
    36061 cgaatttaca ccaaaggcga tagaaccatc acctgttgca cttgcatttg ttgaaaacgc
    36121 caaagtatca ttcgaatttg cacgagtatt cgtacccaaa gcaaatgcat tatttgctac
    36181 tttcgctgta tcaggattaa ttacctgtcc taattcagaa atatttgaat tctctaattt
    36241 aaagccaccg gaccaagcgt tagtaccaat ggcaaatgaa tggttaccat tagttttcgc
    36301 tttagtaccg attgagaatg catctgttcc aaatgctaaa gtattatttt gcccatcata
    36361 aattgaacgt ctattttcat gaccgtaact tccatccact gtctgtggag taccactacc
    36421 aatcgcaaaa gaacggtcac ctagcgctgt agccgaagca ccaatggcga agctagctgt
    36481 agcatttgcc caagatgttg aaccaattgc agtagaataa tctgcaattg cagcagattg
    36541 acgcattgca gcaaatgagt taaatccttc cgcacgtgca gaggtaccta atgctacaga
    36601 accaatactt gcagtacgag aaaaagaacc aattgcaata gacaatcccc ctccagaata
    36661 tgaataatca ccaatggcta tgcctgacgc tttcggtttt cctctacttt ttctgttatt
    36721 gtctaaagct acagcattgt gtccaattac aattgctgag gtagtattag acttatacaa
    36781 taatctagaa tccttctcct tattaacaga gttattagat tcttgaagct tagttctgtc
    36841 tgcataggat aagctacctg ggttaaagta gttatatgga ttcgtaatag aatctgtagc
    36901 caaactagtg tttgtataaa tatctatacc accattaaca actttttttg gtgctttttg
    36961 ttgtacttct attctatcaa taatcaccgc cgcttctgcc ggtgtagcag aaagcataaa
    37021 ggctgccatt ccactgataa gggttgctcc ccctagaatg ctagccgctg ctaatttaat
    37081 agtaccgcgc ttatcagtag aagaagcggc tttaccttgc gatcgagcaa gttcagacac
    37141 aacttccatt ttttgcgtcg tttggttaaa aataac
//
LOCUS       DANMGB010000004        36755 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.004, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000004 DANMGB010000000
VERSION     DANMGB010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 36755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36755
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.004"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(206..1081)
                     /gene="ubiA"
                     /locus_tag="PXG19_000143"
     CDS             complement(206..1081)
                     /gene="ubiA"
                     /locus_tag="PXG19_000143"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL6065488.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1074..1835)
                     /locus_tag="PXG19_000144"
     CDS             complement(1074..1835)
                     /locus_tag="PXG19_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL6065489.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1902..3269)
                     /gene="purB"
                     /locus_tag="PXG19_000145"
     CDS             complement(1902..3269)
                     /gene="purB"
                     /locus_tag="PXG19_000145"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL6065490.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3303..3932)
                     /gene="hflD"
                     /locus_tag="PXG19_000146"
     CDS             complement(3303..3932)
                     /gene="hflD"
                     /locus_tag="PXG19_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL6065491.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4064..5728)
                     /gene="cydC"
                     /locus_tag="PXG19_000147"
     CDS             complement(4064..5728)
                     /gene="cydC"
                     /locus_tag="PXG19_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL6065492.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5728..7494)
                     /gene="cydD"
                     /locus_tag="PXG19_000148"
     CDS             complement(5728..7494)
                     /gene="cydD"
                     /locus_tag="PXG19_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL6065493.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7609..11706)
                     /locus_tag="PXG19_000149"
     CDS             complement(7609..11706)
                     /locus_tag="PXG19_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL6065494.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11787..13622)
                     /locus_tag="PXG19_000150"
     CDS             complement(11787..13622)
                     /locus_tag="PXG19_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL6065495.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     PHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13634..14479)
                     /locus_tag="PXG19_000151"
     CDS             complement(13634..14479)
                     /locus_tag="PXG19_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL6065496.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14480..15643)
                     /locus_tag="PXG19_000152"
     CDS             complement(14480..15643)
                     /locus_tag="PXG19_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6065497.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
     gene            15811..16494
                     /locus_tag="PXG19_000153"
     CDS             15811..16494
                     /locus_tag="PXG19_000153"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL6065498.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(16631..17188)
                     /gene="frr"
                     /locus_tag="PXG19_000154"
     CDS             complement(16631..17188)
                     /gene="frr"
                     /locus_tag="PXG19_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL6065499.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(17240..17956)
                     /gene="pyrH"
                     /locus_tag="PXG19_000155"
     CDS             complement(17240..17956)
                     /gene="pyrH"
                     /locus_tag="PXG19_000155"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL6065500.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            18048..19610
                     /locus_tag="PXG19_000156"
     CDS             18048..19610
                     /locus_tag="PXG19_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6065501.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(19674..20525)
                     /gene="tsf"
                     /locus_tag="PXG19_000157"
     CDS             complement(19674..20525)
                     /gene="tsf"
                     /locus_tag="PXG19_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL6065502.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(20621..21340)
                     /gene="rpsB"
                     /locus_tag="PXG19_000158"
     CDS             complement(20621..21340)
                     /gene="rpsB"
                     /locus_tag="PXG19_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL6065503.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            21685..22713
                     /locus_tag="PXG19_000159"
     CDS             21685..22713
                     /locus_tag="PXG19_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6065504.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            22836..24482
                     /locus_tag="PXG19_000160"
     CDS             22836..24482
                     /locus_tag="PXG19_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6065505.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            24492..25502
                     /locus_tag="PXG19_000161"
     CDS             24492..25502
                     /locus_tag="PXG19_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6065506.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            25512..26138
                     /locus_tag="PXG19_000162"
     CDS             25512..26138
                     /locus_tag="PXG19_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL6065507.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(26200..27690)
                     /locus_tag="PXG19_000163"
     CDS             complement(26200..27690)
                     /locus_tag="PXG19_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL6065508.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(27749..28984)
                     /gene="rhlB"
                     /locus_tag="PXG19_000164"
     CDS             complement(27749..28984)
                     /gene="rhlB"
                     /locus_tag="PXG19_000164"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL6065509.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(29072..29794)
                     /gene="recO"
                     /locus_tag="PXG19_000165"
     CDS             complement(29072..29794)
                     /gene="recO"
                     /locus_tag="PXG19_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL6065510.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(30024..30941)
                     /gene="era"
                     /locus_tag="PXG19_000166"
     CDS             complement(30024..30941)
                     /gene="era"
                     /locus_tag="PXG19_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL6065511.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(31044..31718)
                     /gene="rnc"
                     /locus_tag="PXG19_000167"
     CDS             complement(31044..31718)
                     /gene="rnc"
                     /locus_tag="PXG19_000167"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL6065512.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(31764..32723)
                     /gene="lepB"
                     /locus_tag="PXG19_000168"
     CDS             complement(31764..32723)
                     /gene="lepB"
                     /locus_tag="PXG19_000168"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL6065513.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(32810..34603)
                     /gene="lepA"
                     /locus_tag="PXG19_000169"
     CDS             complement(32810..34603)
                     /gene="lepA"
                     /locus_tag="PXG19_000169"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL6065514.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
     gene            34876..36105
                     /locus_tag="PXG19_000170"
     CDS             34876..36105
                     /locus_tag="PXG19_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL6065515.1"
                     /translation="MQFREINPSPRLLMCPGPTDADPRVLRAMSAPILGQFDPEFTSL
                     MNETMEMERRLFQTKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNE
                     ILARSGADITIIEREWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKI
                     CKQYDAMLIVDTVATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEII
                     AKRKRVEKGIRAESDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEA
                     LRIILQEGLEARFARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPA
                     LRSDILNHFGIELATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVP
                     SGDAVAAALAVYKEADK"
     gene            36299..>36755
                     /locus_tag="PXG19_000171"
     CDS             36299..>36755
                     /locus_tag="PXG19_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6065516.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRK"
BASE COUNT        10607 a         7988 c         6824 g        11336 t
ORIGIN      
        1 tggcattgta atgtcccttt tttgaatgtc tactacaaaa tgggatattt tacaaaccga
       61 ttgactaatg aagcaagaat ataattaact acaactggat atattttgca aatttcccga
      121 taaatttcac cgcttgtaga taaaaaccgt agataaaaac catagataaa aaataggagc
      181 taaacatttt tagcccctac cgtcatcaga aataaatccc gactaaaatc gccacgaaca
      241 cacctaagcc gaaatagtgg ttatttagaa acgctttaaa gcattcgcta cgttctcttt
      301 ttttggtcag ccaacattgg tagataaaca gcgtggcact taaggctaat acgacaaaat
      361 agccgatgtg ataatctttt accacgccca ataaccccaa taaaatcaag gtgataaact
      421 gtaataacgc aataatttta ttatcgtatt gagcgaataa aattgcagtg gatttaactc
      481 caattcgtaa atcatcgtca cgatcaacca ttgcatattg ggtgtcgtag gcgactgtcc
      541 acgctagatt ggcaaaaaac agcagccagc attcaagtgg aagagtttcc gttaccgcac
      601 caaatgccat cggaatcgac caaccgaatg ccattccaag cactacttgt ggcaagtggg
      661 taaaacgctt cataaaggga taaatcaccg ccagaaaaac tgccacaaag gaaagcagaa
      721 acgcatagcg gtttagcatt aaatcgagca gaaaagcgaa caacagcaag atggcaaaaa
      781 tgacttttgc ctcagtggtg gtcactctgc cggtagctaa tgggcgttga gaggtgcgtt
      841 taacgtgtcc gtcaatttct ctatcggcat aatcattaat cacacaacct gccgcacgca
      901 taacgattac cccaagggta aaaatggcta aaatcgcaac aggcggcatt ccctctgcgg
      961 caataaataa cgcccatagt gtggggtgta ataataataa cgtgccgatg ggtttatcga
     1021 aacgcattaa ctgggcgtag gcaatccatt tttgtttaga aaaaagagtt tcgttattca
     1081 ttacaaattt tgacgataac gtccgattgg cttaaatgag tctgtaattc taacggtaaa
     1141 tcttgatctg taaacaaata atttacttct ttaacatttc ctaaacgtgc aatagctgta
     1201 cgggtaaact ttgaatgatc ggtcactaaa accacttgtc gggaacattc cattaatgca
     1261 cgctttacct gcacttcgtg gtaatcgtaa tcgagcatag agccgtccat atccaccgca
     1321 ctaatgccta aaatcccaaa gtccaaacgg aattggttaa taaagcgaac cgtttcttct
     1381 ccgattagcc cgccatcact tcttagccct ccgcctgcta ccgtaatttg gcaatcttca
     1441 ttttgcatca gaatatgagc cgcatttaaa ttattggtaa ctacttttaa atttttatgc
     1501 gaaagtaagg ctaatgccac tgcttctgaa gtcgtgccaa tatctaaaaa taatgatgct
     1561 ccatttggaa tcagttttgc cacctgttgg gcaatcgcat ttttctcgtg tgagaaaaat
     1621 tgcttgcggt gggtgtaatc actattctcc gtattggaag gagcggctgc cccaccgtga
     1681 tgacggcgaa tcagattatt ttctgccatt tcattcagat cacggcgaat ggtttgcgga
     1741 ctcacattca attcagccac taattgctcg gtactcacat agccaagctg attaaccagc
     1801 tcaatgatct ttttgtgtct gtttgcctgt ttcatatttc ctcttttgca aataatttgc
     1861 agaaaaagac cgcttgcaag cggtcttttt tcagttaaat tttacaattt atcaacaagt
     1921 tcaaccgcat agccgatata gcttgccggt gtcatctctt tcaaacgatt tttttcattt
     1981 tccggaattt ccaacttatc gataaactca cgcattgcgg tttcatcaac ccgtttgcct
     2041 cgagtcagct ctttaagttt ttcatacggt ttttcaatgc cataacgacg cataacagtt
     2101 tgaattggct ctgccaatac ttcccagttt tggttgagtt catcacgcaa gtgttgttca
     2161 ttcacttcta atttgctaat accttttaag gtggacgcat aagcaattaa cgcataacct
     2221 aaacctacac ctaaattacg caacacggtg gagtcagtta agtcacgctg ccagcgagaa
     2281 atcggcaatt tttgccccaa atgagccatt accgcatttg ccaagccaag attgccttcg
     2341 gaattttcaa aatcaatcgg gttcacttta tgtggcattg tgctagagcc gatttcaccg
     2401 gcaatagtgc gttgtttgaa gtgatttaag gcaatgtagc cccacatatc acgatcaaaa
     2461 tcaattaaaa tcgtattaaa acgagccacg caatcaaaga actccgcaat ataatcgtgc
     2521 ggttcaattt gggtggtgta tgggttccac gtcacaccta acgattccac aaattcttgg
     2581 ctgaaagtgt gccaatcaat ctccggatat gctgataaat gtgcgttata gttgcccact
     2641 gctccattga ttttagcgag aatttctaaa ttttctaact gtttatattg gcgttgtaaa
     2701 cgatatgcca catttgccat ctctttaccc attgtggtcg ggcttgccgg ctgaccgtgt
     2761 gtgcgagaaa gcaacggaat atgttggtaa catttcgcca gctctgctac agcatcaatc
     2821 acttttttcc attcaggtaa taatacttct tcacgagcgg ttttaagcat taaagcgtgc
     2881 gaagtattat tgatatcttc agaagtacaa gcaaaatgaa taaattcatt caccgcttgt
     2941 aattcaggca acgcttcaca tttctctttt aggaaatact ccaccgcttt tacatcgtgg
     3001 ttggtggtac gttcaatcgt tttaatccga ttggcatctt ctaacgaaaa atcagccaca
     3061 atttggttta ggtaatcgtt tgctttttca gaaaacactg gaacttcatt aatttgtgta
     3121 tgcgatgcca atttttgtaa ccagcgaact tccaccgtca cacggaattt taataagcca
     3181 aattcactaa aaatcggacg aaggctcgca actttgtctt gataacgtcc atcaatcggg
     3241 gataacgcag ttaaagcggt aagttccatt gttttatatt ctccaaatag gtaaatgttc
     3301 ggttagattt gacgataaaa tttctgtgct tggttaaaaa ttttcttgcg tgaaaataaa
     3361 aattgccaac ggcttccgcc gacttgctgc cacaaaatac cggctcgaat accggctagt
     3421 agcgaggctc gaattttatt ctgtatatcc gggcgaacca agtaatcttg cattcccatc
     3481 acgtgaattt tcgtacctaa cgggctgata atatcgctat aaatagcggc taaattggca
     3541 atcatttgat ctgccatcac attatcttca tacagggcta actggcgttc cacttgctgt
     3601 aaacgctggg ctaactgttg ttttgcttca gggtttttat tgagtttttg gctaagggcg
     3661 agcaggctta tccaataacg tccgacttcg gtatctaatt tgccgttacc gccgccagtt
     3721 tgagctaatg cggtttctaa gcccattttt aaatgggaaa gatcatcgcc aaatacactt
     3781 aacgttgatt ccggctgagt gattaacagg ctttctaaag cacacttaaa agcctctctg
     3841 tctgccatgc ctttatgtgc aaattgttgc actaacgtcg ccgcttggca aacgccggca
     3901 taagcaaggg taatatcgtg gtaatccgcc atctctgtaa aattcaatat gataaaacat
     3961 tagtgggaat atagcatttt ttcagcttct tttgaatggc aaaaggcatt tattctattg
     4021 aaaaataaat gccttttcat taatacgcaa tttgctgcaa aaactatcct accaatcgcc
     4081 cattatctat tcgataaacc acatcaaatt tatccagtcc gctttggcgg tgagtgatca
     4141 taattaaggt gcgatcacag cagtgagtca aaattaggtt taaaatctgc tgttcggttt
     4201 ctctgtccag tccttctgtt ggctcatcaa gtaagactaa ttcagcagaa ctcaggagca
     4261 aacgggcaag ccctaaacgg cgttgttcgc caccagaaag cggtctgccg ccctcgccta
     4321 accataaatt taagccgtct gtttcaagca aatgccctaa gcctactttt cttactgctt
     4381 cttgcatttg ttcgtctgta gcttgagcat tccccattaa taaattatct tttagggttt
     4441 ggctaaaaat atgcactcgt tggcttaagg taactaattt tgagcgtaac atcggctctg
     4501 aatattcgtc aattttacaa ttattcagcc aaatttgacc gcttgtaggg tcgtagttgc
     4561 ggtttaacag ttggaatatg gtcgattttc cgctacccgt tttacctaag attgccactt
     4621 tctgcccttt taatacctta aaggaaagat tatttagtac gttttgctcg ccgtaataag
     4681 caaagctcac gttttcacag cgtacaagcg gttgattttg gctcaaattt tgccattctg
     4741 ccttgctacc aaatgttaca ttaggctgtt gttcggtaat ttcactaatc cgctcggcgg
     4801 cggtaatcac ttgccctaaa tgcaaaaagg cgataccaat cggggaaaga atctccgccg
     4861 atgccattac acagaaaatc actaacgcaa ttaaggcttc agggtatttt gcagtgggca
     4921 cattaatcga agttgaaacc aaatagatca ccacacaagt caaaatgccg ttggataaca
     4981 ttatcaagct atttgataag ccggacagtc ggctttcttt gctttgagcg ttcagccatt
     5041 gttgttcagt ttgctgtagt ttttcgctca tttggttcaa gttgccaaag agtaaaaatt
     5101 ctgcatttaa ctgtacccac tcaataaatt ggctgcggta atttgctcgg ctttgtattg
     5161 cattacgccc taatttcaaa cccaatcgat aaaatacggt aggaataacg gcaagcaata
     5221 ccaatagtgt gccgcaaatg atcagcatta atggcacgga aacaaaagaa agcccgattg
     5281 ccataaatgc aataatcatc actgcactga caaaaggcga gactaaattc agatataggg
     5341 tgtctaacgt atccacatct gccaccaagc ggtttaacaa ttcgctgttt ctaaagcgat
     5401 ttagcccgct tggactcagt ggaatcaatt ttttaaagac gctagcacgc aaattcgcca
     5461 atacccgaaa agtcgcatcg tgggtgacta aacgttcaaa gtaacgtgaa attgtccgcc
     5521 ctactgccaa ccctctcacc cccgatgaag ggtagaaaaa gttaaaaata agcgcattgc
     5581 cggctagaaa tgaggcagct aaaaaccaac cggaaaggct gagcaaaccg atacttgccg
     5641 ctaatcctaa aattgccagc acaacaccta ataatagtcg cccaaaatgg gtttggtaga
     5701 gagcaaaaaa cgggaacaac gatttcatta gatttctccc tgatgcacta attcattatg
     5761 tattaattcc gcaaaaaagc cggtgtgttc taattcagtg aaacgacctt tctgaatgat
     5821 ttgcccttgt ttcatcaccc aaatttcatc gcattgggtt aaatcttcca ctcgatgagt
     5881 aatcattagc gttgtttgct ctcggctgag attatgcaga gcggctaaca cttgctgttc
     5941 cgaatccata tcaaggcttg cagtcggctc gtctaacagt aataattcgt acgggcgaag
     6001 caacgctcgt gcaatcgcaa tccgctgtgc ttgcccgcca gagataccga tattactgtc
     6061 ttgcacttga tgctccaacc ctaaacgtgc cacaaattca tcggcttttg aaagctgtaa
     6121 tgccttggct aattcagaat ctgtcgcatt agggttgcct attaaaatat tctctttcaa
     6181 actgccatgc attaattgcg gattttgccc cacccacgct aatttcgctc gccattggct
     6241 taaatttaaa tctcgcagtt cggtgccgtt aatcgtaacc gacccttcat aaggcaagaa
     6301 accaagtaac atattcatta atgaactttt tcctgcacca ctttgcccaa ccaaagcgat
     6361 atgttggtgt gcattcaact cgaaatttaa cgcttgggtt aaggctttgc cttgtggtga
     6421 gaagatcacg caatctttgg cttgaatcac aagcggttga ttttcaacat tttcttgcaa
     6481 attgccacct tgcgttttca ccttttcttt taagaaagtt tcgatattat ctgcggcact
     6541 aatcgctgct gccttgtcgt gataaaacac gccaagttca cgcatcggtt ggtaaaactc
     6601 aggtgccacc attagacaaa agaagccgat aaataaggtc acgcccgtac cataatagcc
     6661 aaaatccagc tcacctaaaa aaataaagcc aaaatagacc gccgtcaccg caatcgatac
     6721 cgccgtgaaa aactccaata ccgcagagga taaaaacgcc atttttagta cgtccatcgt
     6781 actgattcgg aaatcttcgg tgctttggta gatttgttca gtctgctttt ccgcttgccc
     6841 aaataagcga atggtttcta aaccttttaa tttatctaag aactgtccgc taatacggga
     6901 aagaatgccg atattacgct gatttgcctc cactgctttc attccggcta aaatcataaa
     6961 taaaggtaat aatggcattg ttgcaaataa aatagcccct gctgcccagt taatcgggaa
     7021 tacaaaacag aggatcagta atggcactat cagcgataaa aattgctgtg gcaaatagcg
     7081 tgcgtagaaa ttatgtagat tttccacctg ctcgagcatt aaggttgccc agctgcccgc
     7141 cggtttttgt tgaatgctca tcggcccgac tgcttccatt ttggctagaa tttggcggcg
     7201 aagatgtaaa cgcaaggttt gccctgcttt gaaaccgaca cgctcacgca gaaaaatgaa
     7261 gaatgctctg gcagcaaaac aacagaataa gagcataatt tcaaccagaa agctattcgg
     7321 tgactgcttt ccgataagca ttttgtctaa cattgtggca atcagccaca tctgtccaat
     7381 catacataaa ctactgaaac tccctaacag tatgtttaag tgcatatatt ttttgatgac
     7441 tttttgctga cttttaagcc atttttgtaa ttcgcgttgg cgttgttttt ccataatttt
     7501 gtcaattttt ttgttttttc aaccgcttgt aaatcgggtt tgccattcta ctataaagca
     7561 aaaaggttgt taatggcgaa acattaacaa cctttcattc agccttaact agaatagctc
     7621 gtcaaattca aagcgataca ttaaatctac cgcttggtta atacttgaga cccattgtaa
     7681 gtacaatctt ggcgttaaat tatagcgtaa ggttaattcg gtaagcggtg caaaaatgcc
     7741 cacgccatac ttcactctga atttaggggc aaggctggca cttacttcta ctttggtgtt
     7801 atcgccaata cctgcggtgg tcacgcttaa atctttgagt ccgaaagtgc taccaacatc
     7861 acccaccaat ttactgcttt ttgataagct catactgagt aatgccgctg cgactgcatt
     7921 actggagctg gtatcgccac tgctttccaa tgaacgacca gttaaaatat aggaaagtgc
     7981 ttcattttgc gacattgccg gatcagagaa tacttttacc gttggattgt ctgccaaacc
     8041 ggtcactctt accccagctg taatggtcgg atcttccatt gcctccggat tgcgtatagc
     8101 ttcaatatct aaggttggct gagacggtga gccggcaaaa ctaatatcac ctttacgaat
     8161 cagcaagtct tgaccataag cggcaaatcg tccttcacgc aaatgaactt gcccgtaaag
     8221 ccctaaacct tgtttgcctt gcctgacaga caataagcca ttcacgttac tgtttaaacc
     8281 ataggctttg agtttgacat cattaccgat gttaatctta atatctgcat taattgccat
     8341 tccacctgag gtttgagccg gaatattacg ttggctaaac ggcactttat ttttcacaga
     8401 gccgtccata atcacctcat ctccacttac actgaccgca ctttcaggta actgctcgac
     8461 ttcaattctt gcccaaggga tatctacatt tccacttaag gttaaaagag ttggcgttgc
     8521 cgtcacttga atatccgggc taactgccac ttttgcgata ttaggaatat ccacttggaa
     8581 acggttagct tgagcgtgaa cccgtgtttt ccacgcattt agatctcgcc agtctgcatc
     8641 accctccaaa cgcagttcgc tttgtttggt ttgtaattta ccgcttaaag tcgatgttgc
     8701 cccgtggaaa ttcattgcta aattcccacc tgtaatatca aacggcattg taacagagcg
     8761 agcttttaac tctgtaacgt ttagatttcc gtgcaataac ggagaggttg cggtgccgct
     8821 cacggtaaga cgagcattca cattgccatc aaccgaatcg ccccgttcaa gtagcggtcg
     8881 aatcagcttt aagcttaatt ggtcaagatg aatattgccg gataacgcac gagccttact
     8941 taaatctttc atcactaaat cagtcgaaag tctgccgtta ttttcgaccc ttaaatcaga
     9001 tttaagggtt aaattattgt cagacatttt cagatcaatt ttaagcggtg aaacggtgag
     9061 tgggaaactt tttcccccct ccattttttg aataaattta atcgcattag aggttaaatc
     9121 cagattcact tgaggctgtt tgtttttaaa ccaagctgca tcgcctttgg cattcacaat
     9181 ccctgaaagc tggctgtttt tctccaaaaa ttgttgcaat accgctaaat caaagttacg
     9241 gatttcaaaa ggcactttac cctcaacacc ggcattaaat gcagtcggga aacaaagatt
     9301 aattttccgg ttatgccaac aatgtgcgga aatattggcg ttaatggctt tattgtcata
     9361 tttcacattc actgctttat ctgcttggaa ttgaccaaac tcggtggatt gaatcgaaac
     9421 ttggcttaat tgcccttccc aaatttcttt caaacggtca aattttccag aaatttgcaa
     9481 atcagcacca accggattgc cttttgcact taatttcaag ctatgatttt cttcatttcc
     9541 ttttagcaat aaagtggcat ttcccacttt gatttcatta taggcaaatt gacgtaaccc
     9601 caaggttaaa tccccttgaa tggttttctc agtggtaatt ttgccttttg cggttaaatt
     9661 ttgcagttta aattgctcat agcctacatt tgaggccact aaatctaaat caatgttagg
     9721 ttctgaaacc ttacccgata atttggcatt accattcacg ctggctttta aattcggcac
     9781 taacccttgc aaattagggg ctttaatatc cgcatagaaa tcagattttt cgcctaacac
     9841 gccttttaaa tcgatcttat tttcaccata caccagcgat aagcccggaa catctaaaag
     9901 ttgttgatga tcggctttta aattaccgct taagtgtaga tttttctgta ataacgaacc
     9961 tttaatatca atattcgaga cgtccgcttt ccatccgcta gctgaattgc cccgtcctgc
    10021 ataaccttcg gaagataaag aaccggacaa taccgccggc cagtctgcca gtagggattt
    10081 agtgttaata tgctgaagtt tcaaatttga acgccacgca acgccctcgc tccaatccac
    10141 taaaccgtcg atcttcgccg taccttccag cgtattgaga cttaaatctt gtatattaaa
    10201 atgggttaat tcccctttgc cagttaaact agccgagctt gcaggcacgc ccattccttt
    10261 ggcactgact ttagcctcca aagcgtaatc caggagattg ccattaagcc tcatggcgat
    10321 attctctaaa ctcagcacat caccattttg ctgaggagca aacggataac gcattgactc
    10381 actcttcagc gataaatcaa agggagtttt cgcctgagcc agtgcaacat tgccctccaa
    10441 cgaggcgcta attgcaccag ccgtcttcac ttttaggctg gttttgtcat atagctcacc
    10501 ggaaagagag gcttcaattt gattgaacgg caattttact ttcgccgttt ttgcctcgtg
    10561 accacttagc gtccaactta gcggataatt atcttgtaac gataaagaac cgcttgcggt
    10621 tagatcccct tggtcgcttt tgaaatctaa actttttagg ttgatatgct gatcttttgc
    10681 ttgagcctga agctgtaaag aggcaacatt taacaatgag atcggctcaa tcaaattccc
    10741 tttttcatct ttagcttttt gagcaatcgc tacattcgca atatcaatct gttcaatatt
    10801 gagatcaaga ggcaaactaa agcgaatatt tttatccaat aacggctgtg ctaattgtgc
    10861 tttaatcgct gcccaatcca ctttattatc cacctgttcg gcctgtgcaa cagtttttct
    10921 ctgtaattgg tgaaagccct ctacgacttt ttcactggtt ttttccaccg cctcttgaat
    10981 cactttatca gcaatctctt gtggatttgt cgctgataac gcctctgttt ttgcattttt
    11041 ttgtgcaaaa tcgaccgctt gttcagtatc agtttcgtct aactttaagg ctaaaagcag
    11101 atttagcccc tctaactgtg tcgggtgaac ggtaatagcc cgccctttac cagaaagtgc
    11161 agtgtggaaa tgattaagat gaatatccat atcatcaact ttgaccttga tattctctaa
    11221 attgatattt tgagctgaaa tccccaatgg caaatttaat tcggtgaaag gttcggtctc
    11281 ttcttttggc tgagaagggg gtaatttagt cgtatcaatc aacacctctg tatctttaag
    11341 gctgagatta ttcaaacaca tttcatagtg gagcaagcag ctaaaaccaa tatgcagatc
    11401 tgcttgccca accgttacat tcacaccgtc catcacaaat cgggcatcag aaagctgtaa
    11461 cccatcttgc aggctacctt gcacttgccc aagttgtaat ggctctacga atttatctac
    11521 ccagcttaac actttacgtt gcccgtaacc tgtgcataga aagagaatgg cgagtaaaag
    11581 tagaataaac gtcagacaaa agccgtgctt caaaaaccgc cactttgatt ttttaggctg
    11641 tgttgcttgt ggctcttgtg ctgagtccgt ttgatttgtg gctgtttgtt tattttcgtc
    11701 agtcataatc gtgcatattt atgaggtgat aaaaagtaaa caagcggtat gcgaaatttt
    11761 actgaaattc gaccgcttgt tttcatttac agatcggaac ctaaaccaat ataaatttgt
    11821 attcctttgg aattatctgg tgattttacc ggcgtggcga catcaaattt aatcgccccg
    11881 ataggtgatg cccaacgcac ccctaagccc gtaccgtagt agagatcctg agttttgaat
    11941 ttattcgatg ccaagcctgc atcataaaaa attgcacccc accaattagg gtaaacctga
    12001 tactgatatt ctactgtgcc tgtggctaaa tgagagcctc cgacacgttt gccattactc
    12061 ggatcacggg gggaaatatc cttatagcca aagccccgca cactcatatc gccaccggca
    12121 aaatagcgta acgccggtgg aatacgttca aattgattgg ctttcaaata ccccaactcc
    12181 gcccttaaat agaaccgatg gttatcaaag taagttctcg cccaagatgt cgaggcttta
    12241 taactataaa agtttacatc tgaacctact gcacgactcc cccagtttac cgttaatttt
    12301 tgtgtatccc cccataatgg gtaaggcttg ccatctgttc tggttcgatt caatgatgcc
    12361 gttgggtaaa ctaataaggt tttaaatcga tcattagctt gagtaaaaga atcgtaacgg
    12421 gcttttaaac caacagaaaa tgaccaaccg gtttcgtgag tccagaaacg ttgtaagcca
    12481 agggtggcag cggttgattt tgtatcgttt tgatcttcgt tttctaaagt gccggataat
    12541 tggtaataat aatgtagcgg atcttctcta agtggaatat tataaccaaa ttcaaatgtc
    12601 tgctccggct tagaaacgta cgttcggctt tcaatactat gacctcggct atttaaccaa
    12661 ggtttcttcc agttaagctg taaccttggg ccaacttcag tttcgtagcc tatcccaatt
    12721 tccacttcat tgcgtttttt aggctgaaat aacacattta aatccactaa tttatcctgt
    12781 tcatttaaat gtggctcaac catcactgat gaaaaccaat tactggaaag gtaatcttgg
    12841 gttaaaatcg aaagatcgtt agctaaatat ggctcaccgg aatgaatttt aagaatattt
    12901 tgcaaatatt cttctttgat ttggctatca acaaaccgga tttgtccata atggtatcgt
    12961 tttccgctat catagcctaa acgccaatcc gctttatgat cggtcggata aacttccaaa
    13021 cggtgataaa gccaatgacc gtcaaaatac cctttactaa aagcggtact ttcaatatca
    13081 cctttaaaat tatcataggt tttatggttt aaacgactac cttgttttgg ggctttactg
    13141 actagatgag cgaaatcttc gtccgttttt gcatcgcctt gcaaaacaat atcggtttca
    13201 tcaattttta ccgtctcttt atctagctca acatttaata ctaagagcgg tttctttccc
    13261 tcttgaggta gctgcacaaa ttggtatcgg ctattataat agcccaaggc tctcagagct
    13321 ttatctactg tggtttgcac caaatattga taacgctctg aaccatctgc atattcattg
    13381 gcaatttgat ctaaatatag ctccacattt ttcttggcat ctttaccctg aatgcctttg
    13441 acttctaaag tgactaatgg ctctatttct ggctcatcat cactatcttc cgctaatttt
    13501 tcttgcagat tttcaactcg ctcacgatct acgtcagaca gcctttgctc ttgatttgct
    13561 tgtgccattg aagcaaaagc cactaaacag cagaatgtta aaaaatgtag ttttgtattc
    13621 attagtaacc tttttattct tttggaatgc cacgcaaaag cggaatactg tcataaggcg
    13681 gaacagaact taacgctggc tcttgctcaa agagcataat gaatggtttg tcaggcactg
    13741 ttttttcatt acgccacaag tttccaacac tcaccaattc aatatcttga ggtagttgtg
    13801 ctaaattttg cttcagtaca ctaatcgtat tcttgcgagg gtgtcctatc accaccgcta
    13861 ccccgttttt tcgtgcgtga ttaattgcat gtgcaaactg tttttgtaca tcagcaagca
    13921 gatcgctatc atctaaaaaa atgtctctct ccagcgtatt aataccaaat tgacgagccg
    13981 ttttagccgc cacactactg ccaatagttt tactgtctaa aaagaaaagc gtattttctt
    14041 ttaacacttt caacaaatgt tgcattgtag cagagtctga agttgctcca ctgcccatat
    14101 ggttatttaa accaatagca tatggtactt gaccacgaga agtatgaata agtttccgaa
    14161 ttttctcttc gttatcacca atatgaatac ccccctcttc aattggctgt ttcgatttag
    14221 gttccattgg caaatgaatc aaaatatccc gtttttggtt ataagcgtcc tttgcccgtt
    14281 ctgttgcata gggtgcaaca ggaataatcg ccacgcttac cgccttgggt aaggctaaga
    14341 tttctcgatc ttcttttatt cgatagccca catcatcaat tacaatcgcc atttgagctg
    14401 cttgtacaag cggtgtaaaa agcacaaaca tttgcaaaaa aatgttaaaa ttcaaccgct
    14461 tgttaatttg tttaaacatc tatttcacca aatttagagg attaatcggc gtgcctttac
    14521 gggtaacacc aaaatagagt gcagaacggc tttgtccccc actgttacca accttcgcaa
    14581 taacctgtcc gccttgcact cggctaccct tgctgactga aatagattgg ttatagccat
    14641 aaagggaaat atcaccattg ccgtggtcaa tcgcaaccat attgccatac cctgcaagcc
    14701 attgagccat tatgactcgc ccgctcgcca ttgctctaac cgaagtaccg gcagaagcac
    14761 caatcactac accgtgccaa ttattaccaa aaggagtgat aatattgcca gacaccggca
    14821 tcgtatatcg accagccttg atcggtgttc tctcaacatt ctcagttgtt ttggactgac
    14881 cggattttgc ctgtttttcc cgctgttgtt cacgtttttc tgcttgctga gcctctcttt
    14941 gcgcttgttc taattgttgt tttagtgcct gttcattgct gcgtaaattc tctaatcggc
    15001 tttgatcctg ctcaagcgtt ttatcgatta aacgtaaggt actttcacgc tggctttgta
    15061 ctttctttaa atctttctct tgtttctttt gttcattaag ttgcgtttga tgatcttttt
    15121 gctggccttt caattcatca cgtctggctt taagatcagc ttgggtttta cgaatttcaa
    15181 cgatcgcatc aatgcgaata ttattcatat gctgataata agcggtcatt ctttccgcat
    15241 tttttgcctc ttcagacatt aaacgctcta agaccgaagg gttcacccca gaacggtagg
    15301 cagagtccaa ctgctctttt aatttttctt tctgctgttt ttccaacttt tctaaacggg
    15361 caatttcagt ctcagtcgct ttaatggtct ggcgaacttc cgttaaagac atttcggttt
    15421 tttgtaattt atccaacacc ttccccattt ctacttcttg gttttttagg gtagattgca
    15481 acgcattacg tttttgcttt tgttcattaa tttttgaggt ttgctgttgg attttttgct
    15541 gaatctgatt aagattattt gcaaaagaaa aaggggtaga aaagcttatt accccactga
    15601 aaatagcagt ccaacagtaa gaatttattc gtttcaccag catacctttg tttcttcaaa
    15661 atattattaa ggttatattc taatcggtta tttgcttaag atcagctttt tagtgaaaga
    15721 atttaactat ctatttcaaa atataaagaa ttttgctata aatagcacaa tttcaaatcc
    15781 attaatttta ctcaaagcta aggagtcatt atgcaattag tatttatccg tcacggtttc
    15841 agtgaatgga atgctaaaaa cttatttacc ggttggcgtg atgttaattt aacagaacgt
    15901 gggattgaag aagcaaaatc tgccggtcaa aaattaaaag cagccggttt tgaatttgat
    15961 attgcgttta cttcggtttt aacccgtgcg atcaaaactt gtaacatcgt attagaagaa
    16021 tcagaccaat tatggatccc tcaagtgaaa aactggcgtt taaacgagcg tcactacggt
    16081 gcattacaag gtttagacaa aaaagaaact gctgaaaaat atggtgatga acaggttcac
    16141 atctggcgtc gttcttatga catctctcca ccggatttag acccacagga tccaaactca
    16201 gcacataacg accgccgtta tgctaactta ccaaaagatt taattccaaa tgcagaaaac
    16261 ctcaaaatca cccttgagcg tgtgttacca ttctgggaag atcatattgc acctgcatta
    16321 atttcaggta aacgcgtatt agttactgct cacggtaact cattacgtgc attagcaaaa
    16381 cacatcgaag gcatttctga tgcagacatt atggacttag aaatcccaac cggtcagcca
    16441 ttagtgtatg aactagatga caacttaaaa gtaatcagca aacgttactt ataattggta
    16501 aatttccgat aaaaaataac cgcttgtagt gcaacacatt acaagcggtt attttttgtt
    16561 aattttttgc aaatggcaaa gaacaaaaat aaaggcgaat catacattcg ccttattgtt
    16621 ttaaagtaga ttagaaatct aacaactctt tctcttttgc tgctaatact tcatcaactt
    16681 ttttaatgaa ggtatcggtg attttttgaa tatcttcttc agctttgtgt tgttcgtttt
    16741 cgctgatttc tttatctttt aataacgctt tgatttggtc attagcatca cgacgaacat
    16801 tacgaattgc cactttgcct tgctcacctt ctgctttaac gattttgatt aaatcacgac
    16861 gacgttcttc cgttaatggt ggaagcggaa cacgaatggt tgtgccggca gaagatgggt
    16921 ttaaacctaa atctgaggtt aaaattgctt tttctaccgc agagattaaa gatttatcaa
    16981 atacgtttac cgctaaagta cgggcatctt cagctaccac gttcgctact tgacgtaatg
    17041 gagtcgcaga gccgtaatat tccacttgaa taccgtctaa taaagaaggt tgggcacgac
    17101 ctgtacgaat tttcgcaata tgccctttta aagcctcaag gcttttttcc atacgatctt
    17161 gggtatcttt cttgatttcg ttaatcattg attttttatc cttttattta gtaactgaga
    17221 gttaaacaga gaaaattaat tattcagaaa tggttgtacc ttcttcagta ccgaatacca
    17281 cattgcgtaa cgcccccggt ttgcccatat taaagacacg aattggcatt ccgtggtcac
    17341 gagcaagcgt gaatgctgct aagtccatta cttgtaattc ttgctcaata acttgcgcat
    17401 acgttaattt attatatagt tttgcatctg cgtattttgc tgggtcttta tcataaacgc
    17461 catcaacttt agttgctttt aataccacat cagcttcaat ttcaatacca cgcaagcaag
    17521 cagctgaatc ggtggtaaag aacgggctac ctgtaccggc agagaaaatc accacacgtt
    17581 tttcacgcaa cattttaatt gcttcagacc agttgtaagt gtcgcaaatc ccatttaatt
    17641 ggaacgcaga cattaattta gcatttacct ctgcacggtg taaggcatca cgcatagcca
    17701 aaccgttcat tacggtggca agcataccca tatggtcgcc cactacacgg ttcattcctg
    17761 ctttggctaa ttttgcacca cggaataagt taccgccgcc aagtaccaca ccaacctcaa
    17821 cgccttcagc aagtaattct ttaatctcta acgccatacg atccaaaata gacgggtcga
    17881 taccaaaacc ttcactgcct tgtagggctt caccacttaa tttgagaaga attcgcttat
    17941 aaataggttt gctcatttta attgcctctt aactgtatgg actaaacaca aaattacgtt
    18001 attatagaac aatccaatat aacgataaac taaaaatatt cactacaatg aaatccaaac
    18061 aacttttcgg cattcttgtc gctatttcgc tggcaactgc tgctagctgt ttaatgctaa
    18121 tcggatcagg cttttttcca aatccgagta tctttgaagt cattttgggc gtattcctca
    18181 tcatcgctct tgccagctct aaatggactt attatttact cttactgcca atcagcatcg
    18241 cttatgcaat ttataccccg gttgggataa aattcggtaa accgacttac gagtatatcg
    18301 cctctatttt tgctaccgat atgatggaaa gcaaagagtt tattgctcaa ctgccgattt
    18361 taaatattgc ggcgggcatt gcgattgtac tagcggtcat tttttatcga aaaattacca
    18421 atcgctatca aatccgtttt ttacgcaata aaacattcgt gatttcggct tttgtattaa
    18481 tgctgttttc ccttgcaccg tttaaatttt ttcaggagtt ctacaattcg agcctaaagg
    18541 taaagaaaga attggaagtg ctgaacaatt taacgctaga ttcacaatgg ggacaatcaa
    18601 ccctcagctc aacttcaaac tacgatgatt atgtactgat tatgggcgaa agtgcgagaa
    18661 aggattatca ccacgcctat ggctatccgg ctgccaatac gccttttatg agttcggcaa
    18721 aaggaacctt gattgacggt ttaacctccg gtggcacaaa cactatcgcc tcattacgct
    18781 taatgctcac taagcccgat acggaaaaat gggaagcaaa ttatgggtta accttaattg
    18841 atttaatcaa atctaccggt atcaagacct attggatctc aaatcaaggc tatttgggca
    18901 attacgatac gccgatttcc tctatcggta ataaaagtga tgtcaaaatt ttcactaaag
    18961 ccggcgattc attaaatacc aatgtgagcg attttgaatt gttaccgcat tttgctaaag
    19021 tgattgaaga acctgctcaa gggaagcgtt tcatctttct gcatttatat ggctcgcatc
    19081 ctattacctg cgatcgtctc accgattacc cgaaaatgtt tgacgatgac aaactgccaa
    19141 aacgctactt taatgtaaat tgctacgtgt catctatcaa gaaaaccgat gaattgctga
    19201 aacgggtata tgatttgcta gtgaaaaacc aagaaaatca ccagcgttca ttctcaatgg
    19261 tttatttgtc tgatcacggt ttatcgcacg aggtttcaaa agagaacatt gttatccaca
    19321 atggaaagga tagaagtaaa ttacactacg atattccgct gtttaaaatt tcaagcgatg
    19381 atacccaacg taatgagtat aaagccttta aatccggctt aaacttcact aatggtattg
    19441 cgaattggat tggtatcgaa aatccgttat tagataaaga aattaatctt tttaacgaac
    19501 aaaacgataa aagtgattat gggctaaaga aaatcattga aacgcagtct actgtagaag
    19561 atccagctgt tcctattcct gaaagctact tatataaagc gactaattag caaaagtaag
    19621 taacaaaaaa gcaggcttta agcctgcttt tttagttttt agtatcagaa aaattaagcg
    19681 ttaccgccag tgattttcgc tacttctgct gcgaaatctt cttctacttt ctcaatacct
    19741 tcacctactt ctaaacgaat aaagttagaa actgaagtat ttactgattt taaatattga
    19801 cctacagatt gagatggatc cattacaaac ggctgaccgg ttaatgaaac ttcaccggtg
    19861 aatttagcca tacggccttc aaccattttt tctgcgattt cttttggttt accagaattc
    19921 atcgcaattt caatttgaat ttcacgttct tttgctacta catcagcaga aacatcttct
    19981 gggtttacaa attcaggttt gcttgcagca acgtgcattg ctactttctt aagctcatct
    20041 tcagagcctg cacctgctac taatacacca attttcgcac cgtgtaagta ttgagcaata
    20101 acttcgcctt ctaagtattg aacacggcga atgttcatat tctcaccgat tttcgcaact
    20161 aatgccgcac gtttttcttc aaattgtgct tgtaatgctt cgatagttgt acctttattt
    20221 gcaactgcaa aatcagcaac ttcgttcgct aattctaaga aaccggcatc ttttgcaacg
    20281 aagtcagttt cacagttcat ttcaactaat acgccaaaac ctgaagcgac acgagcaagg
    20341 attacacctt cagctgcaac acgacctgct tttttagccg ctttcgcttg accggattta
    20401 cgcatattat cgattgctaa ttcaatatca ccgttcgctt caactaatgc ttttttacat
    20461 tccatcatac ctgcgccggt acgttcacga agttctttaa ctaatgatgc tgtgatttca
    20521 gccattttaa attcccctta tttgatatgg taaaacaggc tctcacctgc ctagaaattt
    20581 cattgtttag ggcaggttaa aacctgcccc ctcaactgaa ttattccgca gaagcttctt
    20641 ctgctacttc aacagtttca acaccgcgac cttctttgat tgcagcaact gctgaatcta
    20701 agtaaagttg gatagcacgt gttgcatcat cgttaccggg aatgatgtag ttaacgccat
    20761 ctggagttga gttagtatca acaatcgcaa ataccggaat acctaagttg tttgcttctt
    20821 taattgcgat atgttcgtga tcagcaccga taacaaaaat tgcatccggt aaaccgttca
    20881 tatctttgat accgcctaag cttaactcta atttttctaa ctcacgagta cgcattaacg
    20941 cttctttttt agtgattttg tcaaaagtac cgtcttgagt ttgagtttct aaatctttta
    21001 agcgtttgat tgattgacga actgttttcc agttagtcaa cataccacct aaccaacggt
    21061 ggtttacgta gaattgttgg ctctctactg ccgctgcttt aacagcatca cttgctgcac
    21121 gttttgtacc aacaaataat actttaccat tgttactagc aatgcgagtt aattccgcta
    21181 atgcttcgtt gaataaaggt aaagtttttt ctaagttgat tacgtgaaca ccattacgag
    21241 caccaaagat gaatggtttc atttttgggt tccagtaacg tgtttggtga ccatagtgaa
    21301 cgcctgcgtt aagcatatcg cgcatagaaa cttgtgccat aagaattttc cttcaaagtt
    21361 gtttgttttg ccacttatga acggcaaaac ggggtttagc ctccacatat cctagaaaat
    21421 caatctgtta aagacacccc aattcctagc ttgtgatatg tgtgtgtttt agtgttaaaa
    21481 aataaatgtg tacgttttgc ctgaatagac aaaaacgggg cgtattatgc caaaaaacaa
    21541 acaatttgcc aattatttta ttgctctctt cgcattacta aatcaagctc aaaaataaaa
    21601 accgttctca ttattgacta aaaaaatggg gaggtttaga atgtctttca ttctgttatg
    21661 aaaacctgtc tgaaggagac tatcatgaaa aaaacacttt ctgcacttgc tattgctgca
    21721 gccactttta catcaacttc aacgcttgct gcaaatgaag tgaatgttta ttcttaccgc
    21781 cagccttact taattgagcc aatgctaaaa aactttgaaa aagatactgg cattaaagta
    21841 aacatcatct tcgctgataa agggttggtt gatcgtgtaa aacaagaagg tgaattaagt
    21901 cctgctgatg tgcttttaac agtagatatt tcacgcgtaa tggaaattgt taacgctgat
    21961 cttgcacaaa aaattgactc taaagtgtta gaaaaaaata ttcctgcaca attccgtgac
    22021 tctaacgacc aatggtttgg tttaaccaca cgtgctcgtg ttatctacac gtcaaaagat
    22081 cgtgtaggta aattaccagc aggctttgac tacctagatt tagctaaacc agagtataaa
    22141 ggtaaagtct gcgtgcgttc aggcaaaaac tcttacaatg tctcactatt cgcggcgatg
    22201 atcgaacatt acggcattga aaaaaccaaa gcattcttag aaggcttaaa agcgaactta
    22261 gcacgaaaac cacaaggtgg tgaccgtgat caagtaaaag caattaaaga aggcatctgt
    22321 gattactcta tcggtaacag ctactactac ggcaaaatgt tagatgatga gaaacaaaaa
    22381 tcgtgggctg aagcagcgat tattaatttc ccgagtggtg aacacggcac gcacaaaaac
    22441 atcagcggcg tagttattgc aaaacactca ccaaataaag caaacgcggt gaaattaatt
    22501 gaatacctaa gtggcgaaaa agcacaaggt ttatatgctg aacttaacca cgaatatcca
    22561 gtaaaagaag gcatcgagcc atcagcaatc gtaaaaggtt ggggtacgtt caaatcagat
    22621 accatcaaac ttgaagatat cgcaaaaaat tacgaagccg cattaaaatt agttgatgaa
    22681 gtgaaatttg acgatttctc tgagaaaaaa taatcaaccg ataagcggtc atttttccac
    22741 aaaaatttgc aaaattttgt taaaatacaa ccgcttgcaa aaggacgcat tttgcgtcct
    22801 tttatttttt tatgaaataa caggcttaaa gaaaaatgcg atcacaattt tgctggaaaa
    22861 gtattgctgc cctaacaact tttatcgttt tgcttcctct tattgcaatt tgctatcacg
    22921 cattgcaagg ggataatgaa aaccttgctc acctttggca aacaatgttg ccaatctatc
    22981 ttaaaaactc aactttatta gtattaggaa ccgttttcct tgcactgatt tttgctctgc
    23041 ctaccgcttg gattgtggca aattaccgtt tttgggggca aagaacctta caatggttac
    23101 tttgtttgcc tctcgctatg cctgcttatt taattgccta tttatatacc gatttattag
    23161 attactcagg tgcttttcaa ggctggctgc gtagtatttt tggctggact catccgcaag
    23221 attactggtt tcctcaaatt cgtacattgt atggtgcttg ctttgtgctt gcgttagtac
    23281 tatatccata cattttttta ttagtgcgag ttgccttatt agaacaatct gaaaacttaa
    23341 cacacagtgc aaaaatgctc ggggcttcgc cctctcagtt gttccgtcga attacgctgc
    23401 cattaattcg accttctgtt gccgtaggca ttgcattagt ggcaatggaa acgcttggcg
    23461 atttcggtac tgtggcctat tttgccgtgc caacacttac tacggcaatt tatgattcgt
    23521 ggctaggcta tcacgatctt ggtactgcca gccagattgc gatctttatg ttgctaatga
    23581 ttttcctgtt tttaagttta gagcaatata gtcgccgtaa acaaaaaagc tatcaacgtg
    23641 gctatgaaaa gaaatcagcc tttaaatttt taactggttg gaaattagca ttagcccttg
    23701 cttggtgctg gggtttattg gcgttagcct ttttcattcc gtttggcagg ttgctctatt
    23761 gggcatacga ctatttcgag caagcgtgga atttagactt tgtccaattt tcgcttaata
    23821 gtttgaaagt atcgatcatc gcctccgtga taacggtact gattgctcta cttctgcatt
    23881 tttctaaacg tttgaatacc cgcaaaattt tagtcaaaaa tgaccgcttg tcattacaac
    23941 ttgcctcact gggctatgcg gttcctggca cagtattagc gatcggttta ctttcgcctt
    24001 taacatttgc cgatcatcaa ctccatgctt ggctaaaaag ccttgaatta tcacccgttg
    24061 gattgatttt ttcaggctca ctctttgcat tagtattagc ttataccatc cgatttttag
    24121 caatggcaat tggcagcctt gaaacttcgc taaataaaat ctctccatcg ctggatatgg
    24181 cgagccaaac gcttggtaaa aatggctcag caatgttagt aaaaattcat atccctttaa
    24241 tttataaagg tattttaact gcaggattaa tggtctttat tgagagtatg aaagagctaa
    24301 atgcttctct gctacttcgc ccatttaatt ttgatacact cgcaacctat gtgtttacct
    24361 ttacatcaga cgagcagctt gagcgtgctg ctctgcctgc catcgtattg gtgttagtcg
    24421 gtttactgcc tgttatttgg cttaccagat cccttatttc gcaatctgaa aaagaaagat
    24481 aaaggaattt tatgtctgtt ttaactatta atcatctcaa cctcaatttc ggcagtacaa
    24541 aggttttaca aaatctccat cttgctgtga atcaaaatga aattatctgt ttgctaggtg
    24601 caagtggctg tgggaaaact acactgctca aagccattgc aggtttattg ccaattgagc
    24661 agggagatat tcatttagcg ggtgaatgcc taaaaagtaa agccgtggaa gagcgacaaa
    24721 tcgggctgat tttccaagat tacgctcttt ttccacactt gacggtagcc gataatattc
    24781 aatttggctt atccaaattg ccaaaagtac aacaaaaagc aattaccgaa aaaatgcttt
    24841 cagttgtgca tttacaaggc tttgaaagcc gttttccaca cgaactttcg ggcgggcaac
    24901 aacagcgtgt cgctattgcc cgagcattag cctgccagcc agaattgcta ctgttagatg
    24961 agccgttttc caatattgac agccaaactc gctatgcaat gattcaagag atcaagcaaa
    25021 tcttaaaaag ccaaaatgtg cccgctattt ttgtaaccca tagcaaagaa gaagcctttg
    25081 catttgccga taaaattgcc gtgatggatc aagggaaaat tattcaattt ggtaagccaa
    25141 acgagctata ccattctcca gttaatccat ttgtggcaga ttttttaggt ggcacaaact
    25201 atcttaactg taatgtaacg gaagacaacg tgttatgcag ccctattggc gagttccgac
    25261 tcttccctga aatgaacgtt cagaaagggc gttaccgttg gcttcttcgc ccagaacaga
    25321 ttatcttaaa acccaatgag ctaggtttag gtaaagtggt aggcaaactg tttttaggcc
    25381 tatactaccg ctatcaggtt gaaattaaag gcattgagat agtaacttac caatctcaag
    25441 agctgaaaat tggcgaacaa gtggaagtgg gcttccaagt aagagagttt atcctatttt
    25501 aaggagaata tatgaaaatt gaagtttggt cagattatgc ctgcccgttt tgttacatcg
    25561 gcaaacgcca cttagagcaa gccctagccc aatttgaagg cgaggttgaa gtggttttcc
    25621 gagcctttga gcttgatccg cacgctaacg gcgaaccgga gggcgatatt cagcaacgcc
    25681 taatgcggaa atatcaaaaa accgcagaac aagctgatga aatgattcgt tatgtggaac
    25741 aagccggcaa acaagctggg ctagatttgc gttaccgcac cacccaatac actcgcacct
    25801 ttgaagctca tcgcttggcg aaatttgcag aaagtaaaga cttaggcgaa gcaatggttg
    25861 aacgtttatt caaagcctat tttaccgata acactattct agctaaacgc acagagctta
    25921 tcagtttagc cttagacatt ggcttagagc gtgatgaaat cgctcaactg ctcacaggtg
    25981 atgatttcgg gcacgaagtc cgtgaagatg agcgagtcgc tcacaaatat ggcattcaca
    26041 gcgtaccgtt ttttgtgatc aatgaaaaac tcggggtatc cggggctcaa ccgccagaaa
    26101 tattacttga cgctatcaaa caggcattgc aaaaataatc cgaaaaaaga ccgcttgtta
    26161 agctaaacaa gcagtcttat tcttcttata atttacaatt tattttttgg tgatcgcacc
    26221 taaaatacca cgcataattt gtttggtgac ttggttgcgt aaatttctgc caactgaatg
    26281 cgccacttgg ctaaccactt gttcggtaat cgattgatct tttttcttct tcgagccaaa
    26341 aatggaagag agaataccgc caaagaagtc attgtttgct tcttctgccg cagcctgctc
    26401 tgctttaatt gcttctgctt tcgcattaag taattcaaac gcagattcat tatcgacata
    26461 ttggctgtag tgatgataga gatcatcttg cttcactaaa ctatcacgtt cgcctgtggc
    26521 taatggagct aattggcttt ttggtggata gatataggca atttctacag gcgttggcat
    26581 acctttttca tctagcaccg aaaccaacgc ttgccccaca ccaagttgcg tgatggcttc
    26641 taccacattt acctctttat tcgctcggaa agtttccgct gctgatttta ccgctttttg
    26701 atcacgtggc gtgaaagcac gcaaagcgtg ttggatacga ttgccaagct gccctaatac
    26761 tgaatcaggt atgtccaacg gattttgcgt aacaaaataa acacccaccc cttttgagcg
    26821 aattaaacga accacctgtt caattttatc caccaatgcc ttaggggcat cgtcaaacaa
    26881 taaatgagct tcatcaaaga ataaaacaaa cgtcggtttt tctgggtcgc caacttctgg
    26941 caaattctca aagagctctg ccataaacca aagcaggaat gcactgtaca ctcttggtga
    27001 gttaattaat ttttctgcat tcaacatatt gattacacca cgcccattac gggtttggat
    27061 ccaatcgtgc aaatctaatg caggctcacc aaataaatta tctgcccctt cattttcaag
    27121 ccttaataac gcacgctgaa tagctccaac gcttgctgca gaaatatgcc catattccag
    27181 ttggaattct ttcgcattat ctgcgacaaa tttaagcaac gcacgcaaat cttttaaatc
    27241 aattagcaat aaacctctgt catctgccac acgaaaaacg agatttaaca agcctccttg
    27301 ggtatcgttt aaattgagta aacgagaaag taacatcggt cccatttcgg aaatagtgat
    27361 tcgaagtggg atacctgatg taccaaatac gtcccaaaac gaaactggat agccctttaa
    27421 gtaatcttct ccccctaaat taaactgtaa aatgcgttct gcaatttttc ctgaaaaatt
    27481 acccgcttgt accgagcccg aaagatcacc ttttacatct actaaaaata ctggcacgcc
    27541 atcatcactc aaagattctg ccaatttgcg taaagtaacc gttttacctg tacccgtagc
    27601 cccagcaatt aaaccgtgcc gatttgccat tttggcatta agcgaaataa ctttgcctgt
    27661 ttctgttcga gcaatttgat acaaactcat ctttcattct cttaaaggta aattaatttt
    27721 ttgttctcat catataaaaa tttatcactt aattacggct attctttttc gtttttgcca
    27781 agaacgtttt tttacttctt gagcggttca ctttcggtaa agtcagtaag gattccttgt
    27841 cgtattgact cacaggaatc tgatgcccaa tatactcttc aattgcaggc aaattaaccg
    27901 cataacgctc gcaagcaaaa ctaattgaat ggccgctctc ccctgctcgc cccgttctac
    27961 caatacgatg aacgtaatct tctttatcat caggcagatc ataattgaaa acgtgcgtga
    28021 catctggaat atgcaatcca cgagccgcaa catctgttac cactaaaata tccaaattgc
    28081 ctttggtgaa attatccagc aaagaaaggc gttttttctg cggaatatcg ccggttagca
    28141 ttccaacccg atgtccgtct gccgataaat actgccagat ctcttcgcat ttatgcttgg
    28201 tgttggcaaa aatcatacaa cgctccggcc actcttcctc aagcaatgtc agcaacaatg
    28261 ccattttgtc ttcattcgag gggtaaaata gctcttcttt aatacgatgt ccggtttttt
    28321 gtagtggctc aatttcaata tattccgcat tatccatatc ttcataggca agttcccgca
    28381 cttttgccga aagcgttgcc gaaaagagca aagttaaacg ttctgaaggc ttaggtgctt
    28441 ttcgcattaa ataacggata tctttaataa aaccaagatc aaacattcga tctgcttcat
    28501 ctagcacaat cacttgaatt ttgtctaaat tgataatgcc ttgttttaca tagtcaatca
    28561 ctcgacctgt tgtaccgaca agaatatcta cccctttttc aatttcttga acttgtttgt
    28621 cgtaaccatc accaccgtat gccaaagcta gttttaaatc agaatgtttt aaaaacagct
    28681 cggcatctgc cccaatttga accgccaatt cacgggttgg agcaagaatt aatgctctcg
    28741 gctgattttt tgacgtttcg atttcgttat tcaataaatg gttaaaagtt gcaatcaaaa
    28801 aggcaagcgt tttccctgta cctgtttgag cttgccctgc aatatctttg cctttcagcg
    28861 taatcggaaa ggtttttgcc tgaatcggcg tacaaaattc aaagcctttg ctatcaaggg
    28921 catttagtac attagcgtga atcgggaagt caataaagcg gtgttcggta agatgattag
    28981 acatagtatt tccttgataa ttgtgatgtg acaagcggtc ttttttacac atttttttgc
    29041 aaaatagcat attgggcgtt ttttctcaaa tttaaccgct tttgagttta ttcggcaaaa
    29101 tagattggaa aagctctcgg cttttcagcg gttgtgaccc taaatagggc tttagtgcca
    29161 ttcgggtaaa acgtttcgct gcttgttgag tacttttttc tgaaaaatcc aactgagcaa
    29221 acgctaataa atcactgcct aaaaagctct ggttattctg taataatgag gcgataaagc
    29281 cctgattttc ctgaaattga taggtcattt tcggatcaac tggcaaaccg gttgccgcac
    29341 agtgcgtaaa atccacccca taacccaatg cttttaacgt atgaaattca aaggtgcgta
    29401 aaatcggctc aatctgtttt tgtgtggcaa gctcggtaat gcaacgtaaa taatgctgaa
    29461 ataattcagg gtaagcggtc tgattttcca atactcttgc aagtacctcg ttgatataaa
    29521 acccactata aagtgaaagc gtttccatcg gcaacgttaa tgcagccggt tctgctttgg
    29581 ttaaagtttt cagatcccct ttacccgacc aacgcaacaa caacggcgtg aacggctgta
    29641 aaaccgcttt caacggcgag cgagcccgcc ttgcaccttt agcaagtaaa gtaatccgcc
    29701 cgtgatgttc ggtaaaaaac tccactaata aactgttttc gctgtattca cgccgatgaa
    29761 ggacaaaggc tcgttgccat tggtctattg tcataatttc ttgttaatta tgaggttgta
    29821 atttacttct gccaaatctc cccctcccct ctttgctaaa gaggggagat cttgcagagt
    29881 atattttaaa gtcattttca ctatttaacc ttttatatag ataggaagat gaatttaaaa
    29941 tttctggaga actagtcccc ctctttagaa aagaggggtt aggggagatt tgattacgat
    30001 attaatgcta taacgggagc caactactcg tccatatacc ctaaacttct caatgctctt
    30061 tcatcatccg cccaaccagc ttttactttc acccaaagct caaggtgcac ttggttgtca
    30121 aataggcgtt ccatatcttt tcgagcttca atgccgatgg ttttgatttt ttgccccccc
    30181 gcaccaataa ccattttttt ctgaccatct cgttctacta aaatcaagcc attgatttca
    30241 tacaccccac gctcattcat tttaaattgt tcgatttcta ccgttaccga ataaggtaac
    30301 tcttcacctg taaaacgcat tagtttttca cgaataattt ctgatgccat aaagcgttga
    30361 gagcggtctg tcacatactc ttcaggaaag tggtgctcac cttgacgcag tgattgacgg
    30421 acaaatttct gtaaaatatg cacattttta ccccgttgtg ccgaaattgg cagaatttca
    30481 gcaaaatcaa atttttgtga aagctcggta atatgcggca gaagttcttc tttttccttg
    30541 atgttatcaa ttttattgat tgccaataaa acaggggctt ttgccgaacg caatttgttt
    30601 aacaccattt catcatcttc tgtccatttt gtgccttcca caacaaagat gatgagatct
    30661 acatcgccaa tagcagaact tgctgcacgg ttcattaaac gattaatcgc acgtttttct
    30721 tctatgtgta agcctggggt atctacataa atcgcttggt attgatcttc agtgtgaata
    30781 ccaacaatac gatggcgagt cgtttgagct ttgcgtgagg taatggaaat tttttgtcct
    30841 aaaatcttat ttaataatgt tgatttccct acatttgggc gaccaacaat cgcaataaaa
    30901 ccacaatagg tttttgcagg agtttgaatt tgttctgtca ttttgttttc ctttcattct
    30961 gtggaatgaa tttgatggtg caagcgtcca cgcttgtacc atttaattaa atctttagca
    31021 caagcgagga cgcttgcgct atcttacttt ttcgttttaa ccaccgctaa cgctttttct
    31081 gcggcatttt gttcggcttt tcggcggctg gtgccaatgc cgataaacac ttcctcgacg
    31141 ttaatcactt tacaggttac acggaaagtt tggttatgag cttcgccttt aatatctaat
    31201 acatcatatt caggcaatgg caattttcta ccttgtaaaa actcttgcag gcgggttttt
    31261 ggatcttttt gtgaatcgcc tggactgata tctttaagca aatctgaata ccaatcttcc
    31321 accttttcca ttgcttttgc catatcttga tcgagataaa tggccgcaat aatcgcttca
    31381 acacagtccg ataaaatcga ttctcggcga aaaccaccac tttttagctc tcctggacct
    31441 aattttaggt agtcgcctaa atcaaatttg cgagcaataa tcgctagagt ttgctcacgc
    31501 acaagagttg ctctcatacg gctaagctca ccttcattcg cttttggaaa tttgtcgtat
    31561 aatactttac caatagtaaa atttaaaatt gaatcgccta gaaattcaag acgctcattg
    31621 tttttggttg ccgcactgcg gtgtgttaag gcctgaatga ggtaatcaag gttatgaaat
    31681 tgataaccta attttttctg taatcgttct agttgcatag tttatgtgaa taaaggggcg
    31741 tatctcatac gcccctgtta agattaattg attgaggtaa acattctaga aaaacgaagc
    31801 cccgttggga attcatttgc ttttttatct aaacttaacc aaataaaagt ggctttacca
    31861 acgatgtttc tctcaggcac aaagccccag aaacgactgt cttcactgtt atcacggtta
    31921 tcacccatca caaaatagta tccttgtggc acaacccatt caccttctgc ttgcccttct
    31981 tgttggtaga aataaggtgc atagttaaat gccattgggt gatttaaaat ttgatgagtt
    32041 acattacctt tttcagtgcg ttctacctgc atttcaccgt gatagaaaaa ctcaggattt
    32101 ggcttgcctt cgctgtattc aaataccttt gtttcgccat tggctttagt aaccgttaat
    32161 tgctgagttg caaaatcata tttaatttta tcaccaccta ctgccaccac acgcttaata
    32221 taatcaacgt gtggttgtgc cggtgctttg aatacaatca catcgcctcg ttctggtttg
    32281 cccgtttcaa tcaaggtgtt ttgccagata ggatctttaa tgccgtagct gaatttattt
    32341 acgactaaaa aatcgcctac acgcaaggtt ggctccattg aaccacttgg aatttgaaac
    32401 ggttcaaata agaacgagcg aagtactgta acaaagaata aaatgccgaa aagtgaggca
    32461 aaaaattcgc ctactgcgga tttaggttga atttccgcta tttcttcagc ggttaattct
    32521 ctgcctaaac gtttttgttg tagaacaatc gcctgtttac gtcttgggtc agcactgaat
    32581 ttgtaaaacg cccaaaatcc accacaaata ataaccaagg caactaaaat aatggaaata
    32641 gtatttggca gttgcattga atcaagccat tgccaaatac cataaataat acctagaaaa
    32701 ataattggca taaattgtgc cactgaatgc tcctttttat tcaaaattgc aaagttttct
    32761 caaaatatga ccgcttgcaa gcggtcgtat tttacacgaa tattgacaat taatccttac
    32821 ccacatgaag aattgccaaa aatgcttctt gtggcacttc tacgttaccg agagatttca
    32881 ttcgtttttt accctctttt tgtttttgta gcagtttctt cttacgactt acatcaccac
    32941 cgtaacattt tgctaatacg tttttacgca actgttttac cgttgagcga gcaatgacgt
    33001 ggttaccaat tgccgcttga atagcgatgt caaattgttg gcgtggaata agttcacgca
    33061 ttttttccac taattcacgt ccacgatacg ccgcatttgc acggtgaacg ataatcgcca
    33121 acgcatcaac acgctcgccg ttaatcataa tatccacacg caccatatca gccgtttgga
    33181 aacgtttaaa accgtaatcg agtgaagcat aaccacgaga ggttgatttt aagcggtcga
    33241 agaagtctaa cactacttcg cccattggga tttcgtaagt taaggcgatt tggttaccgt
    33301 gatagaccat attggtctgt acgccacgtt tttccacaca aagggtaatc acgttgccta
    33361 ggaattcttg tggcacaagc atattacatt ctgcaatcgg ctcacgaatt tctgcaatat
    33421 tgttgattgc tgggagtttc gatgggctat ccacatagat cgtttcgcca ctggtttgca
    33481 ccacttcgta aactacggtc ggagcggtag taatcaaatc aagatcgtat tcacgctcta
    33541 aacgctcttg aatgatctcc atatgcaaca agcctaagaa gccacaccgg aagccaaagc
    33601 ccaacgcact tgaagtttct ggctcataga acaatgacgc atcatttagg cttaatttgc
    33661 ctaaagcatc acggaaggct tcgtagtcgt ctgaactaat cggaaataac cctgcataaa
    33721 cctgtggttt tactttctta aagcccggta atacttcagt tgctgggttg tggtggtggg
    33781 ttaatgtatc gcccactggt gcccctaaaa tatctttaat cgcacaaact acccaaccta
    33841 cttcacctgt ttttagctcg gtagtatcca cttgttttgg cgtgaaaata ccaaggcgat
    33901 ctacattgta agactgccct gtactcatca ctttaatttt atcgcctttt ttcagcacgc
    33961 catttttcac acgcactaaa gacacaacgc ctaaatagtt atcgaaccaa gagtcgataa
    34021 ttaacgcttg taatggtgct tccgcatcgc cttctggtgc aggcattttc ttcacgattt
    34081 cttctaaaac atcttcaatg cctaaacctg ttttagctga acagcgtact gcatcaatgg
    34141 catcaatgcc gacaatatct tcaatctctt ctgccacacg ctcaggctcg gctgctggta
    34201 aatcgatttt atttaaaatt ggcacaacct ctaaatctat ctcaattgcg gtataacaat
    34261 tcgccaacgt ctgtgcttcc accccctgcc ctgcatcaac cactaataaa gcaccttcac
    34321 aagcagcaag cgagcgagaa acttcatatg agaaatccac gtgccctggc gtatcaataa
    34381 agttgagctg ataaatttcg ccatctttcg ctttatagtt taaggttaca ctttgtgctt
    34441 taatagtaat tccacgctca cgctcaagat ccattgaatc taatacttga gcctccattt
    34501 cacgatctga taagccacca caagtttgaa ttaagcggtc tgataaagtc gatttgccgt
    34561 gatcgatatg agcgataatc gaaaagttac gaatattttg cattttcatc gggcagttaa
    34621 tgtcctgttt tgttatttgt ttatcaaaaa ttaatcgggg aattgtactt gaaatacaag
    34681 gttttgcaaa gaaaacaaat agcaataagc ggttattttt tcctaaaaat gtgcaaattt
    34741 cttgagaaaa atgaccgctt gcactcaccc taattgcaaa taatttctct aaaatataaa
    34801 aaacattgag caatcacaaa tttttattat agaatccata agttttttta attcattcaa
    34861 ttataggaaa taattatgca attcagagaa attaatccct cccctcgttt attaatgtgc
    34921 cctggcccaa cagatgctga cccacgtgtt ttgcgtgcaa tgtctgcacc cattttaggg
    34981 caatttgacc ctgagtttac ctcattaatg aatgaaacaa tggaaatgga acgccgttta
    35041 ttccaaacca aaaatgagca aacttatgta gtcaactcca cctctcgtgg tggcttagaa
    35101 actgttctaa ccgcagcgat ttgcccaggc gataaagtgt taattcctgc atttggtcgt
    35161 tttggttatt tattaaatga aattttagct cgtagcggtg cagatattac cattatcgaa
    35221 agagagtggg gaaccgtatt tgaaccagaa gaaattgaag cagagttgaa aaaaggcggc
    35281 tataaagcag ttgctattat tcacggcgaa acctcaacct ctatgatgca accgttagaa
    35341 gagatcggca aaatctgtaa acaatatgat gcaatgttaa ttgtagatac cgttgcaacc
    35401 ttaggcggtg tagatattcg tgtggatgaa tggggcattg atgcttgtat cggcggtaca
    35461 caaaaatgta tttccgcccc atcaggcaca gctttaatca cttataacaa acggattgaa
    35521 gagattattg caaaacgtaa acgtgtggaa aaaggcattc gtgcagagtc tgatgtagat
    35581 ggcacattac cgccaattcc aagtaactac ttagacttgg cacagctaca agattactgg
    35641 agcccacgcc gtttaaatca ccacacagaa accacttctg cacaatatgg tgtacacgaa
    35701 gcgttacgca ttattttaca agaaggctta gaagctcgtt ttgctcgcca tattttaaac
    35761 gacaaagcat tatgtgcagg tttagaagca atgggtttga aaatttttgg cgatcgcaaa
    35821 cataaagccc ccgttgtaac ggcattccac attccagaag gtatgagtgg cccagcattg
    35881 cgtagtgata ttttaaacca cttcggtatt gaattagcca cctcattcgg ccccttagat
    35941 ggaaaagtaa tccgtatcgg taatatgggt ttctcaagcc aaaaacgtaa cgtactttta
    36001 accttaggtg cgttagaagc cgtactttta agccataaag taaaagtgcc ttcaggcgat
    36061 gcggttgcag ctgccttggc agtctataaa gaggctgata aataaccacc ttcctaaatt
    36121 tacaatacaa ctcactaata attaatactg tggatattta tccacagtaa aaccacagaa
    36181 actcaaaata ttttcacaaa tttaatcttt tcctatttca tttaatcaaa ttaaatatta
    36241 tgacacggag cattttttta agaatgaaaa gtaaaagttt taatgaggaa attttgatat
    36301 gccaaacttt agtttcaccc atctgtataa aaaacacaca aaagagctcc ctactgttac
    36361 cttgcttagc gctctgatag ggcttagcca agtctcttat gccaatccac ttcctttagg
    36421 caacaccact ggcaccaata accttgctgt aggtgaaggt agttttgcgt taggcacagg
    36481 ttctcaagca atcggcaaga atgccattgc aaccggtggt aatatctccc cccaggaatt
    36541 caatgtggag ttagaaaact tccgtgattt agttaatcaa attgaagagt tacgtactca
    36601 aattgctgaa caagaaaaac aaggctctgt taatcaacaa ttacaagatg ctttaaagag
    36661 tcagattgct caatatgaca ctattttaga gcgtgtacgt gaaaaacaag cacaacaagc
    36721 aatattagcc aatagtgtta tatcaatgcg gaaag
//
LOCUS       DANMGB010000005        34338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.005, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000005 DANMGB010000000
VERSION     DANMGB010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.005"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            46..264
                     /locus_tag="PXG19_000172"
     CDS             46..264
                     /locus_tag="PXG19_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6065517.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            274..2250
                     /locus_tag="PXG19_000173"
     CDS             274..2250
                     /locus_tag="PXG19_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6065518.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVD
                     FNTVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2430..2918)
                     /locus_tag="PXG19_000174"
     CDS             complement(2430..2918)
                     /locus_tag="PXG19_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065519.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            2950..3891
                     /locus_tag="PXG19_000175"
     CDS             2950..3891
                     /locus_tag="PXG19_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6065520.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3894..4208
                     /locus_tag="PXG19_000176"
     CDS             3894..4208
                     /locus_tag="PXG19_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065521.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4220..4456
                     /locus_tag="PXG19_000177"
     CDS             4220..4456
                     /locus_tag="PXG19_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065522.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4440..4733
                     /locus_tag="PXG19_000178"
     CDS             4440..4733
                     /locus_tag="PXG19_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065523.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4855..5073
                     /locus_tag="PXG19_000179"
     CDS             4855..5073
                     /locus_tag="PXG19_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL6065524.1"
                     /translation="MNDELAAISASYAQHNRYQHYAEKAAEAERKGNYKEAQDHWEVA
                     KLSAKKTANRDWAEQRAEFCKRMHNKPF"
     gene            5083..5265
                     /locus_tag="PXG19_000180"
     CDS             5083..5265
                     /locus_tag="PXG19_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065525.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5282..5671
                     /locus_tag="PXG19_000181"
     CDS             5282..5671
                     /locus_tag="PXG19_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065526.1"
                     /translation="MAITEEQWKEIKQKLDSIIGRVKFRYKEHLLTVDVVQIKRSLKL
                     AVYVDGEIDGAWTKEGHEIRPYLEEVWYRKERPFFNAKEKKEYRGLMSKKKLNEKIVT
                     YSPMFPSPTALTRQYKKLDGLELIEVI"
     gene            5720..6007
                     /locus_tag="PXG19_000182"
     CDS             5720..6007
                     /locus_tag="PXG19_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065527.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6126..6671
                     /locus_tag="PXG19_000183"
     CDS             6126..6671
                     /locus_tag="PXG19_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL6065528.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            6658..7191
                     /locus_tag="PXG19_000184"
     CDS             6658..7191
                     /locus_tag="PXG19_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065529.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            7356..7715
                     /locus_tag="PXG19_000185"
     CDS             7356..7715
                     /locus_tag="PXG19_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6065530.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            7851..8360
                     /locus_tag="PXG19_000186"
     CDS             7851..8360
                     /locus_tag="PXG19_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL6065531.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            8363..8632
                     /locus_tag="PXG19_000187"
     CDS             8363..8632
                     /locus_tag="PXG19_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6065532.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            8626..8973
                     /locus_tag="PXG19_000188"
     CDS             8626..8973
                     /locus_tag="PXG19_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6065533.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            9000..9152
                     /locus_tag="PXG19_000189"
     CDS             9000..9152
                     /locus_tag="PXG19_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065534.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9152..9487
                     /locus_tag="PXG19_000190"
     CDS             9152..9487
                     /locus_tag="PXG19_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL6065535.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            9489..9785
                     /locus_tag="PXG19_000191"
     CDS             9489..9785
                     /locus_tag="PXG19_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065536.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            9808..10380
                     /locus_tag="PXG19_000192"
     CDS             9808..10380
                     /locus_tag="PXG19_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL6065537.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            10380..11936
                     /locus_tag="PXG19_000193"
     CDS             10380..11936
                     /locus_tag="PXG19_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL6065538.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12055..13509
                     /locus_tag="PXG19_000194"
     CDS             12055..13509
                     /locus_tag="PXG19_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL6065539.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            13502..14779
                     /locus_tag="PXG19_000195"
     CDS             13502..14779
                     /locus_tag="PXG19_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6065540.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(14981..15325)
                     /locus_tag="PXG19_000196"
     CDS             complement(14981..15325)
                     /locus_tag="PXG19_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065541.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            15389..15853
                     /locus_tag="PXG19_000197"
     CDS             15389..15853
                     /locus_tag="PXG19_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6065542.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            16088..17203
                     /locus_tag="PXG19_000198"
     CDS             16088..17203
                     /locus_tag="PXG19_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL6065543.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17234..18160
                     /locus_tag="PXG19_000199"
     CDS             17234..18160
                     /locus_tag="PXG19_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL6065544.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18229..18510
                     /locus_tag="PXG19_000200"
     CDS             18229..18510
                     /locus_tag="PXG19_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065545.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            18510..18944
                     /locus_tag="PXG19_000201"
     CDS             18510..18944
                     /locus_tag="PXG19_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6065546.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            18950..19447
                     /locus_tag="PXG19_000202"
     CDS             18950..19447
                     /locus_tag="PXG19_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL6065547.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            19532..20917
                     /locus_tag="PXG19_000203"
     CDS             19532..20917
                     /locus_tag="PXG19_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL6065548.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            20928..21443
                     /locus_tag="PXG19_000204"
     CDS             20928..21443
                     /locus_tag="PXG19_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6065549.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            21539..21853
                     /locus_tag="PXG19_000205"
     CDS             21539..21853
                     /locus_tag="PXG19_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6065550.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            21850..22002
                     /locus_tag="PXG19_000206"
     CDS             21850..22002
                     /locus_tag="PXG19_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6065551.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(21981..22283)
                     /locus_tag="PXG19_000207"
     CDS             complement(21981..22283)
                     /locus_tag="PXG19_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065552.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22331..24988
                     /locus_tag="PXG19_000208"
     CDS             22331..24988
                     /locus_tag="PXG19_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6065553.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            24998..25921
                     /locus_tag="PXG19_000209"
     CDS             24998..25921
                     /locus_tag="PXG19_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6065554.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            25905..26132
                     /locus_tag="PXG19_000210"
     CDS             25905..26132
                     /locus_tag="PXG19_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6065555.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26125..27189
                     /locus_tag="PXG19_000211"
     CDS             26125..27189
                     /locus_tag="PXG19_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065556.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27176..27712
                     /locus_tag="PXG19_000212"
     CDS             27176..27712
                     /locus_tag="PXG19_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6065557.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            27767..28129
                     /locus_tag="PXG19_000213"
     CDS             27767..28129
                     /locus_tag="PXG19_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6065558.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28139..29242
                     /locus_tag="PXG19_000214"
     CDS             28139..29242
                     /locus_tag="PXG19_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6065559.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29235..29801
                     /locus_tag="PXG19_000215"
     CDS             29235..29801
                     /locus_tag="PXG19_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6065560.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            29811..32090
                     /locus_tag="PXG19_000216"
     CDS             29811..32090
                     /locus_tag="PXG19_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL6065561.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32091..32693
                     /locus_tag="PXG19_000217"
     CDS             32091..32693
                     /locus_tag="PXG19_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065562.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            32677..32952
                     /locus_tag="PXG19_000218"
     CDS             32677..32952
                     /locus_tag="PXG19_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065563.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            32952..33239
                     /locus_tag="PXG19_000219"
     CDS             32952..33239
                     /locus_tag="PXG19_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065564.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            33249..33413
                     /locus_tag="PXG19_000220"
     CDS             33249..33413
                     /locus_tag="PXG19_000220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065565.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            33406..34110
                     /locus_tag="PXG19_000221"
     CDS             33406..34110
                     /locus_tag="PXG19_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065566.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
BASE COUNT        10832 a         6862 c         8108 g         8536 t
ORIGIN      
        1 atcatttaag tagtttctaa aactaacttt caaggatctc acaaaatggc aagaaataaa
       61 agagttcgag atatgagtaa tttcgaaatt cgtggtgagc tgatgaaaat cggtaagtcc
      121 ttatctcagt taggtattga gaatggatta gcaaaaacca cagttcgtaa tgcgttagat
      181 aagccatatc ccaaagggga gcaaattatt gcaaaagcga ttggtaaaac accgcaggaa
      241 atttggccct ctcgttacga ataaggagct tttatgaagg aatggttttt agccaaagaa
      301 atcgcaggat tatctggagt tccagaatta ccgaatagcg tttcaagatt ggcaaccaaa
      361 gaaggatggc aaaaacgaca aattcaaggt gtaagaggtg ttacttacga ataccacctc
      421 accagcctac ccattgaaac ccaacaacaa cttagactaa acgccgccct tgcggtaata
      481 ccgcaagcgg cagaactaca acccaaacga gacgaccccg cacttatcgc aaggctcaat
      541 aatgccaccg ataaaggcag ggataaagca aaaggcaagg cagaagcctg tatgcagttg
      601 caagcctttc tcgaccaagg gtttagttat acgcaggcag aagcgggagc ggcaaccgct
      661 aaaaatgtgt cgcaaggttc tttaaaaaat tggtactaca aagtgaaagg tcaccccgtc
      721 catttatggc aggcgatctt aatttccgaa agcggtagga gtaaaaagcc gcagctgaaa
      781 gccaagatta ctgaagaagc gtgggactgc tttttggcgg attacctccg ccctgaaaag
      841 ccggatttac gggcaagtta ccgccgaacc caagccatcg ccaagcaata cggctggcaa
      901 atagcaagtt tacagacttt ccaacgccga gtgttggcgg aagtgcctta cgaggtgatt
      961 ttgctcaaac gggaaggagc aaatgcggtt gccaagttag tgccggcact acaacgcacg
     1021 gtgaaagata ttctcgcagg agaatggatt aacggcgatg gctatcaaca caatgtgttt
     1081 gtgaaatggc acaccggcga gattgtccgc cctaaaacgt ggttttggca agatgttcgc
     1141 acccgcaaga ttttaggtta tcgaacatcg atttcggaga atactgacag catacgccac
     1201 gcattaatgg atgtgatttt taacgtaggc ataccgaaaa cgctcacgct ggataacacc
     1261 cgagcagcag cgaataaggc aatgaccggt ggtattgaaa accgctaccg ctttaaacat
     1321 accgagttag acccgaaagg cattatgccg attttaggga ttgatgtgca ttttacctca
     1381 attctttatg gtgaaggaca cgggcaagcc aagccgattg aacgtgcttt cgggcgaggc
     1441 ggaattggcg agaaaataga taaacgccct gaattaagtg gtttctatac gggcagaaat
     1501 gcacaagaaa cccctgataa ctataacggc ggtaaagacg gtgtggatta caacacattc
     1561 ttgaaagcca tagcagcagg gatagaagag tacaactctc aaaccgaacg ccataccgaa
     1621 atgtgccgag gagaattgag ttttaaccaa gtttgggagc gggattacca cccaagcaac
     1681 gtaagacaag ccagccctga acagttgcgg ttactgttct tacaggcaga aacggtcagc
     1741 attaaacgca acggcagttt tacgctgaaa gcagccggca aactttacgg cttaactaac
     1801 gtttactggg cagaaagcct gatagggata acggataaga aagtagtggc acggttcgac
     1861 cccgatgact tacacggcaa cgtgtatgtg tacaacctag aggggcaatt cttagccgaa
     1921 gcggtttgcc gagaggcgaa aggatttggt gataccagtg caagccgtga gcaaggtcgc
     1981 ttatatcaga aagtagtgaa aagtgccaaa gctcaagccg aagccgaagc ccttgaatta
     2041 ctggaagctc acgaactggc aagcctcgcc ccacaagtgg acgtgcctga gccgatagag
     2101 aagaaggtaa aagaggtgct ggtgaaagaa gattttatcg tggatttcaa cactgtgcgt
     2161 aaagcaacgg tggtggaaga aaccgaagag atcagtattt ttgatgaagt gttactgaaa
     2221 caagagaaac aacttcgcat agtggaataa ctagcggtca gtttttgcaa aaaatttgca
     2281 aatttttcta aaaaaacgac cgcttgaaat gagatttaaa cagggtttaa acgcctttaa
     2341 ggagtaaaaa atgacattaa cagggcaagc ttaccgagtg attttcaagg aactcaaaga
     2401 gcaacaagag agtgaatttg aacaggcttt caagaaaggg attgccaaaa ttcagcagaa
     2461 tcaaactcag gaatccattc tggtaaaccg tgatatgttt caagctgaaa agctaacact
     2521 gctttcacaa aagttggaag cggttgagca attacttcgc cttgaattaa atcagccgaa
     2581 ttttcaagca aaacttgaag actacgctga cgcattacga acaaccattt taagtaaagt
     2641 agccaaataa gagctttaga ctcttgaagg cttaacatct gagccacttt ttttactgtc
     2701 ggcattatac cgtcaagatc atcaatagaa gttaaatgat gaaaagagga atggtattca
     2761 gctaaacaaa aattgattgt actaagttta aacaaagtaa tgcaattttt catcacgatg
     2821 gcatttgctc gttttaactt aaaaccagag aaggttgcac gagcagaatc aagggctatt
     2881 tgatgaattt catcatctgt taaagaacga aagagcataa aaacctccaa acaaaaacag
     2941 gacaccatta tgacattaat cgaccaaatt aaacaacaca tcgccgaaag cggcagttct
     3001 caggggaaag ttgccaaaga agccgggatt aatgccgggg cgttatcggc ttacctgaat
     3061 gaaaattaca aaggcaataa tgaagaactt gaagcaaagc tgattgctta tttagagcgt
     3121 attgaggcga agaaaagaga gtttgtcgaa gctccgagtt ttattgaaac caaaaccgca
     3181 aaccaaattt tcggttcgtt acgatttgct caaaatactg gcgtgcttgc cattattcac
     3241 ggtgcgagtg gcgtgggtaa aacacaagcg gctagagagt atcgtaaacg ctatgcgaat
     3301 gtatggttgg ttaccgcaag cccttctcgt tcctcattaa gtgaggtgtt atatgaaatt
     3361 gctcttgaac ttggaatgaa cgatgcacca cgccgcaaag ggacattggc tcgtttaatt
     3421 gttcgcaaaa tgaaaggcac agcaggttta ttaattattg atgaagcaga ccatttacct
     3481 tacgaagcct tagaagaatt aaggctgtta caagaagaag tagtgaatga aagtgacatc
     3541 ggagctggtg ttggcttagt gctgattggc aatgacaaag tctacacccg aatgaaaggc
     3601 ggaattaacc ctgctcacga atatgggcga ctttggtcac gcagtgccaa acgcaccagt
     3661 attcagaaaa ccaaaaaaga agatacccaa gcggtagcca aagcgtgggg gttgagtgaa
     3721 aaccaagaag cactcaaggt aatgcaagcc attactgaaa ctggtggcgg attacggatt
     3781 ctgacacaca ccttacgatt agcagcgatg gtagcaaaag accgaatgat tcccttaact
     3841 gccgatttaa ttcagctcgc acgtaaagat ttactctcaa caggagatta acaatgagaa
     3901 ccccaaaacc caaacacagt tttaaccgca ccaaccaagc agcgtgccgt tttttaaaac
     3961 aaacccaaaa ggcaattatc cgcttaaaca gtcttggctt tacggtgctg aatattgatt
     4021 ttacccgtat taagccccgc attgaggtgg aaatcggcaa taacaagcac attgctcaag
     4081 gcttgattta tgagggtaaa gcctaccgct acagcttcgg taaaagcgaa gatttaggca
     4141 gatgggaagg ctactacacc atgctggaag gtatcagagt gtggtggcga caagcagcaa
     4201 ttcactagga gaaaaacaga tgaaaacctt agcactatta accgcccttt tagggcttgt
     4261 agggtgtgat ttagtccaaa gcaaacaagc taaaaattac atcggcaaca atttaactga
     4321 aatctgtata gataacgtgg tgtacctgat ttattccggt gataaaaaag gcggaattac
     4381 cccgaaagta aataaagatt tttaccctta tacctgtaca aacaaagagg aaagacaaaa
     4441 tggcaaaacc cgatgaaaca cccattacaa aagcagaatg tcaatctcag cttgcagagt
     4501 tgggggtgca atataaaaaa ctgccaatgg caattacaag acatatttgt aatgccacaa
     4561 ccaatataca cggcaaagtt ataaaggtca gtgtggtaga gagagttgga tatggcgtcc
     4621 agattaccgc acaaggtaac gagaaatctt gcttagtaac ctatgaagca atgttaggta
     4681 tggcagaagc aatgggatta tttgatgaag ttaaggagca aaataatgac taaaaaaaca
     4741 accagagtaa aaagtgcaac ccaaagtgcg atttatcaaa gccgagatga agtgcaagtg
     4801 gctataaaaa tcattggtga taaacagcgt gaattgcaac gtttagctac ggcaatgaat
     4861 gatgaattag ctgctattag tgccagttat gctcaacata accgctacca acattatgcc
     4921 gagaaagcgg ctgaagcaga acgcaaaggc aactataagg aagctcaaga ccattgggaa
     4981 gttgcaaaat tatcagcaaa aaagaccgct aaccgagact gggcggaaca acgagcggaa
     5041 ttttgtaaac gtatgcacaa taaaccgttt tagggggaag tgatgacaga aaccgtaaaa
     5101 gcacaactta acagccaatt aaatgaggca attatccagt tgatacaagc tcaaaagtat
     5161 ttaaaccaag atgatgccat tcgcagtgga gtgtatatcg gtacggtgca ggatttattg
     5221 ccaaaggtgc atttaaagtt attaacggca aatcgtaaac attgatagag atgaggtaaa
     5281 aatggctatt acagaagaac aatggaaaga aattaagcaa aagctagata gtatcatagg
     5341 gagagttaaa tttagataca aagagcattt actcacggta gatgttgtac aaattaagcg
     5401 atctttaaaa ttggctgtgt atgttgatgg ggaaattgat ggagcttgga caaaagaagg
     5461 acacgaaatt cgcccttatt tagaagaagt ttggtatcgc aaagaacgcc ctttttttaa
     5521 tgctaaggag aagaaagagt atagaggttt aatgagcaaa aaaaaactga atgaaaaaat
     5581 agtaacctac tcacctatgt ttccatcacc aactgcactg actcgtcaat ataagaaact
     5641 agatggctta gagttgattg aagtgattta aaacccattt acagcccatt taaccccgag
     5701 ttatttaaag gacaacaaaa tgaataaaaa cgaatttttt aagaaatacc acctagaggg
     5761 ttcactagct attttggatt tggatgcaaa tgacgatcaa agccaattct gttaccaagc
     5821 attgttggag tatagagaac tcccgttaga cacatttctt gcagagtact cagatgatga
     5881 ggatatgaca gagtcagagt ttattgagtt aatgcttgat gaattagagt ggattatccg
     5941 cagagctaag aatgctaaac ggtttgttaa aaaacgacaa aaaacgatga gggaggaaat
     6001 tatgtaacag ctcaacccaa ccaacgccac atcatccgtc tagctgagaa acaggtgtgg
     6061 cgtttgtttt aagtgggcaa tcaaaagcga taacgttttt aattgtttat ttatcggagt
     6121 aacaaatgac agacaaagcc aagctaatcc agcttatcca tattgccaag tcgcaactag
     6181 caatggacga tttaagctac cgtgaaatgc tgaaacggct caccaataaa accagctcga
     6241 ccaaatgcac ggtggtcgag ttgcacaaag tcttacacga actgcaaacc aaaggagcaa
     6301 aagtaaaata ttttgccaaa cgcagcaaaa aaccgaccgc ttacagcccg gcaacagggg
     6361 aaacagcggt aaaaagccaa attgctcata aaatccgagc ggtatggata acaatgggca
     6421 aacacggatt tttaaacgac ccaagcgaaa aagcattaaa tgcttatatg cgtaaggtta
     6481 tcaataataa aactagacca acaatattat taaatgtctc tgcattagag gctggagatg
     6541 caagttatat gcttgaaatc ctcaaaaaat ggcataaacg tgtgatgatt aaagccctaa
     6601 gcaaaagttg cacagttgat ccaaagataa gctacgatga attagtggag tggtacaatg
     6661 aagttatgta gatgcccgat ttgccacagt gatatacacc tagaagctct cgtagaagat
     6721 gaagccgggc gtgaactact cggcaaaatc agccaattaa cacacggtgt tgctcaaccg
     6781 atggttgctt atttaggctt atttaaaccg caaaaaagta accttaataa ctcaagagcc
     6841 ttgaaaatac tcaatgatgt attagcactc tacccttgct cattgctact ggctcaagcc
     6901 ctatctgaaa cggtagtaag catacgcaaa aaacgtcagc aagcaatgga aaacgggcag
     6961 aaaattgaac cgctaccgaa ccataactat ttaaaatcgg tgtatgaaac gcaaaaagtc
     7021 cattttgctg tggtgagaac cggcaaaacc gaacgcgaaa caatgaaagc cgaactggaa
     7081 aaaacacgca atgcgattgc ctatgtgcaa cggtttgttg atttaggacg tgaagaggtt
     7141 gttaaaaata gccctgagta tcagatttgg ttagctcata aacccaaata acacaagcca
     7201 ccaaaaggtg gctttttaac tttttgaaag tgcgataaaa cctgatttaa acaggcttta
     7261 aacgggtttt aagattgagt ttaaaaaaat atttcacaaa ataagaatgg ttttttatac
     7321 aataaccgaa acggtttttg gataggaaat agacaatgga attagtggat atttttgaag
     7381 aaaaagcccc ggaagtgtta accgatttag ccaaacatat tgaagtcgca ttagaagaaa
     7441 aatgccaatt tagccccgaa aaggcaaagc aaatcggtat tgatattgcc caacaaatgg
     7501 ctcaaaactg gggtggcgag gtaatttata ttcctcgcaa tttgttgatg gctcttaatg
     7561 agcgagatat gaaaatttac gaagagttta acggtaacaa tcaccgtgaa ttggctcgta
     7621 agtacaatgt atcaatgcag tgggtatata aaattgtgaa gaaagtccat aaggacgaag
     7681 ttgcccgcag gcagatgagt atgtttgaga tgtaaatcat tttttcccag ccctgatcat
     7741 tttcagggct ttttgtgtat taaaagaacg cagtctttaa acccgtttaa aatcaatttt
     7801 tcagcaaatt ctttaaactc cttttaaagc aattttaata ggagtgtgct atgtctcaaa
     7861 atcttacctt tcgccaaatt tttgaccgtt taatcggaca cgagggcggc tatgtcaatc
     7921 acccacaaga cccgggcgga gaaacccact ggggaattac caaacgtacc gcggttgcta
     7981 atggttatat gtatgcaatg aagaatatga cccgtgagca agcctaccaa atctacgaaa
     8041 aagccttctg gcaacgttat cgttgtgcag agcttaagcc agcagttgct tatcaatttt
     8101 tcgacgcagt ggttaatcac ggttttggta atgctagtcg tatgttacag cgtgcagtag
     8161 gcgtagcgga tgatggcatt attggcaata ttaccctgca ggcaattaat gcaaaatctg
     8221 aaagcgatct cttaatgcta tttaatgccg aacgtctgaa gttttacaca aaattacgca
     8281 acttccccac ttttggtaag ggttgggtca atcgtgtggc aggcaattta gaatacgcag
     8341 cacaagataa tgaggtttaa aaatggcaaa actatttaaa gaactactct caaccaatgg
     8401 cacattatcc accactagca ccgtgcagtt ttttggcaca ttgtgtgtat ttggtttaat
     8461 ggtttatgca gtaattaccc aacaacctta tgccgaaagc ctattaaata atgtgttgat
     8521 ttatcttttt ggggcaacta ccgctaaggg tgtagtaacc agctatcaag ccaaaattaa
     8581 agggggtatc cataaacaac aaagtacatt taaagaggag gagggatgtt aatgcaacaa
     8641 attttaggcg tgattggcgt catcgcagca atattgtctt atgctttgtt taaaagctgg
     8701 caactaaaac gtgagcgtaa aaagaatgcc atattacaag ctgaaaaaca gcaacaagcg
     8761 gttgaaattg agcaaaaaaa agcagaggta aaatatgtgt atatatcaaa gaaaaacaat
     8821 gaaaaagtta ctcgcagctc tgctagcgat attgatgaca agttgcagca acacggttac
     8881 ttccgtgaca acaacaggtt gcacggcgtt cagtctgatt tatccgaacc gtgcggatac
     8941 gctggaaacg aaacgtcaga ttcttgctca taatctgact tttgaggaaa tttgccaaaa
     9001 tgaaatacat taaaaaatta cgtaaacgct ggcaaatttg gcgtttttta aaaaatcatc
     9061 ctgaggttgc acaacgccga gatttattag cgattgccat taaacagggc gtagaaaacc
     9121 ctgtagggcg tgcaagacgg agggagccat aatggattta tttacagtct tttgggagtc
     9181 tatccgtgct aactttggtt ttatttctgc gttactcacc attgttgtta cggcattttg
     9241 gctcaagcta gatagcaaat acgccaagaa aaatgatctt ggtgaattgc tggaaattgc
     9301 caaaagccac gataaccgct taaccacctt agaaaccaag gtagaaaacc tgccaagtgc
     9361 ggtggacgtg gaaaagctga aaaccttagt cactgatgta aaaggcgata ccaaagccac
     9421 ctcaaagcag gtggatagta tcagccacca actcggcttg ttattagaag caaaattaaa
     9481 ggaatgatat gtcgttaaga gatttactca ctcaagacca acggctggtg attttacgct
     9541 cattagcgga agccggctat gatgccaatg agtcaattat tagtgattgc ctagatttat
     9601 acggtcacga tattagccgt gatttagttc gcacccattt aagttggctt gaagagcaag
     9661 gcttacttac cttagaacgt ttgcgagatg gctatatggt ggcaagcatt acccagcgtg
     9721 gcttagatgt tgctcaaggg cgtgttgtgg taagtggcgt taaacgccct cgccctaaaa
     9781 tttaaacggt atttaaggag cgtttaaatg agcgagaaaa atactcgtgg tcgagcatca
     9841 aaagtcgatt tactgccgcc gaatattaaa acccaactgg cgatgatgtt gcgtgataag
     9901 cagtactctc agtcacaaat tttagaagaa attaatgact taattcggga ttgtggcttg
     9961 cctgatgaaa tgctgttaag caaaaccgga ttaaaccgct acgcaagccg tatggaacgc
    10021 ttaggggcaa aaatccgtaa tgcccgggaa gttgccgaaa tttggactaa gcaattcggc
    10081 gaaatgccac aaaccgatat tggcaaaacc ctaatggaaa tggtcaagca aattgccttt
    10141 gaaacctcat tgaaattagg cgaacaagaa ggcggtattg agccaaaaca gcttgctttg
    10201 ctctcgtctg ctattcaacg tttagaacaa gccgaaagtt tgagttttaa acgggaacag
    10261 gcaatccgta aagaggtcgc acaacaagcc gctgaaaccg ctgaaaaagt ggtggtgcaa
    10321 gcgggtttat ccgctgaaac cgtccgtacg attaaagagc aaattttagg aattgcataa
    10381 tggcactact caataacaga ccgctgaatg aattagcccc tgaatgccgt tcgtttttag
    10441 agagcattca cgcttttaat cctaacgaac tgttattggg ctatcaaaag cggtggattg
    10501 cggacgacag ccaactcaaa attgccgaaa aaacccgccg ttgcggttta acgtgggcag
    10561 aagcagcaga taacgcctta atcgcaagca cccgcaaatc agacggtggc tctgatgtat
    10621 tttacattgg ctcaaataaa gagatggcac gtgaatatat cgatgctgtc gcaatgtggg
    10681 caaaagcctt taatcgtgtg gctggagaaa tccaagaaga gatctttgaa gacgaagata
    10741 aagacatctt aacctatgta atctacttct catcgggttt taaggtcaag gcattatcca
    10801 gtaatccgaa aaacctgcgt ggtatgcagg gcgtggtggt gattgatgag gcggcattcc
    10861 acgaatactt agcggaagtc ttgaaggcgg cgttagctct cacaatgtgg ggggcgaaag
    10921 tccgtattat ttcgacccac aacggctcgg aaaatctgtt taatgaactg attaccgata
    10981 gccgtgccgg ccgcaaacgc tactctgtgc atacgattac gattgaagat gcctgccgtg
    11041 atgggctata tcaacgtatc tgccaagtag tgacgaaaaa aacgtggtca ccggaagcag
    11101 aaaaagagtg gattgaaaac ctactcaacg acaccgccag cgaagaagac gcattggaag
    11161 aatacttctg cgtaccgaag ttcggctcag gcttatggct ctctcgtgct ttgattgaac
    11221 ggcagatgag cgaagccacg cctgttatcc gctttacggc aaaagatggt ttcagccttg
    11281 tggctgaacc gacacgctat gcggagattg ccgaatggtg tgaattagaa cttgagccga
    11341 tattggcaac ccttaaccct gatttgttgc attttatggg cgaagacttt gcacgcagcg
    11401 gcgatatgac ctctctggtg gtgcttgctc agcaacaaaa ccttgttcgt aaagtcgcct
    11461 ttattgttga gcttggcaat atgccctaca agcaacaaga gcaaatcgtg atgtttatgc
    11521 ttaaacgctt accgcatttt gccggtgggg cttttgacgc ccgaggcaat ggtggctatt
    11581 tagccgaagc tgcacgagat gaatttagca ccttgattga ctgcgtgcag ttatcggaaa
    11641 aatggtatcg ggaacacacc gcccccttta aagcggcatt ggaagacggc gagctggaag
    11701 ctattccaaa agatgcggat attttggctg atttgcgttc atttcaggtg gtgaaaggcg
    11761 taccacgcat accggataaa cgcactaaaa gtgcagatgg gaaaagcaaa cgacacggtg
    11821 ataccgcaat ttctttgctg ttggctcatt atgccagccg acaattagtg caaatgccag
    11881 ttgagccggt atcacgccgt ccacgccata gccaacaatt aacagaagga tattaacaaa
    11941 tgagatatgt accactttgt ttaatgatgt gtgcctcatt ctacctattt attaacaaca
    12001 ttgacggctg gggttgggga attcttttat cttttatttt agcgagtgca gcttatggca
    12061 aagaagaata atttaattag tgaaattgcc acccgtgcca gaagtattga ttactgggca
    12121 tttggctatt atctgccgaa ccctgacccg attttaaaac gaatggggaa agatatttcc
    12181 gtttaccgtg agttgttatc agacgggcaa gttcgctcag gcgtacgccg tcgaaaagcg
    12241 gcgattaaag gcttagagtg gcgaattacc accactaaca atgagaaagt ggacgagcag
    12301 atttatcaaa tatttaaccg cttgccgatg aataacctga ttaccgaaat gctcaatgca
    12361 gcactctatg gctaccatat cagcgaggtt atttgggcaa aagagggtga gttatttgtg
    12421 ccaacagaaa tcattggtaa aaagcctgaa tggtttatgt ttgacgacga aaacctactg
    12481 cgtttccgta ccaaagaaaa ctgggcggac ggcgaattat taccagatga taagttcttg
    12541 cttactacgc aagaagccac ccaagataat ccctacggtt taggcgattt atccctctgc
    12601 ttttgggcgg cgacctttaa aaaaggcggt ttcaaatact ggttggaatt taccgaaaaa
    12661 tacggctcac cgtggttgat tggcaaacac cctcgccaag ctcacaatac agataaagag
    12721 cgactagctg atgccctaga gggaatgatt agctcagcga ttgcggttat ccctgaagat
    12781 agttcggtcg aaatcaaaga tgcagcgggc aaatctgcca gcaccgatgc ctttgaaaag
    12841 ttcctcaatt tttgcaaggc agagatcaat atcgccctac ttgggcaaaa ccaaaccacc
    12901 gagcaagaaa gcaaccgtgc cagtgcacaa gtaggcttgg aagttatgga agatattcgc
    12961 tcggacgacc aagcgatgat tgaagccacc ttcaacacct tgttgcagtg gattgtgaaa
    13021 tataacttca atgtggaaca actgccgaag tttgaatttt acgagcaaga agccatcaac
    13081 accgaccaag ttgaacgaga cagtaaactc cacgcaatgg gcgtgcgttt ttccaaagcc
    13141 tactttgagc gtgaatatgg ctttgaggcg ggtgatattg aggtgcaagc ggtcgaaaaa
    13201 gcggaaaaat ctgcaaatac cacagaattt agcgaaggac aacgccgaac ccaagtgcca
    13261 atgcctgtgc caattttgga acagctagaa cacgagggag aagcaatggt ggacgattgg
    13321 ctacaagggg tgagagataa actcgctcaa gcagatagtc tggaggattt ccaaagtcag
    13381 ctagatagcc ttatccctga attaagcttt gccgaatatg gcgagctgtt ggcgttaggc
    13441 tcaacggtgg cagagcttgc aggcagacaa tcggtaaacg atgaaattaa ggcaaaacgc
    13501 aatgcgtaaa tttaccttta aacagcaagc ccaatatttt gagaaaaaac tcaatctccg
    13561 cacgaatagc taccttgata ttctgggcga agagcacgac tattttttcg tggtggctgg
    13621 ggcgaatcgt aatgaagtgt tgagtgagtt tcgcaaggcg gtggatgagg ctattcacaa
    13681 cggcgaaacc ttagagaact ttcgcaagcg gtttgatgag gttgtggcaa aaacaggctg
    13741 ggagtacaac ggcggacgaa attggcgaac acggattatt tacgatacca atgtttacgg
    13801 ggcgtataac cgtggacgtt tgcaacaaca tttagagctt gcggaggata tgccttattg
    13861 ggaatatcaa cacaacgaca acgcccaccc tcgcccacag cacgtggcgt gggacggctt
    13921 ggtgctgcgt tatgacgatc cgttttggaa atatcactat ccaataaaag cctacggttg
    13981 ccactgcacc gtgcaagcgt tagatgattt tgacctcaag cacgatggta aaaccgtcag
    14041 cccaccacct gaaattgagt ttgaacaaaa aacggtaggc gtgcggacag gcaattcacg
    14101 agtcgtaact gtgccgaaag gggttgatgt gggttttaca ccgcataatt ttgataatct
    14161 caaagccggg agagcagcaa atgtagataa gttgctaatg caaaaaatgg ttaccgccga
    14221 tcctatattt gcctccaaag cagtcagtga tttattggca aaagagccgg ttgcaaagtt
    14281 acataaccaa gcctttaaaa attgggtaaa tgatgttgcc aatgctaaag gaagtgcatt
    14341 atcccaagta gagaatatgc agttgttagg ggtactacct gttgcggtga ttgaacggtt
    14401 acagcagatc aatttagctc cgcaatctgc aattattgca ataacaaaag gcgatatggt
    14461 acacgctcta cgagagctaa aacaaaatac cggtattgcc gtaccgttgg aattttggga
    14521 aaagttgcct gcaaagttac aatacccaaa tgccatcttg ttggaaaaac aacaagcaga
    14581 aactacattg ctctttatct atgacgtagc tcaaaccaaa attgccgtaa aagtcaatta
    14641 tgatgcaact ttacaagata gacacggagc aaaaggacgg cagaaagtct tactgaatcg
    14701 agcggttaca ggtagtttat tccaagatac aactggattg aaaagttcaa agtatgaagt
    14761 gctattggga gaaatgtagc ggcgaaggac tcgaacctta taatgtaggt taaacctaca
    14821 acctttacca attaggaaac taccgctaca ttgtgtaaat tcactatacc cctaaattat
    14881 tttttaatca ataggagaaa caaaatggca gaaaaacaac tttcctttaa agtagccgaa
    14941 atagtgccaa tgtcagctat taacactatg cggcacttaa ttagtttggc attacaagcg
    15001 aattatgaga gagaaaaatc tcgtgcttga taatttcaat ggcttgtagt tcgggaacta
    15061 tattatctga aacaagccat tgttttgttg atgtcagaca tttagcgatg aaatccataa
    15121 ttaaaccatt agcagtagct cgttgttccg gagtaagttg taaccacgac gcctctgttt
    15181 gttggtctaa tgtataaaga aacataacgg cttctttttc tgataatggg tcaagtggta
    15241 atttttcagc ttttgtgact aaccattgac gggaaagcaa taaatcataa accagttcta
    15301 ttgcttgttc tgcatttacc atcatattct aattccttaa tatatcaggg caacattacc
    15361 caatctatat tttactgaga tttgcttaat gatcaaaatc accctcaaca acacccaagc
    15421 ggtcaaatcg ttacaacaaa ttgcaaatca gctggaacaa cctcgccgac tgtatggcat
    15481 tttaggggaa accctaaaga aaattcacac tgcacgcttt aaagcggaac aagaccccga
    15541 tggcaacaat tggaaaccgt tagccagtag cacgcttgct ttaaaacgta aacgaggtaa
    15601 gtccactaaa atcttacggc aagacggcta ccttgccgat aaaacggctt acaatgttac
    15661 aagtgataat gttgagtttg gctcgcagga agtgtatgca cggttgcatc aattcggcgg
    15721 taaagccgga cgaggcaaaa aagtgactgt accggctcgc ccgtggttag gcgtaggcga
    15781 taaagatgag cagttacttt tacgcaaagc tgagtggcat ttagggcaaa ttatcggtcg
    15841 tatgggaaaa taaccgctta aaatcaaatt taacgcataa aaacgcctct gtgcgttttt
    15901 attttttatt cgcctgatta ttcgactcaa aaaatttaaa cgctgttaaa cgcatttaaa
    15961 cggtatttaa acggtattgc cgattgtgat aaatcctctt tattaaaaca ccctcgaaaa
    16021 atctttaaac cagtttaaaa gctaatttct ctccaaatcc ttattattgc cccatcacgg
    16081 aggcaatatg acccaaattg aaatttttaa agccggtaag cgttatgacg ccaacggcac
    16141 gttaattgac attacccctg aaatgttgca acagaccgtt gctgcctata accccgaatt
    16201 tcacgaagct ccgctggtga tcggacaccc gaaatccaac aaccctgcgt gggggtgggt
    16261 aaaagccctt tcccttgagg gcgatgtact aaaagcagaa gtagatcagc tagacgctga
    16321 gttttcagaa atggtggcaa gcggcaaatt caaaaaagtc tcggctgctt tttacttacc
    16381 tgatagcccg aataacccac ataaaggcgt gttatcgcta cgccacgtgg ggtttttagg
    16441 ggcaatgcca ccggcggtta aaggcttaaa gcaggtggaa tttgcagaag atgatgattt
    16501 tgtcgtcttt tctgaatggg gggttgcaag tctatttagt cgttttcgtg attggttggt
    16561 gagtgagttc gggcttgaaa aagccgataa agctcttccc ccacacgaaa ttgattggct
    16621 gaaagaagag gcaatgcgaa gccaaattag caaacaggta cacgccgaac aggcaacacc
    16681 tgaaccgatt tttaatgaac ccgcacaacc agaaggagaa cctgaaatga gtgcagaaga
    16741 gaaggaagag cttgaacgct taaaagcgga aaacgagcag ttgaaagccg aaaaagccca
    16801 agccgaagca gagaaaatgg aagcagagct ggaagctgaa aaagctggta atgcagagtt
    16861 ttgtgaaggt ttagtcaagc aaggcaaact tgccccggtg gcaaaagcgg cgtttgtgca
    16921 ggctttaaat aacctttcag tattaaaagc cggtcgtgag ccggaattta atgagggcga
    16981 agatgtggtt tcacagttta agtctgcaat gtcgcaatca ccacagatta tccaatttgg
    17041 agaatatgcc acagcagata aagccaaccc acaagaagcg gaagcagtgg aatatgctga
    17101 aggcacagat ccagtttcga ttgaagccga ccaaaaagtg cgagcttata tgaaagccca
    17161 caatgtaggc tacgctgcgg catttaatgc gatttatcgc taatgtttaa cccacaactg
    17221 aaaaggaata ctaatgacaa ctcataactt acaaaaactg cgtgtacaag accccgtttt
    17281 aaccgagctg gcacaaggct atcacaataa cgagctggtt gccgagacct taatgccgac
    17341 tgtcgaaatc gaaaaggaag caggcaaaat cccaactttc gggcgtttag ctttccgatt
    17401 gccttctacc gtgcgtaact tgcgtggttc atctaaccgt ttagatccag aagatattgg
    17461 ggcgattgat gtggcgttag aagaacacga tgtggaatat gccattgatt atcgtgaaga
    17521 gaacgaagcc attttttctt tacgtcaatt tgccttaaat accacccaag atgtgattgc
    17581 gttaggtcgt gaaaaagcgg ttgcaaccct cgccttagat gaaagccgtt atgaaacaga
    17641 caataaagtc acgctgtccg gcaccagtca attcagccat aaagatgctg atgtgtttaa
    17701 ggtatttgat accgctattc gtgccgtgaa gcgggctatc ggtcgtaaac cgaatgtgtg
    17761 tgtgatttcc ggtgatgtgt gggcagcgtt aaaagaacat ccggcagtgg ttgaaaagct
    17821 caaatacagt caagtagcga ttgttacccc tgaggtgttt gccaaactga tcggcattga
    17881 gaccgtaaaa atcggtgaag cggtgtatga agaaagcggt cagctcaaag atatttggag
    17941 caaagatatt gtggtggcgt atgttgctcc tcgttcgacc ggaggcaaag gcacggttta
    18001 cgagccgtct tatggttaca cggttcgccg tcaaaaaggc ttatttgttg atacttataa
    18061 agagagtggc ggcaaaattg aagtggtacg cacgaccgat attcacaaac ctcatttagt
    18121 gggtgcggca gcaggctatt taattaaagc tgccgtataa gccacatacc atagggtgcg
    18181 tttactaacg caccattatc tcaaacacat tacatagagg aaaaaacgat ggctaaattt
    18241 attgttttac ataccccaat tttacacgat ggcaaacgct atgaggtggg ggcagaaatt
    18301 gaactcaccg ctgaacaagc tgagaacaat gcgatcaact taaaagcggt agaagctgtt
    18361 ccaaaaccac ctaaaaatgc ctcaaaacct gaagatgagc caaaacccga aggtgaacct
    18421 aagcctgaag atgcagtgac ggaagatgat gtgaagctgg ctgaagcaaa aattgcagaa
    18481 gcagagcaac caaaagggaa taaaaaataa tgtatgtgca gattgatgag ctactcacgg
    18541 cgtttagtcg caagattgtg gtgcagctca gtaatgatga accgacagcg accgagcctg
    18601 atttaaagat gcttgaaacg gcagttaaag tggcaaatga gcgaattgat gcagcgttac
    18661 gctctcgcta taccttgccg ctggctgatg tgcctacgct tattaatcag cacgcattaa
    18721 cccttgcccg ttattggctt tatgcccgcc gtcctgaaac caaaatgccg gacaccgtga
    18781 aggaaaccta ccaacaagcg gtgaaagagt tggaacagat tgcaacaggc aaactgcatt
    18841 taggcattgc tgaaagcagt caaattttag aagacgatgt tttagccgat aacagtgaat
    18901 atgaagttcg ggcgaacgct cgcattgata ccagtcgtta ttaaagatta tgtcagccac
    18961 acaaccgatt ttagaagata tttgccaaca cttgcggcaa gcattgcccg agtgggaggt
    19021 ggaactcttc ccgaatgacc caagcaccta tcatctctcg cacattaacg gtgcggtgtt
    19081 gattagctat ttggcaagca aatttgagaa acctcgcact acacaagcgg tgctgcaggt
    19141 tcgccacgtt cagattgctt taacggtgct gacccgtgat ttgcataatg atgtcggggc
    19201 gttggatttg ctggataaat tgcggttatt ggttgtgggg tttaagcctc aaaactgcgg
    19261 tgagtgttgg ttgattgatg aattttttaa tggctcaagc gaagaaaccg ggctttggca
    19321 atatcagttg attttgcaaa ccgaaactca gcaggtgcaa caccaagcgg tcgaaaatct
    19381 gccaaaattt gtaaccgctc atcttcgccg tcaagaccag cctggttcgc ccggacttaa
    19441 aacttaaatc gtagggtgcg tttgctaacg caccatcaac atcacctgat tttacggtgc
    19501 gttggcaaac gcaccctaca aggagaatat tatgacgttt caccacggtt ctgaaaccga
    19561 acgagtaaac ggtggctctg tgccggtatc ggtggttgat agtgccatta tcggcattgt
    19621 cggtactgcc ccaatcggcg cagttaatga attgaccgtc tgtttaacca aaaaagattt
    19681 tgccaaattc ggcacgattt taaaccaagg cttcacctta cctgatgcct ttgatatttt
    19741 agctcgttac gcagcgggta aagtgtatgt ggtgaatgtg cttgaccctt cccgccaccg
    19801 tactaccgtg accgatgaag tcctcacact ggatcgcaat acgctgaccg ctcaaacagc
    19861 gaaaaccggc attattgcgg tgacgagagt gaaagacggt gcaaacgtgc tgaatgctga
    19921 tcggtattcg gtcgatctgc aaaccggcgt ggtgaccttt gtctctgcac cgtctgcccc
    19981 gaaaattagc tatatctatg ctgacccgag caaagtgacc gaagaggaca ttaaaggcgg
    20041 ggtggatagc ttaaccggta aacgcaaagg ttttgaacta ttgcgtgatg gttttaacct
    20101 ttacggtgcg gatgccaaaa tcttaatctg tccggaattt gataaaaccg caagctgtgc
    20161 cgctgccctt gccacccttg ccgaccaact gcacgctaag gcgtatattc aactgccgaa
    20221 agggacgagc ttatcaaaag ctattcaagg acgtggcccg gcagggacga ttaacgcctc
    20281 ggcaagcaat gagaacgtac gccatttctt cccgtatgcg ttggggtcaa gcaatactct
    20341 tgaaagcctt gcgacccacg ccgccggttt gcgtatgttg attgatgtgg agaagggcta
    20401 ctggttcagc acttccaata aagagctgaa aggggtgatc gggttggaaa ttccgctgac
    20461 ggctcgggtg gacgataagc aaagcgaaac taatctgctc aatgcggtag ggattaccac
    20521 cattttcaat agttttggca caggcttccg cttatggggc aaccgttcgt ctaacttccc
    20581 gactgtgacc catatcagca actttgaagt cgcctctcgc acaggcgata ttattgatga
    20641 aagcattcgc caagccgaat tgcagtttat tgatttaccg attgatgatg cgttgctgga
    20701 tagcttcctt gaaaccatcg acactttcct gcgtacgcag aaatcgttgg taggttattc
    20761 ggtgagctta gactatgaat atgacttggt tgatgcattc agccgtgggc aagtcccgat
    20821 tgtgtatgaa tacactccta aaattccggg tgaacgtatc agcaataaat ctgtgatgac
    20881 ccgtaaatac ttggcaaact tggtgtcgca acgataaggg gaaataaatg agtattgcaa
    20941 ttaaccaaat tgtaaacgga aatgtttaca ttaacggcaa cagccaaatg gggcgagtga
    21001 atgaggtcaa aatccccgat attgagtttg aatttatcga acacaaaggc cttggaatgc
    21061 acggtgtgat taaattacct gccggcacga atgcgattga agcagaaatc acttgggaca
    21121 gtttttatcc ggaagtgcgt gcggtaatgc ttaatccgta taaatacact cagttgcaaa
    21181 tccgctctaa cctgcaagtg tttaactcgc agggcttggc agccgaagag ccgatggtca
    21241 ccattatgaa tgtgtctgcc ggtaaaatcg gcggcacagg gcataaaaac aaagaaaatg
    21301 ccgaatttgc cgacacgtta aatgtacatt caattaaaca gaccgttgcc ggtcgtgagc
    21361 tgttatttat tgatgtgctg gcgaatatct accgtgtgaa cggggtggat gtgttgcaaa
    21421 aattccgcac caatatcggt tagtaaaatc tttaaagccg tttaaaatca atttaaacac
    21481 cgtttaagta aactcctttg tgaagttaaa caacaaccac tcacaaagga gtttttttat
    21541 ggctaacgca gctcaacaag tattaaccaa tcttcgtgta caaaccactt ataaattgca
    21601 ataccctatc gctttaccag atggtagagt tattgaaacc ttagatgtac gtcgtccaaa
    21661 aggtaaagat tttcgtttgc ttgatgaaaa agggtttgac cctgaaaaag atggcgtaaa
    21721 aattctacgc ttctatattc aacagctcac cacacttgtg ccggaagata ttgatgaact
    21781 cgatgctgcc gatattaagg gcttaaataa cctattggaa gatatgctta ttgagggaaa
    21841 gtccgacaaa taagtgaact agataccgtt tatgctgatc tcgcttggtg gtttaagttt
    21901 tcaccaagcg agcttttaga attggattta gtggatattc cgaaatgggt agaacagatg
    21961 aacaggcaaa taaaagccgg ttatgggcag attttacggt agagccaaat aaagggttcg
    22021 gtggctaaag taagtaaaat ggcgacgccc caagctagat acacaccaac ccacgccaag
    22081 attgtcaaaa tcaatccata aatgagtaca aaactaacgc cctcgcttag gctttgtata
    22141 gattgaatcg catctaacca gtagaagata ctccaaccga ctaatgctac cgctaacaac
    22201 catttagcgg tgcattctgt tcttgttaca caagcctcga aaccagccca ctcagtaatt
    22261 cgattattta atttagtcag catacaccac ctccttaaac tttccctatt ttacgctaag
    22321 gatttaacca atggcaaata atttagctat cggaatggta attggtgcaa gcctatcatc
    22381 aggttttcac ggtgcttttt caggagcaaa gaaaaagcta gaacaattag aacaggctgt
    22441 cgctaaaaat cagcaaagcc attctaaatt aggttctgag cttactgcat tgcgtagtaa
    22501 acaagctact ctctatgcag aaatgagccg agccagtagt aaaggtggtg ctgggcttgc
    22561 tcttatgcaa caggaatata aaaaaattgg caaagaaatt gccaatatta gccgagagca
    22621 acgcaaatgg agtacagaat tagaaaaatc tattgctaag caaactaaat tacgcaatgc
    22681 aatggaacgt catacacaag ctaaagaaaa ccgagacgag cttaaaggga aaataattgg
    22741 aacggtagct tctgcggcaa tgggtgtcgg cgtgatgaaa acctatatgg agcaagaaga
    22801 agctgcgaat aatcttaaaa tttcaatgct gaaagcagat ggttctttcg ggaaatttga
    22861 agagattggc aagattgctg acacattagg gacagattta ccgggaacaa aaaaagattt
    22921 ctacaagctc gcaatggcat taaagaaaca aggtgtttct gatgatgtgc tgaccggagg
    22981 ggcattaaaa acttctgccg aactgaatgt cttgcttgat atggatcagg aaagtggtgg
    23041 agagttttta gcgaagttta tggaatctca ccggctcaat gaaaatgagt taccacaagc
    23101 agccgattat ctgcaacgag caatgtttgc cggcggttta agtaaagagc agatgtatga
    23161 atcgatgaaa tactatgctc caaaactgaa ctcaatgaaa cttacagggg ctgagaatac
    23221 cgaaaaagtg ctggcgattg aagcaatggc aggtcagcaa ggcttagagg gttcaacctt
    23281 tggtacgggc ttaaatatga tgttaagccg tatgaataaa ggaccggaaa tgctcaaggc
    23341 agcagccaaa ggaatgaaag ccgaagctcg agagatgatg gaggctgtcg gagtagaatt
    23401 taatttctgg gataaaaacg gctcattcaa aggcattgat ggaatgctgg ctgaaatgac
    23461 gaaatttgaa aaaatccgca aaaaattcgg tgacaaaggt gtaggtttag ttgcagaaga
    23521 gctgtttggc attgaaggtg ggcgtcttgc tgatattttg gctatgaaag gtcaaaaagg
    23581 cttagatgaa atgctgagta aaatgcgtga acaagccagc cttcaagatc gcattaacct
    23641 taaaacaaat acattaggtg ctgccctaga atctttagga ggagcgtggg aaacctttgt
    23701 gggggatatt ggctctgtct ttgccgaaga tataaaaggg ttttcaaaag gcttgcaatc
    23761 tgcggtggaa tggcttgtgc catttgtatc aaaacataaa gaggcgatta aatttgtagg
    23821 tggtttggtt gctggacttg ttattttacg aggcgtttta caagctggtt cttttgttat
    23881 tcaaacggta actatggcaa tgaacgccct caaaattgca gcaatgacca atcctattgt
    23941 cttagtcatt ggagcaatcg cagcgggtgc ttacttgatt tatagccatt gggatagcat
    24001 tgccccttgg tttgcaaatc tttggcaaaa tgtgaccgct tacttcaatc aattttggac
    24061 ttgggtaaaa ggtgtttggt cgggcgtgac ggactgggtg tcttctgtgt ggaatggtgt
    24121 agccactttt ttcgggcagt tatggactac gattactagc ttatttagtg tagcttggac
    24181 aaatatccaa acaatatggg gaggagcaac agcttggttc tctggtttat gggatgggat
    24241 taagtctgcg gcttttggta tgttcgacag tattagccaa aaagtcagct ctgttgtagc
    24301 aagcattaag agctttttag gctttggcga tgatgtggat aaaatggggg caaaaattgg
    24361 caatgtagct acccaagtca tcagcaaaga acactcagga caactcagca aaaccgcaga
    24421 tatggcagcc aatacagggt tctctagcgg tggtttcacc gggcaaggcg gtaaatatac
    24481 ccctgccggt attgtgcata agggcgaata tgtgatgacg aaagaagcga cctctcgttt
    24541 gggtgttgga atgctggata gcttaaacta tggcggtgct atgggtttca ctcaacctgt
    24601 tttgcaaccg attttaggta agcaaaaagg cttttttggc tcactttggg acgatgtgaa
    24661 attcggggca aactttgtcg gcaatctgct tggcttaaat caaggcagcc tgaaaacgcc
    24721 tgattttaac ccaaatgcga ccaatgcaag cggtcaaaat tcgtcgattt ttagcaatta
    24781 tgaaccactc aaccgaaatg cggtaacaca gcaggaaagc tcgcaagcac cgcagatagt
    24841 cgtgaacttt aacccgacaa tcaatgtaaa cggtaatgct acgcaagagg ctcaatcgca
    24901 aattatgcag cagttgcaaa tgagtgctta tgagtttgag aaattgctca atcgtgtgct
    24961 agaccaacga agccgtagag cctattagga gtgatttatg tattttatgt taggcaatat
    25021 tgcctttgag ccggtgaatt taactgaatt tagcgagcaa cataccgccg aatttgccga
    25081 acacgctgtg ctaaaaggca aacctcgttt acaagcgatg ggcgaaaagc taaatgaact
    25141 taatttttct cttcggttgc accataccat aggcggtgta gagagccgtt atcaagcctt
    25201 gcttgaagcc aaagcgaagc aagcggcatt ggcgttaatt tggggcagtc gttataaggg
    25261 agattatgta attgtcgata tttcatcgac cacattgttc accgatggca gaggcaatgc
    25321 cctcgctcgt gaaatgcaaa tcagcctgaa agagtttgtg ggcgataatg acggtggtgt
    25381 gttgggtgag gcgttaaatt ttggtggtgg ctcactgctt ggctctattt tgccaagcgg
    25441 tgcggtaact accctatctc aaatcaaaac agcagtcagc cgaggtgtgg agctttataa
    25501 cagcggcaaa cgcttagttg acgaagtgca aaataccgtg gcgattattc ggcagttgaa
    25561 aaatgacccg gcaactgcat tggcatattt acccgctgca ttagcgaatt tagacggggc
    25621 attggggcat tttggtaatt tgaccggctc atcggcgacc ttgggcggtt tgcaggagaa
    25681 actaccggca gcagtggtct ttagcgagga aatcggcgag atttatcaga gtttgcaaac
    25741 aatgcgaagc agtttgggta atgcctcggc aaatagctgg gataattggt ttacaccggc
    25801 agagagtgca ttgacagagg tcacagacag ctttgaccat ctagcaaaac cggtggcaaa
    25861 aatgaccgct tggattgtgc tgcgtaccga tgaggaggca gaaaatgaca cagttgctta
    25921 aacatatcgt caaacagggt gagcgttggg ataacttgag ctatcaatac tacggcaatg
    25981 cgtttgaata tggtcgaatt attgatgcca atccgcatat cggtttttgc gaggtgttgc
    26041 cgataggggt aacaatttat atccctgtac ttaacgttaa gccaacgaat aatgaaaata
    26101 tgccaccgtg gctaaggggg cgtgatgcgt aatgtaccga agcccgattt ttcactgttt
    26161 tatgaaaaaa ccaatatcac tgccgagatt gagccacatt tggtgcaact gacctatatc
    26221 gaccatttgg aaggtcaatc ggacgaactc actgtggaat ttgaagacat tcaaggcaaa
    26281 tggatacgcc aatggttccc gactcagggg gataagctca aagcggcgat tggctatcag
    26341 ggcgaatttc tgacggacat cggtgagttt gaaattgatg aagtggaata tagttataag
    26401 ccttccacta ttaacttaaa agctctaagc accggtatca gcaaagccaa ccgtacttta
    26461 aaaccgaaag cctatgagaa tacgactctt gctcaggtgg tggcaaaggt agcagataac
    26521 ctgaaattaa aggtagtcgg taagattaag gctatcccga ttaaacggat cacccaatat
    26581 caagagcggg acgtggagtt tttggcacgc cttgcccgag agtatcatca cagctttaaa
    26641 atcgtgggca atcagctggt ctttaccgat aaaagcgaac tggggcaaag tgagccggtg
    26701 ttaatgttgg aagaacggga tactatttcc ctacgtttgc gagatcggat taaagacact
    26761 gcaaaggcag tggaaatcag cggctatgat acaagcggta aaaaagtggt gaaaaaacgc
    26821 aaaaaggcaa aagccttacg cccgaatata aaacaagcta aatcagccag tgaagatacg
    26881 ctgaaaatca tcacacgagg cgaaagtcaa gaacagattg atgcacgggg tgaggctgcg
    26941 ttggctacgc aaaatgaaga tcaggcggct ggtgatattg agcttatcgg caatcctaaa
    27001 ttggttgccg gagcaacgat tttattgcgt aactttggcg tgtttagtgg caagtatctg
    27061 attaaatcat cacgccatac gattagccgt agcggtggtt atactactca tattgaggtc
    27121 agaatgttgg agtttattgc cgatgattta atcacattag gtatggaggc tggcaatgca
    27181 aacgcataat tttggggcga cttatcaaga agggattgta tccgctgttg atccgaaaac
    27241 gcacaaagtg cggtgtaaaa tccctgcgct ggaagattta gaaactgctt ggctgtcgtt
    27301 tttgaccccg aacgccggtg gcaatcagtt ttactgtttg cccgatgtgg gcgagctggt
    27361 ggcaatgcta cttgatgcac aaggcgaagg tggctgtgtg tttggggcaa tttataacga
    27421 gcaagacccg acaccggttg ccgatagcga tatgtgggtt aagaaattca gcaatggcac
    27481 ggagatttcg cataatcgca aaaccggcga tgtggtagtg aagactaacg ggcatttaac
    27541 cgcaacggct caaggtgggg ctacgattaa tgcaaacacc gtagtcaatg gcacattgca
    27601 cgctaccggt aaaatcacct ctgacgaaga agtctctgct cctgttgtga aacaaggcac
    27661 ggtagagctt ggcacacata aacacggcgg tagccctgaa cctaataagt aattctttaa
    27721 accagtttaa aatccctttt aaagatagcc ctgtatcatc agggctatga acagacaaac
    27781 ttccattcaa ttaacccact ggcaacttgc accctcaacc gatacagttg aggtggtgca
    27841 aggtattgat gatattcatc tttgtattgt caatatcctt tcaacccaaa aaggcacgga
    27901 tattttacgc cctgaatttg gctctgacca ctttcgctac attgactacc ctgaagatgt
    27961 ggctatcccg aattttgtac gggaaattac aaccgccttg caaaaatggg aaaaacgcat
    28021 tgaggttgaa gaagtattgg tggacggttc agctccgcat tttattttta ctgtgatgtg
    28081 gcacttaacc gatgatgttt atcgtgaaat ttaccgaaca acggtataag gataggcaat
    28141 gacagaagcg attaaaatca ttgatgacga tgtaaaaacc gtacttgccg aagcgattgc
    28201 cgattatgaa aaacgcaccg gtaaaatctt acaacctgca catattgagc gttccattat
    28261 tcaaacctac gcttaccgtg agcagttatt acgcaaaggc attaatcacg cctttttaca
    28321 aacctttccg cagtttgcga cggggattgc gttggatttg tgcggggaaa cttttggttg
    28381 ttatcggctt agagataaac ctgcccgtac tttactacgc ttttcagtaa gtggtgaaca
    28441 tacagctata gttatcccta aaggaacgca ggtagcaatt aatgacgagc tatacttttc
    28501 aacgctcaat gacgatgtta ttactccatt aattacctat gtggaaattg atgcagagtg
    28561 taatcaggtt ggtgttatcg gtaatggttg ggaatcagga agagtcagta aactaaaaac
    28621 agcactggca actaattata aagtaacagt tgaaaacatt gatattacga gcggtgggtt
    28681 gatgcaggaa gaagatgaac cttaccgtaa gcgaatttta gccgcaccgg aagcctttag
    28741 taactgtggc tctatcgctg catatgatta ccacgtccgc tctgtatccc aagatattgc
    28801 agatgtgaat atctctacgc ctaggggtgg cttggtaaga attgcggtat tgacccaaaa
    28861 agggttaccg gatacccgat tacttgatga tattaaaaaa cacgttagtg ccgaacggct
    28921 acgcccactt tgcgatatgg tcgaggttat taagcccaca gaacgccgtt atcaaattac
    28981 ggcacgttta atattgttag atggctaccg tgaggatttg gtaaaagcaa aagcccgaga
    29041 ggcattacaa ctctatttgt cagacaagac taaaaaactc ggtttagaca ttgtgccgtc
    29101 ggccatcatt tcagctttaa gagttgaggg tgtttacgat gtgaatttaa ttcagccagt
    29161 caaaactatt atcaacgaaa cagaatgggc gaactgcaca gcaatcagcg tagaagtcga
    29221 agaggagcgt agagatggct agcttgcact atgcggacat tattgtgcga gaccctaaat
    29281 ataaagcatt agcggattta agcaagcggt taaatttgct cgatacttcg caaattatga
    29341 ctacgctggt ggatttattg ggcgacgaat gtatcccatt gctggcagaa aaatggtcgg
    29401 taaccggcta tgacggctta ttggttgcag atagcgaaaa ctcaaagcga gccttaatta
    29461 aaagagcaat cgaactacat caactaaaag gcacgccttg gtcaattcgt gaagtattac
    29521 gcagactagg tttcggagag gttgagattg acgagggact gaaaaatcgg ctgtatgaaa
    29581 gcacttatgt gagcggaatc cccgaaaacg aacgctgggc gcactatgcg attaggttga
    29641 gtaacccgat taccaatgag caagctcgca atatccgtaa ggtcttacgc aattttgctc
    29701 cggctcgttg ctctcttgca gttttggatt ataaagcaga tccaattcga tataacaata
    29761 aagcaaccta caacggcaca tataaccacg gttcaagtta aggataaatt atggcaggtg
    29821 tacaagaaac cgcacagtgg gaaaaccacg tttacagaat tgaagaaaat gacccagtcc
    29881 acggaggaga aaacggtgta accaataagc caattaagca cctagcaaac cgcacgctct
    29941 atctgcgtag attgctcacc gaggcaggac aacgcattaa cccgaaaaaa atcacagcta
    30001 ccagcaaaaa tagtaatgat ttaactgggc atactcacga gattgaccac gcaagcctaa
    30061 cgcaaaaagg cattgtgcag ttaaatgcga gtatccaatc aactagcaca actgagtctg
    30121 caaccccttc agcagttaaa gcagcctatg ataaagcagc aacagcagaa caaaaagcga
    30181 cattggcaaa tgagaaagtc gaggcgatta aagtaggcgg acgaaacctc ctcattcaat
    30241 ccaacactcc acacaacggg aatgcgtact cagtcagata cgcattggct gaggctccga
    30301 aagtaggcga agagattgta gtcactctat ggggtgaact cggctctcaa cgtactggaa
    30361 ttggcgttta caactctcaa ggtgctacgg agttggcaaa actggtcaaa attcgtgatg
    30421 gagtttatca aggtaaaggc atttggcgta agccgatgag tgagggacga gagcgaacgc
    30481 ctaacgacac gcacctgaat gtgtattttt acccgaaaac cgcaacagat aataaccgta
    30541 ttgagcgaat ccagcttgag cgaggctcaa tcggtacaga ttggacgcca aacgaggcag
    30601 acttaaaggc agagattagt gcaatccgca ctaaactaat ccctgtacgg ggtggcaatg
    30661 ttgctacaac cttaaatgcg gctaagcggt cggattggtt tagagaaatg caaatccctt
    30721 atcaaagtgg ttgggggtat tacacccaag catttcataa ctcagggacg caacacaact
    30781 acagcaattt accgctgaca ggtcgttatt attttatcgc cgaactctat cataactctg
    30841 gttattctca cttgcgtatc acctatccaa gtttaaaacg cacctttgag agtgctatca
    30901 accttaacaa tgaggatttg attctagatt ggcgtgaggt ggtgttttta aaagatggat
    30961 tgtatcaagg cacttttaaa acaacaggca cactagagtc tgcttatcgt ctaagagcgg
    31021 ctcgtgatga tgaacgttat cagccatacc tgcaaatggt cgatatgggc tatgaccttg
    31081 ccaatccccc ggtaggaaaa aacaaaatta ttggcagtgt tgattattac gttaaaaacg
    31141 gcacaagcga gtcttccaaa gcgacgatga tggcagcggc aatgcctgac aagaacgtat
    31201 tttgggaagt agcattgtgg aatgcagcac agcaacggaa tgtattgttt aaggggtata
    31261 gcaagactaa caatttgagt attggtaaaa ccaccgacaa tgagcgagac cgagtacaag
    31321 tcaatggcac aatccaagcc accgcaccgg ctgataacgc caataacgac caagtgccga
    31381 ctacggcttg ggtgcgtaag atggcaaaga ttttagctga tggcaaggtg agtaaagccg
    31441 gtgacacaat gactgggcat ttattcatca agaatgggga atactctgcg gtacatacct
    31501 ataacacaag tggttggttc gcaaaatggg aggcggcccc attatctgat tcgcactttg
    31561 ctgccattgt atatgccaac gacagagaga cagttatcaa tcgggtgtta attcccaaga
    31621 agaatggcac agtcgcttta attaatgata ttgccgatac cgttagagcc gctgtgagtc
    31681 gtagtgataa atcccgtagt agaacttttc ctctgcaaac ggggaaaaaa tatacaacca
    31741 cagggagcgt tacgatttat ccagatggcc gaattgtgca gattttccac ttaaaaaata
    31801 ttaaagcggc gtggtttgat tatgaggcaa gtgcggtagg agataggcat agagttgtca
    31861 atatccctct ttggactgcg atgccaaata aaatttttga tgtcgatgtt aaaactgttc
    31921 gcccctcaaa taatgcctca acttactaca tagaagcggc tgaatggctg agtgcgtggc
    31981 agatttacgg taatgacacg aacaaatcaa gtgtcaatat taatctatct cgattcagag
    32041 gtggaaagga tgaagatatg gacttgtatg taacagttga gggatattaa atggcatatt
    32101 ttgtgaatgt gattgatgag caaggcaatt atgagctaat tgatgatgag tttattgggc
    32161 tgtatccgga tttggatttt aacacattac ccaaactcac ggataagcaa tatcagacct
    32221 accttgccaa agcaaacggc aaagagcgat ttgtaaatgg cgaatttgtg tatgagcaaa
    32281 ttaaggtgga tatgcaagcg gtcatttccg ctgaaaaatc tgcaaagtta gcagagatta
    32341 accaaaaagc acaagccttt atcaatgatt tagccaaata caacgaaacg cctaagtttg
    32401 agcgtgatac ttggcttgag caagcgaaag aggcaaaagc gtgggtggct gacccaaccg
    32461 tacaaacgcc aacccttgag ttaattgcgc aaatgcgagg cataccgctc gacacgctac
    32521 gccaaaaagc ctacgaaaaa gcgatggcgt atcaaacggt ggctgctatt gtagcagggc
    32581 aacggcaagg atacgaagac cgcctagaac aagcggaaac cttagagcaa atacaggcga
    32641 ttgagccgat gtatcaatta ccgcaaggag caaacaatga gcaaactgac taaattaaaa
    32701 tcgtggagct accacgtctt aattgcaata gatcaactct ttaacgctct caccggtgga
    32761 gcagcggacg aaacattttc tagccgttgc taccgtggtg cagtgcttgc ggaaaatccg
    32821 aaaaaacgtt ggcgtttttg gcactctttt ttgaattgct tatttttaga cccaaagcac
    32881 tgctacgccg cttataaagc ggaggtacac cgcaagcagt atccgaaggc atttagactt
    32941 ggggggattt aatgaaaaag caaaacttaa aattagtgcg gggcgatgat gtgagtttta
    33001 gattcagcat taaagacagc accggacaac ctcttgcgtt aaaggatttg tggtttgatt
    33061 tgcacttagt cagctatcaa ggtgaggtgc tgattgctct ctctactgat gatggcagta
    33121 ttgagacagc agaggctggt cagatggtgt tacattttag tcaccagcaa actgctcgag
    33181 ctgaatggac aagtgccaat tatgacttgc aactcacgca cgactataca agagtctagg
    33241 aggtggagat gacctctatc attgaactag acctgactga tgacctcatc attgaggtgc
    33301 agttagatag cacaatcatt accggcgata gctttttagc caacctgccg gatttactcc
    33361 aaatttacaa ccaagcaaag tcagatagca gtaaggagct taacaatgac taaacacaaa
    33421 aaccacgaaa accacccgat tgctataaca ttctaccaac ttggcaaaga tgtcggcgac
    33481 attaaccgcc ggctagcggt tattgagcaa cgtgagcaat cagcacagcc aagccaacca
    33541 caagctgagg cggttacaat gccacagcaa gatgctgttg ccattaataa catcaatgcc
    33601 gttttggagg cggtcgaaaa atacaaaact tttgaaaaat acaacactca gtggcaagag
    33661 cgttttgaaa aattcctgtc tcgtaacccg aatgattacg agttaagtga agagcaacgc
    33721 caaaaacttt accacacgat gtgccagcat ttgtggcagg tgaactttac tgaaatcaat
    33781 agtaaacagt atgaattacc gatcccgcaa caattccagg gtaagtttgg ctatattgtc
    33841 aaaacctcgg gcggtagcac agaaattagt tttgagttgc tatctgaaac tcacagcact
    33901 tatctttatc cggatagcta tattcccgag ggcggtggcg atgtaatgct caagccggct
    33961 tatatttatt tagtgattcc ggacttagtg gcaatgcgtg agccggaggt ggtgggggtt
    34021 tcaccgctga aactgaacat tctgcagaaa cacctgctga cacctcagaa actacaggag
    34081 cagaagccct tgaacacgaa ggcaaactga ttgatggcgt atggcatttt gagcgagagc
    34141 cggtaaatcc accgagagat cagaattatt atgtggcagg taacctgttc tacaacggca
    34201 taccggattg ataaattgat gtttcagtaa acctaattag gggggaatcc ccctttttta
    34261 ttattataag gaaagaaaat gaataaatct ttagtagcgt tagctgttgc agcgatggca
    34321 tcgaaagcac aaactaaa
//
LOCUS       DANMGB010000006        30819 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.006, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000006 DANMGB010000000
VERSION     DANMGB010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30819
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.006"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1121
                     /gene="ompA"
                     /locus_tag="PXG19_000222"
     CDS             <1..1121
                     /gene="ompA"
                     /locus_tag="PXG19_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL6065567.1"
                     /translation="ALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQFDNTYDY
                     GSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTTFSGDDK
                     EKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSRIKVHNL
                     KPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQYSPDIH
                     SVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDAAHAEIS
                     NLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAVGYGEAN
                     PVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
     gene            complement(1187..1633)
                     /gene="matP"
                     /locus_tag="PXG19_000223"
     CDS             complement(1187..1633)
                     /gene="matP"
                     /locus_tag="PXG19_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL6065568.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            1726..3363
                     /locus_tag="PXG19_000224"
     CDS             1726..3363
                     /locus_tag="PXG19_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6065569.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            3476..4006
                     /gene="fabA"
                     /locus_tag="PXG19_000225"
     CDS             3476..4006
                     /gene="fabA"
                     /locus_tag="PXG19_000225"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL6065570.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(4074..5000)
                     /gene="rfaD"
                     /locus_tag="PXG19_000226"
     CDS             complement(4074..5000)
                     /gene="rfaD"
                     /locus_tag="PXG19_000226"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL6065571.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(5094..5606)
                     /gene="def"
                     /locus_tag="PXG19_000227"
     CDS             complement(5094..5606)
                     /gene="def"
                     /locus_tag="PXG19_000227"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL6065572.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            5695..6843
                     /gene="dprA"
                     /locus_tag="PXG19_000228"
     CDS             5695..6843
                     /gene="dprA"
                     /locus_tag="PXG19_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL6065573.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            complement(6938..8288)
                     /locus_tag="PXG19_000229"
                     /pseudo
     CDS             complement(6938..8288)
                     /locus_tag="PXG19_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(8301..8570)
                     /locus_tag="PXG19_000230"
     CDS             complement(8301..8570)
                     /locus_tag="PXG19_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6065574.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            8801..9823
                     /locus_tag="PXG19_000231"
     CDS             8801..9823
                     /locus_tag="PXG19_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6065575.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPTKLV
                     IRDSAA"
     gene            9936..10349
                     /gene="secE"
                     /locus_tag="PXG19_000232"
     CDS             9936..10349
                     /gene="secE"
                     /locus_tag="PXG19_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL6065576.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            10351..10914
                     /gene="nusG"
                     /locus_tag="PXG19_000233"
     CDS             10351..10914
                     /gene="nusG"
                     /locus_tag="PXG19_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL6065577.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            11147..11575
                     /gene="rplK"
                     /locus_tag="PXG19_000234"
     CDS             11147..11575
                     /gene="rplK"
                     /locus_tag="PXG19_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL6065578.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            11580..12269
                     /gene="rplA"
                     /locus_tag="PXG19_000235"
     CDS             11580..12269
                     /gene="rplA"
                     /locus_tag="PXG19_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL6065579.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            12331..12750
                     /locus_tag="PXG19_000236"
     CDS             12331..12750
                     /locus_tag="PXG19_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065580.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            12837..14059
                     /locus_tag="PXG19_000237"
                     /pseudo
     CDS             12837..14059
                     /locus_tag="PXG19_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            14052..14456
                     /locus_tag="PXG19_000238"
     CDS             14052..14456
                     /locus_tag="PXG19_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL6065581.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            14556..15989
                     /locus_tag="PXG19_000239"
     CDS             14556..15989
                     /locus_tag="PXG19_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6065582.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITVKIASEILDRSKELSRRIL
                     KSLEQKNILTWHGLSPKDPTQYYTLKR"
     gene            16003..16731
                     /gene="fabG"
                     /locus_tag="PXG19_000240"
     CDS             16003..16731
                     /gene="fabG"
                     /locus_tag="PXG19_000240"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6065583.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            16794..17939
                     /locus_tag="PXG19_000241"
     CDS             16794..17939
                     /locus_tag="PXG19_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL6065584.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            17953..18858
                     /locus_tag="PXG19_000242"
                     /pseudo
     CDS             17953..18858
                     /locus_tag="PXG19_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            18881..20023
                     /locus_tag="PXG19_000243"
     CDS             18881..20023
                     /locus_tag="PXG19_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL6065585.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            20072..20287
                     /locus_tag="PXG19_000244"
     CDS             20072..20287
                     /locus_tag="PXG19_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6065586.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            20568..21059
                     /gene="rplJ"
                     /locus_tag="PXG19_000245"
     CDS             20568..21059
                     /gene="rplJ"
                     /locus_tag="PXG19_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL6065587.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            21118..21486
                     /gene="rplL"
                     /locus_tag="PXG19_000246"
     CDS             21118..21486
                     /gene="rplL"
                     /locus_tag="PXG19_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL6065588.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(21593..22423)
                     /locus_tag="PXG19_000247"
     CDS             complement(21593..22423)
                     /locus_tag="PXG19_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6065589.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            22649..24190
                     /locus_tag="PXG19_000248"
     CDS             22649..24190
                     /locus_tag="PXG19_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL6065590.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            24193..24981
                     /locus_tag="PXG19_000249"
     CDS             24193..24981
                     /locus_tag="PXG19_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL6065591.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            24994..26251
                     /locus_tag="PXG19_000250"
                     /pseudo
     CDS             24994..26251
                     /locus_tag="PXG19_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(26330..28339)
                     /locus_tag="PXG19_000251"
     CDS             complement(26330..28339)
                     /locus_tag="PXG19_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6065592.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(28349..29686)
                     /gene="rimO"
                     /locus_tag="PXG19_000252"
     CDS             complement(28349..29686)
                     /gene="rimO"
                     /locus_tag="PXG19_000252"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL6065593.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(29841..30533)
                     /gene="mtnN"
                     /locus_tag="PXG19_000253"
     CDS             complement(29841..30533)
                     /gene="mtnN"
                     /locus_tag="PXG19_000253"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL6065594.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(30591..30812)
                     /locus_tag="PXG19_000254"
     CDS             complement(30591..30812)
                     /locus_tag="PXG19_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL6065595.1"
                     /translation="MDNNYTLSAKITELETKVAFQELIIEELNQALIEQQFAIDKLQT
                     QIRHIAEKLKGAQLSQVASQAEETPPPHY"
BASE COUNT         9111 a         6135 c         6728 g         8845 t
ORIGIN      
        1 ttgcattagc agtattatca gcagctgcag tagctcaagc agctccacaa gctaacactt
       61 tctacgcagg tgctaaagct ggttgggcat cattccacga cggtttaact caatttgaca
      121 acacatatga ttatggatcc ggtattaacc tcggtattaa cctcggtatt aaccgtaact
      181 ctgtaactta cggtgtattc ggtggttacc aaatcttaaa ccaaaacaac tttggtttag
      241 cgacagaatt aggttatgac tactttggtc gtgttcgtgg taacactaca ttttctggtg
      301 atgataaaga aaaaactgcg gctaaacatt cagctcacgg tgcgcactta agcttaaaac
      361 caagctacga agttgttcct aacttagatg tttacggtaa agtaggtgtt gcattagttc
      421 gcaacgatta ctacgtacaa caacatgtag ataaagattc acgcattaaa gttcacaact
      481 taaaaccatc tctattatta ggtgctggtc ttgagtatgc aattactcct gaattagctg
      541 ctcgtgttga atatcaatac ttaaatcgtg ttggtaactt agataaggca gttcgtacaa
      601 cagttggtta tctaatacca agaggtacaa atttccaata cagcccagat atccactcag
      661 tatctgcagg tttatcatac cgtttcggtc aaggtgcagc accagttgaa gcaccagaag
      721 ttgtaactaa aaacttcgca ttcagctctg atgttttatt tgatttcggt aaatcaagct
      781 taaaaccagc agcagcaact tctttagatg cagcacacgc tgaaatcagc aacttaggct
      841 tagcaaacct agctatccaa gttaatggtt acacagaccg catcggtaaa gaagcatcta
      901 acttaaaact ttcacaacgt cgtgctgaaa cagtagctaa ttacatcgtt tctaaaggta
      961 ctaacccagc taatgtaaca gctgtaggtt acggtgaagc aaacccagta actggtcaca
     1021 catgtgatgc agttaaaggt cgtaaagcat taatcgcttg cttagcacca gatcgtcgtg
     1081 ttgaaatcca agttcaaggt tcaaaagaag taactatgta atatagttat tcagttgaaa
     1141 aattgaatca aaaaaagccc gcttgttagt gggctttttt ctttttttat ttcagtaaat
     1201 cttttaaact tgatttcatt ttagcaactt gctctaagta aagttgttta ttttcgagtt
     1261 catcggttaa tttgacaata gcttcagaaa gcgttagttt ttggcttttg gcatatttag
     1321 agagccttaa ccagctcgaa tactctaaat caatggattt tttcttggtt gtttgctttt
     1381 cagcattaaa gaagcgtttg cgtttggcgc gtactgattg acgcattttc ttacgttgct
     1441 caggcgtcat ttccgactta atccattttt ccacttcgtc cggagagttt tgcaaagtag
     1501 agaggaactg aacttttaaa tcgatcaagc tttgttcttc gtacttagta atattttctc
     1561 cttcacgatg tttttttagg agatattgcc atttccaagt tgtttcttgg gtgatgagtt
     1621 tctgatatcg cataatctga atatgatagg aaaaagtaag ctatatttag caagtatagc
     1681 ggaattttgt ataataaacc aaattttcaa taatgaggca gatttgtgac cctttcttta
     1741 cttagtagcc aaaaattagt aatgcaaaat gatttctctc gtttagatga gaaattgaat
     1801 tttttagatt ttcaacctca agcaaaacaa gcgttaaatc aatttttaca atctcagttt
     1861 ggtgctttat tagtcttaaa atctgagctt tttccggaat ttatcaatga aatcacggaa
     1921 tatctgaaaa aatatagtgt agatctgccg attattagca aaatggattt caataaaaat
     1981 agtctatttg gttattctgt gtttttggaa agagagctga aaacagaata tgttaaaggt
     2041 gcaattcacg aggcagataa gggaatttta attgttaata tccgttcgct cttattggat
     2101 attacccaat gggataagct aaaacaggca ttattatttg gtgaatatga gccaaattct
     2161 gttaatcact caccctattt atcggctaaa gagaaatcaa catttaaatt gattttagta
     2221 ggggaaagag aagatatttc tactttatct gcttatgatg atgggttgta ccaatttggg
     2281 caatataccg aaataaaatc ctacttatca ttatcggata atgtggagca gtggggaggt
     2341 tatgttcaga attatgctga gaatctcatc aataagcgat taacttccac agcgcttaat
     2401 caatttttac aggcctatat acgtgaaagt gaaagccgag agttggtgtc tatttcccct
     2461 acattattga gaaaacattt attaggaatt caaaattttt acccaaatgt gaccgaaatt
     2521 gacgaggtaa aaggttattt tgattattta gaacagcaat catcgatatt aaatcaatat
     2581 acggtgggtg atattctgac taatcaactt tatattgaaa ccgaaggaga ggaaattggg
     2641 cagatcaatg gcttatcggt cattgagttt gaaggcattc cgcatagttt tggcgagccc
     2701 ttacgcatga gttgtaatgt acaatatggt gatggcgaaa ttacagatat tgagcgtaaa
     2761 gtggagctag ggggaaatat ccactccaaa ggtattatta tcgctcaatc ttgtttagcg
     2821 aatctgttag aactaccaac ccagttaccg ttttcagctt cgattgcttt tgaacaatcc
     2881 tatggtgaaa ttgatgggga tagttcttct cttgcgattt tcaatgtact agtgagtgcc
     2941 ttagctaaag ttggcttgcc acaatctatt gcggtgacag gtgctatcga tcaatttggg
     3001 aatgtgctaa gcgtgggcgg ggtaaatcag aaaattgaag gcttctttaa tatttgtcac
     3061 gctcgccaat taacggggaa acaaggtgtg attattccgg cggcctgtgt tagccatttg
     3121 agtttaagtt cagaagttgt tgaggcagtg gagcaaggtc tatttaaaat ttggacggtg
     3181 gaaaatgtgt ttgatgccat agcgattctg tttgagcggg atttttatga tgatgagaaa
     3241 gcccctaact cagcccaaac agcattattt accttgattc accagaatct agatgagcgg
     3301 gaaagtgaag aaacaagcgg ttcattttta agcaaaattt gcaaaaagat aaagctagac
     3361 tgatccgaca agtcagctta caactgttca ctgaattaaa agtctgttac tatcagcctg
     3421 atttatcagt tattgatata acaggctttt ttcactttac aggattttaa aaataatgaa
     3481 cagttgtaca ccaattatca aaccaagcta tacttacgaa gagcttttgc tatcaggaaa
     3541 aggagaatta ttcggtgaaa aagggcctca attgccggct ccaccgatgt taatgatgga
     3601 tcgcatcatt gaaatgaacc aagaaaaagg caattttgaa aaagggtata ttgaagctga
     3661 gtttgatatt aaaccggatt tatggttttt taactgccat tttattaacg atcctgtaat
     3721 gccgggttgc ttaggcttag atgcgatgtg gcaactggtt ggtttttatc tcggctggat
     3781 tggtggcgaa ggcaaagggc gtgcattggg cgtaggtgaa gtaaaattca ccggacaaat
     3841 tttaccgaca gcgaaaaaag ttacttaccg tatccatatg aaacgtgtgg tcaatcgtaa
     3901 gttagtgatg ggggttgctg atggtgaagt cgaagtggac gggcgagtga tctatactgc
     3961 tactgattta aaagtaggct tattccaaga tacgacagca ttctaatcct tataacctta
     4021 taacaaaaag agctacattt cgtagctctt tctgcttttt taacaacgtt tgattagcga
     4081 ttcaaccacg ccatatattc cgctgttcct tcagcaacgg ttttaaatgt gcctgtgtag
     4141 ccagcggctc ttaggttggt taagtccgct tgagtgaacg tttggtagcg ggattttaaa
     4201 tgatccggga atgggatggt ttcaatttcg cctttgccgt ggtatttgat aaccgcattc
     4261 gcaacttctt ggaaagattc cgcttttccg gtgccgaggt tgaaaatgcc agaaatgctg
     4321 ttttgccacg cccaaagatt cacttttgcc acatcttcca cataaacaaa atcacgcaag
     4381 aactgctctg agccggcaaa tagttttgga ttttcccctt ttaacatctg gttgtttaag
     4441 tggaatgcca cgcttgccat tgaacctttg tgttgctcac gaggcccgta tacgttgaaa
     4501 tatttgaaac cacagaccgg tgattctgcc tcaggcaaaa tacggcggac atattcatca
     4561 aacaggaatt tggagtagcc ataagcattt aatggacctt caaactcccg tttctcgata
     4621 aaattatccg aacgtccgcc ataggttgcc gcacttgagg catagaagaa aggaatttgg
     4681 cgatctaagc aaaaatgcaa taactctttt gaatattcgt agttattttg cattaagtat
     4741 ttgccgtccc attcggtggt tgccgagcaa gccccttgat ggaaaaccgc atcaatctca
     4801 ccaaaatcat cgccggcgat aatagaggcg atgaaatcct ctttatcgca ataatccgca
     4861 atatctaagt ccactaagtt gataaatttt tccccgtttt tgaggttatc tactactaaa
     4921 atatctttgc gaccgatttc atttaaggct ttaacaatgt tactgccaat catacctgcg
     4981 ccgccggtga cgataatcat atttttatcc tttctaaagt tgaactgtgg ttattatcgt
     5041 gtcatcacac ttaatttgca aatttttaag ccattttaac cgcttgtgcc tggttatttc
     5101 gctcgtgcaa tttgcttttt caatttttgc attttttctt tgatgcgttg gcgttttaaa
     5161 ttggatatgt ggtcaacaaa aagcacgccg tttaaatggt cgatttcgtg ttgaatacaa
     5221 atcgcaaata aatcatcggc atcgatgata atttcttcgc cttggcggtt aagggctttg
     5281 actttcactt tctctttgcg tggcactaag gcacgatgcc cgggaatgga gagacagccc
     5341 tcttcaatgc cggtttcacc gctgctttct aaaatttcag ggttaattaa caccacttga
     5401 ttggttttgt cgccctcaat atcaatagta ataacacgct taagtacgcc cacttgcggt
     5461 gcagctaagc caataccttc gtgttcgtac attgtctcaa acatatcatc gataaaacga
     5521 ttcagtgctt cgtccacctg ttccaccggt tcacaaacgg ttgccagttt ctcatcgggg
     5581 taaagcacaa catctaatat tgccattttt gtgatctctc tcgaaaagtt taaaaaattc
     5641 gtttggctat tttaaacctt ttcttattat tagggaaatt ttgaggatga aaatatggca
     5701 tatcactacg atttattacg attattacaa gtgccgcaaa tgggggctca acgtataggg
     5761 cgattattgg cggaactcaa ttttgctgaa ttttgccact atgacaaact tcaactcaaa
     5821 caaataggtt ggaatgaaaa gcaaattcaa cgttggttta atcctgatca aaagtggatt
     5881 gatcaggcga tgacttggtc agaattgcca aatcagcaaa ttgtgacact ctttgatgaa
     5941 aattatccgt ttctcttaaa acaaatttcg actgcgccac cgttaattta tgtaaaggga
     6001 aatgtggaaa gcctttctct gccacaaatt gcgattgttg gcagccgaga ctattctcat
     6061 tatggtgaat attgggctgg gcaatttgct gccgaattag ctcgccataa tattatcatt
     6121 accagcggtt tagccattgg tattgacggt tttgcccatc aaaaaatcgt tatggaacaa
     6181 ggcataacga ttgccgtgtt agggagtgga ttaaatcaag tctatcctgc tcgccataaa
     6241 aaattagccg aacaaattgt tgatttaggt ggtgcattgg tgtcggagtt ctcgcctaat
     6301 cagccgccgg tggcagaaaa ttttcctcgt cgtaatcgaa ttattagtgg cttatcgctc
     6361 ggcactttag ttattgaagc aacgcttaat agtggttcac tgattaccgc tcgttatgcc
     6421 cttgaacaag gtagggaagt gtttgcgtta ccgaatgcgg tacaaaaccc ttacgcacaa
     6481 ggttgccaca agctaattaa agaaggggca ttgctcgtgg aaggtgtgga agatatttta
     6541 gaggtggtcg cctcgcaata tcaacctcag caaatccctt tgtttgatga gtctaagcca
     6601 acagtaagca catctttaca agcggtcaaa aacagcgaaa aattcgcaaa aaatctgcca
     6661 agtctgaccg cttgccagca gcaaatttat cagcatatca gcttagagcc gatggcaatt
     6721 gatgatttag ccaaagttac ggagttgacg attgaaatat tgctggttga attactgggt
     6781 ctggaattag ccggtgtgat taaacaagtg agtggggggt atgtgatgga taatgggtat
     6841 tgaacaagag cgttgtcgtt taactaaaca aaattcccta ccatcaagaa atggcaggga
     6901 agattcctcg caggcagcaa ataacacctg attttaatta ggtattcagt tttgccggtt
     6961 ttttcgccaa ataattatag gctaccaaca gagcgaataa gccgacaata atgagcgtaa
     7021 tgatattctt gtcgaagtat tgagccatat agcctaacac aatcccaata ccgccgaagt
     7081 ctgagtcaga gaaagtggtg ttagcaaagc ctaatgaacc cagtacaggt aataagaata
     7141 caggcaagaa ggtaattaat atgccgtgaa taaaagcacc gataattgca ccacgacgcc
     7201 cgccggtggc gttcccaaat acgccggcag ttgccccaca gaagaagtgt ggcactacgc
     7261 ccggtaaaat taacacccaa ttaagttgcc ctagaatggc taagcttaaa atcccaccta
     7321 agaaactggc aagaaatcca actaataccg cattgggggc gtaagggaaa acaatcgggc
     7381 agtcgagagc cggtttggca tcaggtacta atttttcgga gaagccggta aatgccggga
     7441 cgatctcggc taaaattaaa cgaacccctt gcaaaatgac ataaacaccg gctgcaaaag
     7501 tgatggcttg aatggtggca tacactaaat aatgttgtcc gccgcttaat gtagaaacgt
     7561 attcactgcc cgaagcaagg gcgagaatat agtaaatcgc catcatcgtg agtgaaatag
     7621 aaatggagct atcacgtaag aagccgaggt ttttaggtaa atccatttct tcggtagatt
     7681 tagagccttt tcctaccagt tgcccgattg aaccagcaag cacgtagccc aatgtgccga
     7741 aatgacctaa ggcaacatca ttgctagcgg tcactttttt catatagaag tgagcgatag
     7801 tcgggaaaca taattaaccc taaggttaat gccccgacaa agacgagctg aataccttca
     7861 aagccggcaa cggttaggat tacgccgatc atacacgcca tatagaaggt atggtgtccg
     7921 gttaagaaaa tgaattttag gcgggtaaaa cgtgcaatta aaatattggc taccataccg
     7981 aatgccataa ttaacgcagt cgccgtacca tatttttcga ttgccataga cacaatcgct
     8041 tcgttattag ggataatgcc ttgcacgttg aaggcgtgtt caaacatacc gcctaaagga
     8101 gtcagggagc ttaaaagtac tgttgcacca ccgcttaaca ctaagaagcc taaaatagtt
     8161 ttgattgttc ctttaacaat atcggatacc gattttttct gtgcaactaa accgaccaga
     8221 gcaattaaac ccactagaac ggaaggcact ttgagaatat ctaatataaa aaagagtagc
     8281 gattccatat aacatctccg ttattggtta aagtaagcgg tcaatttttc ttcgaattct
     8341 gctaatccaa caatgttttt taccacgatg agtttttctt tcggcacatt gctgcttgcg
     8401 gcaatatctt ttgccatcac aaataaatca gcatcatcag caacaacaga ggaaaggtcg
     8461 gtatgactca cttccgcttc gacaccgagt tttgccaata cttttttaat gttcatttcc
     8521 atcataaagc tgctacctaa gccggaacca catactgcca taattttcat agtaaatctc
     8581 cattaaaggt gaatgaatag ttgtctgaat tttgaactat agaaatacta tagaatagaa
     8641 atgttaacgc tatcaaacag aaaatattaa aaatgtgata gcgttaacat ttttagtatt
     8701 taattagata aaaaataatc agttggcatt ttgctctgtt ctttctaaat aggaaaatta
     8761 aggatttagc cctataatat ggaacaatta ggaaaatagt atggcaaatg gaacaagtag
     8821 aaatcgaaga tcttcgggca gagtcacttt agctgatgta gccaaagttg ttggtgttgg
     8881 gcagatgacg gtatctcgtg ctttgcgtac accagaaatg gtgtcggagc cactacgtaa
     8941 acggattgaa gaggcaatca ttgaactagg atatattccg catttttctg ctcggcaatt
     9001 agcttctgca gaatcacata atttggtcat tgtgacgacg tcgattagct caacggaaaa
     9061 taccttaatt ttatcggcat tacgcaaaag cgtggcggat tccgcattgc aaatggtgat
     9121 tttgatcgct gatcaagaat cttggtttca agaactgatt aatcatgctc ctcaagcgat
     9181 agtgtttttg aatttagatt gccctcctaa tgtccgtgag tggattaaaa acagcaatat
     9241 ccctaccgta gaaataggtg cgataaaaaa agaaccgatt catctcagtg ttggaattga
     9301 tagccacgaa gcaatggaga aaatgatcca ttttttggtg aaaaaaggct atcgagagat
     9361 tggattgtta tcggcgaagc aagatttatc catcttcaaa caatatttag aaagttggca
     9421 tacgacttta tttgcacatc atatttctcc tttaaaaatc caccacgtag tagaggatat
     9481 ttcgttttcg gcaggagcaa ctttgttgac tgaagccctt ctaaattggg aagcaataga
     9541 tgcattggtt tttttatccg atgaattggc ttgcggagca ttatatgaag cattacgccg
     9601 acatatgagc attccaaaag atcttgcgat tgccggttta ggtggtttag aagtggggag
     9661 tatttcctac cctaaattga caaccattgc gatcccttac gagcaaatgg gaaaaatagc
     9721 aggtaaacaa ctacttactc ttttgagtgg taaaacctta tcagcagaag agatgattgt
     9781 taaattaccg actaagctag tgattcgtga tagcgccgca taatattgat tttgcataaa
     9841 aatctataaa agatcgtggc aagtcttgta gaaaatgata gaatttaacg ctttaaaata
     9901 atttctgatt tttttattca ttttttaggt tatatatggc tactgagatt aaaacaaaaa
     9961 cccccgagca agtcgaacaa aaagggggga aaagcaaagg tgcaaataca gcattatggc
    10021 tggttgcgat tgtattttta gcagttgctg cggtaggtaa tgcctatttt tcatctcatt
    10081 tttcattaat tgttcgagtg cttttattgg tggtgttgct agttggtgct gttgcactag
    10141 cggcaattac aaatcagggg caaaaggcaa ttcattttat taaagagtct cgaaccgaac
    10201 tacgcaaaat tatctggccg acacgccctg aagcaacaca aaccaccttg attgtattgg
    10261 caatgtgcgt agtagtttcc ttggttttat ggggtattga ctcaatcatc gtcgcattaa
    10321 ttacatttgt aacaagttta aggttctaaa atgagtgaag tagaagtgaa agaaaatggc
    10381 tcaaaacgct ggtatgtatt acaagcgttt tcaggctttg aaaaccgtgt ggcagtaaca
    10441 ttgcgtgaat acattaagct tcacaaaatg gaagagcagt ttggtgaagt attagtgcca
    10501 accgaagaag tcgttgaaaa tgtgggcggt aaacgccgta aaaccgagcg taaattcttc
    10561 ccaggttatg tattggttga aatggaaatg aatgacgata cttggcattt agtgaaaagt
    10621 gtgcctcgtg taatgggctt tattggtggt acggcagatc gccccgcacc aattaccaaa
    10681 cgtgaagcag accgcattct aaaccgtgta caagaaacag cggaaaaacc acgccacaga
    10741 aaagaattcc aaccgggcga aagcattttg gttacagaag gtccgtttgc agatttctcc
    10801 ggtacggtcg aagaagtgga ttacgaaaaa ggtcgcttaa aagtatcggt gtcgattttt
    10861 ggtcgtgcga caccggtaga attagaattc agtcaagtgg aaaagcagag ctaatttcaa
    10921 ttaatttcac acacaagcgg ttatttttct caattttttg caaaattcag cggaaaaaag
    10981 accgcttgta acaagattta ttcaacaaag cgaaagtttt gcttgaaaaa tagtcgcaaa
    11041 ttctttaaaa tttgcgacct attacgagcc agcctgctga ctcgtatttt ttatgtaaca
    11101 ggggagctga ttttcagcgt tatcacccat ttagaggaaa attaaaatgg caaaaaaagt
    11161 ccaagcctac gttaaactgc aagttgcagc gggtatggct aacccatcac caccggttgg
    11221 tcctgcatta ggtcaacaag gtgttaacat tatggaattc tgtaaagcat tcaacgctcg
    11281 tactgagagc ttagagaaag gtttaccgat tccggttgtt atcacagttt acgctgataa
    11341 atctttcaca ttcgttacca aaactccacc ggcggcagtg ctactgaaaa aagcggtagg
    11401 tatcaaatct ggttctggta aaccgaacaa agataaagtg ggtacagtaa ctcaagagca
    11461 aatccgtcaa atcgctgaaa ctaaagcagc agatatgact ggtgcgacta tcgaaaccaa
    11521 aatgaaatca atcgctggta cagctcgctc aatgggctta atcgtagagg aataatacaa
    11581 tggctaaatt gactaaaaaa atgaaagcaa ttaaagctgg cgtagattct actaaagctt
    11641 atgacatcaa cgaagcagtt gaagtgttaa aaaaattcgc aaccgctaaa ttcgttgaga
    11701 gcgtggacgt tgctgtaaac ttaggtatcg attctcgtaa atcagaccaa aacgtgcgtg
    11761 gtgcaaccgt attaccacac ggtacaggcc gtaccgctcg tgttgctgtg tttacacaag
    11821 gtgcaaacgc agaagcagca aaagcagcgg gtgctgactt agtgggtatg gaagatcttg
    11881 cagagcaaat caagaaaggc gaaatgaact ttgatgttgt tatcgcttct ccagatgcaa
    11941 tgcgtgttgt aggtcaatta ggtcaagtat taggtccacg cggcttaatg ccaaacccga
    12001 aagtaggtac agtaacacca aacgttgcag aagcggttaa aaatgcgaaa tctggtcaga
    12061 tccgctaccg taacgacaaa aacggtatta tccacactac tatcggtaaa gcagacttct
    12121 cagctgaaca attaaaagat aacttaaacg cattgttagc tgctttaaca aaagcaaaac
    12181 caacaacagc aaaaggtatc ttcatcaaga aagtaagcat ctctactaca atgggtgctg
    12241 gtgttgcggt tgatcaagca tcactttaat ttttaataga atcaaaagac cgtagtgtta
    12301 atactctacg gtctttttct ttaggtacga atgttaagat tattatcttt ttgctttatt
    12361 tttttgctta gtgcttgtac tgtattacct caaattaagc aattaccgcc acaggttgaa
    12421 tctgtaaaat cctttaaagt tgaaaataat ggccagcaaa gtttgcttct aattcaattt
    12481 tatgaaaata aatggcgttg gattcaaact gatcctttag gtgctcctat tgccagagta
    12541 tggcttacta aaaaaggttg ggagccagat ggctttgtaa tgccaaataa gcaggcacag
    12601 ctattattta cagctttagt caatgcatta aaccctcatt ctccaccttt ttatttagat
    12661 aaaggttgga aaattgagag ggaaaaatcc caatttacga tttggctacc agatagcagt
    12721 aaatggaaag tggaaatatt gggggaataa gcgaaaactt gaacctctat gcttgaatca
    12781 cttgaatatg aattttataa ttttagtgcc attacacaat aatactggaa taaataataa
    12841 tgacactata tttatcagag cccgccatca ccagtccgat tggatatggc atcgtggagc
    12901 atttgaatgt tttaattaat gcgaaagtat ctcctttaga tacgacttca cagccttatt
    12961 tacgacataa tatttcaaat agttcaccga aatttctagg gcaagtctct gctagattgc
    13021 gtgattttcc tgttgaacta tctattgaac accgcagccg caataaccaa ctgctatggc
    13081 acgcccttgc agaaattgag ccgaaaatta ccgcttgtat cgagcaattc gggcgtgagc
    13141 ggattgcggt gatcatcggc acgtccacta ccggcgccga tgaaaatatt cccgtcttca
    13201 aagccggtgt gcagggcgat tatgccaccg agcagtttaa tcaacagcaa attctcttct
    13261 ctgcgccgtc tgatttcgtt gccgaagtgt atggcttaac ggggctgagt tacggcattt
    13321 ccaccgcctg cacctcagag gcaagagcgt taatttctgc tgcccgttta ctgaaagccg
    13381 gcttgtgcga tgcggtgatt tgcggtggtg tggataccct ttcgccttta actatcagcg
    13441 gatttagctc gctggaagtg ttatcaaacc aacaaaccaa cccattttcc gctaaccgta
    13501 acggcattaa catcggcgaa ggcgcagcgg tgtttgtgat gagccgtgaa ccactggacg
    13561 aacatcgcat tcagttactg ggttatggtt ccagctcgga cgcttaccat atgtcctcac
    13621 ctcaccccga aggggaaggg gcaatttccg ctttccaaaa tgccctgcac aatgctgatt
    13681 tagacgcagc cgacatcggc tggatcaacc tgcacggcac agggacgctt cataacgatc
    13741 aaatggaaag cctcgctgtg gcaaaaatct tcggtaatca gaccgcttgc accaccacca
    13801 aaccctacac cgggcatacc cttgggctgc cggtgcggtg gaagcggcaa ttttgtgggg
    13861 aatgctctgt cgccaacaca acccgaccgg caagctccct gcgcaattat gggataaaca
    13921 agcggacgaa aacctgccga acattgcgat caccgatgaa cagagccgtt gggcagcagg
    13981 cagacggatt ggcgcaagca gctcttttgc ctttggcggc aataacagcg tactgatttt
    14041 gggagaaagc gatgcataaa ttcaccttcc ctatcgaaca aattgcacca ttggttcctc
    14101 acagtggcaa tatgatccta ctcgaccgca ttaccgcatt cggcgaggat tttttgaccg
    14161 ctgaaaccaa tattcgccct gacaatccgc tgatcaaaca cggaaaactt gccacctacg
    14221 ccagcattga aattatggca caagccggcg aaccagttcg cttaggctac ctgctcggca
    14281 ctcgcaaact gcacctccac cgccaagaaa tcccgattgg ctcacagcta caaattcaga
    14341 tcaaaatgtc tattcaagat gccaccggct tcggcgtatt cgactgccaa ctgatcgatt
    14401 tagccgacaa ccaagtgctt ttagaagggg cgctgaatgt gtttagtccg aaatagagtt
    14461 ggtagtagta agtagtagta agtagtagta agtagtagta agtagtagtt ggtagtagtt
    14521 ggtagtagtt ggtagtagtt ggtaggaaat tcgttatgca agaggcctat gacattcaac
    14581 atctttgtac tcgcaaagaa gataaatcct ttgatcgcaa aagtgcgaga aaagaaccga
    14641 aagagatttt gcggcatttg attggttttg cgaatgcaga cggcggttta ttagttattg
    14701 gtattgaaga taatggcgaa attaccggtt ttaactacca aaaagcccat cagccggaag
    14761 aatttatcca cgctctgcac aatttacaaa aaatgccgat accggtgacc tatcagcaaa
    14821 ttgaggtggt aaatagtcga ggtttagcgg attttgtctt attatttgaa gttacagctt
    14881 cgagtgggag ggtgattacc tctcacgatg atcgggtttt tctacgctca aaagatcaaa
    14941 ctttggaact caattttgaa caacgtttgc aattagagta cgaaaaaggg cagcgtgctt
    15001 ttgaagagca accgatagca cgcgctgatt ttactgatct ggatatggat ttattagaac
    15061 agtatcgaca gaaattacac acagatcgct caatagaaga gattctgaaa gcccgagatt
    15121 taattaacaa agaagggcaa attacgaatg cctgtatttt gctatttggg aataacccga
    15181 cacgttattt tcctaatgcc cgtttgcgtt ttttgcggta tgaaggtaaa gcacctctga
    15241 ccggtagaac ttttaatgtc gtcaaagaat ttatgcttga agagcctatt cctaagttat
    15301 tggagagtgc taaggcagta ttaaaaagcc aattacgaga gttccaacgt ttagatgaaa
    15361 acgggcaatt cacaaaaatt gatgagtatc cagaatttgc ttggttagaa ggtattgtca
    15421 atgcgattgc acaccgtagt tacagtaatc aaggggactg cattcgcatt tcgatgtttg
    15481 atgaccgttt ggaaattttt agtccgggtg gattacctcg ccctgtgacg cttgaaaata
    15541 tgtactatac ccgtttttca cgcaatccga agattgcacg agtgctgtat gaatttggtt
    15601 gggtcaaaga gctgaatgaa ggtgttaatc gtatggcgga ggaaatgaac gcttaccaac
    15661 ttaatacacc ttcttacttt gaacccaatg aaaatgcggt cagactgatt ttagaaaata
    15721 atattgaaca tcggacatta agggcattag aacgaataga agaaattttt acgcaggata
    15781 ttatggcgac attaaataaa aatgaagtta ctatcctgca atatttatat gaaaatgaaa
    15841 tgattactgt aaagattgct agtgagatat tagatcggag taaagaatta tctcgtagaa
    15901 tattaaaaag tttagaacaa aaaaatattc tcacttggca cggcttaagt ccaaaagatc
    15961 caacccaata ctacacactc aagagatagt aggaaatata agatgaataa tacagttctc
    16021 atcaccggct caagccgtgg tatcggtaaa gcgattgctt taacccttgc acaacaaggg
    16081 tttgatattg tggtacattg ccgttctcgt gtggaagaag cggaagcggt ggcacaagcg
    16141 gtcagaaatc tcggaaaaaa tgccagagtg ttacagtttg atgtggcgga tcgtgaaaaa
    16201 gtgcggtcga ttttagaggc agatgtggaa caacatggtg cctattacgg cgtggtgcta
    16261 aatgcagggc ttacccgtga taacgccttt cctgctttaa ccgatgagga ttgggatagc
    16321 gtgttgcgta ccaatttaga cggtttttat aatgtcctgc acccgattat gatgccgatg
    16381 atccgtcgcc gtaaagcagg caggattgtc tgtatcacct cggtttccgg cttgatcggc
    16441 aaccgtgggc aggtcaatta cagcgcttca aaagccggca ttattggtgc ggcaaaagca
    16501 ctcgccatcg agcttgccaa acgtaaaatc acggtaaact gcgtggcgcc cggcttgatt
    16561 gataccgata ttctggacga aaacgtccca atcgaagaaa ttctcaaaat gatccccgca
    16621 ggacgaatgg gcgatcctga tgaagtggca cacgccgttg cgtttttaat ggatgaaaaa
    16681 gccacttaca tcacacgcca agtcatcgct gtgaatggtg ggttgtgtta actttaggat
    16741 aataattcgt aggggcggat ccagtacccg cccgaagcca aaaagagata aatatgaaac
    16801 gagtcgtcat caccggaatt ggtgtggtta ccgcttttgg taaagagtgg gcggaaattc
    16861 acggctatca accgccgaaa cattggaacc gcaagcagtt gcgcagcctt gggcgagtgt
    16921 cgcaatttgt ggtggaggcc agcgagcggg ctttagcaca ggccggtttg ttggacgaaa
    16981 acggcgtgat tttcgactgg ctaaaagaca ggcgaatggg cgtggcgtgt ggctcgtcca
    17041 caggctctac caatgacatc aaagatgccg ccgaattgct gatgaccggc aaatcggacg
    17101 gtttcaatgc caacacctat gtgcgaatga tgccccacac caccgctgcc aatattggca
    17161 ttttcttcgg gctgacaggg cggattatcc cgacttccag cgcttgctcc tcgggcagcc
    17221 aaggtatcgg ttacgcttac gaagccatta aatacggtat gatcccgatg atgcttgccg
    17281 gcggtggaga agaattttgt gcctccaaag tctatgtctt cgacagcctc tatgctgcca
    17341 gccgccgcaa cgacaaccca aaaggcacgc cacgccccta tgacaaagac cgagacggct
    17401 tagtgatcgg cgagggagcg ggaatgttcg tattggaaga gctggaacac gcgttagcac
    17461 gaggggcaaa cattatcgcc gaagtggtgg gctacggtgc aaacagtgac ggttcccacg
    17521 tcacccgccc acaagccacc acaatgcaac gctgtatgga acttgccctt aaagatgccg
    17581 gtattcaacc gaaccaagtc ggctatgtaa acggacacgg cacggccacc gagcagggcg
    17641 acattgccga aactcaagcc accacagcgg tgttcggcaa aattccgctc agctcgcaaa
    17701 aaagctactt agggcatacg ctcggtgcgt gtggtgcatt ggaaagctgg ttcagcattg
    17761 aaatgatgcg agacggctgg ttcgccccaa cactgaattt agaaaatgtc gatgaacgct
    17821 gtggcgactt ggattacctt caaggtgacg gacgggaaat ccacaccgat tatgtgatga
    17881 acaacaattt cgccttcggc ggtgtgaata cctcattgat ttttaaacgt tggaaataac
    17941 cgttttcaaa taatgaaaaa gatattatta gtttattact cccaaaccgg gcaactcacc
    18001 catttggcag aaaattttgt acaatcgctt gaacaagcgg gcgtttttgt ggaaaaactc
    18061 gcaatcaaac cgcaacagga atacccgttt ccgtggcggt ttatgcgttt ttttaacacc
    18121 ttccccgaaa ccgtccacct cacaccgccg ccgattgagc ctctgccctt tcagcacgaa
    18181 atatacgatt tggtgatcat cgcctattcc gtgtggtttc tctcccccag ccagccgatt
    18241 accgcttttt tacagagtga acaggcaaaa aagtgttgaa ggatacgccc gtcatcacgc
    18301 tgatcggctg tcgcaatatg tggctgatgg cgcaggaaaa agtgaaaaaa ctgcttgccg
    18361 agagtgaggc gaagctcatt ggcaacgtgg tcaaagtgga tcaatctaac gactgggcga
    18421 gttttatcac cacaccgctt tggatgctga ccggcaagaa aaaaaatcgg caagctgccg
    18481 agcgctggca ttgccgaaag cgaaatggaa gatgtaaaac gcttcggggc aaaacttttg
    18541 cacattttta gccaaaacca accgcttgac agcacccttt tccgccaaat gcaagcggtc
    18601 aaaattgacg aaaaattgat gatgagcgaa aaagtcggtg cgagaagttt ccacctttgg
    18661 ggcaaattac tgatcaagtg cggtcaaatt tcaccgcact tacgccaagc ggtactctat
    18721 ttttacatcc tctttttagt gacgttaatt ttaaccgtcg tcccgatttc aacggtgatt
    18781 aaacggctat tacgcccact gctgaaagaa aaattagaaa aacaaaaacg gtattttgcc
    18841 gagccttcgg gcgagtaaac gtaccctaca cggaaacttt atgctatcta acgtctatat
    18901 caccaacacc tccgcctttt tacccaacgc ccctgtgtcc aacgatgcaa tggaagcggt
    18961 gttgggaatg gtgggggaaa cgccttcccg agtgcggaag atgattttgc gttctaacgg
    19021 tattcaacat cgttattatg ccattgaccc gataacccgc caagcgactc acagcagtac
    19081 cgagttggcg gtgcaagcgg tcaaaaaatt gggaaattct gcaacatcag cgacttgctt
    19141 ggcggtgggg acatcttacc ccgaccaaat tatgccgggg cagggggtga tggtacacgg
    19201 cttgcttgat gccgaaccga tggaagtgct gaccactgcc ggtgtgtgcg tggcgggaat
    19261 ggcagcgatg aagcacgcct ataatgccgt acgcatcggt gagcatcgtg ctgcgattgc
    19321 aacggcttcc gaaaccgcct ccgccattat gcgcagtgaa catttccgtg ccgaaatcga
    19381 tcataaaaaa ctggacgatg ctcgccctga gatcggtttt gagaaagatt tcctgcgttg
    19441 gatgctctca gacggtgcag gggcggtatt gcttgccaat cagccgaacg aaaaagggtt
    19501 gagcctcaaa attcactgga tcgatctggt ctcttacgct aacgaaatgc cggtttgtat
    19561 gtacgccggt gcggaattta ttgacggcaa ctacaccggc tggaaagcaa tgagcgaagc
    19621 ccaacgtgcc gaatgctcgg caatggcggt gaaacaagat gtcaaactgc tcaacgaaaa
    19681 catcgtcaaa tacacggtgg aaaaagcatt ggagcggatt atcccgaaat acaagctcaa
    19741 cgctgaagag attgactact tcctgccgca ctactcgtcc ggttccttcc gagataaatt
    19801 attggaaggt ttacagcgga tcaatttcct gatcccacag gaaaaatggt tcaccaacct
    19861 gactaccaaa ggcaacactg ggtcagcctc gatctacatt atgctcgatg aatttatccg
    19921 cacccacgat ctcaaacagg gacaaaaaat cctctgctat gtgccggaaa gcggacgttt
    19981 ttcgtcttgt tttatgcttt tggaagcggt ggtaaattcg taaaatcgta gggacggggg
    20041 ctattcccgt ccaacaatca tcggaaaacg tatggacatc aatgacattc cccaagacaa
    20101 cagcaaaatc ttcaacggcg aacgcaaagt gatctacgcc cgcaatccgc aaccagaaat
    20161 ccgccaaatg atctcctcta ttctcgcttg ctacgcttgg gacgaaaaca acccgtttgt
    20221 agcgaagtct gatgcacggt tgaaggcatt ggcggaagtt gttggtaaag cagaaattgg
    20281 cgattaagtt tgattttgtg ctttacaggg tcgcagatta tctgtataat ttgcgacctt
    20341 aacttgcgag agcaagctga tggtgcttag cctatctaag ccccgtctaa gactgtaggg
    20401 gtgaaaactt aataatccta catagatggt gaacagacag aattctctgc ttctggacac
    20461 cttaggctca aagaagattg cagtttgtag caatgcaagc ggtaatattt ttgggatttt
    20521 ttgtaaattc tgcttgaaaa ggcagagtgt atcaggagct aaaaccaatg gcattaaatc
    20581 ttcaagacaa acaagcgatt gttgctgaag taaacgaagc tgccaaaggt gcactttcag
    20641 ctgttgttgc ggattctcgc ggtgtaacag ttgaaaaaat gactgagtta cgtaaagcag
    20701 ctcgtgaagc tggtgtgaca atgcaagttg tacgtaatac tttattacgt cgtgcagtgg
    20761 aaggcaccga gttcgagtgc ttaacagata cgtttaccgg tccaactctt atcgcattct
    20821 caaatgaaca cccaggtgca gcagcacgtt tattcactga atttgcgaaa acaaacaaag
    20881 agtttgaact taaaggtgca gcctttgaag gtaaaaaaca agatgttgca ttcttagcaa
    20941 ccttaccaac ttacgaagaa gcaattgcac gtttaatggg cacaatgaaa gaagctgcgg
    21001 caggcaaact tgttcgcact cttgcagcat tacgcgatca aatggaagca gcagcttaat
    21061 tttaagcact cttctttatt cgtttaacaa cttattttac tttaggaatc gattgttatg
    21121 tcattaacta acgaacaaat cattgaagcg attgcttcta aatcagtatc agaaatcgtt
    21181 gaattaatca ctgcgatgga agaaaaattc ggtgtttcag cagcggcagc agtagcagca
    21241 gctccagcag caggcgcagc ggcagcagaa gagaaaactg agtttgatgt agtattagca
    21301 gaagctggtg caaacaaagt tgctgtaatc aaagcagtac gtggtgcaac aggtttaggc
    21361 ttaaaagaag ctaaagactt agtagaatca gctccagctg cattaaaaga aggcatctct
    21421 aaagcagaag ctgaagcact taagaaagaa ttagaagaag ctggcgcgaa agtagaaatc
    21481 aaataatttt tgatttattt tgtcagaact tcaagttcaa caaaccccga tggaaacatc
    21541 ggggttttgt tttttcagaa ttgtgtaatg tagatatgat tacctttatc cattacttgc
    21601 gcagcagtga aaaatgtaaa aattccacaa agtgatctgc ccagtgcatt tcgtggtgga
    21661 tttcatttgc cataatccgc aggcggatat tgtctaacgg cacgccaatc cgaatcagtg
    21721 cttggtagta attgagcgaa caatcaatat aggtttggtt cgtattagag ataaagtgcg
    21781 aatcgatttc atcgccttcg ttagtgccaa cctgaataaa cactttggta ttgggttgta
    21841 acggatattg gtgcgtaaaa cgcagaaaat ccggctcact aaaccaagag gcaagcgaaa
    21901 acacccctaa atgcccgaaa atatgtgggt agcggctgcc catataagcg gtgataatgc
    21961 cacccattga actgcctgcc aataaggtat gttcttgctg aggcttggtg cgatagtgaa
    22021 tatcaataaa gggtttaacc gtttccacca cccatttggc atattcctcc cctaagcctc
    22081 cggcatttcg ggtttcaggg gttgagccgg tggttgtttt ccacgggccg tattcattta
    22141 agcgattagc tcctgcgtta tcaatgccga caataatcat cttcggtaat tcttggtgtg
    22201 atttaatggt tggaataatt ttccaagaat gccccgaata agactctttg ctgtaaaaca
    22261 cattttgccc gtcgtgcata tataacaccg gataacgttc ccaaccttcg ttgtgataat
    22321 ccttcggcaa tagtacccga atgcggcggt gatggtgtaa atagggaaca tataaaaaat
    22381 gctcctgcat ttctaaatag tggttaagtg gtttttgtac catcagtctg tccttttgct
    22441 taaattgtgg cgtattttac accttaatca gtctgagtta aaacaagcgg tcagaaaaag
    22501 tcaaaaattt gcaaattgct gttacctaac gcaatcggtt gccttatgct tttgaggaat
    22561 ataaaagaga aactgtgatc taagtcacag caatttttat tcggtttgac taaaatccga
    22621 actatcactt aatagagagg aaaatgttat gcaggcttca ttacaagata ttcttgaggt
    22681 agtaaaagca aaaaatctca cttatcagca aaaattgatg agtttaggca atattgctga
    22741 gcggttattt aacccgattg aactacttgg ctacactgaa gaagagtggg aacacattga
    22801 aaatcagatg atttgcgatt taaatgaagg ttatgcgatt tatcgcccac gttatatttt
    22861 gcctgattat aatgtgtata tgcaaaaagg ttgccaattc ttagatttac ctccgccaac
    22921 caatttagat gaagccttag acggcttgtt aattctgtat tcacacgttc cgtccattac
    22981 tacttttccg gtgtatatcg ggcgtttaga ccaactgtta gaaccgttta taaccgatga
    23041 agagcaagat tacattaaaa tcaagcgttt cttaaatcat atcgataaaa ccatttccga
    23101 ttctttctgc cacgctaaca tcgggccgaa tgacaccaaa gccggtcgtt taatcttaaa
    23161 agcggtgatt gagcttgaaa acattacacc gaatatgacg attcgttatg ataaaaccaa
    23221 aacatcgcgt gaatttgccg aactggcggc gaaagcgtgc ttgttggtgt ccaaaccgtc
    23281 ttttgctaat gatgcctact acattcaaga tttaggcgaa gaatacggaa ttgcaagctg
    23341 ttataacgcc ttaccggaat gtggcggtgc ttacactctg acccgcctgc gtttaggtac
    23401 tatcgggcgt gcttgtgcga gtgttgaaca aatggtcaat gagatgctgc cgaaagtggc
    23461 aaaactcgcc ctttccacga tggataaacg gcataaattc ttggtggaag aaagcaattt
    23521 ctttgaaagt agcttcttgg ttcaggaggg ctttatcaaa cgtactaact tcacaagtat
    23581 gattgcgatt gtaggtcttg ctgatgcggt gaatcattta ctcaagcaag aaggtttaaa
    23641 tgaaaccttt gggcaaagca aacgtggcga tgaaattgcg acgctgatta tggataagct
    23701 ccaagcagta aatgacgctc ataaagggct gtatgttgaa cgaaccaata accaatatct
    23761 gttacacgct caagtggggg caaataacca cgctgaagac aaaatgaaca cgccggcaca
    23821 ccgcattcgt gtgggcgaag agccaacctt attggcacac ttaaaacagt ctgctccttt
    23881 ccataaatat ttcccatccg gtacggggga tttattcgcc tttgaccaaa cctacactga
    23941 tcatttagat gcggtggtgg atattattga cggctcgttc gcccaaggtt atcgctacat
    24001 taccacttac ctgaaaaata ctgatttgat tcgagtgaca ggctacttgg tgaaaaaaag
    24061 cgaggttgaa cgttatcgca aaggcgaagc ggtattgcgt gataccactt ggtatggttc
    24121 aggcaccgat gattgtgcga aagtgttcga ccgccagctg cgtgatgaag aaaatgtgaa
    24181 tgcagggtaa caatggctgc actttctgag atttttgtgc cgttacaccg cattatcccc
    24241 ttctcgaatg tagaagggca gggcaatcgt accagcattt ttctacaagg ttgcaagctg
    24301 aattgcctgt attgccataa cccggaaacc attccacgtt atagcaagga agcaaaacag
    24361 gttagcttgc aatacttgta cgatcaagtg atggaggcag ttccctttat tcgaggagtc
    24421 actatttcgg gtggagagcc aaccattcat cataaaaaat tagtgccact gttcgaggcg
    24481 ttgcgtgagc aagggctaac ctgttattta gacagcagcg gcttttttga ttttgaggca
    24541 acagagccgt taattaatgt taccgataaa tttctgttcg atctcaaagg agatggggcg
    24601 ggcttacaaa cgctatgctt tgatcggaaa aaccaagccg gcaaagtgcc tgaacaggct
    24661 cttccaaacg tgaatcatat taaacctgaa aacttggctc gcaatttgca aaatttagcc
    24721 aaattattac cgcttgataa ggtggaagaa gtacgtttgg tttacctcaa tgagttttat
    24781 aacgcccacc atttgctcga aaaagtggct gacctactta aaccttaccc agatgtacta
    24841 cttaaaatta ttcgggtaca caccaaagga gcgagagatg aaacaggctt ggctcgtttt
    24901 gtacccacta tcgagcaaac cgatgaactg gcagcatttg caaaacggca cggtattcaa
    24961 aaagttatta ctatttacta atggagactt acgatggata tactaattag cataattggt
    25021 gtttttgtgt tattaggctt aggtgtttta ttatcaaata atcgcaaagc cattaaattt
    25081 cgcacaattt tgggcgcttt ggcgattcaa attggttttg ccgctcttat tctttacttt
    25141 ccagcgggaa gaaatgcatt gctagctact gcaaattgtg tgagcaatat tattaattat
    25201 ggtaacgaag gtattagctt tgtgtttggc aatttagcga atccgagtaa tagcagcatt
    25261 ggttttgtgt ttgcggttaa agtattgcct attattatct tcttctctgc gttaatttca
    25321 atgctttact accttggtgt gatgcaatgg gtgattaaaa ttattggtgg agcattacaa
    25381 aaaacactag gcacttccaa ggcagaatca atgtcagcgg cagctaatta tttttgttgg
    25441 tcagacagaa gctcctctag ttgtaaaacc atacattagc cgtatgacag agtcagaatt
    25501 atttgccatt atggttggtg gaactgcttc aattgctggt tccgttatgg ctggttatgc
    25561 cggaatgggc gttcctttaa cttatcttat tgcggcctcc tttatggctg caccagctgg
    25621 gttactattt gctaaattaa tgtatcctca aacggaaacc ttggagagta aagcagatga
    25681 caatgttgaa gttgaaaagc caaataacgt ggttgaggcc ctagctaatg gtgctagtgc
    25741 aggtgttact ttggctatta atgtcggtgc tatgttaata gcatttattg cagtgatcgc
    25801 tttattaaat ggctttattg gtggcattgg taattggttt ggttatgagg ggctaacctt
    25861 acaaatttta ttaggttatt tattccaacc acttgctttc ttaatcggtg tgccgtggca
    25921 agatgccgat attgcaggtc aaatgatagg tatgaaactt gctgttaatg aatttgtcgg
    25981 atatcttgag tttgctaaat atctacagcc tgatgctgtg gtgcaattaa gcgataaaac
    26041 taaggcaata attacttttg ctttatgtgg ttttgcaaac tttagagcaa ttgcggtatt
    26101 gattagtggt atcggaagta tggcaccaag tcggcgttca gatattgctc gtttaggttt
    26161 aaaagcagtg attggcggca cattggcgaa cttaatgagt gcaactatag cgggtttctt
    26221 tattggttta agtggtgcca cattaggttg atacaagcgg ttaaattgac tcactttttt
    26281 gcaaaaagcc caagtaagtt aaatgactac ttgggctttg tttaatgaac tagctcttag
    26341 tttcggtttt tgctgtgtta tccttttccg ctttggctgt ctgtgttttc gaagttgtct
    26401 gtttttttgc ggattggcta gcagtagctg cttttcttac tttctttgtt ttaacttcta
    26461 cttccgcatt tttagagttt ttatccgcta accatgcctg cactttagct aagaatattt
    26521 gtcccatcgg gcgaggatcg ccagaaaata atgtttgtaa tttattattt tcaataatgt
    26581 cgcgtctaat tgctaagcgt tcttcgtggt tttccgctaa acgaatagct tgagtaacgt
    26641 attcctctgc tgtttgggta attaaccaat taggtagccc gaggcgctta aataaacctt
    26701 catcaatatg ttcatgaact tcagggcctg ttttacagac accaactaaa ccaagcgtaa
    26761 ccatatcgat aatgccgttt gtatttccaa atgggaatgg atttagcatc atatcgcaat
    26821 tatgtagaat atttagatat tcatcatatg gcgaatgtgg gtgtgcggtt gcatcatttc
    26881 ctaaatagct tttgataaaa cgttccacat aaggatgcgt aattccacta gattgcccta
    26941 atgcaaaatg gaaatgagtt tttaccttcg ccctatcacg aatggctttt aatgcctcta
    27001 agaaatatgg gtttaatttc atagtggttg atgcaattcc gatatggata acctctggat
    27061 tttcacgtag gttatagacc acattttgag gcgctaatgc ggaaggcaca tagggtagcg
    27121 catcttttgg aagacgtaat aattgttcac taaagcagct ttcggaacca acatagtcat
    27181 cttctacgat gacatattca ataaaatcag agtgtgtagt tgccggatga cctagcgcaa
    27241 cagcttgaat tggtgctagg cgagtgttac tagcgaaaat agtggttaaa tccattccaa
    27301 tgctaggcat atagaatacg gctggattat ttttatcaca gatatctttt aaaaagctta
    27361 agcggtcaaa tagtgagcca tcttgtggta ataaatgaaa ttcgtcgaat acctgttgcc
    27421 ccatttcatc tacagcatca ctgcctagcc caataagatg gaaatgttcg cgtgcagcaa
    27481 ccattgaggt tgaatgagta cgataaatag aatgtgatga atggaaatgc tccaataata
    27541 ctaccatgac aggtttatta tttctggtac caagctgttc aatttttcta tcttcccaac
    27601 cgacagaaag taaatgacga cgaattacag catttaacga ccgttttaca ttatgtttat
    27661 ttgcttcaat atcataactg caatgcatat aaacatcgtg tgaaatggcg ctcggtagct
    27721 tgttcaagtt ttcaatttgc gctaattttt ctgggaacca ttgcaaaata gccgcgcgtt
    27781 ttgcaaaagc agaggatgta ccaataaatc taggtgattg gagtgcaaaa caaagtgatg
    27841 cggtgagatc tgatgaagca ttccatgcag catctagatt caataaaata ttagattccg
    27901 gtaagtataa aatacagaac ttaattagtg cttgtaatgt ggcatctaaa tcaaccgtat
    27961 ttggattagc agattcttta tttctattgt aagtacgcaa gatatggtct gcgtttacgt
    28021 atggagaact ggcaaaaatt aatgctatcc agcgttgtaa tgtcagaaaa cgcatagcac
    28081 cgtgttcgga gatctctaat gcaggatctt caaacaagcg agtaatcgct accgccattc
    28141 gagtacagaa atagatagct ttatcatttt ctaaattttc aatctgctct ggcatattca
    28201 attcaatatt ggaaatgcca ccaaaattac tatctaattt tgaaaggata gacagtagct
    28261 cggtacaagc cgattcataa tcttttttcg cgaccgcctg ctcaaaacgg atgacgctag
    28321 gcatattttc tgctgacata atgtatcctt agttgtttaa aattccccac agatcatact
    28381 catctgcatg tgtaatggtt actgaaataa tttgccctac tgtcactaat tggtttgaag
    28441 gattatctac atagactaca ccgtcaattt ccggtgcatc tgccattgag cgaccgataa
    28501 tgccttcttc gtcaatgtca tcaataatta cttgtacggt tttgccgatt tttgcttgta
    28561 agcgagcagc ggaaatttct tgttgtagtt gcataaaacg gtggaaacgt tcctctttta
    28621 cttcttccgg aacttgatcc ggcatatcgg tagcaacagc accttccact gggctgaatt
    28681 taaagcaacc aacacgatct aattgtgctt cttttaagaa atcgagtaat agttggaaat
    28741 cttcttctgt ttcccccggg aagccgacaa taaaggtaga acgcagagtt aattcagggc
    28801 aaatttcacg ccatttttta atgcgttcta aggttctttc gattgaaccc gggcgtttca
    28861 tcgcttttaa gattttcggg ctggcgtgtt ggagtggaat atccaaatac ggcaaaattt
    28921 tgccggcagc cataagcgga attaaatcat ctacgtgtgg gtatgggtaa acatagtgca
    28981 aacgcaccca cacgcccatt gagcctaatt gctcacatag cgtaattaaa ttacttttaa
    29041 tcggcatacc gttccagaaa acggttttgg ttgcttcttc ttttttgcga tctaacgaat
    29101 aggctgaggt gtcttgtgag acgattaaca gctcttttac cccggcatca actaggcgtt
    29161 ttgcttcatc taatacttgc acgatagaac ggcttgctaa atcgccacgc attgaaggaa
    29221 taatgcagaa agtgcagcga tgatcgcagc cttcggaaat tttcaaataa gcgtaatgct
    29281 tcggtgttaa tttaatccct tgttttggca ctaagctggt gtaagggtta aattccggtt
    29341 ttggcacata tttatggacg tggttcatta ccgcctcata gctatgtggc cctgtaattt
    29401 ccaatacttt agggtgtacc tcacgaattt ggttttcttt tgcccctaaa cagccggtga
    29461 caattacttt tccgttagct tctaacgctt caccaatgct ttcaagagat tcttgtactg
    29521 cggaatcaat aaaaccgcag gtgtttacaa tcacaagatc cgcattttca taactaggga
    29581 tgatgttata accatccgca cgcagttcgg tcaaaatacg ttcggaatca actaaatttt
    29641 tagggcagcc taagctgata aaaccaatat ttggtgaagc actcatataa ctctcaataa
    29701 ctaaaaagaa aaatgcctac aatttttgtc tgtaggcaaa aaactaacaa gattctacaa
    29761 aatcttgccc aaaatagcga taacaagcgg tcaattttta ataaacattt acaaacttga
    29821 aatttcgcta acaattaaaa ttaatcgata ttatttagca ttgctaatac aatcgtggaa
    29881 gatttttctg cggctaatgg cagaaattct tcaaaagaaa ggtgggattc tttgtccgct
    29941 acatccgata ctgctcttac gattacaaat ggaaggttaa aaccgtgaca aacctgcgca
    30001 atggctgctg cttccatttc gactgcaacg acattcggga aattctgacg aatttgatta
    30061 atcttatcat taccgttaat aaaggcatcg ccgctacaga ttaagcctga aaccacattg
    30121 taaccggctt ttttcgcttc cttttgagct aattcgacta attgctcgtt tggcgaaaat
    30181 gttggcgggt ttgccggtag ttgcccgatt tcataaccaa aggcggtcac atcaacatcg
    30241 tgataacgaa cttcggttga aatcaaaata tcacctacgt ttaaatctgg atctaatcca
    30301 ccggcagagc ctgtattaat aatcatatcc ggctgggtga gctgtatcag taaggtagtg
    30361 ccgatggcgg cagcaacttt gccgataccc gattgtaata atgccacacg ggtattgtta
    30421 attttgcctt caaaaatttt acaacctgct aattcagtga ctttaggttc aaccattact
    30481 tggcgtaaaa tctcaatttc ttgtgccatc gcaccaataa taccaatttt cattactttc
    30541 cttctctaat gtattgttta ttttttgaaa aaaacgctat tttaacagca ttaatagtga
    30601 ggagggggtg tttcttctgc ttgtgaagca acttggctta gttgagcccc tttcaatttc
    30661 tcagcaatat ggcgaatctg agtttgtaac ttatcaattg caaattgttg ctcaataagt
    30721 gcttgattta actcttcaat aatcagctct tggaaagcaa ctttagtctc caattcggta
    30781 atttttgccg ataatgtata attattatcc attttttac
//
LOCUS       DANMGB010000007        29986 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.007, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000007 DANMGB010000000
VERSION     DANMGB010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29986
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.007"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(53..127)
                     /locus_tag="PXG19_000255"
     tRNA            complement(53..127)
                     /locus_tag="PXG19_000255"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(93..95),aa:Gln,seq:ttg)
     gene            complement(153..237)
                     /locus_tag="PXG19_000256"
     tRNA            complement(153..237)
                     /locus_tag="PXG19_000256"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(201..203),aa:Leu,seq:tag)
     gene            complement(240..316)
                     /locus_tag="PXG19_000257"
     tRNA            complement(240..316)
                     /locus_tag="PXG19_000257"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(280..282),aa:Met,seq:cat)
     gene            complement(483..1307)
                     /gene="aroE"
                     /locus_tag="PXG19_000258"
     CDS             complement(483..1307)
                     /gene="aroE"
                     /locus_tag="PXG19_000258"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL6065596.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(1314..1868)
                     /locus_tag="PXG19_000259"
     CDS             complement(1314..1868)
                     /locus_tag="PXG19_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL6065597.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(1861..2397)
                     /locus_tag="PXG19_000260"
     CDS             complement(1861..2397)
                     /locus_tag="PXG19_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL6065598.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(2407..2718)
                     /locus_tag="PXG19_000261"
     CDS             complement(2407..2718)
                     /locus_tag="PXG19_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL6065599.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(2711..3187)
                     /gene="recX"
                     /locus_tag="PXG19_000262"
     CDS             complement(2711..3187)
                     /gene="recX"
                     /locus_tag="PXG19_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL6065600.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(3246..4352)
                     /gene="recA"
                     /locus_tag="PXG19_000263"
     CDS             complement(3246..4352)
                     /gene="recA"
                     /locus_tag="PXG19_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL6065601.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(4453..5073)
                     /locus_tag="PXG19_000264"
     CDS             complement(4453..5073)
                     /locus_tag="PXG19_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL6065602.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(5051..6025)
                     /locus_tag="PXG19_000265"
     CDS             complement(5051..6025)
                     /locus_tag="PXG19_000265"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL6065603.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            6135..7742
                     /gene="rmuC"
                     /locus_tag="PXG19_000266"
     CDS             6135..7742
                     /gene="rmuC"
                     /locus_tag="PXG19_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL6065604.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            7805..8389
                     /locus_tag="PXG19_000267"
     CDS             7805..8389
                     /locus_tag="PXG19_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL6065605.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            8486..9568
                     /gene="prfA"
                     /locus_tag="PXG19_000268"
     CDS             8486..9568
                     /gene="prfA"
                     /locus_tag="PXG19_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL6065606.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            9680..10282
                     /locus_tag="PXG19_000269"
     CDS             9680..10282
                     /locus_tag="PXG19_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065607.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILSDQKNTENSKIILDILK
                     FGHSRMAIQQNMGDKVYSGGCVTADKAEEYLDILKNRNSK"
     gene            10282..11148
                     /gene="prmC"
                     /locus_tag="PXG19_000270"
     CDS             10282..11148
                     /gene="prmC"
                     /locus_tag="PXG19_000270"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6065608.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            11157..12023
                     /locus_tag="PXG19_000271"
     CDS             11157..12023
                     /locus_tag="PXG19_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL6065609.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            12113..12967
                     /gene="kdsA"
                     /locus_tag="PXG19_000272"
     CDS             12113..12967
                     /gene="kdsA"
                     /locus_tag="PXG19_000272"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL6065610.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            13188..14135
                     /locus_tag="PXG19_000273"
     CDS             13188..14135
                     /locus_tag="PXG19_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL6065611.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            14233..15405
                     /locus_tag="PXG19_000274"
     CDS             14233..15405
                     /locus_tag="PXG19_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL6065612.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            15422..16105
                     /gene="lolD"
                     /locus_tag="PXG19_000275"
     CDS             15422..16105
                     /gene="lolD"
                     /locus_tag="PXG19_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL6065613.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            16102..17367
                     /gene="lolE"
                     /locus_tag="PXG19_000276"
     CDS             16102..17367
                     /gene="lolE"
                     /locus_tag="PXG19_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL6065614.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(17442..19373)
                     /gene="thrS"
                     /locus_tag="PXG19_000277"
     CDS             complement(17442..19373)
                     /gene="thrS"
                     /locus_tag="PXG19_000277"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL6065615.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(19540..20889)
                     /locus_tag="PXG19_000278"
     CDS             complement(19540..20889)
                     /locus_tag="PXG19_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6065616.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLMISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(21164..21655)
                     /locus_tag="PXG19_000279"
     CDS             complement(21164..21655)
                     /locus_tag="PXG19_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL6065617.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            21736..22503
                     /locus_tag="PXG19_000280"
     CDS             21736..22503
                     /locus_tag="PXG19_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL6065618.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(22494..23288)
                     /locus_tag="PXG19_000281"
     CDS             complement(22494..23288)
                     /locus_tag="PXG19_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL6065619.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(23349..24935)
                     /locus_tag="PXG19_000282"
     CDS             complement(23349..24935)
                     /locus_tag="PXG19_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL6065620.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(25121..26974)
                     /gene="dxs"
                     /locus_tag="PXG19_000283"
     CDS             complement(25121..26974)
                     /gene="dxs"
                     /locus_tag="PXG19_000283"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL6065621.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(27019..27831)
                     /gene="suhB"
                     /locus_tag="PXG19_000284"
     CDS             complement(27019..27831)
                     /gene="suhB"
                     /locus_tag="PXG19_000284"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL6065622.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            28012..29046
                     /locus_tag="PXG19_000285"
     CDS             28012..29046
                     /locus_tag="PXG19_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL6065623.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            29056..29940
                     /locus_tag="PXG19_000286"
     CDS             29056..29940
                     /locus_tag="PXG19_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL6065624.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
BASE COUNT         9011 a         6107 c         6336 g         8532 t
ORIGIN      
        1 agaaaaaact aacttacgtt agcttatata gatttgaatg tttgaaatta agtggctggg
       61 gtactaggat tcgaacctag ggatgccgag atcaaaaccc ggtgccttac cgcttggcga
      121 taccccaaca ctaatttttg ttaatcgata aatggtgcgg gacgagggac ttgaacccac
      181 acacctcgcg gcgccagaac ctaaatctgg tgcgtctacc aatttcgcca gtcccgcaat
      241 ggtggctaca gcgagattcg aacttgcgac cccaacatta tgagtgttgt gctctaacca
      301 gctgagctat gtagccattt gcgttcacca tatcggtcaa cggagtgcat tatgctgatt
      361 ttagggcttt ccgtcaaata ctttttttaa aaaatttgaa tttttgattc gcttgtatag
      421 ttattcgtcg ttttggctta aatctagcat tttttgttta taaaataata gcttatattc
      481 tgctatttca ccgtttgcat ttctaatttt aattgagcca gtacaggctc aacatcgggg
      541 aattgccctt cccacaaaga aaacgcaaac gctgcctgtc caaccaacat tcctaatccg
      601 tcttggcacg ctgttgctcc acaacgcctt gcataattga gaaaaggagt ttgcatattg
      661 ggggcatatt gcatatcgta aatattcgcc gatgctataa cagattcagg caattcaaca
      721 tatttgcctt gcagaccgag agaggtggca ttgacgatta aattaaacag ttggtttgcc
      781 aaatcgctta aacaagcggt ctgaattttg ccaaattttg caaatttttc ggctaaaacg
      841 accgctttct cctgcgtgcg gttatataga gtaatctcta accccgcttt aagtaacgga
      901 agtaatacgc ctttggttgc tccacctgct ccaagaatta aggttttatg ccctttttgt
      961 aaccaaccta gccgttccaa atcagaaact aaaccggccc cgtcggtatt atcggcatat
     1021 aaccgtccat cttctaagcg tttaagcgta ttacacgcct gtgccaacaa agcggtttcg
     1081 ctaaattcat ctgccaattt aaaggctctt tctttaaaag gggcggtgat gttgcaacct
     1141 tttgctccag aagcgaaaaa atcggctaat tgttgctcaa aagccgtttc atctcctaag
     1201 ttagcgatat attcaatgtt gcgttgggtt tgtaaagcaa agagttgatg aatacggggg
     1261 gatttacttt gagcaatcgg gttgccccac acggcatatc ggttcatttc ggcttatcct
     1321 tgtctaaaaa tctgttggct gaaaatatct cgaatttcgg aagggttttc tctacctagc
     1381 gtgtctgcgt gtaatacagg aaaatcttga ccaaactgat cgatgacttc ttttgcattg
     1441 cggcaaggtg gttctccgct caaattggca ctggtagagg tcaacgcaac gccgcttgcc
     1501 tcacacaact gaaccaccgc cggcacatta cataaacgta cggcaataga atcaaatttg
     1561 ccggtgaggt aacttggcac agtattttta accggtacga tccaagtaat tgcctgctcg
     1621 ccaatatggc ttaggcgttg ccaagcctgt tccgtcattc gagcttcatc aatataggga
     1681 agaagatact ttaaatcaga agccagtaaa attagccctt tttcctcagg gcgttgtttt
     1741 aatacgagta atttccttac cgctttttca ctttgtggat tgcagcctaa gccaaaaacc
     1801 gcttcggttg ggtaagctac aacttcttct tgctttaatt gattaactat ttctaaaaaa
     1861 ttattcattc ggttttaatt ctgtttggtg ctggcaactt ttgttagcac aaatggtgaa
     1921 ttgcttgccc ttaatttttt tgattgtagc gagttcacaa ccacattttt cacacaagtg
     1981 gttaatcggt cgagttgcta atgtaaattt gcaattaggg aagcctatac aaccataaaa
     2041 tattttgcct gaacgccctt ttctagcaat cagtttatgt tgcttgcatt cagggcaatc
     2101 aaactcttct tcaacctcag cttcttcgtg tacgatgaag tggcattcag ggtaatggct
     2161 acagccgata aaaataccat aattgccttg ttttaattgg aggtttccgc cacattcagg
     2221 gcaaagttca tctaattgct taataatatg accggcttga tgtaatggct taatataatc
     2281 acattcaggg taagctgaac aacccaaaaa taaccctttt ttgccctgct taatttgcaa
     2341 cggcgagcca cattgtgggc aagtttcggt ctgtttggtt gatttgaaaa gtaccatatt
     2401 gatttgctaa ataagcgtaa attcaatcac aaaaaacgca ttgtcattcg gataaatctc
     2461 ccgaataact tgtttcaatt cggctaagct catattttct tgtttagcgt gttgctcgtt
     2521 taattcatca aacactatag gtgttaccga tagcacttta atattggcga aaaatctatc
     2581 ggtttcatta gtaaaaaccg ctaattcttg gtttggttga aaataagatt ctgacttgtc
     2641 tcgaatcgta attgtttttt taccgcttaa aatatcggct tcaaatcggc tgaaaaaggt
     2701 aattttctct ctattcatat tcatcgctac tgtaatccag agccattaaa tgactaaaat
     2761 gatcgttata aaaaccacgg ctaaccataa atcgccacat tttctgcttt gctttcagat
     2821 cccatacaag cggtcgtttt ttctcaaaaa tttgctcagc taattcaaac caatccactt
     2881 cggcgttttc taattcttgg ttaattaacc aatcttttac ccctttaagt tttagctctt
     2941 gctttaaacg gcgaggccca atgccttgca ttgaacgata acggataaaa gtggtacaaa
     3001 agcgttcatc actttgccac tgattcgctt gagctttttc aatcgctgca tcaatctccg
     3061 tgagttcata ctctttttgc tttagttttt gccgaagctc ttgctcgctg taatcacgct
     3121 ttgaaagtaa atatagcaga taattaaccg ctgtgtattt atttgtttta gtagtagatg
     3181 ttgtcattta tcggttataa ataaaaatgc gattttcacg ttgagcgaaa accgcataaa
     3241 tttaattaga gttcttcttc actaaattca tcatctgcat tgtctgcatt ttcagaatct
     3301 ggagtagccg taaaagttgg gtttgaaatg agtagatttc gaatatcttg ctcaatttta
     3361 ctcgccactt cagggtgttc ttttaaccat ttgatggcat tatttttacc ctgaccgatt
     3421 ttctcccctt cataagagaa ccaagcccct gctttattaa tgaagccgtg agattccgct
     3481 aaaatgagta attcattcat acgggcaatg ccctcaccgt acataatatc aaattggact
     3541 tcacggaacg gtggagcaac cttgtttttc acaattttca cttttgtttc gctaccgata
     3601 acctcatcac cgtcttttac tacgcctgaa cgacgaatat ctaaacgtac tgaagcatag
     3661 aatttaaggg cattaccacc agttgtggtt tcagggttac cgaacattac tccaattttc
     3721 atacgaattt ggttaatgaa aatcaccaag cagttggtcg ctttgatatt tgcggttaat
     3781 ttacgcaatg cttgtgacat taaacgagct tgtaagccca tatgggaatc acccatatcg
     3841 ccttcaatct ctgcttttgg tgtaagtgcc gcaacagagt ccacaataat tacatcaacc
     3901 gcaccggaac gaactaacgc atcacaaatt tctaatgctt gttcgccatt atccggttgt
     3961 gaaattaata atccatctgt atctacccct aacttacggg cgtaaatagg atcaagtgcg
     4021 tgttcggcat caataaaggc acaagtttta ccattttttt gggcttgagc caccacagat
     4081 aaagttaatg tagttttacc tgaagactcc ggtccataaa tttccacaat acgacccatt
     4141 ggtaaaccac caatgcctaa tgctgagtct aaaccaagag aaccggttga aactgcttca
     4201 atatcaaggg cttgagtatc gcctaacttc ataattgagc ctttgccaaa ttgcttttca
     4261 atttgagcta atgcggctgc caacgctttt tctttttgtt ccggatcaat ctgtttaacc
     4321 ggagtgttct tttgactttt tttctctgcc atattctatc ctttgtaaac ttttatctaa
     4381 aagcaaccgc ttgttgctgc aaaataactg tatattatta tagtatttac ttatccagtt
     4441 gcaagcattt ttttaggatt ttcgatcaag atcacaaaaa taaatttgcg agcaaggcaa
     4501 tgcccttggt tcctcaaagg gattaagagc attaatcaac ataatttttt catattgatg
     4561 caaatcttgc ttggctattt tggctaaaac gactttccct tcatcaagca atttactaag
     4621 ctgagtgcct ttgagcaaat aatgttgcgg gctataccag attccttgtt ttaggaacag
     4681 taaattgccg atggagcaat cactgacgta gccattattg agaataatca cctcttcatt
     4741 ttgtaaaata gggagcaaat caaaccgctt gcggtcgcta aatttgaggt gataatccca
     4801 attttccacc tcaaccaagc gaaaacgttc tacttttttg ggcgaataga taaaaaattt
     4861 cagctcaaat tctgttgcgt tgtaatctat tcggcaacgt actttgcccc gttgagaagc
     4921 ctctggcaca actaaaatat cagcaaggct aaaacgaggt tcacagccaa aatattcttg
     4981 tgttgcttgc tcaaaacgtt gttgatgata ctgtaagttc tgaactttgc cgtcaataat
     5041 cgaaagggtt tcaaatagcg gaaatcggca catagacttt ctctaacagt tcattatatt
     5101 catcagttaa cacactttgt gaggtaatgc caccaccact atgaaacaca agcccgtttg
     5161 aggtttgagc aatgtaacga attgccaccg cactttctaa gctctcgcca tcaaaataac
     5221 caaaaatacc ggtgtagtaa ccccgttttc ctaattctgc ttgctgaata atcgaaaccg
     5281 ttttctcttt cggtgcaccg ctaatggagc cggcaggtag taattttgcc aatatcgaac
     5341 cgatattttc ttgccaattt tcacctaatt cgccacagat ctcggaactt gtctgcaaaa
     5401 ttgcccctcg atgggtttct actttttcca cataacggta tttagtaact tcaatatttt
     5461 tcgccaccaa cgccaagtca tttcggatca aatccacaat ggtattatgt tcggtaaact
     5521 ctttttccga agccattaat ttctgctcgg cattctcctc atttgcatta attgtgcctt
     5581 tcatcgggta ggaaaaaatg cggttatttt caattcgcac aaagcattca ggggaaaaac
     5641 agacgaacct gccttgcaaa taacatttat attttgcttt gctggcggca aaaatttccg
     5701 ccaatgaata attggtttca atggcagtcg ggtagctcaa attcagcaag tagctattgc
     5761 cggcttgaat ttcctttttc actaattcaa acccggtttg gtattcgcta aacggaatcg
     5821 gatttgccga taattcaaaa gctttagtcg gtttttcaac cggcttttcg agattcgatt
     5881 tgcaaaaaaa ttcaaaaaaa agaccgcttg cgtgagcctg ttctagcgga aaaataagtg
     5941 gcttttgctg ctcaaaatca attaaaaaga aaaaagggcg ttttgcttgc ccgtagtgat
     6001 tggcttggtg aataaaatct tgcatagaaa acacaatggc tgaaattggc tgaatcatca
     6061 aaagctctgt tataatgcaa agcaatagat ttgaaaagca ttttttaaaa aaggttttac
     6121 cgatgaacaa caccattcat tttcaagaaa ttgggatcta catcgccctt gccgtttgtg
     6181 tgctggtagg cgtttatctc tttttcttga aatcccgtta tcagcgaaat gcctacgaat
     6241 taagccaaga tcttggcaaa atcaccgaaa attttgaaca aattcagcaa aaatatgagg
     6301 tgttggctca agaaaaaaat cagcttgagc agtgggcaat tcaacaacag accaaatatg
     6361 aagcagtgag tgaacgttta aacgagcgag atgggcaatt gcaacgattc caacaaaaaa
     6421 tcgaacttgc cgaacagcaa gaaaaccagc tggaacgcta tattaatgag ctaaaagaac
     6481 gtgtgggttc ttcccaagca aaggcagaaa gtttggaaga acagctacaa tttagccaaa
     6541 gttcactctc aactaaagag cgggaaaatc aagcgttatt tagccgttta aacgaggtac
     6601 aaaacgagct gaccgaactg cgtactacgc tttcggaaaa acaggcaaat tttgaagcac
     6661 aacaacgcaa ttttattgag gtaaaacaac agcttaatgt ggaatttcaa catttggcac
     6721 aacaaattct tgacgaaaaa agcaagcgtt ttagcgaaac caatcaaagc tcgttagaag
     6781 ctctactgaa gccgttcaaa gagcaaattg aaggctttca aaaacgggtg aatgaggtac
     6841 atagtgagtc gctcaaaggc tcggcaaatt tagaggctga aattaagcgg gtgctacaaa
     6901 ttggcgtttc aatgtcggaa gaggcacaaa atctggcaac ggcattaaaa ggcaataata
     6961 aaattgccgg caactggggt gaagtacagc ttgaaagtgc cttacaatct gccggtttac
     7021 tcgcaggcga gcattaccaa gcccaagaga gttttcgtga tgaagagggg cgacgttttg
     7081 cccccgattt tgtggtgcat ttgccggatc aaaaacatct gattattgac agtaaagtct
     7141 cgttagtagc gtacgatcaa gcggtcagat cagaagaaaa ttttgcaatt tctcaagcct
     7201 tagacgaaca ttgccgttcg ctacgcaatc atattgaggg attgtctaag aagaactaca
     7261 gtgcattatt aggcattaaa agcccggatt ttgtactgat gtttattccg atagaaccgg
     7321 cttatattga agcgatgaag cacgatccgc aactgtttaa ctttggctat gaacgcaatg
     7381 tgattttggt ttctcacacc accttaatgc cgattttacg cacggtcgcc aatttatggc
     7441 ggattgaacg aggcaacagc gaggctcgtg aaatcagcga aaaagccggc gaaatttaca
     7501 accaagtgtg tgcggttgcc gatcggttag ctaaattagg taacacgcta aataccgcaa
     7561 ataatcaata caatcaaacc gttacctcgt tagtgggacg gcaaggctta ctgggcaaag
     7621 tggaacgatt ccaacatctt tcaagcaaag caagccaaat tgtgccgcag gttgagctga
     7681 ttgaaaatga ggtggatact attaaattgg aaatggtatc gagagaatta ttggaagaat
     7741 agtcaaatct ctttattccc tacaaaaata tggggtgatt tgaaatacta aagaaaataa
     7801 taaaatgcta aaaaaactat taatcatcga caaccacgac tcttttacct tcaacttggt
     7861 ggatttactc cgtaagcttg atgtgccggc gaaagtggtg ctggttgaag agcttgacct
     7921 caatgaggtg gagcatttta gccatatttt gatttcgccc ggccctgatg tgccgagagc
     7981 ctatctacaa acctttgcga tgttggagcg ttatcatcaa accaaatcaa ttctaggcgt
     8041 ttgcttgggg catcaaacga tttgcgagtt ttttggcggc aagttgtata acctaaacga
     8101 tgttagacac gggcagcaac gcacgctcac tcaaattgag cctaacccca tatttaaagg
     8161 tttgcctaag cagttgaaag ttgggttgta tcactcttgg ggcattttgc aaaattcgtt
     8221 gcaaaataca ccgcttgtac caaccgcagt ttgcgatcaa aatgtgttaa tggcgtttaa
     8281 acaccaacat ttgccgattt ttggcgtgca gtttcacccg gaatctttta tcactgaatt
     8341 tggtcaacaa atgttggcaa attggcttga gattacacaa gatttttagc gtgaaatccg
     8401 ctataatccg tcagttattt acccttttaa aatctgtagg ggcgaaaaat ttttcgcctt
     8461 acttaatatg caagagataa tttaaatgaa agattcgatt atcaataaat tagaaagttt
     8521 aagtgaacgc cacgaagaac tacaggcgtt acttggcgat gcctcaatta tttccgatca
     8581 agacaaattc cgtgcttatt ccaaagaata ttcgcaatta gaagaagtgg ttggcacctt
     8641 taaccgctgg aaaaagctga acaatgatat tgaagaggct caattattac tcgatgatcc
     8701 tgatatgaag gatatggcag cggaagaaat tgcggaaaat aaagccgaaa tcgagaatct
     8761 tgagcaacat ttacaaattt tattattgcc gaaagatccg aatgatgaat acaacgcctt
     8821 ccttgaaatc cgtgccggaa cgggcggtga cgaggctggt atttttgccg gtgatttata
     8881 ccgtatgtac agccgttatt gcgaaagtaa acgctggcga attgaagaaa tgtcggcaaa
     8941 tgagagtgaa caaggcggat ataaagagat catcgttaaa atttcaggcg aaggcgttta
     9001 cggtcagctt aaatttgaat cgggcggaca ccgtgtacaa cgtgtaccga aaaccgaatc
     9061 acaagggcgt attcacacct ctgcttgcac ggtagcggta atgccggagt tgccggaaag
     9121 cgagatgccg gaaatcaatc catctgatct gcgaattgac acctaccgct catcgggtgc
     9181 aggcggtcag cacgttaata ccaccgactc tgcagtgcgg attactcata tcccgaccgg
     9241 gattgtggtc gagtgtcaag atgagcgttc acagcacaaa aataaagcca aagcgctggc
     9301 agtgttagcc tctcggattg tacaagttga gcaagaacgc caagccgcag agcaagcgga
     9361 tacccgccgt aacttacttg gctcaggcga ccgttcggat aaaatccgca cctacaacta
     9421 cccgcaaggg cgtgtgactg atcaccgtat taacctcacg gtttatcgtt tagacgaagt
     9481 gatgaacggc aaaattgatg aattgataca accgattatc actgaatatc aagcggatca
     9541 gttagcggcg ttgtcggagc aaaattaatt ttattgtaag ggtacactgt gtgtgcctgc
     9601 caaatataaa tttgcaaaat tttgactatt tttgatcgct tgtagtttct aaaaagttta
     9661 aaaatttgag gaaaacaaaa tgagaaagtt aggtttatta gcagtattta ctttagtatt
     9721 atcagcctgt tcaaattcaa caaaaattga acaaaccatt ctttccaagc aggatatcgt
     9781 aggctcttgg gtatgcgcta ttaaatacga tgatctaaaa gtaagcactt tagatttttc
     9841 tgaatttaaa gctaatggcg aaatgacgaa tttcggtgat atttctgatg agaattttga
     9901 gcccattaaa tttacttatg taacaggaga taaagggaag tgggacttaa aaggaaatcg
     9961 attagtgatt gattatgatc tttctgaacg taaagtaaaa agaacaacac caaaaaaatt
    10021 tttagagttc ttgaaacagg aagagcgtaa agcctcaaaa acagctaaaa aactccttaa
    10081 atatgaacaa gggattttca atattctgag tgatcagaaa aatactgaaa acagtaaaat
    10141 aatattagat attttgaagt ttggtcattc aagaatggcg attcagcaaa atatgggaga
    10201 caaagtttat tcaggtggtt gtgtaacagc tgataaagca gaagagtatt tagatatcct
    10261 aaaaaataga aattctaaat aatggattac cgagagtggc tcacttttgc tgagcaaaaa
    10321 ttacttgaaa atagcggggc agatccatac ctaaacgcaa aatttgatgc aaatttgcta
    10381 ttgcaagcag tcacaaaacg ttcaaaatcg gccatttttg ctttttcgga aaccctactt
    10441 tctgaaagcg agcttgcaga attagcggaa aaattagctc ggcgtgccaa aggtgaacca
    10501 atggcatata ttttaggcta tcgggaattt tggtcgttgc cgttaaaggt ttcaccggca
    10561 acgctgattc ctcgccctga tacggaacga ctggttgagt tggcgttgga atatgctaac
    10621 aagcggttag gaaatcagaa aatgttgcaa attctggatc tcggtaccgg cacgggggcg
    10681 attgcgttgg cactggcgag tgaattaggc gagaaagccc aaattatcgg ggtggatttc
    10741 caaaatgagg cggtgcaact ggcagaagaa aatcgccgaa acttaggctt aaatcaagtt
    10801 acatttttac aaagcgattg gttcagttcg cttgcaaatc aacaatttga tttaattgtc
    10861 tcaaatccgc cttatattga tgaatcggac gaaaatttga cggtgggaga cgtacgtttt
    10921 gaacctttaa ccgcattagt tgccgataat aaggggttga gcgatttgca aaaaatcatc
    10981 gaaaatgcac cgcttcactt aaaaccgcaa ggggcgttaa tgctggaaca cggctggaaa
    11041 caaggtaact tggttcgaga tttatttgat ttacacttgt gggaacaggt agaaactgct
    11101 caagattatg ccggcaatga ccgagtaacc aaagcgattt taaaataagg cagaaaatgg
    11161 acgatattat tgaagaattg ttaaaagagt tggaagatcc gaaagtaacc atcagcgaaa
    11221 ccgagctgaa aaagtttctt tatcgtgaaa ttttacgatt aactacgctc attgataaga
    11281 atgtaagtga gcaacaagtg tttggtcaga tgtctgcgtt ggtgaaaaaa gctcgctata
    11341 acgtgaatgg cgaaggcgat gaagagagaa ttaaccaatt acttcattta gtctatcgtg
    11401 aatggggctt tcattgctac tatgaagact atttccacac cgaaaatttg ttgctaaatc
    11461 aagtaattcg caaacggcgt ggaatgccgg tttcacttgg ggcggtggcg ctttatttat
    11521 ccgccgtatt ggatttgccg ctttacccgg ttaattttcc gactcagctt gtgttacggg
    11581 ctgaaataca ccagccgaac ggggcaacca aagtgcgttt tatcaacccg tggaacggtg
    11641 aatttctcac catcgaaatg ctgaataaat ggctggaagg agaaatgggc tttggcgtag
    11701 aagttacccc tgatttgtta agacgagcag aaccacaaga gttgctggaa agggtcgaaa
    11761 ctgtgtttaa aatggcactt acccgtgaag gcaaatatga agaaacctta cgcttgattg
    11821 aataccgctt ggcatttagc ccggaagatc cgtacgaaat cagagaccga ggaatggtac
    11881 tggcaagtat ggattgctac caagcagcat tagaagatat taattatttc attgaccaat
    11941 gccctgaaga tccttctgcc gaaattttaa aaatggaagt gaaaggactg caacaaaaaa
    12001 gccaagaaag tgtggtgcat taagctgaga agtagcccca aaggggctga gctatgatta
    12061 acctagtacg gctctgccgt gctaggcaga aaataagaaa caaggactcc ctatgacaga
    12121 taaaattgta aaagttggca atattgaagt ggctaatcac aaaccgttta cgctttttgg
    12181 tggtatgaat gtgctggaaa gccgtgatat ggcacttaga gtatgtgagc aatatgttga
    12241 agtcacgcaa aaactaaatg tgccttatgt gttcaaagcc tcatttgaca aagcaaaccg
    12301 ttcttcaatc cactcttacc gtggaccggg aatggaagaa ggcttaaaga ttttccaaga
    12361 attaaaacaa acctttggcg tgaacatcat taccgatgtt cacgaaattt accaatgtaa
    12421 acctgtggca gaagtagttg atgtgattca actaccagca tttttggctc gccaaaccga
    12481 tttagtggaa gcaatggctc gtaccggtgc ggttattaac gttaaaaagc cgcaattttt
    12541 aagcccgggt caaatgggga atatcgtaga aaagattgct gaatgcggca acgatcaagt
    12601 gattttgtgc gaccgtggca ctaactttgg ctacgataat ctagttgtgg atatgcttgg
    12661 tttcggcatt atgaaaaaag tgtcgaaagg ttgcccggtg atttttgatg tgactcactc
    12721 attacaatgc cgtgatccat tcggtgcggc ttccggtggt cgcagagatc aagtaaccga
    12781 actggcacgc tccggtatgg cgattggttt agccggcttg ttcttagaag ctcacccgga
    12841 tccaaactcg gcgaaatgtg atggtccatc tgcattaccg ctgtcaaaat tagaagcctt
    12901 tgtttcacag atgaaagcga ttgatgagtt ggttaagagc tttgaagaaa ttgatacttc
    12961 caaataaact ttctccgcat taaatccttt cctactttct ttgcttcgcc aaagaaagta
    13021 ggcaaagaaa ggcgacccta cttcgctact tttcttcgct tagtgtgaat gggcttaacg
    13081 aaaaatttac attcgcttcg ctcagagtaa attttcctac ccattaaaac acgctcaggt
    13141 agctcagaag ggagttagaa aggtaaaaga cagaatagga gaaaaaaatg ctaaatattg
    13201 tttttcttga ccgtaccggt attcctgcca ctcacgatat tcctcgtccg aattttccac
    13261 atacttggac ggaatatgcc accacctctg ccgatcaaac ttttgagcgg gtaaaagaag
    13321 cggatattat cattaccagc aaagtgttac tccagcgtga cttgctggct aaattaccaa
    13381 agctgaaatt aattgcgatc acagcaaccg gcacgaacaa tgtggactta gcggcagcaa
    13441 aagagttagg gattgcagtg aaaaatgtaa ccggctattc cagcgttacc gtgccggaac
    13501 acgtcattgg tatgatttac tccctgaaac atcgtttagc cgattatcac cgtgatttaa
    13561 ttacgtctga ccgctgggca acttgcggcc aattttgcta tgtagattac ccgatccacg
    13621 atgtgcgagg ctcaacctta ggcattttcg gtaaagggaa catcggggct gaagtggcac
    13681 ggctggcaca agcggtcgga atgcaggtta tttttgcaga acatcaaggc gcaactgaaa
    13741 ttcgagaagg ctacaccgcc tttgaagagg tattcaaaca agcagatatt atttcactac
    13801 actgcccttt aaccgagcag actcaaaacc tgattaatgc agaaacctta gccttaatga
    13861 agccgaccgc ttatattatc aatacgggtc gaggcccact gattgatgaa caggcattgc
    13921 ttgaggcatt agagcaaggc aagattgccg gcgctgcgtt agatgtttta gtgaaagagc
    13981 cgcctgaaaa agacaaccct ttaatgttag ccgcaaaacg tttaccgaat ttactgatta
    14041 ccccacacgt tgcgtgggca agcgattctg cggttacaac actagtgaat aaagtgacac
    14101 aaaatatgga agagtttgta gcaacgggta tgtagcttga agtaggggct ggtcctgtgc
    14161 cagccctaat attaatagaa tgagagggcg ggtataaaac ccgcccctac caatatcatt
    14221 ttagaaaaac agatgaattt aacccctttt tttattgctt ttcgctattt tagatcgaaa
    14281 agtgctgacc gtttcgggcg gttagtcacc aatcttgcca gccttggcat tgtgctgggc
    14341 gtaatggcat tggtgattgt gctgtcggtt atgaacggtt tggaaaatat gcagaaaacc
    14401 aatctgctat ccaccttgcc gcacgctatc atcacccctc aagaggggca ttttgccaaa
    14461 ggtgaaaaac tggctctacc tgaatttgcc aagcaaagtg tggtgattaa ccgtgcgaat
    14521 gtgattatcc aaagttcaca aggcattaac gccggtcagt taatcggcgt ggaaaatgcc
    14581 acagacgatc cgttgttagt ggcggaaaat atccccgcat tattgcctag cggtgaattt
    14641 aaggtagtaa ttggctctcg tttagccaat aaattgaacg ttacggtagg cgataagctc
    14701 cgcttaatga tcactgaaaa cagccaatat acgccacttg ggcgagtgcc ggtacagcgt
    14761 ttgtttgaaa tttcgggcgt ttatcaatct aatcgtgaag cgagcgaatt taccctcttt
    14821 gctaatttag ctgatgtcgg gcgtttgctt cgcatcagcg aagatcaagt acaaggcgtg
    14881 cgtttatatt tgcaagatcc tttccaagtt accgaactta gccaatattt cgatgcagaa
    14941 cgctaccaaa tcagtgattg gcgtgagcaa aaaggcgaat ttttccaagc ggtgaaaatg
    15001 gaaaaaaata tgatgggctt actcatcagc ctgattattg tggttgcaat ttccaacatt
    15061 gtgacttcac tcagtttgat ggtggtagac aaacagggcg aaattgcaat tttacaaacc
    15121 caaggcttaa ccaaaaaaca agtgatgcag atttttgtgt tccaaggggc gattgtcgga
    15181 gtaattggct cgattattgg tggtttgctc ggcgtattga tcgcctacaa tttagatcag
    15241 attatcctgc tattaaaccc gagcatccat ctgcctaccc taatttcagg cacgcaaatt
    15301 gcggtcattg taggggtgtc gatgttgctt tcactccttt gcacgcttta cccggcatac
    15361 cgagcctcaa aaattgagcc ggcacaggca ttgagatatg aataataaga acggaaataa
    15421 aatgacagaa ttacttcgct gtgaacatat cagcaaattt tacgatgagg gcgaacagaa
    15481 agttcaggtg ctaaaagagg tgtcattttc gatgaacgaa ggtgagctgg tagcgattgt
    15541 cggtagttca ggttccggca aaagcaccct attgcacaca ttaggcgggc tagatcagcc
    15601 aagcaccggt gaagtctgga ttcgagggca atctctgcaa cagctcagtt cagacaaatt
    15661 agcgttattg cgtaaccaaa acttaggctt tgtgtaccaa tttcatcact taatggcaga
    15721 ctttaccgcc cttgaaaatg tgatgatgcc gatgctgatc ggcaaacaga acaaaactga
    15781 agctgccaat cgtgccgaga aaatgctaca agcggtcgga ttagctcatc gaatgacaca
    15841 tcgcccatca gcactttcag gcggcgaacg ccaacgggtg gcgattgccc gagcgttggt
    15901 taataatccg gctctggtac ttgccgatga accgaccggt aatttagacc aaaaaaccac
    15961 tgaaagcatt tttgagctga ttcaacagct caaccaagag cagaacattg cgtttttatt
    16021 agtaacgcat gatttaaatc tagcgaataa actttcacgt agtcttgtaa tgcgagatgg
    16081 cgtgttaagc gaggggagct tatgagtacg ccgtttttca ttagctggcg ttaccaacgg
    16141 ggcaaacaga aaaacaaact ggtttcactg attgctctct tttccaacat cggtattgcc
    16201 cttggggttg cggtattaat tatcgggcta agtgcaatga acggctttga gcgagagctg
    16261 aataatcgtg tgctttcggt tgtgccacac gctgaactgg tttcgtttca aggcaatcag
    16321 cctcaaccaa tttttgatag caaaaaatta gaggcattga taaaaaaatc gcaaaatgtg
    16381 accgctagtt cgccttttgt cagctttacc gccttaattg aaaatggggc tcagcttaaa
    16441 atcgcccagg tgcgaggggt tgatcctaaa aagcaagatc aggccagcca attaagccaa
    16501 tttattccac ccgagcaatg gcaagcgttc aatcagcaat ttcaagccga tgaagatggc
    16561 ttgattttag gagccggtat tgccaaagcg ttagaagttg aggcaggaga cgaagttacg
    16621 cttttaattc ctcagccaac agaagacggc aaattagccc agcccttgcg ttttaaccta
    16681 aacgtaaccg gcattttgcg gctagatggg cagctggatc acagttatgc cttaattcca
    16741 ctgaataaag ctcaagagct gatggaatac caagcgaatg aagtgtcagg gcttgaaatc
    16801 agccttgcca atccgtttga tgtacaacag cttgaaatgc cacaacttaa cggctatacc
    16861 caaccgcttt atttgaatac gtggattgat aaattcggtt atatgtataa cgatattcaa
    16921 ctgattcgca ccgtgatgta cattgcaatg gttctcgtga ttggcgttgc ctgttttaat
    16981 attatttcca ccttgattat ggcagtgaaa gacaaacaag gcgatatcgc gattttacgg
    17041 acactggggg caaataacgg ttttatccgc cgcattttct tatggtatgg cttaatttca
    17101 ggtatgaaag gggcgttatt cgggctgatt ttaggtgtaa ttttatcgct aaatttaacc
    17161 gctattatca aagcgattga agcattcttt gaggtgaaat tgctttcaga cggggtttat
    17221 tttgttgatt tcttaccaag tgaattacat tggcaagatg tcgtctatgt attggcagcc
    17281 acgattatcc taagcctttt tgccagctta taccctgcca accgagccgc taaattagaa
    17341 ccggcaaaag tgttaagtgg gcattaatca ttttcctatt ctaataaaaa agcagctacc
    17401 cctcgattat gtcagaaagg tagctgcttt tatttatgtt attactcttc gcctaataat
    17461 ttcaactcac gagccttaat ttggtttttt agaatttcaa ctaagtctga aacgaggtaa
    17521 gtacctaagt ctgcaccttt acgggtacgc acagacactt taccttcggc gatttcttta
    17581 tcaccgcaaa ccaacatata aggcacacgg cgtaaggtgt gctcacgcac tttgaagccg
    17641 actttttcgt tgcgtaagtc tgctttcaca cgaatgcctg catcagaaag ctgtttcacc
    17701 acttgttgca cataatctgc ttggctgtcg gtaatgttca ttaccactgc ttgggttggg
    17761 gcaagccaag ttgggaagaa accggcatat tcttcggtga taatcccgat gaaacgttcg
    17821 atcgagccta aaatcgcacg gtgaatcatt accggtgtgc ggcgaccatt atcttctgct
    17881 acataagagg ctgctaaacg acccggtaga gcgaagtcaa gttgcactgt gccacattgc
    17941 cattcacgtc ctaagcaatc acgcaatgca aactcaattt tcggcccgta gaatgcacct
    18001 tcgccttctt gaatttcata ttcaagtccg ttgttgcgta aggcgttggc taagcctttt
    18061 tctgctctgt cccacattgc atcatcaccg atacggtttt ccggacgggt tgaaagtttt
    18121 actgcaatgt tagtaaaacc gaaggtgctg taaatgtcgt acaccatttt gatacagctg
    18181 attacttctg actcgatttg ttcttcagta cagaaaatat gggcatcatc ttgggtaaaa
    18241 ccacgcacac gcattaagcc gtgtaatgaa ccggacggct cgttacggtg acacgaacca
    18301 aattccgcca tacggatcgg taaatcacgg taagatttca agccttgatt aaagatttga
    18361 acgtgacccg ggcagttcat cggcttaatt gcatattcac ggttttccga ttgggtagtg
    18421 aacattaaat ctgcgtagtt ttgccagtgt ccggtttttt cccaaagcac acgatccatc
    18481 ataaacggac cttttacttc ttggtaatcg tactctttca atttggtacg cacaaaagtt
    18541 tcaagttcac ggaaaatcgt ccagccgtca ttgtgccaga acaccatacc cggtgcttct
    18601 tcttgcatat ggtataaatc taacgcttta ccgatacggc ggtggtcacg ttttgccgct
    18661 tcttccaaac gttgtaaata ttcggctaat tgttttttat cagcccaagc tgtaccgtaa
    18721 atacgttgta gcattttatt tttgctgtcg ccacgccagt aagcacccgc tactttttgt
    18781 aatttgaagt ggtggcagaa acgcatattt ggtacgtgtg gaccacggca catatcaata
    18841 tattcttcgt ggtgatataa cgcaggcgtt gccgtacgtt caatattttc atctaaaatc
    18901 gccattttgt atggctcacc acgtttctca aaggtatctc gagcttcttg ccagcttacc
    18961 gggcgtttta ccacgtcata gttggttttt gccagctcta acatacgctt ttcaagagcg
    19021 tctaaatctt cttgagtcaa agagcggtct aaatcgatat cgtagtagaa accgttttcg
    19081 atagtcgggc cgatagccat tttaacgtct gggaataatt gcttgatgga gtgacctaac
    19141 aagtgagcgg ttgagtggcg aatgatctct aaaccatctt cgtctttggc agtaatgatt
    19201 tcaagtgtgc tgtcttggct gatgatatca gacgcatcac ggcgttcacc gtttacacga
    19261 ccggcaatgg tggctttcgc taaacctgcc ccgatagatt gggcaacttc cattacagaa
    19321 actgggttgt caaatgaacg ttgtgaaccg tccggtaaag taataattgg cataataaat
    19381 ccttacagtg gtaatccata cgagagatta cttgtgttgt ttgaatgaaa aaaccgccta
    19441 caagcggtct tttttgatta aaattttgca atttgcttat tatttccctt acaagtgggg
    19501 aataaaagca ctgaaattct agcataaaac aaagaaaaat taaactttgc tgttttcagc
    19561 ggccccttca tcaagctcaa tattttcatt ttctgtttgt ggatcttgtt caagtatttc
    19621 aagctgagcc tggtactctt gtaccgcttc ttcatcaaat ggaataagtg cgtcctcaac
    19681 aacttcaatt tcttcaagtg ggcttgcggt tgcaattggg gtagcatatt gcatctctgc
    19741 tcgttccgct ttcggaattg atttggtgcg gaaagcacaa ataaataaac taagtgagaa
    19801 cagtccaaaa agtgcataaa agccatattc agcggaaagg ctcatcgcaa aaccgataag
    19861 cggtggagca actaacgccc ccacaccata gcaaaacagt aaacccctgc ttacttcaac
    19921 cgtgttcata ttattcggca attcatcgtt ggcacgggca atgctcaaag catataagct
    19981 aaacagacta cagccaaaga aaaaggcgat aatatactgt ccccaggcgg tcaaattttc
    20041 ttggaaaatt gcaaataatc cggcaagtgc ggttaaagtg gcaatcactg aacaagctaa
    20101 aatggcgtta cgtctgccaa tacgattcga taatatcgcc atcggcattt ggctgataaa
    20161 accaccgatc atcgagatca tcaaataaag cgagatttca cttaatgaaa agctaaactt
    20221 cagcagaaag actgacgcca ttgtaaaaaa gccgtttacc aacattccgc taataaagct
    20281 ggttgctaag gctaacggtg aaatcgcaaa tagtttagga atactaatgc gctctcgagc
    20341 cggaatatca ggctgaacca ttttagttaa agcaattggg atcatcgaca tcacaaccaa
    20401 aatggtagat aagataaaaa tgtttcggct actaagttct aaacttaata aacttacgcc
    20461 taaaataaag gcgagataga agataatgtt ataagtggca agcactttgc ctctggtatc
    20521 gacattggtt ttttcgctta accaactttc gactaaaagc agcaagctat aatgacagaa
    20581 tcccaaaata attcgtaaca cgccccagat ccacaaagta tcaatcataa tatgaccgag
    20641 agcggcgata gcaaaaacag cacagaaaac gctaaatgaa cggatatgcc caacacttga
    20701 tacaatgcgg tgagcaaaaa tagtgcttaa tgccgcccca ataaagaaag cagcgttaag
    20761 taaaccgatg atgatgtccg ttatccccat ttctgccagt ttgatccctg ctgaatttag
    20821 aaataaaccg tagccgaaaa acagaaaaaa gatacctgaa taaagggagt aaaatttagt
    20881 gctattcatc aatgctcctt caaacattct gccagtatta aatcattgta ccgatttaat
    20941 accttttagg caaaaaagtt attattagcg ttgagaaaat aacttttggc tattttgatt
    21001 aaaaaatcaa atgaaggtga ttttgaaatg tagtaaaaaa tagagcaatc agaattgaaa
    21061 aagggtttgc cgtaacaaag cctttagaaa gattagagtt tcgagaagaa tttgtagctt
    21121 gggctaacca aaacacttgc taggagtgct ttaagcacac cacctaaaat aaatggatat
    21181 aagcccgctt gtaatactgt gccttctggt acaaagaaag ttgagccaag ccgaaagcaa
    21241 aggtgatcac acttgcaatt aaggcgacaa ataaactttt ccaaaaagag tttaatacgc
    21301 ctttatcgct ataatagcct aagaaatagg cggttggaat atagcctaat aagtatccgc
    21361 ctgttggacc aaagaaatga tggaaacctg aagcaccgcc ggcaaagaca ggtaaaccaa
    21421 tcgccccttc aaaaagataa agtaatactg cagcagttgc ggctttacga cccattgcaa
    21481 aaccaaccac agttaaagca agtgtttgcc ctgtaatggg tacagggtac atcggcacag
    21541 aaatttgtgc aaaaatagca agcagtgttg ctccaataaa agttttcaac caaaatgtag
    21601 ttatactatt ggcttctagc caacgtttag tttgaattaa ttgcgtagtg aacataatcc
    21661 tctcctttaa tatggttaaa atgttctcaa ccgattatat aagaagatgt cttttagggt
    21721 aagagtgaat ttaaaatggt aaaaccagtt tatatttatt gtgatgaagg tagcagtgaa
    21781 attggtgttc aatcactgtt attggcagta aaacagcatt tacagcgtcc ggcttatctc
    21841 atcaatgcca aacaaattat tcaaagcaag ttttccgatg gctgtttatt aatcatgccc
    21901 ggtggagccg atttacctta ctgcaaaaaa ttaaacggag aaggcaatcg tagaatccgc
    21961 caatttattg aacaaggtgg agcttatctc ggtatctgtg ccggagctta ttatggctgt
    22021 gctgaattga attttgtagg gcgtgactat agcgtaaatg gtaatcgaga actagcttta
    22081 tttaatggca ttgcgggcat tgcgaaaggc agtctgccgc agtttaccaa cgggcaactt
    22141 tacgataaaa acattggtag caaagcgata gttgaagtaa cacttgcaga gggtggaaaa
    22201 atgccgtttt attatcacgg tggttgctgt tttgaaccaa attcaacaac agtgatttac
    22261 aacccgttgg cttattatcc tgatggctca gtagcaatga tagagggaga gctagggcga
    22321 ggttactatc tgttgtcggg tgtacatttt gaattacaag cggtcgttta ttggcaaaaa
    22381 attgtaaatt gctgtgaaaa tcttgacata aaaacacaag aagaagcaat ttgctctaat
    22441 tttaatgtaa attatggctc gcaaatttgg caacatctaa agcaacgact aaatcaagcg
    22501 taaaaaaata acctttcgct attctgccaa atggtttctg caatcagatt tggtgattct
    22561 gttcttaatt cacatagact attgaaagtc actaaaagcc gttccggtcg gttcggctgg
    22621 ccttgaaagc caaacaccgg catatcgggc gagtcggttt ccagtagtaa actttcaaga
    22681 ggtagtttgc ggatagcctc acgggttttg ttagcacgtt cataggtaat agttcccccc
    22741 acaccaattt tataaccgag atcgacaaaa cgttttgcct gttcatagct gccggcaaag
    22801 ccgtgaacca caccggtttt ggttagttgg gcttttttga ggaacacaaa aagttgatcg
    22861 tggcttttac gtgaatgaag attaacgggt aaattaaatt ttttcgcaag ggaaagttgt
    22921 gcctctaaaa attcacattg ctttttccat aattcagggg tagaaacttc acttaccgct
    22981 ttttccaaac cgatttcggc aatagcggta cactgtggat cttgttggct tagcaaattt
    23041 tccaataaga ttaaatcttg ttgttggtgc tgttgaatat acagtggatg caaccctaat
    23101 ccatacacca aattttccgg tttttgtttg gcacaagcgg tcacttttgc aaaatttttt
    23161 gcaaatacgg caacgataag aatgcattca acctgatgct gtttggcatt ctcaaccaat
    23221 tccggaatgc ttaaattcag gctttctgcg agatagtcga ggtgagtatg agtgtcaaaa
    23281 aatcgcataa taaaaccaat aaaaacgggg actagattgt ccccattttt agcattttac
    23341 gcaagcaatt agtttgttac ataagcatct tcatcacgag cctcagatgg cttgaggaaa
    23401 gcaaagaagc aaataacaca aactaccgta atcgcaaaac cgatataaac tgataattca
    23461 taatctaaac cgaagccgat tttgttgttc gcaaggtaag ttgcacacac ggtagtgata
    23521 aaccatgcag gaatcgagca tacccagtgg aattttttat agcggtataa gtaacctgcg
    23581 gcagtccata acataaccat tgcagtcatt tggtttgccc aagtgaagta acgccataat
    23641 acgctgaaat caacttttga gacaatgaaa ccaagtacga ataatggtac ggcaatatac
    23701 aaacgtttta ctaaggtacg ttgttctaaa ccaaagattt ccgctagttg taaacgagcg
    23761 gctcggaatg cagtgtcacc tgaggtgatt ggtaatacta caacgcctaa tacggcaaaa
    23821 ataccaccga taaaccctaa gaagtgtaac gagctgtcat ataccacttt agacggtgaa
    23881 ccggcagaga tcgcatcttg taaggcttgt gggttttcat agaatgaaag acctactgca
    23941 caccatacta atgcaattac cccttcagta atcattgcac cgtagaaaat aaaacgacct
    24001 tctttctcat tttgcgcaca gcgagccatt aatggggttt gggttgcgtg gaaaccggat
    24061 aatgctccgc aagaaatagt taagaatagt aatggccaaa ttggaacatc acctttcact
    24121 tggaagtttt gggtgaattt ttcccacgtt aagccttgac cgtctgcatt cactgtacgg
    24181 aagaagtcga taggatcagt cgcacttaag tgagcgctga ctagaccata taccatacct
    24241 acagacataa agagtaataa tgctccgaag aaaggataaa ttcgaccgat gattttatca
    24301 acaggtagta atgtagcaag aatatagtaa gcaaaaatga ttaacgtcca cacagaaatc
    24361 acggttgctt tatccatacc ccaaacggtt acgccacctg atgctacaga ttctttaatt
    24421 gcttcaacat cacctaattc cattgcactt tgggttgcac ctgcaatatc catggtgatg
    24481 gtagagagta actgagcagg gcttgcaacg aaaactacgc ctactaataa aagcaagatg
    24541 agcgccatta cgttgatgaa taacttgact ggacgaccca agaatttccc tgccagattt
    24601 ggcatcgttg cgccaccgtt gcggatactt aacataccac agaagtagtc gtgtactgca
    24661 ccggcaaaaa tacaaccaat cacaatccaa agcattgcaa ctggtccgta taaggcacca
    24721 agtattggtc caaaaatagg gccggtaccg gcaatgttta ataattgaat cagccaaatc
    24781 ttggttttag acattggcat atagtcaaca ccgtcgttca ttgcataagc cggcgttgct
    24841 cttttcgggt taatcacgaa gattttttca atgatttttc cgtaagtaaa gtagccaaga
    24901 acaagcacgg ctacacagaa aaagaaccac aacatagtag aaatcctata aattgagata
    24961 aatgatcatt tttagcagaa ctgataaagg cgtgccattg taagtgagga gtgaggataa
    25021 agtaaaatga attgttagat ttgtgtgaat aatttactga aaatgtgagg ttcatcaaaa
    25081 aatccctttg ttctgcgtca atcaaaggga ctttttaaag ttaaatatcg aatttttgaa
    25141 ttttcgcttc aatgccttgg gcatctaatc caagatcggc ataagcttca gcttgagtag
    25201 attggggaac gaaaaagtca ggaataccaa gcattacaag cggtttgatt ttgccgatat
    25261 tttgcaaata ttcattcaca aaactacctg cgccaccttg aatagcattt tcttcaagcg
    25321 taactaacaa ctcgtgtgaa tccgccactt tttgaagtaa tgcttcatct aatggtttaa
    25381 tgaaacgcat atctaccaac gtgtagttat gtttttcagc cacaatcttt gcttcatcaa
    25441 gcaaagcacc aaaatttaaa atcgcaactt ttttaccttc acgaataatg tttcctttac
    25501 ctacttcaag tctttgcatt ggctcaagtt ttaccccttt agcattgcct cgagggtaac
    25561 gaatagcact tggcgtattc atcgtgtaag cggtataaag catttttcgc atttcatttt
    25621 catcgctcgg tgccataatg gtcatattgg gaatacaacg cataaaactt aaatcaaatg
    25681 caccttggtg agtttgcccg tcagcgccga caattccggc tcggtcaatc gcaaaaatca
    25741 ccggcaggtt ttgaatagca acatcgtgaa ttaattggtc ataagctcgc tgcaagaagc
    25801 tggaataaat tgcgactacc ggtttgtaac ctgcgattgc taagcctgcc ccgaaagtca
    25861 ctgcgtgttg ttcggcaatc gccacatcaa aatattgttc agggaaacgt ttggaaaatt
    25921 ctaccattcc cgagccttca cgcattgccg gcgtaatgcc gataattttc ggatcacgct
    25981 ctgccatttc acatagccaa tcgccaaaaa tattggaata agtaggtgct gcttttgatt
    26041 ttggtaactc ggctgcggta gggtcaaatt tcggaacgcc atggtagcca atcggatcat
    26101 tttccgcagg tgtgtagcct ttgccttttt tcgtgcgaat atgcagaaat tgagggcctt
    26161 tcagctcacg catattgctc aaggttttga ctaactcgtc aatattatgt ccatcaatcg
    26221 ggccgatata attaaagcct aactcttcaa acaaagtgct ttcaggggag aaaatcaccc
    26281 ctttcatatg ctcttcgctt tttttcataa agtttttgat ggtaggcact ttatctaaaa
    26341 ttttcttact gccgtcacgc actgaagtat agagcgaacc agaaaaaatg cgggcaaggt
    26401 ggttgtttaa tgccccgaca ttttcagaga ttgacatttc attatcattt aagataacca
    26461 acatatcggt atgcaatgca cctgcgtggt ttaatgcttc aaatgccatt ccggcagtga
    26521 ttgcaccatc accgattaca cagacggttt tacggccggc attttctttt tctgctgcca
    26581 ccgcaatgcc aagtccggca ctgatcgaag tagaagaatg cccaacgctt aacacatcgt
    26641 aagggctttc ttcacgccaa gggaaggggt gaataccatc tttttggcgg atagtgtgca
    26701 tttgatctcg gcgcccagta aggattttat gtgggtaagc ttgatgacca acgtcccaaa
    26761 ttaattggtc gaaaggcgtt tgataaacat aatgcaaagc taccgtaagc tctactaccc
    26821 ctaagccaga ggctaaatgt ccgctagttt gactgactga ttccaataaa taggctcgca
    26881 gttcatcaac tacggtttga agctggtctt tagaaagtaa acgtaaatct tccggtgagt
    26941 tgatttcgct taacagagga tacttctttt ccataatgtt ttattaccca caaccatcaa
    27001 ataatagatg atattaaatt aagctttgag ttcttcggtc aaagtaggct gaatgctatt
    27061 taaaatttct ttaaccacac ggccgttacc aacaaccaga ttacctgttt tcaagtaatc
    27121 tgttccgcca acaaagttag tcacaattgc accggcttca cgggcaataa gttcaccggc
    27181 ggcgaaatcc cacggtttta agccgatttc aaagaaacca tcaacacgac ccgctgcaac
    27241 ataggcaaga tctaaagcgg cagaaccggt acggcggaaa tcagctactc cgttattcat
    27301 taagccttca agcatattta aatgtgcatc acgatgtctg atgactttga aaggaaaacc
    27361 ggttgcaatt acagtgcctt ttaaatcacg gcgttctgca tcaatgcgta aacggaactc
    27421 gtttaattta gccccttcgc cacgcaccgc agtgaaaagc tcgttacgga taggatcgta
    27481 aactacccct actgttgtac gtccgttttc acgcacggca atcgacacag caaaatgagg
    27541 taagcgtttt acgaaattgg ttgtaccatc taatggatcg atcacccatt gtacattttc
    27601 attgctaccg tttaacacgc cggactcttc ggtcacgatc gagtgttcag ggtaagattt
    27661 acggatcaca tcaataattg ccgcttccgc tgctttatcg atttcagtca cataatcatt
    27721 cgtatttttt tgtaaaactt gtgtatcttg aggcgattgt tcatagcctt tggcaataat
    27781 attgcctgct tttcgtgccg cacgaatagc aatgtttaac attgggttca tatttccacc
    27841 agattttaaa gaacataata aagcacgaat tataaagaat gtagcgaaat aaagaaacaa
    27901 caagcggtct aatctgtgaa aaattttgca aaaaaatggc tttttctaac cgcttggagt
    27961 ttggattcgt tataatacct cccattcaag ccacccattt aggtactaaa aatgcaattt
    28021 aaagaaaata accaacctcg ttttaaacac agagaagaac gccgttcaga tgagtgttcc
    28081 ccccgttttt cagataaagg caaaatgcga ggaaatgaag gtaaaagtga cagaccgcat
    28141 aagctacatt ttaagcgtga cgaggcttat tcacgctctg agcagattta tccagcagaa
    28201 ggcaaaaaag ccagtggtga aggtagtgtg caaatttggg taaaaggtgg gaatagctca
    28261 gttaaagaga aaaaaaacgg cccgctttca ccgagagcgc ctgagaaaat taagaaaaat
    28321 cgcttggaag agatgaaagt ctatggcgaa aatgcctgta tcagtttgtt ccaacaacgt
    28381 cctgaatcta ttgtacgttt atgggcaaca gtggaggggg caaaaaaatt aggcgattta
    28441 atgagctatt tggctcagca caaaaaagcc tatcacgtta ttgaccgtga agagatggag
    28501 cgagtcaccg gtactgaaca tcacggcgat atgtgcttat tggtgaaaaa aacggcttca
    28561 tttgtgctag agggctattt acaagtgccg aaaaaacaag attgcttggt actgttagat
    28621 ggtgtaaaca atgctcagaa tgtgggggga atcatcagaa cgtgtgcttt ttatggtgtg
    28681 aaaggcatta ttactgaaaa tgtggatagc ttaaactcca gtgctgcagc tcgtgtcgca
    28741 gagggtggtt tggaatttgt gcgagcgtta gaaactaaaa acaagcatat tgctttggta
    28801 caactccgcc aagccggtta tcaaattgtc cacctcacac gccataagca agccccttct
    28861 ttaaccaaaa ttaagctggc ggaaaaggtg gtttttgtat taagtgagat tcctgcaagt
    28921 gatgtggctt acgcagaaga cacaacaata cagctttcct ttaataatcc gttaaatagt
    28981 ggtttaaatg tggcggtaaa cgcaggtatt ctacttaatc aatggtatca aacccacatt
    29041 ctttaaggaa ttgaaatgaa tcagcaaaaa ccgtttgaag tgattgcgat tgttggcaca
    29101 cctcgccacg acagtgcatt tgaaacacat cttgccgttt ataattggtt aaaagatcgt
    29161 gattatcaaa ttttagtgga aacagaggtt gccactcagt tacagcttaa ggaaagctac
    29221 agtttagatc agattgggca gcgcgcagag ttggtgattg tgataggtgg cgatggtaat
    29281 atgcttggca tcgcccgagc tttggctaaa taccgagtgc cactgatagg cattaaccgt
    29341 ggcaatctgg gttttttaac cgatatcgca cctcaaacgg cttttgaaca gctttatagt
    29401 tgcttagtca aaaatgagta tgtgattgaa gagcgattcc tgttagaggc tttcattgag
    29461 cgcaacggta aaattattgc cgcaaataat gccttgaatg aaattgtggt tcacccaacc
    29521 caagtggctc gaattattga atttgaagtt tatattgacg gaaaattcgc tttttcacaa
    29581 cgtgcagatg gcttgattgt ggcaacgcct acaggctcaa ccgcctattc actttctgct
    29641 ggtggcccga ttttaacccc gaatatgaat gcaatggcat tagtgccgat gcaccctcac
    29701 actctttctt ctcgtccttt ggtggttgat ggcgatagtc aaatttcgct tcgttttgcc
    29761 aaatataata cccctgattt agaagtgatt tgtgacgggc aggtgaatat gcactttacg
    29821 cctgaagata gagtcttggt gcgtaaaagc ccggataaat tacagctgct ccatttaaaa
    29881 gattatagct actttactgt attaggttct aaattaggct gggcaagtaa gttgttttaa
    29941 acacaagcgg tgttttttct gattaaattt gcaaatgcaa tatgaa
//
LOCUS       DANMGB010000008        28821 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.008, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000008 DANMGB010000000
VERSION     DANMGB010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28821
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.008"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(114..785)
                     /locus_tag="PXG19_000287"
     CDS             complement(114..785)
                     /locus_tag="PXG19_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL6065625.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
     gene            1040..3607
                     /gene="clpB"
                     /locus_tag="PXG19_000288"
     CDS             1040..3607
                     /gene="clpB"
                     /locus_tag="PXG19_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL6065626.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            3821..4963
                     /locus_tag="PXG19_000289"
     CDS             3821..4963
                     /locus_tag="PXG19_000289"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL6065627.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(5020..6411)
                     /locus_tag="PXG19_000290"
     CDS             complement(5020..6411)
                     /locus_tag="PXG19_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL6065628.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(6571..7470)
                     /gene="cdd"
                     /locus_tag="PXG19_000291"
     CDS             complement(6571..7470)
                     /gene="cdd"
                     /locus_tag="PXG19_000291"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL6065629.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(7484..8386)
                     /locus_tag="PXG19_000292"
     CDS             complement(7484..8386)
                     /locus_tag="PXG19_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6065630.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(8383..8739)
                     /gene="folB"
                     /locus_tag="PXG19_000293"
     CDS             complement(8383..8739)
                     /gene="folB"
                     /locus_tag="PXG19_000293"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL6065631.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            8809..9414
                     /gene="plsY"
                     /locus_tag="PXG19_000294"
     CDS             8809..9414
                     /gene="plsY"
                     /locus_tag="PXG19_000294"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL6065632.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(9488..11395)
                     /gene="parE"
                     /locus_tag="PXG19_000295"
     CDS             complement(9488..11395)
                     /gene="parE"
                     /locus_tag="PXG19_000295"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL6065633.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            11603..11827
                     /locus_tag="PXG19_000296"
     CDS             11603..11827
                     /locus_tag="PXG19_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6065634.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            11870..12199
                     /locus_tag="PXG19_000297"
     CDS             11870..12199
                     /locus_tag="PXG19_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6065635.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(12238..12624)
                     /gene="cueR"
                     /locus_tag="PXG19_000298"
     CDS             complement(12238..12624)
                     /gene="cueR"
                     /locus_tag="PXG19_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL6065636.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            12713..12913
                     /locus_tag="PXG19_000299"
     CDS             12713..12913
                     /locus_tag="PXG19_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6065637.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            12966..15158
                     /locus_tag="PXG19_000300"
     CDS             12966..15158
                     /locus_tag="PXG19_000300"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL6065638.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(15211..15996)
                     /gene="truA"
                     /locus_tag="PXG19_000301"
     CDS             complement(15211..15996)
                     /gene="truA"
                     /locus_tag="PXG19_000301"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL6065639.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(16061..16750)
                     /gene="folE"
                     /locus_tag="PXG19_000302"
     CDS             complement(16061..16750)
                     /gene="folE"
                     /locus_tag="PXG19_000302"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL6065640.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            16851..17558
                     /locus_tag="PXG19_000303"
     CDS             16851..17558
                     /locus_tag="PXG19_000303"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL6065641.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(17613..18710)
                     /gene="apbC"
                     /locus_tag="PXG19_000304"
     CDS             complement(17613..18710)
                     /gene="apbC"
                     /locus_tag="PXG19_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL6065642.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(18707..20254)
                     /locus_tag="PXG19_000305"
     CDS             complement(18707..20254)
                     /locus_tag="PXG19_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6065643.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(20280..20930)
                     /locus_tag="PXG19_000306"
     CDS             complement(20280..20930)
                     /locus_tag="PXG19_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL6065644.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(21052..22923)
                     /locus_tag="PXG19_000307"
     CDS             complement(21052..22923)
                     /locus_tag="PXG19_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL6065645.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            23105..23374
                     /gene="rpsO"
                     /locus_tag="PXG19_000308"
     CDS             23105..23374
                     /gene="rpsO"
                     /locus_tag="PXG19_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL6065646.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            23446..24315
                     /locus_tag="PXG19_000309"
     CDS             23446..24315
                     /locus_tag="PXG19_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL6065647.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(24405..25670)
                     /locus_tag="PXG19_000310"
     CDS             complement(24405..25670)
                     /locus_tag="PXG19_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL6065648.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(25689..26999)
                     /locus_tag="PXG19_000311"
     CDS             complement(25689..26999)
                     /locus_tag="PXG19_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL6065649.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(27011..27775)
                     /locus_tag="PXG19_000312"
     CDS             complement(27011..27775)
                     /locus_tag="PXG19_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL6065650.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(27775..28710)
                     /gene="hemC"
                     /locus_tag="PXG19_000313"
     CDS             complement(27775..28710)
                     /gene="hemC"
                     /locus_tag="PXG19_000313"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL6065651.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         8514 a         6229 c         5519 g         8559 t
ORIGIN      
        1 gattttatta tctcttcaat tatttaatta aaagtggaaa gggctatatt caaacaactt
       61 taacaaaaaa ggactaatca ctaagattag cccaactcgt tcccaacaaa taattagaac
      121 ttcaccccga aaccggcaaa taagacaacc ggatcaagtt ttacttttac ttcgtgatct
      181 gcacctgctg ctttaaattt tgcggttgtt ttaatgcgtg tgtaccaagc tgccgcgttg
      241 aagtagatgt tatcggttaa ttttacatca acacctaggt ttgctaccgg tccgaaagaa
      301 tgttttttta cacttaagtc agtaacagca gggctaactg atttagcgtg gtagaagcga
      361 gtgtaattta aacctgcacc aacgtaaggt tttacttttg cagttagctc aaagaaatag
      421 tattgggcat aaaggctcgg tggtaattgt tttaagataa caactctatc caaatctact
      481 tctgcacctg attctaaaac tttggctttg gcattaattt tatgagagaa aggggttgca
      541 cctaataact caatacccac attatcggct aacatataag ttgcagttaa gcctaactga
      601 gtattgtttt tcacttctaa atctacatca atacctgtcg ctgcttttga ttttgcatct
      661 gaacttgaat ttgccttaac atgtaccgca ccggcacgga atatcacatc acctgcttga
      721 tgtgccaccg cagttccagt taataatgcc ccacctaaaa taattgctaa agttgatttt
      781 ttcattttca tatcctcaaa aataattaga atacctataa tgaggtaaac tttagcgaag
      841 tgtaaatgaa atgaaataga aatgaattga tatttatcaa acttttaaca caaagatacc
      901 caacaagagt tattttattt atttttgtga tctttttcac atttttactt gaaaattgtt
      961 taccaagctc catttagtgt ttcaacaaga gatgtaaata aaaatttaca ctttctaaac
     1021 tcattgtaag gagaaagaaa tgaattttga aaaaatgacc acaaaactgc aagaagcctt
     1081 ggctgaatca cagtcgcttg cggtaggaaa agataatccg tacatcgaac cggcacattt
     1141 gctctatgcg ttgttaaaac aagaaggtgg ctcgattgct tctttgttta ccacattaaa
     1201 tgttgatgta ccgactttaa ttcgtgaatt acaacaaatt ttagaccgct tgccgaaagt
     1261 tcaaggcggt aacacccaag tttcacaaca gttggtcaga ctgttaaatc aatcagacaa
     1321 actggcacaa caattcggcg acagctttat ttcatcagaa ctatttgttc tagctgcact
     1381 tgatgacaat ggcgatttgg ggaaactatt taaacaattt ggcttaaaca aggaaaaact
     1441 aacacaagcc atcagccaaa ttcgaggagg agacacagtg aataatcaaa atgcggaaga
     1501 tacccgccaa gcactcaaaa aatatacgat tgatttaacc gaaagagcca aagccggtaa
     1561 attagacccg gttatcgggc gtgatgaaga aattcgccgt gcggtgcaag tcttacaacg
     1621 ccgtaccaaa aacaaccctg tgttaattgg tgaaccgggt gtggggaaaa cggcgattgt
     1681 agaaggcttg gcacagcgta ttgtaaacgg cgaagtgccg gaaggcttga aaaataagcg
     1741 tgtactttcg ctggatatgg gagcattaat tgccggtgcg aaatatcgtg gtgaatttga
     1801 agagcgttta aaagcggttt taaacgacct ggcgaaagaa gaagggcaag ttatcctctt
     1861 tattgatgaa attcacacga tggttggagc aggcaaaaca gacggagcaa tggacgccgg
     1921 caacttatta aaaccaagcc ttgcccgtgg tgaattgcac tgtgtggggg ctacaaccct
     1981 tgatgaatat cgccaataca ttgaaaaaga cgcagccctt gaacgccgtt tccaaaaagt
     2041 attggtggac gaaccaacgg ttgaagatac gattgcgatt ttacgtggtt tgaaagagcg
     2101 ttatgaaatc catcatcacg ttcaaattac agaccctgcc atcgtggcgg cggcaacgct
     2161 ttcgcaccgt tatgtgtctg accgtcaatt gccggataaa gcgattgact tgattgatga
     2221 agccgcttca agcctgcgta tggagattga ttctaaacct gagccgttgg ataaattaga
     2281 acgccgcatt atccaactca aattggaacg ccaagcgtta caaaaagagg aagatgaagc
     2341 gagccgtcag cgtttagcca aattagacga agaaatggca gcgaaagagc gtgaatattc
     2401 cgagctggaa gaaatctgga aagcggaaaa atccgcctta cttggtacac agcatattaa
     2461 atcggagttg gaaaatgccc gaattgcgat ggatcaggct cgccgtgaaa acgatttcga
     2521 gaagatgtcg gaattgcaat atggcgtgat tccaaacttg gaaaaacagt tacaagcggt
     2581 cgaaaatggc gaaaaaaatg cagatgctca gctcctccgt actaaagtca ccgaagagga
     2641 aattgcggaa gtgctttcaa aagcaacggg cattcctgtt gcaaaaatga tggaaggcga
     2701 gaaggaaaaa ctccttcgta tggaagaagt attacacgct cgggttatcg ggcaaaatga
     2761 agccgttgat gcggtggcaa atgcgattcg ccgtagccgt gccggacttt ccgatccgaa
     2821 taaaccgatt ggttcattcc tattcttagg accgaccggc gtgggtaaaa ccgagttaag
     2881 caaaacctta gctaatttct tgtttgacga tcctgatgct atggtgcgaa ttgatatgtc
     2941 tgaatttatg gaaaaacaca gcgtatcccg cttagtgggc gcacctccgg gctatgtcgg
     3001 ctacgaagaa ggcggctatt tgaccgaagc ggttcgccgc catccatatt cggtagtgtt
     3061 acttgatgaa gtggaaaaag ctcaccctga tgtgtttaac attttattgc aagtgttaga
     3121 tgacgggcgt ttaaccgacg ggcaaggcag aacagtcgat ttccgcaata cggtagtgat
     3181 tatgacctca aacttaggct cgcatttaat tcgagaaaat gcgtataaag gctatgatgt
     3241 ggttaaagaa atggtgatgg aagtcgtcgg acagcacttc cgccctgaat ttatcaaccg
     3301 tattgatgaa acggtgatgt tccactcact tggtcaagag catatccgtt cgattgcgaa
     3361 gattcagcta caacgcttaa tccaacgctt ggcagaacga ggctatgagg tgacagtaac
     3421 cgatgcagca ttagatcata tcggcaaggc tggtttcgat ccgctgttcg gagcaagacc
     3481 actgaaacgt gcgattcaac aagagcttga aaatccgctt gctcaacaga tcttaagcgg
     3541 taaattatta ccgaataaag ccgttacggt ggattaccaa aacgggcaga ttgttgcaac
     3601 acaataatgt ctccgatggt gcgagcgtcc tcgctcgtac cttacaagcg gtggatttat
     3661 cgtaaaaatt tgcaaaaaat tgctcgaaaa taaccgcttg cacagtaaaa attttcatat
     3721 tgcccttcat taattttcat aagctaatga agggcttttt attactcttt ttgctatcat
     3781 taacggcgtt tataaccaat acaattacaa ggagtaattt atgagccaat tatttccgga
     3841 agcaacaatc cgcactcaag ccccgtatcg taatgatatt gtaggcagct ttctacgtac
     3901 cgatgcgtta aaaaaagcca gagaagattt caatcagcaa aaaatcaccc gtgacgaatt
     3961 gcgtgaagtc acacgccaag aggtcaaaaa attagttgag ttgcaaaagc aacacggtgt
     4021 aaaagcagtc tctgacggtg aatttagccg gacttggtgg catttagatt tcttagctga
     4081 acttgatgga atggattggc aagaaaccga agtctttaac gtgaacttta ccggtcataa
     4141 acccaaaggg caaacggtaa aaatcgtggg cgatattgat ttctccgaaa gccacccttt
     4201 tgtggacgct tatcgtcttt taaaagaagc tgccggcgat tacccaacca aattcacgat
     4261 tccggcaccg acaatgttac atattatctg ctgtgtgcgt gcggaagatt accaaccgtt
     4321 accacaatat caagacgaac aaaaactgta cgatgatatt gctaatgctt atatcaaagc
     4381 aatgcacaaa ttctacgata tggggctacg taacttacaa ttagacgaca ccagttgggg
     4441 acaattctgt gccgaagata aacggaaaga gtttgcagcc agaggattta atttaactga
     4501 tttagcggaa aaatatgtcg cattattaaa ccgtattgtt gatgcaaaac cggcggatat
     4561 gtcaattacg atgcacatct gccgtggtaa cttccgttct tcttggttct cggaaggcgg
     4621 ttatggaccg gttgccgaag tattattcgg taaatgccgt gttgacggct tcttcttaga
     4681 atacgatacc gaacgtgcag gcactttcga gccactacgc cacattaaag atcaacaagt
     4741 ggtactaggc ttaattacct ctaaatttgg cgatttagaa gataaaaatg tgatcattga
     4801 gcgtattaaa gaagcggctc aaattgtgcc aatcaatcag ctatgcttat caccacaatg
     4861 cggctttgcc tccaccgaag aaggcaatat tttaaccgaa gccgcacaat gggcgaaact
     4921 aaacttaatt aaagaaattg cggaagaagt ttggggtagc taatcctcta taatacaaat
     4981 agccgagtaa atactcggct attttagttt gttttaacat tacaaccaga agagataccc
     5041 aacagtcgca atcacaaaga tagagataat atttagccag aaaccaactt taatcatctc
     5101 actttgttta atttgccctg taccaaatac aatcgcattc ggtggggtgg caaccggcaa
     5161 cataaaggcg caagatgctc ctagaccaat aattaaggct aatccgaccg gtggcatatt
     5221 taatgcttgt gctatagaga tgaaaatcgg cactaacaaa gccgcactgg ctgtgttaga
     5281 ggtaacctca gttaggaaaa taataaatgc tgccacaatt aaaccaatta ggtaaaaatg
     5341 ccccccttca attagtgaga cgaccccatc agccataatt ttgctcgcac cagtttgtcc
     5401 taatacagca cttaacgtca aaccaccacc aaataggaat aatacccccc actcggtgtt
     5461 ttcttgaatc tgttgccaat ttgcgacacg agtaatgcaa ataagtgctg cggcaatcaa
     5521 tgcaagaatg gtgtcaaagc tcgcaatttt gccattaatt cccagaaatg cagaaataat
     5581 agggttaatt ttatcaccaa aaatccaacc aagcgcaata aagacgaaaa tagccaaggt
     5641 gataatacga gaacgattta attcaatttt ctcaaatgat cgatcaaaac taactgaaaa
     5701 atttggttta aatacgatat atagtgttgc aatcattaat gggaataaaa ttagcataat
     5761 tggcaaacca tattttaacc aatcagcaaa agtcagattc aattgagaag caacaatcgc
     5821 attcggtggg cttcccacta aagtacccat tccaccaata ctggcactat aagcaattcc
     5881 taataacacg aaaagataag tattatggtt ttgtttctga tcaagtttac ttaaaatccc
     5941 cattgccaaa ggtaacatca ttgcagctgt agctgtatta ctcatccaca ttgacaaaaa
     6001 cgctgttacc gcaaataaat aaataactgc aatcgataat ttacctttag ctaatgccat
     6061 aattttattg gcaatcatac gatctagctg ctgaatgtgt aatgctgtcg ctaaggcaaa
     6121 gcctccaaaa aataagaaaa tcgttggatc agcaaaagca acaagagctt cttttgattt
     6181 aaccagcccc agtgctacag ccaaaatcgg aattaataat gccgtaaccg taacgtgtaa
     6241 tgcttctgtt agccataaga cggcaatgaa aattaacaat gccaacccct tattggcttc
     6301 aggggtaaaa ggcaaggtat ttaacaaaat aataaataaa atagcatctg caacaaaaat
     6361 caagctattg cgtgtatttt tactcggttc aataagagga gtattttcca taaaaacctc
     6421 acaaaatata gataatcagt ggtatcacta tatataaaaa aacgatatag gcaaatataa
     6481 ttgttgcaaa agtgtgaagc tcatcaaaaa atttaacact aaaaaataaa ttgcttaaag
     6541 atacagcacc tttgcaaaaa taaatcaaaa ttacaccgct tgtagcgaaa ggtattcaat
     6601 ctctaaccca aatagtgatt ttgccaatgc ttgagtcatt gcataactac tgagagagcc
     6661 tttcgcctca gccagcacaa ctcgagtaac gggaatatcg gcaagcccta aaaataatcg
     6721 atagttcaac gcgctttgca acggtaaaaa agtaggatta aaagctgcat tctcagtata
     6781 tttaccacaa acaatacgct cacctacttg cagtgcaacc ccactaaatg cgttgctgta
     6841 aggggcataa gcattattgg cagcaaaaat tgccgcttgt tgtaaatgat cgcccttaac
     6901 ctcaaattgt tgcggttgtt catcaaataa gactttctca atccctaaat ctttcggtcc
     6961 aaaactatcc ggcaaatagc tatggagcaa attattttgg ctatgcggta aatgtacttt
     7021 taagcttgcc gcactgttta attcattcat aaattggcgg caatgcccac aaggggtata
     7081 gttcacaacc acatctgtta tcaaagtttc ccctgctaaa aatgcgtgcg agattgcact
     7141 ttgctctgcg tgaacggatt gttgcataca ttccccggaa aactcttggt ttgccccaaa
     7201 atagaaatct ccgtttttgc caatcgcaac cgcccctaca ttaaaatcgg aaactggtgt
     7261 aaccgcataa caggcagcaa tggcaatgca atataaagcc aactcaacac gagagcgttt
     7321 aaatttttca cagagttcat caaccacttc gtaagagagc tgcccgtgaa aatcttgctt
     7381 gataagttgc tcaataatag cttgtgtaac ttcacagttt ttcgctgctt ttaattgttc
     7441 aaaacgctct gtaatgtctg ttcgaaacat actgtacctc cgtttaatgt tttttatagc
     7501 tgcaaatcag tatccctgcc gtaatcagta tggcactaat aatatggtaa gtatgaactg
     7561 attcatttaa taaaataata ctgaacattg ctgcaaagag cggcgtaaaa ttagtcatta
     7621 ccgctccttt agcagaaccg actattgcaa tgccgaaatt ccaaaacgca taagagagaa
     7681 tagaagggcc gataaccaaa tagcctatcc cactccattg taaagcggtc aaatttgcta
     7741 aattttttgc agattctgct acatattcat agataaaaaa tggcgttaac gttagaactg
     7801 ccagccccac taatacggtc aaaaacaccg tattgcttat accttgtgga cgtagccgaa
     7861 tcacacaaca ataaaccgcc cagcttatag tagaagcaat cgcccataaa tcaccttgat
     7921 taattgccaa gctgaataag cgagttagct tcccttgcat caatagccac agcactccca
     7981 gcaaactgat tattgcccca cttagaataa tcgggctgat tttctcctta aaaacgagcc
     8041 gatttaaaaa tagcaccaat acaggcgaaa tagctaaata gagactcgca ttcaatgctg
     8101 ttgtcgtttt taaaccttca tataaggtag ccgggaataa aattacccca agcagaccta
     8161 atacccacat cacacctaaa cgaggtttta ataagtgcat tacccgccaa gttgggcgaa
     8221 aaaagagcaa aactaaaatt aaaaaagccg gcaaccaacg caaataggtt aaggtaatag
     8281 gctgaactgc cccacttaac actttgccta atacaaaatt cccaccccaa aaaagagtag
     8341 caacgattaa actgaaatac cccaatttca gtgatgatga gatcattgat gacctcgttc
     8401 tacaatcaca cctacactgc ttgcttgggc aaccgctttc ggcttatgca gttcaatccg
     8461 aatccaagaa agttgatact ctttttgtaa tagttccgcc agttgatagg caacagtttc
     8521 aactaatttg aaaggttgag attcaacaaa atccagcact ttttgcgata cttccgcata
     8581 attcaagcaa tattgtacat catcggtttc tgccgctttg gaaaaatccc acgccatatc
     8641 aatgttaaaa accaagcgtt gcttaatcgt atgctcccaa ttgtaagccc caatggaagc
     8701 aaaagcggtt agttctcgaa taaaaacctt atcactcatt tttcgtcctg ttttattttc
     8761 tgaatttctg taaaatatag cacaagataa atttaatcag gaaaatttat gaatttaatt
     8821 ccctatttat tgatcttaac cgcctatttg ctcggctcga tttccagtgc ggtcattttt
     8881 tgtaagctgg caggcttgcc tgacccaaga gaagtcggct cacacaatgc cggtgcaacg
     8941 aacgtactac gaattggcgg taaaagtgcc gcattaggtg tgcttttatt cgatatttta
     9001 aaaggcacat taccggtggc gatggggatt tattttgaac tctctccctc acaactcggt
     9061 ttcatcgcct tagcggtttg tcttgggcat attttcccga ttttcttcca attccgtggc
     9121 ggaaaaggcg ttgccaccgc atttggtgca atctccgcat taagctttat tgttgcaggc
     9181 ggtgctatcg gcacttggct actggtgttt ttaatctccg gctattcttc tttaagtgcc
     9241 gtcttcactg ccttggtcgt accgttttac atttggtggt tcgagccaca atttactttc
     9301 cccgtcgcct tagtttgttg cctattggtt taccgccatc acgataatat tcaacgctta
     9361 tggcgtgggc aggaagacaa actgtgggat aaattcaaga aaaatagagc ataaaaatag
     9421 gcatagtgaa ccgttcgcta tgcctatttg caaattattg cggaaaaatc accgcttgtc
     9481 ttctcgacta aaccgctaaa tctgcttcat ctcctcgatt ttgtagccat tgtttacgat
     9541 cttccgctcg ttttttaccc aatagcatat ccataatttc aaaggtattc aattcgccct
     9601 cttctaccgt gtcatcaaag gttaattgta ctaagcggcg agtgcttggc tccatcgtag
     9661 tttcacgcaa ctggctcggg ttcatttcgc ctaagccttt aaagcgttgc acatttggct
     9721 ttcctttttt cttggcaagg cgagctaaaa tcgcctcttt ttccgcctca tctaaggcat
     9781 aatgcacctc atctttgccg atatcaatgc gataaagtgg tggcattgcc acataaacgt
     9841 gtccgttttg caccaatttc gggaaatgac gaaggaataa cgcacacagc aaggtggcaa
     9901 tatgcaaacc gtctgaatcc gcatcggcaa gaatacaaac tttgccataa cgcaactctt
     9961 ctaaattatc gctatcaggg tcaattccca aggctaccgc aatatcgtgt acttcttgtg
    10021 aagccaatac ttggtctgat gaaacctccc aagtgtttaa aatcttacca cgcagtggca
    10081 aaatggcttg atactcttta tctcgagctt gttttgccga accgccggca gaatcacctt
    10141 ctaccaagaa aagttcggta cggctgagat cttgagctgt acaatccgcc agtttgcccg
    10201 gtaaagccgg accactcacc aatttcttac gcaccacttt tttcgccgca cgcatacggc
    10261 tctgggcgga actaattgcc atttcagcaa ttaatttacc tgtctgcaca ttttggttaa
    10321 gccataaact aaaggcatct ttcaaggtgc tatccacata gcttgaggct tgacgggaag
    10381 acaaacgctc tttggtctgc cctgcaaatt gtggctcttg aattttcaga gaaagcacat
    10441 aagcacaacg gttccacaca tcatcagcgg ttaattttac ccctttcggc aataaattat
    10501 ggatttcgca aaactccacc atcgccttta ataaaccgtt acgcaagcca ttaacgtgcg
    10561 tgccgccttg tgcggtcgga atcaggttca catagctttc cgctactaac tcgccccctt
    10621 ccggcaacca agttaatgcc cagcttaccg cctctgtttc agcagtaaca tcaccaataa
    10681 acggtggatt cggcacggtt tcataaccgt ttaatgcctc gctcaaataa tcagataagc
    10741 cgtcttcgta ataccaactt tcttcggtat tgttgatttt atcaataaaa ttgatggtga
    10801 gtttcgggca aagcaccgct ttggctcgta acaaatggcg taaacgactc accgaaaaac
    10861 gagggctatc aaaatatttt gggttcgggt aaaaacgcac tgtcgtgccg gtctgttttt
    10921 tcgggcaagt accaattacc gtcagatctt ccacttttac cccgttggca aaggcaatcg
    10981 aatagacttc tccgccacgt ttaatctgaa tttcaacccg ttcggacagg gcatttacca
    11041 ccgaaatccc caccccgtgc aaaccaccgg aaaacgtata gtttttattg gaaaatttac
    11101 cgccggcgtg caatttcgtt aagataagct ccacccctga aattttctcg gtggaatgaa
    11161 tatcgaccgg cattccccgc ccgttatcca ccacttccaa cgaattatca gcatgaagaa
    11221 tcacatcaat tttatctgca aagccggaca acgcctcatc gacactatta tcaatcacct
    11281 cctgccccaa atggtttgga cgtgtggtat ccgtgtacat tcccgggcga agctgcaccg
    11341 gctcgaggtc tttcagaacg gtaatttcat ccgccccata gcgtttttca gacattatgc
    11401 tttctcttag gcttaaaata aaataaggct gaattttaag gaatattcag ctattttgca
    11461 aaattttggt gaaaaatgac ctgttgttat gcaataaaaa ctatttttgc gatctacatc
    11521 gaaaaaatga gttttaattt ccctatttgc ttattcattc agtatcttaa tctcactttt
    11581 tattttaaaa tggtactata ttatggtagt aaaaatccta aagcggaaat ctcaaaagac
    11641 actacaacaa atctacaccc agcctatttc tgccaatatt aaatggacaa atatagaagc
    11701 tctttttcta gagttaggag cagaaataga agaacgagaa gggagcagaa ttgcagttgt
    11761 tttatttcaa caggtcagag tatttcatcg cccacacccg aatcctgata cagataaggg
    11821 gcggtagcga gtattaaaaa atggttatct gaaaacggag tcattcctta tgcgtaatat
    11881 tatggatatt aatggttata aagctgtcat tgcttacgat cccgaaacag aattatttcg
    11941 aggtgaattt atcggattaa atggtggagc cgatttttat gccgataatg tcattcaatt
    12001 aaaaaaagaa ggtgaactaa gtttgaatat ctttttagaa ctttgtagag aaaaaggtat
    12061 tgagccgttc aaacaatatt ccggaaagtt taatgttcgc ctttcgcctg aattacataa
    12121 agctgcggta attgcagcaa ctgctgaaaa tttaagctta aatgaatgga ttaaccaaac
    12181 gttagaaaag agcgtgtagc ctaattgcaa aacaatcacc tattttgacc gcttgtatta
    12241 cccgtttaac ccattcaata tcgaacactc cgaattggcg ttgccacagc aagagctact
    12301 ccagcttttg agcaaagtca gcatttggtt taaatcggca attttttgtt caagctcacc
    12361 gatatgctgt tcggttaatt gttttacatc tcggcttgag cggtttgggt tgtcgtttaa
    12421 tttaagtagt tcgctgattt gagccagcga aaagcccact tttcgggcat tgctgataaa
    12481 atgtaatcgg ctcaaatcag tagcattgta gaatcgatac cccgcttcgg tgcgacttgt
    12541 cggcggcaga agtcctgctt tttcataatc tcggatttgt ttggcggaaa gcccggtttt
    12601 ttctgcggct tggctaatat tcattataat cctctcactt taatcgcttg accttaacct
    12661 aaggttaagc tttattatac gcctgaataa tcactcaaaa caggagaaaa tgatgacaat
    12721 taccctacaa cttgatggct tacattgtgg caactgtgtg aaaagtgtcg aaaaagcgtt
    12781 aaatggcgtg gctggggtga accaagttag cgtaacgtta gaaccgcaaa ttgctgtggt
    12841 ggaaggctca gcagaagcac aagccttaat tgaagcggtt gaagacattg gctttgacgc
    12901 aaaattagcc taattaataa ggggcagaaa ttttgcccta atctgcccaa tatttcggag
    12961 gataaatgac aagcacagct cactattcgc cagaacaaca acttttgatt gatggaatgc
    13021 actgtgccgc ctgtgttcgg cgagtggaaa aagccttact taaagtggaa aaggtggaat
    13081 ttgcctcagt caatcttgcc gatcaaaccg cttttgtgca aggcaacgcc aaccctgaag
    13141 ccttggtagc agcggtagtt aaaatcggtt ttggggcaga agtgctggaa agcgaggaag
    13201 aacgccgaat taaacaacaa gcccaaacgc aacgagtgtt agggcataaa cgcactcaat
    13261 ttatgcttgc ccttgtagtt ggttttgcct tagttgcttt tgggttctac aaaggaatga
    13321 cggtaaacga aaccaatcgt tcgctttggc tcagctgggc aggtattagc cttgcgacaa
    13381 tgtatttttc aggtaaagat ttctttcttg gggcattttc agcactgaaa aaccgctcag
    13441 ccaatatgga catgttagta gcaatcagca ccggcacggc ttggctctat tcttgttggc
    13501 tcacgctttt cccacaaccg aatgctcacg tttattttga agccagcgtg atgattctcg
    13561 gctttatcaa tctaggaaaa tacttagaac tgaaagccaa acagcgttcc tcgctagcat
    13621 tggaaaaatt gctggatctc gccccaaaac aagcggtcat ttttgaagaa aatattgcaa
    13681 aaaccattcc ggctaaagca attaagccac aaatgcgggt gcaagcctta accggtgacc
    13741 gcttggcggt tgatggtatt ttagacagtg gctctatttg ggttgatgaa tcaatgctca
    13801 ccggtgaagc cctacctgta gagaaaaaaa tcggtgataa agtgcgagcc ggcactctgg
    13861 tgcaagacgg ttcaggcact tacattgccg aacaggtcgg ctcacaaacc gctttggctc
    13921 gtgtaatcaa tgccgttcgc cacgcccaaa gcagcaaacc gccattggca cagtttgtag
    13981 ataaaatcgc cgctgttttt gtgccggtgg tggtttcaat cgcattactt tctgcgttaa
    14041 tttggctggc agttgggcag gattttgcct ttgcactctc gatttttact accgtgttga
    14101 tcatcgcttg cccttgtgca ttggggctgg caattccgct ttctaccatt gccggcgtgg
    14161 cacgttctgc cgaatttggc gtgctggtgc gaaatattga ggcactacaa gcaagcagtg
    14221 aaatcgacac cctagtgttc gataaaaccg gcacactcac cactggcaga atggaagtgt
    14281 cggatgttct cacctttaac ggatttgagc aaaagcgctt gctacaactt gctaaaagtg
    14341 tagagcaaca cgcctcacac ccgattgcga aagcgattgc aaaatttgcc gaaaatcaga
    14401 ccgcttgtgg tgtaaccgat gtgcaagtgt tgaaagggtt aggcatttca gcaaaatatg
    14461 aaggcagtac aatcagaatg ggaaattggc aatttgtagg cgaaaccatt caagcaaatc
    14521 ttgcctccct attgcccgct aaagaggggg atttttcctc aaaaattttt gtttcggtgg
    14581 ataatcaact cgccggtgta ttgtcggttt cagaccaact tcgccctgaa gcgaaagcaa
    14641 ccattcatca attccaagcg gaaggctatc aatgcgtgat gctgaccggt gatcgccaac
    14701 aaactgccga ctatttcgcc aacgcattgg ggttagacgg cgtgattgcg gaggtattac
    14761 cggagcaaaa agcggaaaaa attcgagcct tgcaagcaga gggtaaaaaa gtagcaatga
    14821 ttggcgacgg cataaacgat gctccagctc tggctcaagc caatgtgggc attgcgatgc
    14881 acaatggttc agatattgca gtggaaaccg ccgatctttc gctgatgcga gaagggctag
    14941 caccactgat gcaaattcta ccgttctcta aaaaagtgct gaaaaatatg aagcaaagtt
    15001 tgctcggggc ttttatctat aatgttattg cgattcctat tgctgccggc gtgctttacc
    15061 ctttcaccgg ctggctactc aacccaatga ttgccgccat tgcgatgaca ttgtcgtcaa
    15121 ttaccgtggt gttaaatagt caaaggttgt tgaaataatt taagcggtca aatttgcata
    15181 tttttttgca aatttgaccg cttgtaatca ctaatccgcc aaaaacagcg gcccaagagg
    15241 tgttttcgga atgccaaaat gctcagggta atgcacctcg accaaatata gcccctcggc
    15301 tttcgctgta ggggcagctt tttcccggtc acgttgctcc aacacccatt ttgcccattc
    15361 cacaggctgt ctgccttgcc cgatttcgag caatgttccc acaatattgc gaaccatatg
    15421 atgtacaaag gcgttggctt gaatatcaac aatcacataa ttgccttgcc gagacacatt
    15481 taaatgatga atattccgcc acggcgtatt agattggcat ttggcggcac ggaaagagga
    15541 aaagtcattc tcgcccagca aatactgccc tgcttggtgc attttgcgtt catcaagggg
    15601 aaagtgaaag tgggtaacac ctttaggtaa aattgccgac cgcagttttt ggttaaaaat
    15661 aatatagcgg taacggcggg cggtggcact aaaacgggcg tgaaaatcct cattcaccgc
    15721 taccgcccat ttcaccgcaa tatcatcggg taaatgagcg ttagtgccga aacaccagct
    15781 ttgtagcggg cggtttgctt gcgtttcaaa atgcacgacc tgccctgtgc cgtgcacacc
    15841 ggcatcggtt ctgccggcac aaaacacttc tacgggcgaa ttggcaacaa ccgacaacgc
    15901 ctgctctagc tgttgttgta cactctctac cgcttcttgt cgttgccagc caaaataacg
    15961 gctgccgtca tattcaatac ctaatgcgat tttcatttta ataccttgat aaaaagaggg
    16021 gcgaaaaatt tttcgccccc acagtaattg atatttgcaa ttatttattc aataagccta
    16081 aaaattcttt gcgggtttct cggtcttcta agaaaacacc gccaaaggca gaagtaactg
    16141 tatagctatt ggtgtctttt atgccacggc atttcacgca aaaatgggtg gctttcacat
    16201 acaccgcaac atcgtctgtt tctaaaatag tttgaaaggc agttaaaatc tgttcggtaa
    16261 aacgctcttg cacctgcgga cgttgggcaa aaaactgcac gacacggttg attttcgaga
    16321 gtccaatcac ccattttttc gggtaatagg ctaccgctac tttgccgtca atagtaacaa
    16381 aatgatgctc acaggtagaa gttaaagtaa tatcgtccac cagcaccatt tcactgactt
    16441 tcattcggtt ttcaatattg gtaattttcg ggaaggtagc ataatcaagc ccgctgaaaa
    16501 tttcatcaac atacattttc gccaaacgat gaggcgtttc ttctaagctg tcatcactta
    16561 aatctaaacc gagcaattct aaaactgcct gcatatgctg ctggatttct gctcggcgac
    16621 tggctttatc tttggtatga gtaacagtcg gagtttcaat gccttttgcc aacaaggctt
    16681 ggcgaacttt ttgagcctcc ggcgaaagcg tgttttctgt gatagttaat tcgggcgaga
    16741 tcgttgtcat tggttttcct ctcaaatgta agctgaagat tctaacaaat tgacatcaaa
    16801 aaaaatagct ctaaaatgag ctatttcagc cataaacacc ctctttattt atgcaaaata
    16861 tacagtatct ctttaatgcc gacctgattc ccgaacatca agctgaattt gtgcagtctc
    16921 tcttaacttg caaaaatttt gacaattccg accgcttgct aggcttctca aaagggcgag
    16981 gtacgacttg gtttttagat acctctgctg aactaggtat caatgtggtg cttcgccatt
    17041 attatcgtgg cggcttgttc ggtaaaatca tcaaagatag ttactttttt actcgctttg
    17101 aggccacccg agcgtataaa gaatttttct tactgcaaca aatgttagct tggggtttac
    17161 ctgtgcctcg ccctgtggcg attaaaatag aaagacattt ttgttgctat cgtgccgaca
    17221 ttatgctcga aaagctagaa aacacacaag atttaagcaa aatcttgcaa tcccattctt
    17281 tatcgaacga acaatatgag cagataggga aactgattcg cagtctgcat aaccatcaaa
    17341 ttcaccattc cgacttaaat atccataata ttttgcttgg taatgatggc aaattttgtc
    17401 tgattgattt tgataaatgc ggcattgagc cgggcgaaaa ttggaagcaa aataacctag
    17461 accgcctgtt acgctcgttt aagaaagaac aagggcgatt aaatattttc ttcagcgaag
    17521 aaaattggca ggctgttttg agaggatata ctctctaaga aacaataatg gcacaagctt
    17581 agaaacttgt gccatcaaat catcaatatt aactacttca cttcacgaat cataatttca
    17641 gacggaatca cactgccttg ccagtaaagt tcagaagcta ctttttccgc taatgcgagg
    17701 taggcttggc tgatttcgtg ttccggagct gccaccaccg ttggcacacc gctatctaaa
    17761 tcttcacgca gacgaatatg tagtggtaat tgtgctaaca ctttagtgcc atatttttgg
    17821 gcgatttttt ccgctccgcc ggtgccgaaa attgcctcat ggtgtccgca gtttgagcag
    17881 atatgcattg acatattttc aatcacccca agcactggta ctgagacttt ctcaaacatt
    17941 gagatccctt taatcgcatc taataaggca atatcttgtg gggttgttac taccaccgca
    18001 ccggtcaccg gaatttgctg tgaaagcgta agctgaatat cacccgtacc cggtggcata
    18061 tcaatgacca agtaatccaa ttcattccac caagtttcat ttaaaagctg acttaacgca
    18121 ctgcttgcca tcgggccacg ccaaatggtg gcgttatctt cttccattaa atagccgata
    18181 gaattagatt gcaagccgtg agcggtaatc ggcgtgatgt gcttgttatc aggagaagtt
    18241 ggacgttggt cttttgctcc caacatatgc ggaatagatg ggccgtaaat atccgcatct
    18301 aaaatcccca ctcttgtccc ttgtgctcgt aaggctaaag caagattaac tgaggtcgtt
    18361 gatttcccta ccccaccttt tcctgaagtg accgcaatga tattttttac cccattgact
    18421 gccgggtgtt tattcgcccg ttttaaggtc gcaatttggt aatttaatac ccattttaca
    18481 ccgcttgaac ctgttacttg ctttaattta gcctctgttt cggcttttaa ggtttcaaaa
    18541 ccactgttcc acgcaaatgg catcgtgatt tcaattctaa gaatatcgcc ccctaattct
    18601 gcttttttaa acgcattaag ggcaattaaa tctttctgta aagtcgggtg ggaaaattgt
    18661 tgcaagattg ctttaatttc aacaagttgc tgttcattta attggttcat tggttatcct
    18721 tgtttgctaa attgcgtttt aaatctttgc tataaattac ttcgctatcg ttattcaaat
    18781 caatacccaa aagggaggaa acaatcccaa cccgatgatg gtattgaaat aatggcaata
    18841 cggcaacatc gctataaagc tgctcgctaa tttcttgaat aagtgactct ctcgcttctg
    18901 cactaagcgt ttctgtttgt aaacgattta atttttgatc gactatctca cttttatagc
    18961 cggaatgatt atccgggctc attgaatgaa acttctgcaa aaatacaatc ggatcaggat
    19021 aatctgcaca ccagcctgct cgtgctatct ggtaatcttt ttgttccctt actttattta
    19081 aagtctgcca atcaaccatt ttaggtgtaa tattaaataa ttctgattga gaaagggctc
    19141 gagtaacttg gttagcaata ttaatgctat tctcatcata taacaaagtc agctttaaag
    19201 gattataagg gctaattcct gcttttgtta atagctgctc aaccacaaca ggattccaac
    19261 gcttttctct atcttttact aagctatgtg gaattacaga ctgactcgga accccatatt
    19321 cttgcccact atttgctgaa gccaccattg tccttattgc ttcacgaatc tctcgtttag
    19381 ctaataatgg atcatcaaaa ttgaactcat agtaataaga gcacaaacgc ggaaatttca
    19441 cgatattcgt ttttttattt aataaaggat tctcgacaat atcaaaagca gagcagtttt
    19501 ggatagttgt aattaaatca tactctatag tttgaaaggg aatttcttgg gttcgagcct
    19561 ttaacaccat tttttgagca tctagtttct cgagacggta agacgcattg ctcacgaagt
    19621 tatctatggt tggagcaatc ccttgataag taggtaataa tgcggaatgt gccagcattt
    19681 caggcaattg gtgatttggg tgatttagcc gaattctcaa tgtatgcgca tttaatgcct
    19741 ctacaccgag ttcttcaact gactttattt gctcttcaat cgcttttgca ttttctatac
    19801 ccatatagat gagatattta gacaatacag aatgattttg aggatctatt aaacgtcgcc
    19861 agcttgctac aaaatcttgt gcagtcacag gttggccatt agaccacaca gctttctcat
    19921 ctaaaataaa caaccactct ttttcatctt cagtaaacca attctgagca atggccggaa
    19981 cgacatcacc ttttctgttg taggccgtta aaccgactaa tagatctctt aaaggagcag
    20041 catctgcaga agctttaatt ttatgtgggt cgagttgaaa tacagcagaa taaattgcac
    20101 gtttgagtaa agtatcactc tgccggtttt ctacccagac agattgaatg gattgagggc
    20161 aaattaattg atcacaagat gtaataagca gaatgcaagc ggtaactttt gcaatttttt
    20221 ttacaaatgt aaccgcttgt aaggatttca acataaactc cccaaaggtt aattaagatt
    20281 tattttacaa gaagcacagg aaataaagtt gtaattcctg ccacaataat ttcaattccc
    20341 agcgccatta aaatcagccc catgatacga gtaacgacat tagatcctgt tttgcctaat
    20401 tttttcacca aaggggctga atagcggaat aaaatataac aaattaatgc aaatacaata
    20461 atcgcaatgc taaagccaac atagtcttcc caagtatggt agcgggttcc ccacacaatg
    20521 gttgagccaa ttgcccctgg tcctgccata atcggcattg ctaatggcac gacaccgata
    20581 ttttcgtatt cagtaatatc ttcatttttc tcttctttat tttgtttgtg ttcacctaat
    20641 ttaccgctaa tcatcgtcat cgcaatgctt acaatcaaaa tgccaccagc tactctaaaa
    20701 gagctaagtg aaatgctaaa cgcattgaga atcagattac caaaatagag gctgactaat
    20761 aaaattactc caatagaaac agcggtgatt aagctggtgc gatttctttc cccctcatat
    20821 tggtgagcgg tcatactgaa aaaaataggc aaggaaccaa aaggattgac tatagcaaat
    20881 agaccaatga agaattggag gtagatggca aaattaataa tgatatccac aaaaactttc
    20941 tcaaacaaca gtgtttcggg cgctattata tcggttaatc aaggtagata caaaccaaaa
    21001 gcacccagcc taaaggacgg ttgggtgctt tttgataaaa tgaaaggctt gttagtgtga
    21061 cgaacgttgc tgcataaaat cttcatttac ctcaattgaa gcttttgcac gtagcgattg
    21121 taagaattca ttacgtaaaa ttaaacgatt agcttgttca aattgtggcg ccaatgtctt
    21181 aaactgttca gcattccctt ccgtaatgtt atctaaggca acaataacta catcgccctt
    21241 ttgattacgt gccatttgat aagtcgtttt atcttgcgcc tttttcattg cgaaaatcgt
    21301 tccagccaat accgggtttt ctacttctgc ttgcatataa actaaagttt gtggcgcatt
    21361 aaatttcacg tccactgatt tcccttcatt caaggctttt acattttctt ctactttcgc
    21421 cagcaacgct ttttccgctt tttctgcctt cacaaaattt tcaactgctg cttttgcttc
    21481 atcaaaagtt tgtggacgtt ctgcatcata atcactcact ctcacaaaca atgtctgtgg
    21541 atttgcatca ttcccaacat ctaaagcatc agaattttgt ttattttggc gtagctctcc
    21601 ttcaaacaaa acttttaata ctttctcatt ttgtaaagca gtaggtacgt tttcacgggt
    21661 aaacagatcc gttttttgca gttccacatt accggctttc gcaacttctt caagtgaaga
    21721 attattctca aaggctttat ttgccatttc gcgcgcaact gtaaaatact cagttaacac
    21781 taattcttgg cgaatagttt gggcaatttt atctttcact tgtgctaact caatcacttg
    21841 ctcaggttta cgctccaata ctttgatgat atggtaagca ttatccactt tcaccgctgc
    21901 actcatctgg ccggcagtta aatttgctac agcatcttca aaagctttcg ggaaagtgcc
    21961 agcttttgcc caacctagat caccaccatt atttgctgat aaagtatcgc tagatttgtt
    22021 ttttgccaaa gtagcaaaat cttccccatt tttgagcgct tgctcaatag cctgtgcttc
    22081 cgcttcacta gcgacttgaa tatgagctaa atgggcttca cctttagtta cataatcggc
    22141 tttattgcga tcatagtaag tttgaatttg ctcattggta atctcaactt tgctttccac
    22201 atcttttgga gaaagagtaa cgtactcaac cgctaatttt tcaggtgcta ataatttagt
    22261 tttatttgct tcgtaatagg ctcgcaattc ttgctcggaa gcggtctgat tttccatttc
    22321 ttttgcaact gaaaattcgg ctaaacgcac ttcacgttgt tgcaacagta attttgctaa
    22381 caatgcctgc tgtgccggta cattaaaatc actattgata atcccctctt gtagctggga
    22441 ttgcaacata ccttcctgca caatcgctgc atagccatcg gcacttaaat tattgtggcg
    22501 taatgtttgt tggtataact cgttactgaa tttaccatct tgttgaaaca tctggctgtt
    22561 tacaatttca gatttgattt gatcagcact aatacctagt tttaactctt ttgcatactg
    22621 gcgcagaagc tcttcatcaa ttaatccatt taataccgat tgattaaatt gagcagcata
    22681 ctccgggcta tccattaaat cccaaaagcg actccccagt tcagcattta atctattttg
    22741 ctcacgatta agcgtgttat taaataattg ctgactaatt tcttccccat ttactttcgc
    22801 tacagaatta tcttgtgaaa tcaatcctgt cccaattcca ccgattacaa atgaaataga
    22861 gactaatgca aaaataattt taaagaccgg cccatttgtc cgctcgtgca ttttttcaat
    22921 catttaaaaa ttcctaaatt actcaaaaat tgtcgctgat tatactcttt ctcaaatgag
    22981 aaataaactt gcaaattttt attgaaattt aaccgctttc tctttaaaat tcacagtccc
    23041 tgtcgtagct gagttagaga tcggctattg atgtattatc aacccttaac aaaaggaaat
    23101 taaaatgtct ctaagcgtag aagcaaaagc aaaaatcgtt gctgaatttg gtcgtgatgc
    23161 aaaagacact ggttcttctg aagttcaaat tgcattatta actgcacaaa tcaaccactt
    23221 acaagcacac tttgctgagc ataaaaaaga tcaccacggt cgtcgtggtt tattacgtat
    23281 ggtttcacgc cgtcgtaaat tattagacta cttaaaacgt actgatcttg ctaaatattc
    23341 ggaaactatc gcacgtttag gtttacgtcg ctaatttcaa atattagata tgagagccga
    23401 gctgaaaagt tcggcttttt tataaatttt attcgaggaa aaaatatggc ttttgcgtca
    23461 ttatttacat tattagacga tattgctgcc gtgcttgatg atgtatcgat catgactaaa
    23521 gtggctgcta agaaaacagc aggcgtaatc ggtgatgatc ttgccttaaa tgctaatcaa
    23581 gtcagtggaa agaatgtggt gccagaacga gaactaccga ttgtttgggc tgtagcgaaa
    23641 ggctcattaa tcaataaagt gatcttgatt ccactagcgt tgctgctatc ggtcttttta
    23701 ccgcaggcta ttatcccgct attaatgata ggcggtgcat atttatgttt tgaaggcgta
    23761 gagaaattac tccatcgtct attacataaa aacaatcaag ctcattctga tgaaaccgaa
    23821 accctttctg aaaaagataa aattaaaggt gcaattcgca ccgattttat tctatcagca
    23881 gagattatca ttattgcgtt aggtgttttg caagactctt caaccctaac ccaaatttta
    23941 tctctctccg ctatcggggt cggaattacc ctgtttgttt atggcttagt tggattaatt
    24001 gtaaaactag atgatatcgg tttatggtta atgcagaaaa aaagcacatt ctcacaagcg
    24061 gttggaaaag gcttattatt tgcaatgccg tggtttatga aaggactttc tgtgattggt
    24121 actattgcga tgttcttagt cggtggtggt atttttaccc ataatttacc aatgattcat
    24181 cacttcgtag aacaattcgg tatctctccc catttttcta ctctggttga ttttgcagtg
    24241 ggtattgtgg ttggtattat tgcatgctta attattttac ctttgatgaa attattttct
    24301 aaaaaggcgc actaatcccc aaaagcgtag ctttggttaa agctagcttt ttatctcttg
    24361 ctataaaaaa atagcaggtt tcaagcctgc tattttttta attattataa tgagttagac
    24421 tcagtggctg tttgcggtaa ggctaatggc tcattaactt tagactgagt agccatattc
    24481 acctgtttga gattttcctc acgaatacgg tttgccatta atgtatcccc catctgctct
    24541 gccacgtgca gtgccataat acgatcatca gcaacacatt catcatgagc caataacaat
    24601 tcaaactgag acttcgcttt ttggtattgc ccatctcgtg tataaatata gccaagcgct
    24661 ctagcataat catcggtata tttaacattc gctttatctg cccgttttgc taatactttt
    24721 agtagcttac tgtcagaatc aatttgtaaa cgggttaatt gcacaaataa accttgtaat
    24781 tgctcatctt caaatttctt caacgtttct aaagcaattt cttgtgcaga ttgatgatcg
    24841 tcactatcaa ttaaacgctt gatgacaccg acacgactat acaccgattt acgacgacga
    24901 tttggttggt tttcccacca agaaagcaag ccttcctgcc cttcttcctg taaacgctca
    24961 tcttgtaaac catcatcaac gaaatactct aactcagcat actcttctgc agttaagaaa
    25021 ttacgttggc cgatttcaac taataatcta tctaacgcaa cataagctct ggattcttta
    25081 taaatttgaa tcgctaagcg taatacctca tcgctatgag gtgcaagctc tagtaggcta
    25141 tcaatcgcag ttcgggcagc cggtaatttt ccttgttgta ataaaattcg ggttcgtacc
    25201 aactccactg caacattatt cggtccagct atttcagttg ccttaattaa atatttattt
    25261 gcagctaaat catcaccatt ttgctgagca gcttccgccg ctttaattaa attcagtaca
    25321 ggctcatctg catgttttgc atttttacta aagagttttt ccgcttttga gtaattccct
    25381 tcactcatac gcattaaacc ttccagtgtt tcttgctgag cttttttatg cttacgagtt
    25441 gagaaccagt tataagctcc attactcata cggcatattt tagtgacaat ccattcaagt
    25501 aaataaacta ccgccattgc caacacaaaa aaaaccacaa gcattacaat gctcatttca
    25561 atcacggtag ttgctgtttc aattctgaca taaccttgat ttccggctaa ataaggccca
    25621 gagattagtc caactaataa taaaagcatc aaaaagagcg ttctaaacat aatctattct
    25681 cctttttatt attgtgctga aagaggcatc gcatcttgct ctgcttttac aggctctgct
    25741 tgctctaatt ctttttcagc ttttatttcg actttctcta ttttttcagg ggttttatta
    25801 agttgctgag caatcacctt taagctttgt aatgaagttg gagcatccac ataaatagtt
    25861 tgttctgcca actcatctag ctctttcaag aaatgttgca cattttcatt tgaagtttca
    25921 aaataacttc ttacccaaga gcctaccgtt tgtaacgatt ttttataaag ttcgctttgc
    25981 tggcgaggaa cagctaaaat cgcaatttgt aaacgcaagc gaatgttttc acgcaaataa
    26041 atttcttgat tcggtgcaac aaaggctttc tcatctgctg cattacgttt cgatacacga
    26101 ataaaatgat ctaaaaatga agcagcactt ttttctaaat ttttctccca atccgcaaga
    26161 gaatcactta cttgcccatc ttgtttgcta tttgaagctt gttcactttc caaaatcggc
    26221 aaatcatcta atttattcgc taaatttgcg acacgctgca ttaaggcatt ttgatcgatc
    26281 tgatgcaatg cggttaatgt atttaaatca gttttgattg cctcacgaat gtgaatcgta
    26341 ttcggtgctt ttgataaaac ttgatctgcc tctaacaata aatttttcgc tgtttcaatg
    26401 tcattatcta acaccacttt acgagccgca ttattcaata ggaaatctgc ctcagataat
    26461 agccagaatg tgttatccga accagaggta ttatttagct tttgcagttg aagctgcaaa
    26521 ctactaattt gctgggtata accattttgg gctgtttcta aagctttaat ccgttctaaa
    26581 gctttttgat attccgtgac caattcggca atttgtgctt tttcattttc gaaatttggc
    26641 atctcaacca tagtttgagt agtaggctga tttgctttag cagatactgc ctgaatttga
    26701 gattcaacct ctgcaaactt tttatttgcc atataatgac cagctccgcc aaccgctaaa
    26761 gccactaata gtgcaactaa tgccaagccc tttccgcccg atttttgaac aaccacttgt
    26821 tcttttggcg ctttttgcat ttctgtttga atatctttct ctatagcttc gttcactaca
    26881 tcttcctcaa tctctttttt tgcaaaagat cccgctgaat cgaccgcttg ttgtgcctct
    26941 tctaccacct tttcagctga atgctctaaa tgttcagtta cttttttaga tcttgacata
    27001 ctcgccacct ctagttagat ttgcccactt taaataataa tgtattcatc aaagttacat
    27061 tatcggcttt atccgatacc ctaatcttat cttcttgcca gcccatttgt ttagctatct
    27121 ttgcaatccg ccggctcact acaaccagat cacattcaaa taaccatgct ctacaatctg
    27181 ctttcgcttg ttcataaagt gatcttaaaa tttcactact ggtgatcaca atagtatcta
    27241 ctcccaagcg tttacataag ctgatttttt cgggaatatc atcggtaacc ggctctctac
    27301 gataacactc caaatattga atagttgccc cacgcaagac tgcagtttca gcaagtagct
    27361 cacgcccaga atcggctctt agaattaaaa tagttttatc agttagattc tgcatttcag
    27421 gtaatgccaa aaccccctcg ctattttcaa attctatcgg ataaatgacc gcttgttcag
    27481 ctttttctgt taaatatttc gcagtccgtt gccctaccgc aaaatatttc aaatctgaac
    27541 gaaaatggaa cccggtatct actaatgttt ttgcagcata gtccactgca ttcggcgaaa
    27601 caacaaatac ataatcgtct gattttagcc gagaaatagc cgaaggaagc aaaggtaatt
    27661 ctttaccggc ttcaatcgta aatagcggtt gatgaatagc aaaaatttgc tgttcattca
    27721 acatatctac caattcttgc ccccgactat ccaggcgtgt gaccaacaca ttcattattg
    27781 tacgttttcg ttataaaccg cagctaaaat tttatctgca ccttgagcaa gcaactgttc
    27841 cgccaccaaa atgcctaatt gctccgcctc ttgcttatgt ccttttgccg aagcccgaat
    27901 aatttgtgag ccatctaacg atccaactaa cgcattaagc gttaattcat cgccctctaa
    27961 tgtagcataa ccaccaatcg gcacttggca accgccttgc aaacgggtat tcattgcacg
    28021 ttctgccatc acgcaacaag cggtcgaact atggtttaat tttgcaatgt agttcaaaat
    28081 ccgttcatca ttggctcgag tctcaatccc tactgctcct tgaccagctg cgggtaatga
    28141 ttgttccaca gaaatatagc tacggattcg ctcttgcaag cctaaacgaa ttaagccggc
    28201 agaggctaaa ataatcgcat catactcgcc attatctaat ttgcttaagc gagtgccgac
    28261 attgcctcgc aatgatttaa cctctaaatg cggatatttc gccattaatt ggcactgacg
    28321 gcgtaagctc gatgtaccga ccacagcacc tttcggcaaa tcttctaacg aatggtagtt
    28381 gttcgacaca aacgcatcac ggggatcttc acgttcacaa atcaccgcaa gccccaagcc
    28441 ttcgggaaag ctcatcggca catctttcat tgaatgcacc gcaatatcag ctcgattttc
    28501 taaaagggct aattctaact ctttcacaaa caagcctttt ccgccaattt tggctaatgg
    28561 ggtgtctaaa ataatatcgc ctttcgttac catcgtaacc agttcgacag ataattgcgg
    28621 aaaatgtttt tctaattcgc tttttacaaa atttgcctgc cataaggcta acgggctttg
    28681 acgggttgca atgcgtaaaa tatctttcat aaattctaaa attaaaacat tgagttaatg
    28741 aattatccta ccacttttta gctgaactgc caaaaataat cgtggatttc gctttgcatt
    28801 taatcaaaaa tccgactttt t
//
LOCUS       DANMGB010000009        28607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.009, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000009 DANMGB010000000
VERSION     DANMGB010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.009"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            15..989
                     /gene="znuA"
                     /locus_tag="PXG19_000314"
     CDS             15..989
                     /gene="znuA"
                     /locus_tag="PXG19_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL6065652.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(1041..1361)
                     /locus_tag="PXG19_000315"
     CDS             complement(1041..1361)
                     /locus_tag="PXG19_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL6065653.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            1502..3865
                     /gene="rnr"
                     /locus_tag="PXG19_000316"
     CDS             1502..3865
                     /gene="rnr"
                     /locus_tag="PXG19_000316"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL6065654.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            3869..4135
                     /locus_tag="PXG19_000317"
     CDS             3869..4135
                     /locus_tag="PXG19_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065655.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            4358..4816
                     /gene="mraZ"
                     /locus_tag="PXG19_000318"
     CDS             4358..4816
                     /gene="mraZ"
                     /locus_tag="PXG19_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL6065656.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            4832..5770
                     /gene="rsmH"
                     /locus_tag="PXG19_000319"
     CDS             4832..5770
                     /gene="rsmH"
                     /locus_tag="PXG19_000319"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL6065657.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            5789..6100
                     /gene="ftsL"
                     /locus_tag="PXG19_000320"
     CDS             5789..6100
                     /gene="ftsL"
                     /locus_tag="PXG19_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL6065658.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            6104..8164
                     /locus_tag="PXG19_000321"
     CDS             6104..8164
                     /locus_tag="PXG19_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL6065659.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTARKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            8173..9663
                     /gene="murE"
                     /locus_tag="PXG19_000322"
     CDS             8173..9663
                     /gene="murE"
                     /locus_tag="PXG19_000322"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL6065660.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            9751..11145
                     /gene="murF"
                     /locus_tag="PXG19_000323"
     CDS             9751..11145
                     /gene="murF"
                     /locus_tag="PXG19_000323"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL6065661.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            11166..12248
                     /gene="mraY"
                     /locus_tag="PXG19_000324"
     CDS             11166..12248
                     /gene="mraY"
                     /locus_tag="PXG19_000324"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL6065662.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            12312..13613
                     /gene="murD"
                     /locus_tag="PXG19_000325"
     CDS             12312..13613
                     /gene="murD"
                     /locus_tag="PXG19_000325"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL6065663.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            13613..14791
                     /gene="ftsW"
                     /locus_tag="PXG19_000326"
     CDS             13613..14791
                     /gene="ftsW"
                     /locus_tag="PXG19_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL6065664.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            14910..15965
                     /gene="murG"
                     /locus_tag="PXG19_000327"
     CDS             14910..15965
                     /gene="murG"
                     /locus_tag="PXG19_000327"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL6065665.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            16041..17468
                     /gene="murC"
                     /locus_tag="PXG19_000328"
     CDS             16041..17468
                     /gene="murC"
                     /locus_tag="PXG19_000328"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL6065666.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            17558..18469
                     /locus_tag="PXG19_000329"
     CDS             17558..18469
                     /locus_tag="PXG19_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL6065667.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            18469..19260
                     /locus_tag="PXG19_000330"
     CDS             18469..19260
                     /locus_tag="PXG19_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL6065668.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVTIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            19283..20554
                     /gene="ftsA"
                     /locus_tag="PXG19_000331"
     CDS             19283..20554
                     /gene="ftsA"
                     /locus_tag="PXG19_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL6065669.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            20587..21834
                     /gene="ftsZ"
                     /locus_tag="PXG19_000332"
     CDS             20587..21834
                     /gene="ftsZ"
                     /locus_tag="PXG19_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL6065670.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            21866..22786
                     /gene="lpxC"
                     /locus_tag="PXG19_000333"
     CDS             21866..22786
                     /gene="lpxC"
                     /locus_tag="PXG19_000333"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL6065671.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            22959..24641
                     /gene="recN"
                     /locus_tag="PXG19_000334"
     CDS             22959..24641
                     /gene="recN"
                     /locus_tag="PXG19_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL6065672.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(24688..24763)
                     /locus_tag="PXG19_000335"
     tRNA            complement(24688..24763)
                     /locus_tag="PXG19_000335"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24728..24730),aa:Ala,seq:ggc)
     gene            complement(24843..26282)
                     /gene="gltX"
                     /locus_tag="PXG19_000336"
     CDS             complement(24843..26282)
                     /gene="gltX"
                     /locus_tag="PXG19_000336"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL6065673.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            26457..26532
                     /locus_tag="PXG19_000337"
     tRNA            26457..26532
                     /locus_tag="PXG19_000337"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26490..26492,aa:Val,seq:tac)
     gene            26581..26656
                     /locus_tag="PXG19_000338"
     tRNA            26581..26656
                     /locus_tag="PXG19_000338"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26614..26616,aa:Val,seq:tac)
     gene            26709..26784
                     /locus_tag="PXG19_000339"
     tRNA            26709..26784
                     /locus_tag="PXG19_000339"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26742..26744,aa:Val,seq:tac)
     gene            26833..26908
                     /locus_tag="PXG19_000340"
     tRNA            26833..26908
                     /locus_tag="PXG19_000340"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26866..26868,aa:Val,seq:tac)
     gene            complement(27062..28555)
                     /gene="mltF"
                     /locus_tag="PXG19_000341"
     CDS             complement(27062..28555)
                     /gene="mltF"
                     /locus_tag="PXG19_000341"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL6065674.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT         8674 a         5507 c         6387 g         8039 t
ORIGIN      
        1 ataaggggaa ttttatgttt aaaagaacat taatcggtct agccgtgtta ggtgcaagtg
       61 ttgctcaagc ggatgtatta accagtatta agcctttagg ctttattgcc agtgccatta
      121 ccgaaggggt aactgaaact aaagtattat taccggtaac tgcctctcca cacgattaca
      181 gcttaaaacc ttcagatgtg actcaattac aatctgctca attagtggtt tgggtgggtg
      241 acggcttgga aggcttttta gaaaaaagta ttgaaaaact gccgagagaa aaagtattaa
      301 cccttgaaga tgttgatgcg attgatgata ttgtcgataa agcaagcaaa aaagaagata
      361 aagacgatga tcacgatcat aaacatgaac ataagcacga acacaagcac gagcataaac
      421 acgaagggca taatcacgaa ggacataacc acgatcatca cggacatagc cacgatgaag
      481 attggcatat ttggctctca agcgaggcaa gtgagctggc agcagagcaa attgcggcac
      541 gtttaagcga acaaatgcct gaacacaaag cgaaaattgc ggaaaatctt gcaaaattta
      601 aagcaaatct aaccgctaaa aaagccgaaa ttgcgaaaca attagagccg gtaaaagcca
      661 aaggttacta cacattccac gatgcttacg gctattttga aagagaatat ggtttaaatt
      721 cattgggttc atttaccatt aacccaactg ttgccccggg tgcaaaaaca cttacagcaa
      781 tcaagaaaaa cattgcgaaa aacaaagcac aatgtttatt tgccgagccg caatttacgc
      841 cgaaagtaat tgaaacctta gcaaaagaaa ctaaagtaaa tgttggccaa ttagacccac
      901 tcggtgcaaa agttcagtta agtgcgactg cttaccctga atttttacaa gttttggctg
      961 acgaatttag ccaatgttta acaaaataag ttaaaaatcc cccatttaaa tataaatggg
     1021 ggattttgcg attacatcac ttaagctttt tttaagaatt ctgatttcaa cataatttta
     1081 ccgcaatcga cattatggtc accttgagct aaacggattc ctttgaattt tgtacctttt
     1141 ttcagtactt cagacgagcc ttttaatttt aaatctttga ttaataatac atcgtccccg
     1201 tcagataata aattgccatt actgtctttt acaattagca catcatcatc ttgatccgtt
     1261 tcttcgcccg tccattcata cgcacaatcc gggcaaacaa attgaattga gtcgtggtaa
     1321 gtattttcgc ttttacattc agggcaggtt gggtaaatca ttttaattcc tcaaattaat
     1381 aaagaaccag attatatacc gaaatccagc aaaacgctaa gcggtcatat tttgccgatt
     1441 ttttaccaat cgagctaaaa gtcagttaga atagccttaa ttacacaaaa aggaggatac
     1501 tatgatagtc gatccgaatt atcagcaaga attagaaaaa tacgaaaatc cggtaccaag
     1561 ccgagagttt attttaaata caattcgtga acataacgcc ccaatgagcc gtgatgaatt
     1621 attgtcggct tttcatattg acgatgaaga acgaatggaa ggcattcgcc gccgtctgcg
     1681 tgcaatggaa aatgacggtg aattggtgtt caccaaaggc aaacgctatg cgttgccgga
     1741 aaaaatggat ttaatcaaag gtacagttat cggccatcgt gacggttacg gttttttgca
     1801 agtggaagga cacgaaaaag gggcgactaa aagcgaagat tggtttattc ccaacgccca
     1861 aatggtaaag gtaatgcacg gtgactttgt gctggcacaa ccaaacggca cagaccgcag
     1921 aggtcggaaa gaagtccgca ttgtgcgagt gttggaggcc cgtaagaaac agattgtcgg
     1981 gcgttttttc cttgaaagcg gtatcggttt tgttgtgcct gatgacagcc gcgttaacca
     2041 agatattctc attccggatg aacaccgtat gggggcgaga atggggcaag ttgtggtggt
     2101 ggaattacag gaaagaaaag cgagttttag ccgcccggtg ggaatcatta ctgaaattct
     2161 aggcgataat ttagcgccgg gaatggaaat tgaaattgcc ctacgcaatc acgatattcc
     2221 gcacatttgg ccggaagggg tagaaaaaca aatccgccaa tttagtagcg aagaagtgcc
     2281 ggaagaagcc aagcaagggc gggtggattt gcgagatctg ccactgatta ccattgacgg
     2341 cgaagatgcc cgagatttcg atgatgctgt atttgccaaa aaagagggca acggctggcg
     2401 gttatgggtg gcgattgccg atgtaagtta ttatgttcgc ccaaaaaccg cattagattt
     2461 ggaagcccta aatcgtggta actcggtcta tttcccgaat cgggttgtgc caatgttgcc
     2521 ggaagtgctt tccaatggct tgtgttcact caatccacag gttgacaggc tctgcttggt
     2581 ggcggaaatg tcggtttcca gcaaagggga attacaagat tatcaattct acgaagcggt
     2641 aatgaactct cacgcccgtt taacttacac taaagtgtgg aaaatgttgg aaggtgatga
     2701 agccttgcgt gaacgctatg ctccattagt gccgcatatt gaagaactct atgcaatgtt
     2761 ccaaacctta atgaaagctc gccataaacg aggggcgatt gaatttgaaa ccattgaaaa
     2821 tcaatttatt ttcaatccgc aagggcgaat tgagcgaatt gagccgttaa tccgcaacga
     2881 tgctcataaa ttgattgaag aatgtatgat tttagccaat attgctgccg ctcgttttgt
     2941 ggaaaaagcg aacgaaccgg cgttatatcg gattcacgat aagccgagtg aagaaaaatt
     3001 gctcagtttt aaatcctttg tgcgtgagtg tggcttaacc tgggacgtag gcttagatcc
     3061 aaccccaaaa gattacggtg tactactgga gcaaattgcc gaacgtgccg ataaagagtt
     3121 gattcaaacg atgttgctcc gctcgctgaa acaagcagtg tatgcggcgg ataatatcgg
     3181 gcatttcggc ttggcattaa ccgaatatgc tcattttacc tcgccgattc gccgttaccc
     3241 ggatttactg ttacaccgtg caattaaata tctgatcgaa aaaggcaaag gcaacactcg
     3301 ctactatacc gatggcggtg gttatcacta caagttagat gatatggacg aattcggcga
     3361 taaatgttct gccaccgaac gccgagctga tgaggcaacc cgagaagtgg cagattggct
     3421 gaaatgcgaa tttatgcaag atcatcttgg cgaagagttt gatggcgtga tttcgagtgt
     3481 taccggcttt ggcttatttg taaaactcaa tgagctttta attgacggat tggttcatat
     3541 ttcaacgctg gataatgatt attaccacta tgatgcggac cgacaacgtt taatcggtgg
     3601 cagtgggatc atctatcgtt taggcgatgc agttagagta aaagtaatca atgtgaattt
     3661 agacgagaaa aaaattgatt ttgagttact caccggtaat aagaaaaccg gcaaaaccgc
     3721 caagaaaaaa gcaaaagcga cagaggttcc tgttttcaaa gagcctaaaa cggtaaaaaa
     3781 agccaaaaaa gtcgctgaga aaaaaccggc aaaatctgca aaaaaacgga caaaaacgac
     3841 cgctagtaaa tcaaggaaaa aatagcaaat ggattacaaa aaacaaattt tattcagcct
     3901 tttatttgct ttagtaattg caataataag ctattttttg tttacctata tcccgtttga
     3961 ttgtagcgat ctgagcaaac tcaacgattc acaacgttta gagtgccgaa ctgccgaatt
     4021 tctgggcgtt tattactggc tgccgcacac taccacgctg tttttcggct cggtgttatt
     4081 atattgggcg gtttatggca tgatttcatt agtgcaagca gtgctcaaac gctaacaagc
     4141 agttttgttt ttgcaaaaag ttgcaaatct catctgaata atccttccaa gatcaaaggt
     4201 ctatcaaaaa agatagacct ttattgtgta aataaactaa aactccttga tagatgtatc
     4261 acatatctat aaaattccag caattaagtg ggaaaaagtg gtaaattgtg gaacttttcc
     4321 ttaaatttaa cctcatttaa aaaggtaaat cagtaaaatg tttcgtggtg caagttcaat
     4381 cagcattgat agcaaagggc ggatcgctat tccgacccgt tatcgtgccg agctattgga
     4441 aaaacatcac gggatcttag tttgcactgt ggatatccgc cagccttgtt tgttgcttta
     4501 cccacttcac gaatgggaaa tggttgaaca gaaattgttg gcactatcta attttgaccc
     4561 tgttcaacgc cgtattcagc gagtaatgca aggctttgct accgaatgtg aaatggattc
     4621 ggcagggcga atactgctta gccctacact tcgccaacac gcacaattag agcaacaaat
     4681 tatgctggtt ggacaattaa acaaatttga aatttggcaa gataaacaat ggcaagcaca
     4741 aattgccgaa gatcttgctt ttggcagttc ggcagaaatt ttagactgcg aagcattgaa
     4801 aaacctgtct ctctagtaat tggaaattga gatgagcgag aacccaaaac atattacagt
     4861 attattgcac gaagcggttg acggcttggc aattaagcct aacggtatct atattgacgg
     4921 tactttcggg cgtggcgggc attctcgctt gattttatcc aaactgggcg aaaatgggcg
     4981 attaatcgca actgatcgtg acccacgagc gatagccgaa gctcaaacga ttagtgaccc
     5041 tcgttttcaa attgaacata cggcattttc tgccattccc gaactgtgtg aacgaatggg
     5101 gttggtgggc aaaattgacg gtattttatt ggatttaggt gtgtcttccc cgcagcttga
     5161 cgaagccgaa cgaggcttta gttttatgcg tgacgggccg cttgatatgc gaatggatac
     5221 caccaaaggc ttatcggcag ccgagtggct tgcccaagtt tcggcagaag atttagcttg
     5281 ggtattgaaa gaatttggcg aagagcgttt tgccaaacgg attgcacaag cggtcgtttc
     5341 ttacaataaa tctgcaaatg aaaaaatcag ccgcactttg cagcttgcgc aaattattgc
     5401 ggatgcggtg ccgtttaaag ataagcacaa acaccctgca acccgttcgt tccaagcaat
     5461 tcgcattttt atcaatggtg aattagacga gctggaaaaa gctttaaatt ccgcattaac
     5521 ggtgttagcc cctgaagggc gtttgtcgat tatcagcttt cattctctag aagaccgaat
     5581 ggtgaaacag tttgtgcgta agcatagtaa aggaatggac gtaccccgtg gtttaccgat
     5641 tttagaagca gagctaacca aaaatattcc gctgaaaacc attggcaaag cgattatgcc
     5701 gagcgaagcc gaaattgaag caaatgcccg ctcacgcagt gcggtattgc ggattgccga
     5761 aaaacgctaa cagtaaatag ggaagaatat gtcgaacgaa cgttatccgt tacatcaaat
     5821 catcattgat gatatcttta gccataacaa agtggctctt ttattgttga ttggtgtagt
     5881 gatttcagca gtggctacga tttggataac ccaccagact cgtttatcgg tgagcgaaca
     5941 agggcaactg attcaagcaa accaaaagtt ggaaagccaa tatactaatc tgcaattaga
     6001 agaaaacagc agaagcagtc gggcaagagt tgatgccgcc gctaaatcgt tcggattaca
     6061 gccgattaaa aaagagcaag aaattatttt agttgaataa aaaatggtta aatcagttaa
     6121 attaaaacgt aagcaagaag cccctgtcgc aaaagcagag cctcaacaag cagaaggtaa
     6181 aaaaacaccg agttttttac ctactcgctt tagagtggtt gtgtttttta tgctattaat
     6241 ggttggtggc ttactagcac aaaccgccta tattcagctt tttgactctg aaagattaat
     6301 taaagaggct aataaccgct cacttcgtac taaagaactc caatttaccc gtggacgtat
     6361 tttagatcgt aacgggcgtt ttctctctat tagtgtgcca atgtactcat taacacttga
     6421 cccgagagaa tactttgata ctaagctgcg tcgttctaac gaaagctggc gtgccttagc
     6481 gattgaaatg gaaacatcaa aaggtaaaat tgaggcaaac gttaataaat ttattgaaaa
     6541 gaaaaatttt tcaaaagaaa aagtagattt tgatccacgt tctattttaa atactaaaag
     6601 tgaaggttat tggactcagc ttgcccaagt tacaggtttg gattacaaca gtttaataga
     6661 aaaagtacgg aataacccta gctcggtttt tttacgttta gataacgaaa atttagtaag
     6721 agaacgccag aaattccaag cgttaagcaa agaaatcggc cgttcctata atgacataat
     6781 ggacgagctt tatagcaaaa accgccagcg attcctttac ttatcccgtc atcaatctga
     6841 agcgatcagc gaatatgcaa aagaactaga tattgatgca ttagtgatta aagtcgaatc
     6901 acgccgtttt tacccgctgg cagaagaatc ttcacagttg atcggtttta ctgataaaga
     6961 tgatatgcac ggttcggaag ggctggagcg tagttttgat tccttactta tcggcaaaaa
     7021 cggtaaacaa attatccgaa aagatgccaa aggcaatatt gtggaaaata tccgttcgga
     7081 gaaacagtac gatccgcaag atgttatgtt aagcattgat gaagaattgc agtctatggt
     7141 gtacggtgaa atcaaaaaag cggtacagga aaataatgcg gaatcaggca ctgcggtttt
     7201 ggttgatgtg caaaccggcg aaattttggc aatggcaaat gccccttcat tcaacccaaa
     7261 caaacgggat agttttaaac ctgaattaat gcgtaaccgt gctattaccg acacttttga
     7321 accgggttca acggtgaaac cttttaccgt attaaccgca ttacaaaatg gggtaactta
     7381 tcgtgatgaa gttattggca ctcgcccatt tgtcgtcaat ggacatacaa ttaaagacgt
     7441 tgctccaagg gacagcctta cgcttaccgg catcttgcaa aaatccagta acatcggggt
     7501 cagtaaatta gccctcagaa tgccggcaaa tgcgttagtg gatacttaca cgaaagtcgg
     7561 tttcggtaaa gacaccggtt taggcttggg tgaacaacga ggtacgaacg gtgatcgcaa
     7621 acgttgggcg gatattgaac gtgctaccct ttcctatgga tacggtttaa atgtgacccc
     7681 attacaactt gcccgtgctt atgcgacttt aggaagtttc gggctgtatc gcccactttc
     7741 gattaccaag gtcgatccgc cggtgattgg cgaacgggtg ctaccggaaa aaaccacccg
     7801 agatgtcgtg catatgatgg aaagcgttgc ggctaaaggc gaaggcggac accgtgcagc
     7861 ggtggacggc taccgtgtag ccatcaaaac cggtacagca cgcaaattag aaaaaggtaa
     7921 atatgttgaa aaatatattg cttataccgc agggcttgcc ccggcaagcg atcctcgctt
     7981 tgcattagtg gtattaatca acgaacctaa agcaggcaac tattatggtg gctttgtttc
     8041 tgcaccactg ttctcacgca ttatgggtta caccttaaaa caacgtaata ttaagccgga
     8101 taacttaacg gaaaataccc aaagtgccgt gcgtgaaatt aaattagaac gccctatcaa
     8161 ttaaggttag ctatgaaacg tttactccct tttctgacag aacttgatgc ttgggtggaa
     8221 gaactcaccg agctaaaaca aatgacactt gatagtcgcc aagttcaagc cggtgatctc
     8281 tttgttgctt taaaaggaca tcaagtcgat ggcagaaaat ttattccgaa tgcgatagaa
     8341 caaggagcag caattatttt ggctgaggct gatgaagatc aaccggaaat tgagcttgat
     8401 ccgaaatttg caaaatttaa cctagatcgc accgcttgtt gcaaggttgt ctctgttcca
     8461 cgtctgccaa aattgctctc tgaaattgca ggagctcttt accataaccc gtcacacaag
     8521 ctgactttag ccggcattac cggcacgaac ggtaaaacga ctactgctca attattagca
     8581 caatggcata atttattggg tgggaaatcg gcagtaatgg gtactatcgg caacggtttg
     8641 tacggacaag tgcaagaagc ggtaaatacc accggctctg ccattgaaat tcagcataat
     8701 cttgcgaact ttgttgaact tggagcggat ttttgtgcga tggaagtcag ctctcacggt
     8761 ttggctcaat ttagagccga agccttggat tttgatttag cgatctttac gaatttaagc
     8821 cgagatcacc ttgattacca caacacgatg gaagagtatg cccaagccaa attccgtctc
     8881 ttcaacgaat taagcaccaa agctcaagta attaacgccg atgatgaaat cgggcgtgaa
     8941 tggctgacac aattaccaaa tgcagttgcg gtaagcaccg atccgaagtt tgcaggcaac
     9001 caccaatttg tcaaagccac tgcggtaaaa tttaccctac aaggggcaag tattgcgttt
     9061 gaatcaagtt ggggcaatgg cgagttacat agccgtttaa tcggggcttt caatgtaaat
     9121 aatctgctta ccgcctttgc cggactttta gctcttggct ttgatattca agaactggtt
     9181 aaaaccgccc cgaatttagt tggcgtagca ggtcgaatgg aatgcattac cgctccaaat
     9241 aagccaatgg taattgtgga ctatgctcac acccctgatg ctcttgaaaa agccctacaa
     9301 gcggctcgtt tacattgcga aggcgaactt tggtgcattt tcggctgtgg tggagaccgt
     9361 gacgccggca aacgcccatt aatggcgacg attgccgaga aattaaccga taaagtgatt
     9421 gctacagacg acaaccctcg caccgaagat aatcaaaaga ttatggcaga tattgtgaaa
     9481 ggttttagta aaccccaaca aattatccac aatcgtgaag aggcaattaa aaccgccatt
     9541 gagcaagcta aagccacaga tgtgattcta atcgcaggca aaggtcacga agattatcag
     9601 attattggca cagagaagtt acatttttcg gatcaggaaa cggcaaggaa atatctgttt
     9661 taatgtcact ttctttgcac aagcaaagaa aagtgacagt gacaaataca aaatgctcgt
     9721 aattaatttt ataaagaaaa agataaatca atgataaaac taaccaccca acaaatcgct
     9781 gaaatcctaa atgccaaatt gatcggcaat ggcgaaactg tggtagaaac caccagcacc
     9841 gacacccgac aagcggttga aaacggctta ttttttgcat taaagggcga gaactttgat
     9901 gctcatcact atcttcaaaa tgcagtcgca caaggttgtg tagcggttgt ggttgagcgt
     9961 gagtgtgaaa ttgatgtacc acaacttgtg gtggcagata cccgtttggc attgggggaa
    10021 ttggcgaaat ggttaaaagc taagctgaac ccgaaaacgg tagcgatgac aggttcttcc
    10081 ggcaaaacaa ccgtcaaaga gatgacggca aaaattctgc aaaaaatgac cgcttgcgaa
    10141 caggaagtgc tttatacttt tggtaactta aacaatgact taggtgtacc gatgaccttg
    10201 cttcgcttaa ccgaacagca taaatatgcg gtcattgagc tgggggcaaa tcatatcggt
    10261 gaaatcgctt ataccaccgc tatcgctcag cctgatgcct gcttggtgaa taatgtggct
    10321 gcggcgcatt tagaggggtt tggttcatta gcaggcgtgg cacaagccaa gggcgaaatt
    10381 tatcgtggct tgaaagaaaa tggcaaagcg attgtcaatt tagcttttta ttatccgcaa
    10441 tggcaaaaag agattggctc acgggaaatg caatctttct cttatatcgg gtcagattcg
    10501 gattcttacg cagattactg ggcggaagat gtagaactgc atttaagcgg ttcacgcttt
    10561 acgctacata ccccacaggg cgaaattgct attgatctgc cttatttggg caaacataac
    10621 gtgagcaatg ccttagcggc aacttcgctg gcgatgtctg ttggggcaac gctagaagca
    10681 gttaaggcag ggcttgagca gcgttcaatg gtaaaagggc gtttgtatcc ggtgcaaatt
    10741 aacgaccact gtttgtttat tgatgacact tacaacgcca atgtggattc aatgaaatcg
    10801 gcgatttctg ttttggaaaa ttatccggct tatcgtattt ttgcagtggg tgatatggcg
    10861 gaattgggtg aagaaagtag caaatgccac caagaagtag cggattttgc caaaaatgca
    10921 gcattagatt taatcgtgag ctttggaaaa gaaagtgcgg taatcagcca acaggcagaa
    10981 catcatttta ccgataaaca gcaaatggtt gatttcctac tgccgattat tttgcaaaaa
    11041 atcgaacaaa aacaaccgct tgtattattg gcaaaaggct ctcgtagcca gaaaatggaa
    11101 accgtgattt ccgaattgtg taaaccgttt aacctaaatt tctaattatt tttaaggact
    11161 aagcaatgtt agtttggctt gcagaactat tggttcaata taacacagcg tttaacgttg
    11221 tctcttatat tactttccgt gccattatgg cgttattaac tgcaatggga atcgggcttt
    11281 ggatcgggcc gaaagtaatt cgccgtttgc agatcttaaa atttggtcag gaagtgcgta
    11341 atgacggacc ggaaagccat ttcaaaaaac gtggtacgcc aacaatgggc ggagtgatga
    11401 ttctcgcagc gattggggtg agtacattgc tttgggcaga tctgcgtaat tcctatgttt
    11461 ggttcacgct gtttgtgcta tttggctacg gtgcagtggg ctttgttgat gattatcgta
    11521 agatctctcg taaaaatacc gatggtttga ttgcccgttg gaaatatttt tggttatctg
    11581 ctatcgcatt agtggcggtg tttggtatgt atgcggtggg taaagatacc gctgcaacac
    11641 aattagtcgt gccgtttttt aaagatgtga tgccgcaact cggtttattt tatattgtgt
    11701 tatcctattt cgtgattgtc ggcaccagta atgcggtaaa cctaacggac ggcttagacg
    11761 ggcttgcgat tgtgccaact attatggtcg catctgcctt tgcgttaatt gcgtgggcaa
    11821 ccggtaactt taattttgca caatatttac atattccttt tattccaaat gccggtgaat
    11881 tggttatttt atgtactgcg attgtgggag caggtttagg gttcttatgg tataacacct
    11941 accctgcaca ggtgtttatg ggcgatgttg gctcactttc gctcggcggt gcattaggcg
    12001 tgattgcagt attagttcgc caagaattat tattggtggt aatgggcggt gtatttgtgg
    12061 ttgaagccct ctcggtgatt ttacaagtag gttcatacaa attacgccaa aaacgtattt
    12121 tccgaatggc tccaattcac caccattttg aactcaaagg ctggtctgaa ccacgggtta
    12181 tcgtgcgttt ctggattatc acgctaatgc tggttttagt cggcttagta acattgaaat
    12241 tacgttaatt gattgaataa ggtgcattga gataatgtac cttatgttat ttttaaatta
    12301 cagaataaat tatgcaaaaa caatacgaaa acaaaaccgt tactattatc ggcttaggta
    12361 caacagggtt atcttgtgtg gatttcttta agaaaaaaaa tgccaatatc caagtgattg
    12421 acacccgagc aaacccagcc ggagcggata aattggacgt aactattccg ttgcataccg
    12481 gtgggttaaa cagtgaatgg ttgctgaaat ctgatcttat tgtaattagc ccaggtttag
    12541 ccgttgccac acctgaaatt cagcaagcga ttcaagctgg tgttgaaata gtcggtgatg
    12601 ttgaactgtt ttgtcgggaa gcgaaagctc cgattattgc gatcaccggt tcaaacggca
    12661 aaagtaccgt aacgacttta actaccgaaa tggcgaagca agcggggatt aaagtgggaa
    12721 tgggtggcaa catcggtgtg ccggtattaa gtttgctgga gggcgattat gacctttttg
    12781 tgctggagct atccagcttc cagcttgaga caacttattc actgaaagca aaagctgcca
    12841 ctgttttaaa tattagcgaa gatcatatgg atcgctacga ttcgattgcc gactatcgcc
    12901 aagcgaaatt gcggatttac gataatgcgg aaaatatcat cgtaaacggt gaagatgccc
    12961 aaacttaccc gatacaagcg gtcaaaaaag tgattcgttt tgcagaacaa aatgcggaat
    13021 atagcctacg caatcagatg ctttattcag gcgatgatgc aattatccaa actaaacaga
    13081 tgctgattag cggccgtcat aatgagatga atgcgttagc ggcgatggca ttagcagaag
    13141 cggcgaatgt tcctcgtgaa ggcattgtga aagctttgca aatttatggt ggtttgccac
    13201 accgtttcca agcggtggca accaatgatg gcgtgcgttg ggtcaatgat tccaaagcga
    13261 ccaatgtggg tagcacggta gcggcattaa acggcttgaa tattgccggt acactttatt
    13321 tacttttagg tggtgacggc aaggctgcgg atttttccga actcaaacca ttaattaata
    13381 agccaaatat tgtctgctat tgtttcgggc aagatggagc ggcattggca gaattaagcg
    13441 aacaaagtgt gttggttgaa acgatgcagc aagcaattga agcaatccgc ccacaactga
    13501 aaaaaggcga tatggtactg ctttctccgg cttgtgccag tttagatcag tttaaaaact
    13561 ttgagcaacg tggcgaggta tttatggcat tagcacaagg acagcacgca taatgttaga
    13621 aagaattaag tcggaatggg ataaatgggt cagattaacc ccttctaatt cactttatga
    13681 cagaactcta atttggctat ttttaggcct gctaattatc ggttttgtga tggtaacatc
    13741 tgcttcactc ccagttagca caaggttgaa taacgatcca ttttattttg cgattcgaga
    13801 cgggctgtat attattgctt caattatctt ttgttatgtt tttgtacaaa tcccaattga
    13861 aaaatgggaa aagcataact tggcactgtt ttttatttca atcggttttt taatcgccgt
    13921 actcattttc ggccgctcaa ttaatggtgc agtgcgttgg attccgttgg gtattctcaa
    13981 ctttcagccg gcagaattag ccaaattagc ggtcatttgc tattttgcca gtttctatgt
    14041 acgtaaatat gatgaaattc gtaaagaaaa agccagtttc tggcgaccgg cagtgatttt
    14101 attcttattc ggcttcttgc tgattttgca gccggattta ggtagtacct ttgtattatt
    14161 tgttctcact ttctcaatgc ttttcattgt gggggcaaaa attatgcaat ttatgttttt
    14221 aggcgtggtg ggaacggtgt tatttgcggt gttgatttta acctcggaat accgtttaaa
    14281 acgtgttacc tcctttatgg atccgtttgc tgatgcttat ggcgacggtt tccagctctc
    14341 gaactcacaa atggcatttg gacaaggtga attttgggga caaggtttag gtaattcggt
    14401 acaaaagcta gaatatttgc cagaggcaca tactgacttt gtaatggcgg ttattggtga
    14461 agaatttggt ttctttggta ttgcttgcat cgtactttta cttattctat taacggtgag
    14521 agccttaaaa atcagtaaag aatctttggt gctggaagag cgttttaaag gctatatggc
    14581 atttgggatt gcgatttggg ttttcctaca aggcttcgta aacttagggg tggcatcagg
    14641 tttgctgcca acgaagggct taaccttccc attagtgagt tatggtggtt cgagtttggt
    14701 aattatgtcg attgcgattg cagttttgct acgaattgac cacgaaaacc gtgccgagcg
    14761 aatcgggcac gcaaaaatta aaaccatcta gccgagcggt ctgcaacgtt acaatttgca
    14821 aaattttaca aaaatgagac cgcttgtatt agctggaaag cataaaaatt cagtaaaata
    14881 gcacgtttta gaataaaaaa gagttgaaaa tggcgaagaa attattagta atggcaggtg
    14941 gaacaggggg gcacgttttc cctgcaattg ccgtagctcg agagctacaa aaacaaggct
    15001 ggcaaatccg ctggctgggg acgaaagacc gaatggaagc cactcttgtg ccgaaacacg
    15061 gtattgagat tgattttatt gaaatctcag gcttgcgggg taaaggcgtt gcagcattgt
    15121 tgaaagcacc gtttgctatt tttaaagcgg tgatgcaagc ccgcaaaatc attaaaaatt
    15181 atcagcctga tgcggtgttg ggaatgggcg gttatgtgtc cggtccgggc ggtattgcgg
    15241 ctaaattatg tggcgtgccg gtgattttac acgagcaaaa cgcagttgcc ggcctaacca
    15301 atgtgtggct atccaaaatt gcccgcaagg tgttacaggc tttccctact gcttttaaag
    15361 aggccgaagt agtaggtaat cctgtacgtg aagatttatc tgctcttccg ctgccgaatg
    15421 aacgtttcgc caaacgaggc tacccgatta acattttagt aatgggtggc agccaagggg
    15481 caagagtgat caaccaaacc gtgccggaag tggcaaaagt gttgggtaat aatgtgttta
    15541 tcagccacca agtcggtaaa ggtaatttag ccggtatcga agaagtctat caacaaaccg
    15601 gcaatgggat tgcttccgag tttattgatg atatgaaagc cgcgtatgag tgggcagatt
    15661 tggtgatttg tcgttccggt gcgttaacgg tgtgtgaaat tgccgccgta ggtctgcccg
    15721 ctgtgtttgt gccgttccaa cataaagaca ggcaacaatt tttaaacgct aactatttgg
    15781 cggcagatgg agcagcagtg attatcgaac agagcgattt cactccaaag gcattacagc
    15841 aagccttaga acccttaatt gccaatcgcc aactcttatt ggatatgtca atgcgagcca
    15901 gagcaaaatc caccccaatg gcagcaaaac gtgtagcgga agtgattatt caagaagcga
    15961 attaacttac tacaagcggt cgtttttggt aaaaattttg caaaatgtaa ccgcttgcga
    16021 atagattaaa aggacaataa atgaaaaatt tccaagataa agtcaaaaaa ttagtgcctg
    16081 aaatgcgtcg tgtcagccaa attcatttta tcgggattgg cggagccggt atgagcggca
    16141 ttgcggaagt gttattaaac gagggatacc aaatttcagg ttcggatatt gcagacagag
    16201 cggttacaca acgtctatcc gcagccggag cgaaagtctt tatcggacac caagcagaaa
    16261 atattgctgg ggcgagtgtg gtggtggttt ctactgcgat tgatgaaacc aaccctgaaa
    16321 ttattgccgc tcgagaagct cgaattccgg tgattcgccg agcagaaatg cttgccgaaa
    16381 ttatgcgttt tcgccacggc attgcgattg caggcacaca cggtaaaacc actacaaccg
    16441 caatgatttc aatgatctac accgaagcaa aattagatcc gactttcgtg aatggcggtt
    16501 tggtaaaatc taccggcaaa aatgctcatt tgggggcgag ccgttattta attgccgaag
    16561 ccgatgagag tgatgcttct ttcttgcact tgcagccaat ggtgtcggta gtaaccaaca
    16621 ttgagcctga ccatatggac acctatggtg gcgattttga gaaaatgaaa gagacttacg
    16681 tacgattttt gcgtaactta cctttctacg gcttagcggt aatgtgtgcc gatgatgaaa
    16741 cggtaatgga aattgctcct cgtgtcggca gacaagtgat tacctatggc tttagcgaaa
    16801 atgcggatta ccgaattgaa gattaccagc aaaccggctt ccaagagcat tacaccgtag
    16861 tttgcccaag cggtgaacga attgatgtgc tgttgaatgt gccgggtatg cacaatgcct
    16921 taaatgcaac cgctgcgtta gcggtggcaa aagaagaagg gattggcaat gaggcgattt
    16981 tagctgcttt agctgatttc caaggggcag gacgccgctt tgaccaatta ggttcattta
    17041 ttcgcccgaa cggcaaaatt atgttagttg atgactacgg ccaccaccca actgaagttg
    17101 atgtaaccat tcaagccgct cgttcaggct gggaaggtaa acgtgttgtg atgattttcc
    17161 aaccgcaccg ctattctcgt acccgtgatt tattcgatga atttgtacaa gtactgtcta
    17221 aagtcgatgc cttgatttta ttggatgtgt atgctgccgg cgaagctccg attgtggggg
    17281 cagacagtaa agccttagcc cgttcaatcc gtaatttagg taaggtcgat ccgattttgg
    17341 tttcagatac cgatcaactt ggcgaggtat tagatcaaat tattcaagac ggtgatttaa
    17401 ttttggcaca aggtgcgggc agtgtaagcc gcatttctcg tggcttggct gagagctgga
    17461 aaaattaaat actctctccc cttgcgggag agagaccgaa aaatacttcg ttcagaagta
    17521 tttttcagag agagggtata tatttaaagg atttcaaatg agtattaaaa acgaaaaaat
    17581 tgccgtctta ttcggtggcg tttcgcaaga gcgtgaagtt tcactgaatt ctggtgcagc
    17641 ggtaacagct gcattaaaaa gtttaggcta taacgtagaa ggcattgata ctaaagaatt
    17701 cccgattgaa aaattaaaag aaaaagggat tcagcgtgta tttaatattt tacacggcgg
    17761 tattggcgaa aatggcgtac tgcaaggtgc gttagagcaa atgggtattc cttacaccgg
    17821 ttgtggcgta atggcatcag cagtgacgct ggataaattc cggactaaat tattatggaa
    17881 tgcagtaggt ttaccaacag cggatatggt ggtggttcag cgtggacaag cggtcgattt
    17941 tgaccaaatt attgcaaaat taggcttacc ggtatttgtg aagtcttcgt gtgaaggctc
    18001 aagtgtgggt gtattcaaag taaaaaccaa agaagaattg gcaccggcaa ttcacgaggc
    18061 attaaagttt gattccattg tgttggtgga agaattttta gccggtaatg aatattctgt
    18121 accggtatta gacggacaag ttctaccggc ggtacaagta attccggacg gcgaatttta
    18181 tgactaccac gcaaaatatg tgtcggataa cacccaatat gtagtaccgg cattaaatga
    18241 cgaacgccaa gcagaggtcg ccaaattagt gaaagcggct tacgatgtgg ttggctgtcg
    18301 aggttggagc cgtattgatg tgatggaaga tggcgaagga aaattccgct tggttgaagt
    18361 aaataccaac ccgggaatga ccagtcacag tattttccca aaatcagcag caacagttgg
    18421 tatttccttt gaaaaattag ttgaacgcgt attggagtta agtgcttaat gggcatcttc
    18481 cgcaagaaga acagcacaaa tgtgcgtttg aatgttctta atccaaaaac acctgtttct
    18541 ccacgtaaat ggctagtatt cattaagcca ttaattgtgt tattatgtac actatttgta
    18601 ttcggtgtgt atagtaattg gcaaaatata ctcgaaagtt gggataaaac accgattcgc
    18661 gcttatgcat taacacataa aacacaattt acaacaaatg cagatattcg tgaaactttg
    18721 tctaaagaac ctgctctaaa aggatatttc ggacaaaata ttcaagaggt caaagataag
    18781 cttttatcta taccttgggt taaagatgtg gctgttcgta aactttatcc cgaccgatta
    18841 agtattactt tgctagaaca taaacccgtt gcaatttgga atgatactaa ctttgtctca
    18901 gaacaaggaa ccgtctttag tttaccgaaa gacagaatcg ataaaaatgg acttccatta
    18961 ctctatggtc cagatacgga aggaaaaagt gtattagagg catggaataa aatccgagct
    19021 gatctaaatg cccgcaactt ggatttaacc tccgtttctg tagataatcg aggttcttgg
    19081 acaattaggc tttctaatca agtagaatta agattaggaa gaggggaatg gacttctaaa
    19141 attgatcgtt ttgtaacaat ctttcctgaa attcatatac ctgaaggtaa tagattagct
    19201 tatgttgatt tacgttatcc acatggcgcg gcggttggat ttagtcctat aaaaaattaa
    19261 actcagtgaa cacaaaaaca ttatgacaaa agcagtagaa tcaaaaatta tcgttggtct
    19321 tgacattggg acatcaaagg ttgttgccgt tgttggtgaa gtattacctg atggtgtaat
    19381 taatgttatg ggagctggcg tttgcccttc taaaggagtc gatcgaggtg gcgttattga
    19441 tcttgacgct gccgttaatt ctattcaaag agccattgag caggcggaat ctattgccga
    19501 ttgtcaaatt atgggtgtaa cactggcaat ctcaggtcag catattgttg gtttaaatga
    19561 agcaggatca tcaacattat ctggaggtat tgttacccaa gataatattg aaagtgctgt
    19621 ggatatggca aaggcaatta aattacaaga tggcttagaa acattacaca tgattccaca
    19681 agaatatcac gtggatagat tgcctgcgac taaaaatcca attggcttat cgggtatgcg
    19741 tttacaagtt caagcacact taattgcttg ccatcaagct tggttaaaaa acttaaaaaa
    19801 tgcggttgaa catgctaaat taaaagtcga tcaagttgta ttttcaggtc ttgcctctag
    19861 ctattctgtt ttaactgaag atgaaaaaga gctgggtgtt tgcttaattg atattggtgg
    19921 cggtacgatg gatgtactag tttataccga tggagcatta agatacagta aagtcattcc
    19981 atttgcaggt aataacatta ctgattattt ggctcgtgta tttacgacat ctcgccctga
    20041 agctgaaagc cttaaagtag gttatggtag cgcaatttcg cctccaaccc ataattcaga
    20101 taaaaaaatt gaggtggcag gactaggtgg acggatggca agaaccttta cccgagctca
    20161 ggtggcaacg gttacctcac aatgttataa cgatttgcta aaagttgttg aagaggaatt
    20221 aacccaatta cgccatgaac ttttccaaaa aggaataaaa caagagttaa ttgccggtgt
    20281 agtcattact ggtggtggct cacaaattga agatattgta gaatgtgcta aatcaatttt
    20341 tggttcacaa gttcgtgttg gatatccact caatattact ggcttaaccg attatgtgaa
    20401 taaaccacaa tatgcaacag cattagggct tttacaatat agccactata attatactga
    20461 acaaggtaca agtacagatt ctaatgaaga tatctttgct cctattggtc gtggaaccaa
    20521 gaaaatcatt gacttcttca aatcaaaatt ttaatagtgt taaaataaac acgcagggag
    20581 ataaaaatgt ttgaacctat tattgaacaa acgcaagatg ctatcattaa ggtagtgggt
    20641 gttggtggcg gtggcggtaa tgccgtagac agaatgtctc gctctgccga tgatattaaa
    20701 ggtgttgaat tctttgatgt aaatactgat gctcaagttt taagaaaaag aaccacacgc
    20761 caaactatcc aaattggagc aagtacaact aaaggtttag gtgcaggtgc tgatccaatg
    20821 gtaggaaaac aagctgccga agaagatcgt gaggctatcg ctaatgcatt aaaaggtgca
    20881 aatatgacct ttattgctgt tggtatgggt ggaggtaccg gtaccggagc agcccctgtt
    20941 gttgctcaaa ttgccaaaga gcaaggctca ctaactgtag gcgttgtaac aaaacctttc
    21001 cgcttcgaag ggcctcgccg tatgcgcttt gcagaccaag gcattaaaga gctttctcaa
    21061 tatgttgatt ctcttattat aattcctaat gataaattac gtggtttagg taagcaaaca
    21121 acagcagtag atgcctttgc cgcagcaaat gatgttttaa gtaactgtgt gcttggtatt
    21181 accaatatga ttaccagttc gggcggttct accggtgcag atattaacgt ggacttcgcg
    21241 gatgttcgta cagtaatgtc tggtaaggga cacgctatga ttggtacagg ttttgctgaa
    21301 ggtgaagttg gtgaaggacg agcggaaaaa gcaatgaatg atgccatttc tagtccatta
    21361 cttgaaaatg tggatatttc aggtgcaagt ggtatgctca tcaacattag tgctgggaca
    21421 gatttcttat tagaagaagt ttatgctatg atggacttaa tttatggctt tgcaacagaa
    21481 gatgccgcaa ttgtatttgg ttgtaactat taccctgaaa tggatggaaa agtgagtgtc
    21541 actcttgtcg caacaggaat aggccaacct gaggaagctc tacatatgcc acataaggct
    21601 cagccagtat atgcacagca aggaaatcat gttcaagcta cacagcctac tcagccaaac
    21661 catgcggtac aacaaccaaa ctttactcaa ccgtcaagtt atggtcagcc aaatcaattt
    21721 agtggtcaac cacaaccact acaacaacct gtggctccaa aaccacaatc ggttgataca
    21781 gcacaaattt ttaacccaaa ttcaattccg ggttttatga gaaatagtca ataacttcca
    21841 ctcatttcgg aagtaaggac aaaatatgac taaacaaaga acattaaaac aagcagcaaa
    21901 agtaacaggt attggcttac atagcggcaa aaaagtaacc ttaacgttac gccctgcccc
    21961 agctaataca ggagttattt atgcccgtac cgatttagag cctgtcgttt atttccctgc
    22021 aagcgcagac tctattcgtg atacacaatt atgcacatgt atggtaaatg atgatggtgt
    22081 tcgtatttca acagtagaac atttaaacgc agcaatgtca gcattaggct tagataatgt
    22141 tattgttgaa gtagatgcac ctgaaattcc gattatggac ggtagttcaa gcccatttat
    22201 ctatctttta ttagatgccg gcatcgaaga acaagatgca ccgaagaaat ttattcgcat
    22261 taaagaaaca gtacgcgttg aagaaggcga taaatgggcc gaattaaaac catacaataa
    22321 aggttttaaa ttgaacttca ctattgactt tgagcaccca ttaatcccca aaaatgtagg
    22381 gagctattcc attgattttt ctgctgagaa ctttattcag caactaagtc gagcgagaac
    22441 ctttacattt atgaaggatg tagaatactt gcaatctatt ggtcttgcat taggtggaag
    22501 ccttgataat gctattgtat tagatgatta ccgaattcta aatgaagacg gtttacgatt
    22561 taaagatgaa ctggttcgcc ataaaatgct ggattcgata ggtgacttat atatgtgtgg
    22621 ttataatatc ctaggtgaat ttagtgcata taaatcaggt catggcgtta ataataaatt
    22681 attaagagct gtattggaaa ataaaaacgc ttgggagttt gttacctttg aagataaagc
    22741 agaagtccca caaggttacc aagtacaaca agaaattttt atttagtcta aatggcttaa
    22801 aagacgaaca gaaatgttcg tcttttattt tgcaaatttt ttctaatatt taaccgcttg
    22861 caacccgcct cattagcgat tttttcgccc ttatctattt actgtttaaa aaaacagttg
    22921 tactatatac ccatacagtt aatcttgtgt ggtgtattat gcttactcaa cttactatta
    22981 ataattttgc gattgttcgc catcttattc ttgaattaaa tgaaggtatg tctgttatta
    23041 ccggtgaaac cggtgccggg aaatcaatcg ctattgatgc cttagggcta tgcttgggtt
    23101 atcgttctga aagtgggatg attagaaacg gttcggacaa agcagatata agtgcaacct
    23161 ttactatgca gccacatagc cctgcttatt tatggctaca agagcatgaa ctgcttgatg
    23221 aagataatcc tcaagagtgt atcttacgcc gtatgattaa tattgatgga cgctcaaaag
    23281 cctttgtaaa taaccgatca ttacctgttt cacaacttcg agagttgggg caatatctta
    23341 ttcatttaaa tgggcaacac gcaccacaat tactcctaaa aaacgaatat caacttgaaa
    23401 tagtcgatca ttatgccacg ttacagcctc tattgatgaa gatggcaaag caatatggga
    23461 attggaaaga actgaataag caggtaaaaa atttccaaaa acagtgccaa gaaaatgaag
    23521 ctcgcaaaca gctattagaa tatcaagttg aggaattaga tgaatttgca attaaagcaa
    23581 acgaatttga agaaatggaa gagaaataca atatcttgtc ttcttccgag gagcttactg
    23641 agctttcaga tgaaatcaca cgcttattaa gtgatgatga aatcaatgca aacagtctga
    23701 tttataaagc gttacgcaat gcagaaaact tggctgaggt tgatagccaa tatcagggca
    23761 ttttagatat gcttaatgag gccctgattc agattcaaga agcaagctcc gaagtggctc
    23821 aattagccag taaaattgaa caagatccgg aattactaca ggagctggat aatagaattg
    23881 cacaaactat atcgttagca cgcaaacacc atattcaacc gaatgaatta tggcaatatc
    23941 acgcgacatt aaaagcagaa ctacaggaat tactggattt tgaagataat gaagaacaac
    24001 tcattcaaaa tgaaaaacaa gcttaccaag agtgtataac attagcagaa gaaatttacc
    24061 aaaaacgtct agatgccaca cataagctct ctgaacaagt aacaaaacaa attaaacact
    24121 tagcaatgga aaacggtgag ttctttattc atatagaaca taatcttgaa aaaatgtctg
    24181 caaatggtgc tgactatgtc gagtttaatt tacgcagcaa tttaggacaa caaccccaac
    24241 cactggcaaa aattgcttct ggtggtgagc tatctcgcat ttctctggca gtacaagtgc
    24301 ttaccgcaaa taaactttct acgccaacta ttatttttga tgaagttgat gttgggatta
    24361 gtggctctgc tgccactaca gtcggaaagc tactgcgtaa gctaggcgaa aaatgccaag
    24421 tattatgtgt aacccattta cctcaagtgg caagttacgg caaccagcag tttaatgtac
    24481 aaaaatatgt agaaaataat caaactgaaa cgcaaatgac attactcaca gaagcagagc
    24541 gtattcacgc cttggctcga ctattaggcg gaagcgaaat caccgaaacg gttttagcta
    24601 atgcaaaaga aatgctaaat ttagcgaaaa ataacgaata gccaaaaaga aaaatcgcat
    24661 caatgaatat tgatgcgatt atgaatttgg tggaggtaaa cgggatcgaa ccgatgacct
    24721 cttgcatgcc atgcaagcgc tctcccaact gagctatacc cccttaatac aagcggaata
    24781 atatgctttc cgcttgaaga tgtcaatggc tttaatcaag caaggtgttg attgattaaa
    24841 aactagctat tcgcctgaat aaactcaatc gctttttgta agcgagctaa ggttctttct
    24901 ttaccgacta atttggcggt gatatccatt gacggcgatt gcccacttcc tgttaccgct
    24961 aaacggaacg gcataccgac tttgcccata ccaatttcca gctcggcagc ggtttggttc
    25021 attgcctcgt ggatattttc caccgtccag tcattgcaag cggtcaattt ttccaataat
    25081 tttgcaagtg gagcaacggc ttcggctttg aagtttttag cagcagcttt ttcgtcgtaa
    25141 gccttaaatt cttgatagaa atagcggctg ctttcggcaa gctcttttaa ggttttgcaa
    25201 cgttcgccca gtacagggat aatttcttcc aattttggac cgcttgtgaa atcaatgcct
    25261 tgagtttgca tatgccattc aagatgtttt gccacataac ttggggcaag actgcggata
    25321 tagtgttggt tcaaccattg taatttttca gtgttaaatg cacttgccga tttactgact
    25381 gaatgaatgt cgaacagctc gatcatttcg tcacgagaga aaatctcttg gtcgccgtgt
    25441 ccccagccta aacgcacaag gtagttaatt aaggcttccg gtagatagcc gtcatcacga
    25501 tattgcatta cgctcaccgc accgtggcgt ttggagagtt tttgcccgtc atcgccgttg
    25561 atcattgaaa cgtgggcgta ggttgggatt ggtgctccta atgctttcaa aatgttgatt
    25621 tggcgtggtg tattgttgat atggtcttca ccccgcacaa cgtgagtaat gcccatatcc
    25681 cagtcgtcca ccaccacaca gaaattgtag gtcggcgagc cgtcagtacg gcgaataatc
    25741 aagtcatcta attcgctatt ggcgatttca attcgcccac gcaccgcatc gtcaaatact
    25801 accgagcctt cggtcgggtt tttgaaacgc acaacatgtg gttggctcgg gtcgttttgc
    25861 ggattgtgta agcagtgctg atcgtatttc gctttctctt tatttgcttc ttgctctgca
    25921 cgtacttcgt ctaaacgttc tttcgagcag tagcaacggt atgccgtgcc ggcttctaac
    25981 atttggtcga tcacttggtt atagcgatcg aaacgcttgg tttgaaagta tgggccgtgt
    26041 tcccacgcca aatccagcca ttccataccc tctaaaatag cggcggttgc ctcaggggtt
    26101 gagcgttcaa gatcggtatc ttcaatacgt aacacaaatt caccatcatt atgcttagca
    26161 tataaccaag agtagagcgc ggtcctcgcc ccacctacgt gcaagtagcc agttgggcta
    26221 ggtgcaaaac gggtacggac ttttacattc ggatctaagg ggaaaagggt ttcaattttc
    26281 attttatatt gcctaattga tgattcttaa gaaaaacttg tctattttac tacgcttgag
    26341 ggtgaatcat agtaaaaaat taaatttgcg gggtaaaaaa tcagcaaacg gggtaaaaag
    26401 aacaaaaagg gtttgacgaa acagcaaaaa tctctataat tcacttccac aacagcgggc
    26461 gattagctca gttgggagag cacctccctt acaaggaggg ggtcactggt tcgagaccgg
    26521 tatcgcccac cacttcaact taagtgtttc gttgttgtat cacaatctaa ttttgaaaac
    26581 gggcgattag ctcagttggg agagcacctc ccttacaagg agggggtcac tggttcgaga
    26641 ccggtatcgc ccaccacttc aacttaagtg tttcgttttc aaattccctt tgattttaag
    26701 tctcaagtgg gcgattagct cagttgggag agcacctccc ttacaaggag ggggtcactg
    26761 gttcgagacc ggtatcgccc accacttaag actaaaatca taaacttcaa atggcgattt
    26821 ttcgtatctg aagggcgatt agctcagttg ggagagcacc tcccttacaa ggagggggtc
    26881 actggttcga gaccggtatc gcccaccatc tatttagtat caaagcctaa aacttatatc
    26941 ataatctaat aaccccttta aagtcataac taaaaaggga aaataaattc agatggcctg
    27001 ttgcatctgc ataaatgcct ttctacgtgc agaaattaat ctttttctat ctttaatttg
    27061 cttaatttga cgcaggcgta atttccttgt cagtagggat ttctttttct tcaattttct
    27121 cataagaaga attctcctgt tttatttgac catctggtaa attttcttgt tcttgcatct
    27181 tttgctcttc aactcgttga taattaataa tactaccata ataacgccgt atattttcaa
    27241 catactgtaa tgcttcatat cctcgagcat agccgtattt tagattagca taataacgtt
    27301 tttccgcaag caatggcaga ttctttttaa catcaagcca attatccgga tcaccaccaa
    27361 gttgttttgt taatcgacga agatccaaca agtgccccaa tcccatatta tacgctgcta
    27421 ggctatacca aattctatct gcttgaggaa tagtttccgg catttgtctc attagcatat
    27481 gtaaatattc agatcccgct ttgatacttt gtgcagggtt agtcctatca gaaattttca
    27541 ttctatctgc cgtatctttt gtcagcatca taattcccct cactccggtt ggagaagttg
    27601 cattaggatc ccaatgagac tcctgatagg cgatagccgc cagcatttgc cattctaatt
    27661 cacctttatg tgcccgaaaa aggggttcat atttaggtaa aatagtttta attgcattca
    27721 aatagctctg aatatcaaca taatcaaact tagctaaatg attaaaatat ttctcttcta
    27781 ttcttgatat cagcccagtt tccatagaat aagacataaa atccagcagc acagattgca
    27841 gttcactata agaactattt gctaaatacc ataacactgg gttttcatca gttaaatcaa
    27901 accctacggc taaattagga ttaatatgct gtgcagcaga aatatcaacc gacattgcaa
    27961 ttgtatgtga aatttcacct tgtgcgactt ttaacaatag ctcttcttgt gtaaatttat
    28021 ccgagatctg ccattttagt tccggattat ccaccttaag ctgatttaat attggaatta
    28081 ccgcagaacc ggctggaata atcacatttt cccgcaaatc ggaaagtcga tatggtctag
    28141 cacttccctt tttataaaca agctgccaag aagccgaata ataggaagga cctatctgaa
    28201 attcatcgtt taattcagaa tggtaaagca gcccagcggc agcaatatca acatcattat
    28261 ttcttaaggc ctcaaacaat ttctcgctac tatcataagt tttaatatca agattgacct
    28321 ttaaatattg agcaaaggct gttgctaaat catattcaat gccacttttt ccttcaggac
    28381 caacaaagta agaaagtgga tggttgatca ttccaacctt taacgttttg ctttgctgaa
    28441 tttgtgtata atgatttgct tctgaatgaa tgattttttg ccaaggaaaa atcatatccc
    28501 aagcccacag taacaatgct acggcaataa aaaggcgagc aattaatcct ttcaatttaa
    28561 aatcctcatt atttcaagct aagcattaag cctatctgaa attacaa
//
LOCUS       DANMGB010000010        28358 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.010, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000010 DANMGB010000000
VERSION     DANMGB010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28358
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.010"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            126..2402
                     /gene="gshAB"
                     /locus_tag="PXG19_000342"
     CDS             126..2402
                     /gene="gshAB"
                     /locus_tag="PXG19_000342"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL6065675.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKQKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
     gene            2724..3701
                     /gene="manX"
                     /locus_tag="PXG19_000343"
     CDS             2724..3701
                     /gene="manX"
                     /locus_tag="PXG19_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL6065676.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            3713..4513
                     /locus_tag="PXG19_000344"
     CDS             3713..4513
                     /locus_tag="PXG19_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL6065677.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            4527..5363
                     /locus_tag="PXG19_000345"
     CDS             4527..5363
                     /locus_tag="PXG19_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL6065678.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            5456..5941
                     /locus_tag="PXG19_000346"
     CDS             5456..5941
                     /locus_tag="PXG19_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL6065679.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(6027..6818)
                     /gene="tpiA"
                     /locus_tag="PXG19_000347"
     CDS             complement(6027..6818)
                     /gene="tpiA"
                     /locus_tag="PXG19_000347"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL6065680.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            6978..7892
                     /locus_tag="PXG19_000348"
     CDS             6978..7892
                     /locus_tag="PXG19_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL6065681.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            8063..8851
                     /gene="surE"
                     /locus_tag="PXG19_000349"
     CDS             8063..8851
                     /gene="surE"
                     /locus_tag="PXG19_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL6065682.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            8838..9422
                     /locus_tag="PXG19_000350"
     CDS             8838..9422
                     /locus_tag="PXG19_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6065683.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            9440..9940
                     /locus_tag="PXG19_000351"
     CDS             9440..9940
                     /locus_tag="PXG19_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL6065684.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            9953..10153
                     /locus_tag="PXG19_000352"
     CDS             9953..10153
                     /locus_tag="PXG19_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065685.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            10172..11452
                     /locus_tag="PXG19_000353"
     CDS             10172..11452
                     /locus_tag="PXG19_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6065686.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            11693..11884
                     /locus_tag="PXG19_000354"
     CDS             11693..11884
                     /locus_tag="PXG19_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065687.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            11877..12443
                     /locus_tag="PXG19_000355"
     CDS             11877..12443
                     /locus_tag="PXG19_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL6065688.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(12490..12720)
                     /gene="acpP"
                     /locus_tag="PXG19_000356"
     CDS             complement(12490..12720)
                     /gene="acpP"
                     /locus_tag="PXG19_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL6065689.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(12907..13584)
                     /gene="rpe"
                     /locus_tag="PXG19_000357"
     CDS             complement(12907..13584)
                     /gene="rpe"
                     /locus_tag="PXG19_000357"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL6065690.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
     gene            13778..14050
                     /locus_tag="PXG19_000358"
     CDS             13778..14050
                     /locus_tag="PXG19_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL6065691.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            14059..14184
                     /gene="ykgO"
                     /locus_tag="PXG19_000359"
     CDS             14059..14184
                     /gene="ykgO"
                     /locus_tag="PXG19_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL6065692.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            14364..15137
                     /locus_tag="PXG19_000360"
     CDS             14364..15137
                     /locus_tag="PXG19_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6065693.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            15220..15936
                     /locus_tag="PXG19_000361"
     CDS             15220..15936
                     /locus_tag="PXG19_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL6065694.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            15946..16698
                     /locus_tag="PXG19_000362"
     CDS             15946..16698
                     /locus_tag="PXG19_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL6065695.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(16914..17447)
                     /locus_tag="PXG19_000363"
     CDS             complement(16914..17447)
                     /locus_tag="PXG19_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL6065696.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(17553..17894)
                     /locus_tag="PXG19_000364"
     CDS             complement(17553..17894)
                     /locus_tag="PXG19_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL6065697.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(17918..18667)
                     /gene="trmB"
                     /locus_tag="PXG19_000365"
     CDS             complement(17918..18667)
                     /gene="trmB"
                     /locus_tag="PXG19_000365"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL6065698.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(18677..19627)
                     /locus_tag="PXG19_000366"
     CDS             complement(18677..19627)
                     /locus_tag="PXG19_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL6065699.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(19773..20792)
                     /gene="hemB"
                     /locus_tag="PXG19_000367"
     CDS             complement(19773..20792)
                     /gene="hemB"
                     /locus_tag="PXG19_000367"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL6065700.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(20873..21628)
                     /gene="tatC"
                     /locus_tag="PXG19_000368"
     CDS             complement(20873..21628)
                     /gene="tatC"
                     /locus_tag="PXG19_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL6065701.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(21615..22259)
                     /gene="tatB"
                     /locus_tag="PXG19_000369"
     CDS             complement(21615..22259)
                     /gene="tatB"
                     /locus_tag="PXG19_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL6065702.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(22263..22484)
                     /gene="tatA"
                     /locus_tag="PXG19_000370"
     CDS             complement(22263..22484)
                     /gene="tatA"
                     /locus_tag="PXG19_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL6065703.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(22595..24232)
                     /gene="ubiB"
                     /locus_tag="PXG19_000371"
     CDS             complement(22595..24232)
                     /gene="ubiB"
                     /locus_tag="PXG19_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL6065704.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(24306..25283)
                     /locus_tag="PXG19_000372"
     CDS             complement(24306..25283)
                     /locus_tag="PXG19_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6065705.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(25444..26091)
                     /locus_tag="PXG19_000373"
     CDS             complement(25444..26091)
                     /locus_tag="PXG19_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL6065706.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(26282..27034)
                     /gene="ubiE"
                     /locus_tag="PXG19_000374"
     CDS             complement(26282..27034)
                     /gene="ubiE"
                     /locus_tag="PXG19_000374"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL6065707.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            27379..28332
                     /gene="corA"
                     /locus_tag="PXG19_000375"
     CDS             27379..28332
                     /gene="corA"
                     /locus_tag="PXG19_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL6065708.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
BASE COUNT         8252 a         6085 c         5737 g         8284 t
ORIGIN      
        1 gaagcagtat ttctgttata accaaatcat ctacttcatt ccaataaact aaaacccact
       61 atttcactaa gtctttcatt tgtgttattg tgccgataca tttttttgac tacaaaggat
      121 agatgatgaa actacaaaaa cttatccgag aaaatcattt agcattgctg tttcaacaag
      181 ggaattttgg gcttgagaaa gagagccaac gggttgatcg caacggcaat atcgttacta
      241 ctccccaccc tgccgtattc ggtaatcgct cttaccaccc ttatattcaa accgattttg
      301 ccgaaagtca gctagagtta atcactcccc cgaatgctaa attagaagac agttttcgtt
      361 ggctctctgc tattcacgaa gtggtattgc gttcgttgcc agaggaggaa tatatcttcc
      421 ctctcagtat gccggcaggc ttgccgccgg aagagcaaat tcaagaagca caatttgaca
      481 accctgaaga tgtgcaatat cgccaacacc tttccaaaaa ctatgggaaa tataagcaaa
      541 tggtaagcgg cgtgcattat aattttcaac tttcaacgga atttgtcgaa aaagcctttg
      601 ctttacaaac ggaatatagc gagctgaaag ccttccaaaa cgcactttat atgaagttag
      661 ctaataactt tttgcgttat caatggattt tgctctattt attggctgcc acgcctacgg
      721 tggaatcgca atatttttat gaaaaatcac cgcttgcgag agggcaactt gtccgcagct
      781 tgcgttcaag cccttatggt tatgtgaatt cggaaaaagt ggtggttaat cacgacagct
      841 tagaaagcta tgttgaaagc cttgaagcca atgttgccaa cggattatta attgccgaaa
      901 aagaattcta ttccaatgtg cgtttacgag ggggcaaaaa agcccgtgag ctattggaaa
      961 acggtgtgaa atacgccgaa ttccgtttat ttgatttaaa ccctttcgcc ccttacggca
     1021 ttgagctgaa tgatgccaaa tttatccatt atttcttact cggtatgctt tggctggagg
     1081 aaacaagcgg tcaaaaagag gtcgaaatcg gcaaacagaa actttaccaa gtcgcacttg
     1141 aagatccaag aacagaaacc gctttccgtg ccgaaggtga agccatttta aatcaacttt
     1201 tagcgatgct tgaagaatta tctgccggtc aggaaagcct agatttggtg cgggaaaaat
     1261 tagctcaatt tgctgatcca agcaaaaccc tgaacggacg tttaattgcc gcaatagagg
     1321 aagtcggcag ttataaagca ttgggggcta aattggctca aacctataag gcacaagcct
     1381 ttgagcgttt ttatgcgtta tcggcatttg ataatatgga actttccact caagccctgt
     1441 tttttgattt gatccaacaa gggattgagg tggaagtact ggacgaaaac gatcaattcc
     1501 tcgccctaaa atttggcgat catttggaat atgtgaaaaa cggcaatatg accagccgag
     1561 atcaatacat ttcaccgctg attatggaaa acaaagtggt gacgaaaaaa gtattggcaa
     1621 aagccggctt taacgtgccg aaaagcgttg aatttaccaa ccttgaacag gctgtggcac
     1681 attatccgct atttgaaggc aaagcggtgg tgattaagcc gaaatcgact aactatggtt
     1741 tagggattac catcttccaa caagcggtca aaaatcgaga agattttgca aaagcggttg
     1801 aaattgcgtt ccgtgaagac aaagaggtga tggtggaaga ctatttagtc ggtactgaat
     1861 accgcttctt tgtactgggc gatgaaaccc ttgcggtgtt actgcgtgta ccggcgaatg
     1921 tagtgggaga tggcattcac agtgtaaaag agctggtgga gcgtaaaaat gacgatccgc
     1981 tacgtggcga tggctctcgt agcccgttga aaaaaattgc cttaggtgaa attgagcagt
     2041 tacaacttaa agagcaaggc ttaaccgtag attccgtacc ggcgaaaggt caaacagttc
     2101 aactgcgtgc caattccaac atcagcaccg gcggcgattc gattgatatg accgaccaaa
     2161 tgcacgaaag ctatagacaa attgcagtgg gaattgctca ggcaatgggg gctaaagtgt
     2221 gtggggtgga tttgatcatt cctgatctca ccaaacctgc cgagccaaat ttaagctctt
     2281 ggggcgtcat tgaggcaaac ttcaacccaa tgatgatgat gcacattttc ccttaccaag
     2341 gcaaatcccg ccgtttaacc aaagcggtaa tcaaaatgct gtttcctgag ataggcaatt
     2401 aaattttctc tctatacctc ttttaaggag aatttactca agaattctcc ttaatttatt
     2461 tctaaagttt tactccaatt aaatttcact ttgtgcaaaa cactccaaaa gaagaatttt
     2521 tttgtataag taaaaacgat cgaaaatatc tccgttaaca aaatgttata aagaaaagac
     2581 atttagccca atttatagcc aaaaaagctt attgtctgtg atatagatca cacttttgta
     2641 attaatacat tgtgtgaaat aattatcata ttaaaatctc gccccagtaa ataaacaact
     2701 taaaaaaccg caaggagtaa caaatgagca ttgctattat catagcaacc catggtgttg
     2761 ctgcagagca acttctcaaa acaactgaga tgttgattgg tgaacaagaa gatgttgctt
     2821 acattgactt tgttcccggc gaaaatgcag aaacgattat gggcaaatat caagcattgg
     2881 ttgaaggtcc actatcacac tgtgatcaag tgctgttttt ggtggatatg tggggaggaa
     2941 gcccattcaa cgccgcaaac cgattccaag atggaaaatc gggtatggat gttgttgcgg
     3001 gtgtgaatat tcctatgtta gtgaacacct gtatggctcg tgatgatgtg gagtcgttgg
     3061 aagaattggt ggaagtcgca ttagaagccg gctcaaccgg gattcgttca cttaatcacc
     3121 aacctgaagt ggctgaggtg caaaccgcta ctcctgcaca agaaactgca gctgttcaac
     3181 agcctgaaat tgttgatgac ggacgtcgta tgaccattgc ccttgcccgt attgatgacc
     3241 gcttgattca cggtcaagtt gcgacggttt ggacaaaaga aagtaaagtc aatcgcatta
     3301 ttgtggtaaa cgaaggtgta gcaaaagata gtgtacgaac tactatgcta aaaagtgttg
     3361 ctcctcttgg cgtaacggct cacgttgttg atgtacctaa aatgattcgt gtctataaca
     3421 accctgaata tgccgatgat cgtgtaatgt tactctttac caacccaagt gatgtcttag
     3481 ccttaattga aggcggtgta ccactcaata gcattaacgt gggcggtatt tcgcataaag
     3541 aagggaaaca aatggttagc cattctgtgg cggttgatca aaatgatatt gatgccttca
     3601 aagcaattga tgcgaaaggc gttgaattag aagtacgcaa agtctcaagc gatagccgtc
     3661 agtatatgat ggatttattg aaaaaacata acttaatcta aaggaaatta ctatggaact
     3721 ttcagcatta caaattgtgc ttttattcct cgttgcctgt atctcaggta tgggctcaat
     3781 tcttgatgaa tggcaaaccc accgtccgtt aattgcctgt acgatgatag gcttagtgct
     3841 tggtgatgtg actaccggcg ttattgttgg tggctcatta gagttattag ctttaggttg
     3901 gatgaacatc ggtgccgctg ttgcaccaga tgcggcatta gcctctattg tctcaaccat
     3961 tttagtcatt gtaggtcgtc aagatatttc aactggtatc gccatcgcta ttccgcttgc
     4021 agctgccggt caagtattaa cctatgttgt gcgtgcaatc accgtaggtt tccaacacgc
     4081 agcagataaa tcaattgaag acggtaactt aagccgttta gactggttac atcgtggtgc
     4141 tttattgctt caagcaatgc gtattgccat tccggcatta attgtggcat taacagcagg
     4201 tacagatgcg gttcaaacaa tgttaaatgc cattcctgaa gtggttacaa ccgggctgaa
     4261 aattgccggt ggcttcatcg ccgtggtggg ttatgcgatg gtgatcaata tgatgcgtgc
     4321 aggtcattta atgccgttct tcttcgcagg ctttgtaatt gcaggcttta ccgatttcaa
     4381 tcttgttgcc cttggggtat taggtacggt tattgcaatg gtttatatcc atatgcaccc
     4441 taaatataac aaaagccaac aggtagtggt ggcagctgca ccaaaaaatg atttagacaa
     4501 ccgtttagac taagagggca tttaaaatga caactgaaat caaaaaagta acaaaaagcg
     4561 atttgaatgc cgttgtacgt cgttcaaact tattccaagg ttcgtggaac tttgagcgta
     4621 tgcaggctct tggttttgcg tatgcgatgg taccggttat caaacgttta tatccggatc
     4681 caaatggccc gggtcgcaaa gaagcaatta aacgccattc tgagttcttt aacacccagc
     4741 cattcgtcgg tgcaccgatt ttaggggtaa ccattgctat ggaagaagaa cgtgccaacg
     4801 gtaaagaaat cgacaatgcc gcaattaacg gtattaaagt tggtttaatg ggaccattag
     4861 ccggtgtggg tgacccaatt ttctggggaa ctgttcgccc tgtatttgcc gcattaggag
     4921 caggcttagc cttaaaaggt gagcttttag gcccaatcct gtttttcgcc ttatttaaca
     4981 tagtgcgttt agccgcacgc tattatggcg tagtgtatgg ctataaaaaa gggttagatg
     5041 ttgtacaaga tatgagcggc ggtttattgc aaaaattaac cgaaggtgct tcaatcttag
     5101 gtctgtttat tatgggggca ttggtacaaa aatggacgag cattaacgtt ccgcttgtgc
     5161 tttcaaccat tcaaaaacaa gacggtacca tcgaagttac cacagtgcaa agcattctcg
     5221 acagcttaat gccgggccta ctcccattat tattaacctt tgcttgtatg tggttacttc
     5281 gtaatcgagt aaatgctatc tggattatcc tcggtttctt tgttatcggt atcctcggcg
     5341 ctgcaaccgg tgcattagct taattgcaaa attttctgtg aaaacgaccg cttgaacttg
     5401 aacattcaag cggtttttta tacgctttag cccaaataaa ttcacttgct taattatgac
     5461 caataccatc cttattctct ttattttact tggcttagta ttcgccattt atgaccaagt
     5521 ttttatgcac aaactcaaag gcacaacctt actggaaatc cgtttaaaaa agcaaaaaac
     5581 aattgatact tggttattga ttggtttaat cgtcttgtca attagctatg gcgtacaaaa
     5641 tcaaatccag ccttttacac tttacctgct ggcgacttgc attattctgt cggtctatct
     5701 cgcctttttc cgttcccctc gcttgttgtt aaaacagcac ggttttttct ttgcgaatgt
     5761 cttttttaat tacgacaaga tttatcaagt caatattgca gaaggaaaag cagacgaaaa
     5821 aattttggta attgatttac atagcggaag aaggctgctt gcctatgttg aaaatgcgga
     5881 agatcttcaa ccggtagtgg atttttttgg cggttataaa aaggaaagtg agcagaaata
     5941 gtttgcgaac aaaacacaag cggtcatttt tccctgaaat tttgcaaaaa actgaggaaa
     6001 aatgaccgct tgtaaaatcg gttaaattag gctttagcag ccgctgccgc tttaacgatc
     6061 accgcaaaag caggcgcttt aagtgaaaca ccgcctacta atgcaccgtc aatatccggt
     6121 tgagtgaata actctgctgc attggcatcg tttacagagc caccgtattg aatgatcact
     6181 tggtcagcca ctgcttgcga tttagctgca atatggtcac gaataaattt atgcactgct
     6241 tgtgcttgtg ccggagtcgc tgatttgccg gtaccgattg cccaaattgg ttcgtaagca
     6301 ataactgcac cgttgaatgc ttccacaccg tgcgcgttga tgaccgcatc aatttgtctt
     6361 gcacacactt cttcagtttt acctgcttca ttttcggctt cagattcacc gatacataat
     6421 acaggcacta agccggcatc ttttaatact ttgaattttt gagcaataaa ttcatcgctt
     6481 tctttgtggt aagtacggcg ttctgaatgc ccgataataa tatattttgc cccaaactct
     6541 tttaacattt caggtgaaat atcaccggtg aatgcccctt ttacgttcac atcaacgttt
     6601 tgtgaaccaa gtgcgattaa gcctttatca ctgcaaccac agccacaacc ggcaagtgat
     6661 gcttcagcgt gtgccaaata catcaccggt ggagcgattg ctacatcaca gccttcaacg
     6721 ccatgtaatt ctgcttttaa atctgcaatt aaggttttag taaacgcttt atcaccgttt
     6781 aatttccagt tacccattac aagtggacga cgtgccattt tgtttctcct atatgaagtt
     6841 gaacttaaat ataaacgttg caaactatac caaattttaa tgtcgttttg ttgtttttat
     6901 tttgcttttt ctgatctaga tcgaaaggtt taacgtataa tgccgaaatc ttatttttta
     6961 tgttattcga gaagtgaatg aaactgaatt atttatactc tcctcctcaa gctgttgggc
     7021 gactaaaagc cgaatatgca gactttattg tgcgtgaaga actgggctac gaactagccg
     7081 gcgaagggga atttgtggcg gttaaaatcc gcaaaaccaa cgccagcacg ctgtttgtgg
     7141 gggaaaagtt agccaaattt gtcggtattt ccgagcgtga aatgagttat gcaggcttaa
     7201 aggaccgcca caaccgcaaa attcgtgttg gttcgctcgc cggcaatcat tttgaattat
     7261 tgctacgtga tgtagcagaa agcgaagagt tgatttaccg tttgcaacag ttgcaagcgg
     7321 tcggatttcc caattatttt accgaacaac gtttcgggcg agacggacat aacctgactc
     7381 aagccttgcg ttgggcaaac ggggaaatta gcgtgaaaga tcgcaaaaaa cgcagtttct
     7441 acctttccgc tgcccgctcg gaagtgttta atttagtggt ttcacagcgg attaatgact
     7501 gcttaaccca aaaaatcttg gagaatgatt acgttcaact tgccggctct aacagctttt
     7561 tctgcgtgaa atcggacgaa attgctgaaa ctcaagcccg tttagcacag caagatctac
     7621 ttctcaccgc tccgctgata ggcgaaagat cgcttgaatt agaatgcaat cctgctgaaa
     7681 aagccatcat agagcaacac gctcaattgg ttgccttaat gcaaaaagag cgtatggcag
     7741 ccgctcggcg agcaatgctt tgtaagccac aaaatctgga atggcaattt gaacaagaag
     7801 ggctacggtt aaaattcttt ttagattcag gcagttatgc cactgcactg gtgcgagagt
     7861 taattctgct taccgaagag agcgaagctt agtccataac acataacaag cggtaagatt
     7921 ttaatcattt tttgcaattt gcaaaacttt aacaaaatct taccgctttt tgcactttta
     7981 gactaaaaaa actgtcgaaa aattgttaga attgcgatct ttgtatttag agtctatcaa
     8041 gatgtaagat ctaaaggaaa ttatgcgaat tttaattagt aatgacgatg gttttcacgc
     8101 tgtcggcatt caaactttag ccaaagcctt gcgagatgca ggccatatcg tcaccattat
     8161 tgcaccggat cgtaaccgca gtgcagcttc aagctgccta accttagtag atccacttcg
     8221 ggtgcatcgt tttgatgaat ataattatgc ggtgatcgcc ggcacacctg ccgattgcgt
     8281 gcatttagcc ttaaacggct tgtttgacgg caaatttgca gaaaaatttg atttggtggt
     8341 ctccggcatt aatcacgggg caaatttagg cgatgatgtg gtttactccg gtacggtagc
     8401 ggcagcattg gaaggccgcc acttgccatt accaagtatt gcagtatcac tggttgggcg
     8461 taaacactct tcgtttttag acggtgaaaa tcattttgga acggcagcac aggtagtgtt
     8521 agatttattg gaaaaaatgg aaacgcaacg ttttccatca aaccacgttc tcaatgttaa
     8581 tgtgccgaat ttaccttatt cagagctaaa aggcacaatg atcacccgct taggtgaacg
     8641 ttcacccgct gcggaaattg tgaagcaaaa agatcctcgt aatgctgatg tctattggat
     8701 tggtgtaaca ggtgaaccac tggatgaaag ttttggtact gatttttatg cattaaaccg
     8761 agattgcgtt tctatcacac caattcaagt ggatatgacc gctcataaaa cgatagcaac
     8821 cttaaaaggc atttttaatg aaactgtttg aaacaattta tgacaaaaca atgcagtggt
     8881 ctaagcaccg cttcgctgcc ttttggttga gttttgtcag ttttatcgag gcgatctttt
     8941 tcccgattcc gccggatgtg atgttgattc cgatgtcgat ggcaaaaccg caaaatgcgt
     9001 ttaaatatgc agtttacact acccttgctt cggttgccgg tggtgttatt ggttatttta
     9061 ttggcttata tgctaccgat tgggtgcaag gcgtcatcgc aaattgggga atgcaagcaa
     9121 actttgataa agcaaaattg tggtttgaaa cttggggtgt cgcggtagta tttttagccg
     9181 gtttttcgcc gattccctat aaggtattta ccatctgtgc cggtgtaatg cagatggcgt
     9241 tcttcccgtt tgtgattact gctgcgattt ctcgctttgc ccgttttatt ttggtagcaa
     9301 aactctctgc ttggggtggc aaaaaatatg aacaaaaaat tcgccgctca attgaattaa
     9361 ttggttgggg aacaatcgtt ttagccgttg ttgcctatat aatttataca ttaatgaaat
     9421 aaattttaag gatataaaaa tgaaaaaatc actttttgtt ttatctctga tttcttttgc
     9481 tttagtgggt tgttcaagca attcgggtga atccacttct gcggtagaaa caacagaagc
     9541 aaatgcaact tggcaatcag cagatagcat tcaaactgca ccaatgcctg cctcgatgaa
     9601 tcaacctatt gccactcagc caacctatca gcagccgact tactctgcac cacaaccaat
     9661 ttcggcagca ccagcaccaa tgcctgtttc aagtggtagt gatagctctc aagttgaaac
     9721 agtagggaac tgccaagtgg tgcgtgatgc gaataatgct cctatctatt cacaaattac
     9781 caaaggctgc tacacagaaa gtcactatac ggtaggtaaa agtgatacgc tttatttaat
     9841 cggttatcta accggcacca atgccaatca aattgcgcag ctaaatggtt taaataccgg
     9901 ctctccactg aaagtcgggc aagtcttacg tgttcgttaa taggcagaga aaatgaacag
     9961 aaccctttta gcatttgcaa tttcttgtgc atttttgacc gcttgtagct cgcctactca
    10021 gccacaagtt gaagatccaa atatgttacc tgcaggcaca ttacaaccga ttgaaggctc
    10081 aggcgcaagc caagacagtt acagttggcc gtctgatatt caatcaacgt caatgcctga
    10141 cagtatgaaa taattttagg acaatcattt aatgaaaaaa caatttattc ttctcccttt
    10201 agtctctgct gttttggcag cctgttcttc aaacaatcca gcaccggtgg tgaatgcttc
    10261 cggtaataac gaattaagcc cgggcgtgat gcagcctgtt gatgtgagtg caggtgcaat
    10321 taattcaagc ggtggctggc agtctgatat tcaatctgca ccaatgccaa gctcgatgaa
    10381 taccactccg gtgcaaacaa tgccccagcc ggtttcagtg ccacaacctg tggcgactgt
    10441 accgcagcca attaccaatc cggtgattac cgaacaacca ccacagccga caaccacgac
    10501 caaaatcgtg aaaaaaacga aaacggtcga gaaaaaagtg gatcaaaatt ttgagatccc
    10561 gcgtgatgcc aacaatgccc caatgtacaa ccaaattcaa aaagggttct acgatggctc
    10621 tacctatacc gtacgcaaag gcgacacaat gtttttgatt gcctatattg tgggtaaaga
    10681 tgtaaaagaa atcgccgctc ttaataatat gagcgaacct taccaattaa gcgtagggca
    10741 aaaactcaaa accggcaaat ctgcaacgga aactattacc gtggaagaaa aagtcaccgt
    10801 accggttgaa ccacaaatta cctaccaaca aggtgcaaac ggcacaacct atgcttctgg
    10861 cggtaatatt actgggccgg taaaagcagg cacagccaac gctgatgtca cgccggttaa
    10921 taacggtatt aaagcaacaa ctgcaactgc tccggcagta actgcttctg tcggtacagt
    10981 aaatgcaaca gaggaccgta ccgcctccac cattcgtgct atagatggca cagcaagtgg
    11041 tgccgtacaa agtagtaata ctgtttctgc accagcttca tcaattaaat ggcaatggcc
    11101 aaccagcggg cgtgtaattt caggcttctc ctcagcagaa ggaggtaata aaggcattga
    11161 tattgccggc aataaaggac aagatgtacg tgctgccgcc gcaggtaaag tggtatatgc
    11221 cggtaatgcc ttgcagggtt acggtaactt aatcatcatc aaacataccg atgatttctt
    11281 aagtgcttat gcacacaaca atactattga agttgatgag caagaaacgg tgaaagccgg
    11341 tcagaaaatc gcgactttag gtagtacagg aaccaatacg aataaattac attttgaaat
    11401 tcgttacaaa ggaaaatctg tcgatccggc tcgttattta ccaagaaaat aagagtaact
    11461 ttttagcata atccgaccgc ttgtgtacta caagcggtca atttttagga aaattatgca
    11521 aatgaaaaaa tatatcgcac acatgataag ttcgttactg ctgatagttt gttcggacta
    11581 ccgagcaaca ccaactagcc caagcgatgc ttacacttgc tctccttctt ttcgctactc
    11641 tttcttaaaa aaaacgtgca tacctttatt cagtatagcc gacattcaat tattggatcc
    11701 aaccgagcct tcacatcgca tttatatttt gttatctgaa gatcgatttc aagccgaagt
    11761 cttctcaacg aagctctctg aatcttctat gttattggag gcggttaaag gaggctatat
    11821 ttcaaaagac ggaaaagttc gtttactcaa aaaagctgaa ggttggaaaa tttactatga
    11881 gtgagactaa aatacgttgt gattggtgta aaagcagtga aatttatatg aaatatcacg
    11941 acgaagaatg gggaaaaccg gagtttgaca gcctcaaact gtttgagaaa atctgccttg
    12001 aagggcaaca agccggactt tcttggatta cggtgttgaa aaaacgggaa gcctaccgcc
    12061 aagcattcca tcagtttaat cctgaaaaaa ttgccaaaat gggtgaagaa gaaattgatt
    12121 tgttaatgca aaacactagc ttaatccacc accgagcaaa gttagaagcc attataaaaa
    12181 atgcgaaagc ttatatcaca atgcagcaaa atggcgaaga cttcagtcgg tttatttggt
    12241 cttttgtgaa ttatcagccg caaattaatg atgtaccaac acttgaagct gttcctgctc
    12301 atacagaaac ctcaaaagca atgtcaaaag cgttgaaaaa acgtgggttt gtgtttgtag
    12361 gcgagactac ttgctatgct tttatgcagt caatggggct ggttaatgac catttgaata
    12421 attgcgtgtt caaacataaa taaacacaaa aaattaggcg accatttggt cgcctaacat
    12481 taattcagat tattgattgt tttgaacgta atcaattgct gattgaactg tagtaatttt
    12541 ttcagcttct tcatctggaa tttcgatatc gaattcttct tctaaagcca ttactaattc
    12601 aacagtgtct aaagaatctg cacctaaatc ttcaatgaat gaagcttctg gttttacatc
    12661 ttctgctttc gcgccaagtt gatcaacaat gatttttttt acgcgttctt caatgctcat
    12721 tttgtttttc ctatagtgaa tatcgcataa gtgcgagagt taaatagtgt aatcgaaata
    12781 agtttaaata caacctttta taaaaaggtc aaaccagact attcctatac accagaatat
    12841 atctgttttt ccattctatc attatgtttg tgtttaatct atagagataa atcaaatttc
    12901 atttgattac cctactttcc gtaattcatc tcgcatttgt gcaatcactg cttgataatc
    12961 tggctggtca aaaatcgcag aacctgccac aaacatatct gctcctgcgg ctgcaatgtc
    13021 ggcaatgtta tttattttca caccaccatc aacctctaag cgaatgttat aaccgctctc
    13081 atcaatacga cgacggactt ctttcaattt atctaaggtg gacggaataa atgattgtcc
    13141 gccaaagccc ggattcacag acatcaataa aaccacgtca actttatcca tcacataatc
    13201 taaatagctc aatggcgttg ccgggttaaa caccaagcct gatttacaac ctaaatcacg
    13261 gataagctgt aaatttcgat ctatatgttc cgttgcttca gggtggaatg taatataatc
    13321 cgctccggct ttggcaaaat ccggaatcaa acgctcaacc ggttttacca ttaaatgcac
    13381 atcaatcggg cattgaatgc cgtaatcacg taaggctttg cagatcgccg gcccgaaggt
    13441 caaattcggc acgtagtggt tgtccattac atcaaagtga attaagtctg caccggcttt
    13501 taacacctct gccacatcat cacccaagcg agctaaatcg gcagataaaa tagacggtgc
    13561 aattaaataa ggattcttac tcatatttcc tcactatcaa aaaataaatc tacgttagat
    13621 taccataatt ttaacagcga aaagagtctc tcttcctaaa aatccgtttt tttacaaaac
    13681 accataaaaa agttatggaa ttgtatttaa agttcgtata ttatgtatcc catattttaa
    13741 ttatggttaa tgaccttatc taaattctgg agaaaatatg aaaaaaggga ttcatcctga
    13801 aaattatcgt gaagtgttgt tctatgatgc ctcagtgcaa caaggctggg ttatccgttc
    13861 ttgtgcggca accaacaaaa caatggtatg ggaagatggc aaagaatacc cactttacac
    13921 cttagatacc tcatcggcgt ctcaccctgt ttacacaggt aaacgccgtg aagtgaatac
    13981 agaaggtcgt gcaagtcaat ttaaagatag atttaaaggc tttgcttcaa cgctttcaaa
    14041 tcaaaaatag aggataaaat gaaaatctta aactcactta aaaccgcaaa atcacgccac
    14101 ccggattgcc aaattgtcag acgcaaaggc aaactttatg tgatttgcaa aaccaacccg
    14161 agatttaaag ctcgtcagcg ttaaaaacca gcaccttaat aagctaattt attaaggtgt
    14221 tttttatttc atcttctcaa tattacctat tttaaccaca tcaacgattt tattatttct
    14281 tattccattt agttatttgc aagcggtcaa ttttcccctt aaatttgcaa aaaatttatt
    14341 ttaccaatta aaaggaaatg attatgttga aaaaattatc aattgctgca ttagctctta
    14401 ccctttctgt ttctgcattt gctaaagaga gcctacttga gcgtataaac aacaaaggga
    14461 ctattactgt gggtacggaa ggaacttatg ccccttacac ctatcacgat gcgagcggta
    14521 aattaaccgg ttacgatgta gaagtaaccc gtgcggtggc tgaaaaatta gacgtaaaag
    14581 tggaatttaa agagacacaa tgggacgcta tgttagccgg tttaaaaggt gagcgttttg
    14641 acttagtggc aaaccaagtg gctttaacca gcccggaacg tcgagcgaca tttgataaat
    14701 ccgaatctta cagctgggac ggtgccgcct tattagtgcg tgaagatgaa actaaaatca
    14761 aaacccctgc tgatgtaaaa ggcgtgaaaa ctgcccaaac cttgagctca aactatggcg
    14821 agattgcccg tgaaaacggt gcagacatcg tgccaattga cggtatggct caaggcttac
    14881 tgttaattca acaaaaacgc gccgatgcaa ctttcaatag ccacttatcg ctattagatt
    14941 acttgaaaaa gaacccgaat tccggcttaa aaattgtgtg ggaaaaagaa gaaaaagtgg
    15001 gtgcaggctt aattgcgaat aaaggcaatg acgaagcatt agcgaaaatc agcaaagcaa
    15061 tcgtagaatt acgtgaagac ggcacgttaa aaaaattggg cgagcagttc ttcggtaaag
    15121 atattagtgt acaataatcc atattggatt aggcttgggg cgaattcgcc ccttttattt
    15181 ttaaatctcc ctcaaaacgg gagattttag gtttttcaga tgttaaacga tctacttctc
    15241 tcaatcccct ttatgaccca agctcgggtc gatttagtgc taagcggttt ttggccgatg
    15301 gtacaagcgg catttttagt ctctattccg ctggcaatcg cctcatttat tatcggtatg
    15361 ttaattgccg ttgcagttgc attagtgcga attagccctg caacaggctt ttttcaccgc
    15421 ttgctactgt ggctggtaaa aggttatatc tcgattattc gcggcacgcc gatgttggtt
    15481 cagatctgta ttgtgtttta tggtttgcct gcaatcggca tttttatcga tccgattccg
    15541 gcggcaatta tcgggttttc actcaatatc ggggcttatg gctcggaaac gatccgtgct
    15601 gcgatctcct ccgtgccaaa aggacaatgg gaagccggtt atactatcgg tatgacttat
    15661 atgcaaactt ttcgccgtat cattgccccg caagcgtttc gagttgctgt tccgccactt
    15721 agcaacacct ttatcggtct gtttaaagat acctctcttg cctccgttgt taccgtaacc
    15781 gaaatgttcc gggttgctca acaggtagca aatatgtctt atgacttcct acctgtttat
    15841 attgaagccg gtttgattta ttggtgcttc tgctgggtgc tatttttaat tcaggcgaga
    15901 ttggaagtcc gctttaaccg atttgtggcg aaataaggag gaattgtgct taaaattcgc
    15961 aatattcata aaacctttgg caacaacgct attctacgcg gcattgattt agatattcaa
    16021 aaagggcaag tggtagtaat tttaggccct tccggttcag gcaaaaccac ctttcttcgt
    16081 tgcttaaatg cactggaaat gcccgagcaa ggcacattgg aatttagtgg taatgctccg
    16141 ctgaaaattg attttgccgt aaaacagagc aaaaaagaga ttttagcgct acgccgcaaa
    16201 tccggtatgg tgttccaaaa ctacaacctg ttcccgcata aaaccgcatt ggaaaatgtg
    16261 atggaaggac cggtatttgt gcaacaacaa gcggtcgaaa ttgctcaaaa aaatgcaaaa
    16321 gccctgttag aaaaagtcgg actggcggat aaagcagaac tctacccgtt tcaactgtca
    16381 ggcgggcaac agcaacgggt tggcattgca cgagcattag caattcagcc ggagctgatg
    16441 ttatttgatg aaccaacttc ggcacttgat cctgagttag tgcaagacgt gctaaatacg
    16501 atgaaagaac tggcaaatga aggctggaca atggtcgtgg ttactcacga aatcaaattt
    16561 gcccttgatg ttgccgatgt agtggtggta atggacggcg gtgaaatcgt tgaacaaggc
    16621 tcgccacagc aactgtttaa ccacccacaa cacgaacgaa ctaaacgttt tttaaatcaa
    16681 atcagagcgg ataaataaga aacgatagcg ctagcgtcca cgctagtgct atctaataaa
    16741 tggtacaagc ggttaattat gtataaattg ttatactgtt ttggcacgag cgtggacgct
    16801 cgcgccatcg tacagtaaaa tcagctaaca aggttcccca taaaggataa ataagacaag
    16861 gctccttaat cttttagatt aaggagctta tttttagatt ttagaaatcc gatttaagcc
    16921 gcagcccata gtccaccaaa aatttggtag aacaagctat ttagtagcaa taagccgaaa
    16981 cctagcacca ttaccgagaa atctaacatt cccgttcttg gcaggagctt gcggataaaa
    17041 cctaacaccg gttcggtaat ttgtgctacc gtgtagtcta atgggtggtt gccttgagtg
    17101 acccagctca ttaatgcacg aatcaaggtg gtgaaaaata gaatttgtcc gaaggttttg
    17161 accacactta ataagccgat taatactgct ctgggtaaat ctacgccaaa cagaataaac
    17221 tgtaacgtta ccaaagcggc ggcaattaat agtgccggaa agcaaatatt tttaacggtt
    17281 ggaatcagct tgccaaccgg tgaaaccatc ggttcggtaa ttttaagtaa ggtttgtgaa
    17341 atcggtaaac gaggatcaac ccgacaaaat tgcagccaag ttcttagcac cagcacaaaa
    17401 cttaaaaagc caacaataag cgaaataaca ggagctaaaa attccatctc tttttctctt
    17461 tctatacaaa acaagcggtc gttttttaga aaaaatttgc aaattttcag taaaatctga
    17521 ccgcttgtat cttattaaat taactaggca aattaagctt gtgctgggta gtcccaccaa
    17581 atatcaaata attcgctcac ttgaacctct tttaagccgt tagtttctaa ccaagttttc
    17641 actaattggc ggtgagattc atcacatttg cctaattttt ctaagcagac taaaccttcc
    17701 cagtttaagt agccgttcgc ttcaagggct aaaccgtttg gtcgaatcac ttcatcgata
    17761 aaacgatcta cggtttcatc aatttggtca atgcctgtgc cttcagcaaa ggtgaattta
    17821 attaagaaac ctaattcttg gtattcacct aagtgcattt ttttacgttg gcgtgcgtta
    17881 cgttgaatag ccattttttc tctcctctat gaataaatca tttctttgta aaatataaat
    17941 cccacacccc gtgtcctaaa cgatgccctc gctcttcaaa tttggttagc gggcggaaat
    18001 tcggacgtgg aataaaatca ttagttgctg atgtattttg caactcgctc tcaaattggc
    18061 gtaatacttc aagcatatgt tctgcgtaat tttcccagtc ggtggcaaaa tgaataaagc
    18121 cgttagggct taattttctg atcacacggc tgataaattc aggctgcaca atacggcgtt
    18181 tgtggtgttt tgctttttgc caagggtctg ggaagtaaag ctgtaagcca cctaatgtac
    18241 cgtcagcaat gctgtctcgc aaaatttcgg tggcatcgtg gcaaattact cttaaattct
    18301 tcacgccttt ttctaacgca taagcgatac aagcccccac cccgggcgtg tgcacctcaa
    18361 tgccgatata gttgcgattc gggttttgct ctgccatttc caccagcgat tttcccattc
    18421 cgaagccgat ttctaacact accgggttgt tattgccgaa aatctgctca aaattaaagg
    18481 gcattggctg gtaatctaag cctaaatttg cccagttgtt gttcatcata tcacgttgat
    18541 aatcgctcaa acgaccggta cgcaatacaa aactccgcac ttttcgtaaa taacgcccat
    18601 cttcggtaaa ctcggcttgc tcaacggttt tacgtttttt atctgcaaaa gtctgttttt
    18661 ctgacatttt cttgccttaa aacttcacta ataccgaacc ccaagtccag ccaccgccga
    18721 atgcttcaag gagtagtaat tgcccacgtt gaattcgccc gtcacgcacc gcttcatcta
    18781 atgccaccgg cactgttgct ccactggtat tggcatattt atcaagggta accaccactt
    18841 gatccatttc catctctaat tttttcgccg ttgcggtgat aatgcgtaaa ttcgcttggt
    18901 gcggaatcag ccaatctaaa tcggattttt gtagattatt cgcttctaag gtttcttcta
    18961 ccacgcttga aagttggttt actgcaattt taaaggtggc attgccctgc atttcaataa
    19021 agccggaacg ctcttcgcca cgcttttggc ttcttaaggt taagttattt tctaaatccg
    19081 gtgaggcgtg caagtgggtt gaaataatac ccagctcttc actcgcctct aaaatcaccg
    19141 ccccagctcc gtcaccaaat aatactactg tgctgcggtc ggtttcgtct aacattctgg
    19201 aattgatgtc tgaaccaata accaatgcct ttttcacttg cccgttacgc acgaattgat
    19261 cggcaacagt taaagcatac acaaatcctg tacaagccgc tgccacatca aaagcaatcg
    19321 cgtcttcaat ctgaagcaag ccttgaattt ggcaagctgc acttgggtaa gcgtgggagt
    19381 tggtagttgt tcccaccaca attaaatcaa tgtcatttgc ctcaattcct gccatttcca
    19441 gtgcttgttg agcggctttt gcccccattg ttgccactgt ttcgtcaggc tcggcaatac
    19501 ggcgttcacg aatgccggaa cgggttacga tccattcatc agaggtatcg accatttttt
    19561 ctaaatcagc attggtacgc acctttgtcg gtaaatagct tcccgttgct aaaattctac
    19621 tattcatatt tttattattc tcaatcaatt aaatgataat ccgttattat agcttgaaaa
    19681 ccaacaaata tataggcttt acaagcggtc atttttagca aaaaagttgc attcacgaac
    19741 gattttgcac tagaaccacc gcttgctagt atttatttcg cttgagcctc ttcgtatagc
    19801 cacttcgcta ctcgcttggc gaaataagtt agaataccgt ctgctcctgc ccgtttaaag
    19861 cagagtaatc cctccataat gcactcacgc tctttcagcc agccgttttg gattgccgcc
    19921 atatgcatcg cgtattcgcc cgaaacttgg taggcgaagg ttggcacgcc aaaattctct
    19981 ttcacacgcc acaccatatc caaataaggc atacccggtt tcaccatcac catatctgcc
    20041 ccttcttgaa tatccatcgc cacttcgtgc aagccttcgt tgccgttagc cggatcgact
    20101 tggtaagtgt atttattacc gccttttaag ttgccggcag aacctactgc atcacggaac
    20161 ggtccgtaat aattagacgc atatttagcc gaatacgcca taatttgcgt attgataaaa
    20221 ccgttttgct caagggcttc acgaattttg ccgattcgac cgtccatcat atcgctcggg
    20281 gcaacaatat ccgcccccgc ttctgcgtgc gataacgcct gttttaccaa tacttcagta
    20341 gtcacatcat tcagtacata gcctgtttca tcaataatgc cgtcttgtcc gtgcgtggta
    20401 aacgggtcta acgccacatc agtaatcacg cctaattccg gaaattgagc ttttaaagct
    20461 cgcacggcac gctgtgccaa cccttgcggg ttataggcct cttctgccat cagtgatttt
    20521 ttcacatcac ccaccacagg gaaaagagcc accgcaggca cgccatattt aaccagttct
    20581 gcggcttcaa ctaaaagctg gtcgatagtt aaacgctcta cacccggcat agaaggcact
    20641 tgtactcgct gattttcccc ttcgatgaca aaaacagggt aaatcaaatc attaacggta
    20701 agttgatttt ctgccactaa gcggcggctg aaatcgtgct tgcgtaaacg acgcatacgg
    20761 cgtaaaggat attgggattg aattacttgc atttttaatt tcctaattct taaaatacct
    20821 attcttgaaa taagaaaggc atagcaaaca ggtgctatgc cttttcaaaa tattactgtg
    20881 caacctgctc tgatggttca tcatcatctt tggggcgata aaaccgagca aatagcacac
    20941 caacttcaaa caataaacac attggaattg ccaataatgt ttgcgagaaa atatctggtg
    21001 gggtgagcaa cataccaatt acaaatgctg ccacaataat ataagggcgt tttgccttta
    21061 aatcttcggg tgtggttacg cctgcccaac ataacaagat aatcgcaacc ggcacttcaa
    21121 agcagatccc gaatgccata aaaatggtta aaacgaaatc aagatagcta ctaatatccg
    21181 ttgccattgt taccccttcc ggagcggtag aggttaaaaa gccaaataca agcggaaata
    21241 caacataata ggcaaaagcg acaccacaat aaaacagcaa tgtgctagat accaataatg
    21301 ggtaaaccaa acgcttttcc tgcttgtata aagcaggggc gacaaacgcc caaatttggt
    21361 acaaaataaa aggaactgat aaaaacaccg aaaccacaat ggttaattta attggggtaa
    21421 aaaacggagt ggctacattg gttgcaatca ttgttgcacc gtctggtaaa ttgtccgtta
    21481 aaggtgttgc caataaggtg taaatatcat tggcccagta aaccaatccg caaaacacca
    21541 agagcacaca gataaaacta cgcagtaatc ggtttctcag ctcaattaaa tgtgtaatca
    21601 gaggttgaga ctcatcaact tgcgacatta tttgcctccg atttctgcgc tgattctgat
    21661 gattgaggcg tagctaaatc atcatctggc ggatagtaag attccaacgt taaaagcgat
    21721 tcgtccattt ctgcttgttc agccagctca tcagccgaaa gtggcttttc tgtccgcgta
    21781 acattaagtt gctcagataa actatccact tcaagcggtt tattttgcgc atttttttgc
    21841 aattcttgcg cctctaacac ctggctttct tgctcgattt tttgctgaat ttctgcgact
    21901 tgctcatcgg ttaatttagg aattgtgctg ctttccgcag ccgttttttc caactcattt
    21961 tttgcagaat taagcgaatc ttgcaactgg gtggctgaca ttttcagatc ttccaccgtt
    22021 ttatttaatt ctggcgaaag ggagcttaaa ttcaactctt ctgccttttt aatgctctct
    22081 tttaattctt gcagtttcag ctcttgagcc agttcatttt gtacgtttgc ggctaaacct
    22141 cgaattgtac tcacccagcc cattacggta cgaatcgcaa tcggcatacg tttcgggcct
    22201 agcaccacca agcccacaat cataatcagt actaattcag aaaaacctat atcaaacacg
    22261 gattaagcct gctctttctc ttttgctttc tgctctgctg aaattgcatc ttttgcttcc
    22321 actttttcaa attcagcatc ttttttctca tctgccattg cttttttgaa gccttttaca
    22381 gattcgccca aatccgaacc taaagtacgt aatttcttcg taccgaaaag taatacgatg
    22441 attgcaacca caatcagaag ctgccaaata ctaataccgc ccataaaaac tcctttcatt
    22501 taatagggaa tagataaaat aaaacgctgt ttattatatg ttactttgac atataaaaaa
    22561 gtaattttgc aaaaaatttg tcaaaaacaa ccgcttattt gcgttgactc aaaatcaata
    22621 ccagtggaaa taaagttaat aacggcacac ttagccatat cggcaaagat tcaaatttcc
    22681 aaaatgcgcc acagatcaca atcgctgaaa ttgacagcac aagaaaacgg ctatttgcgt
    22741 ttgaattctg tgcttttaaa ctttcgttaa tttccgctaa acggaaatta atttgctttt
    22801 gctcttgtaa ggctttaaac aatgcctccg gaaactccgc aaaatgctcc cgatattgcg
    22861 gtaaacgttg cttaatgtct cgaaccatcg ctttcacacc tacctgctca ttcagccagt
    22921 tttgtaaaaa cggttttgcg gtttgccata aatccaactg tggataaacc tgcctgccca
    22981 aaccttcaat ataaagaagt gttttttgca acaacaccaa ctgcggctgc acttccatat
    23041 taaattctct tgccacatta aacaggttga gcaaaacgtg tccgaatgaa atttccgata
    23101 acggcttagc aaaaatcggc tcacatacct cacgaaaggc ttgctcaaat ttatcaatat
    23161 cggtatccgg cggcgtccag cccgattcca cgtgcattaa ggcaacacgg cggtaatctc
    23221 ggttgaaaaa tgcgacaaaa ctttcggcta aatagcgttt gtcattgtgg ttcaacgtgc
    23281 cgacaatccc gcagtcaatg ccgatatatt gcggattttc cgggtgttct ctgttcacaa
    23341 aaatattgcc ggcgtgcata tcggcgtgga aaaaactgtc acggaatact tgggtaaaaa
    23401 atacctgcac accacgctct gccagcaatt tcatatcggt gctgttcgct tccaactcgg
    23461 caatgttaga cactggaatg ccataaatcc gctccatcgc aatcaagttt ttatggcaaa
    23521 aatcttgata catttcaggc acatacagca tttcgctatt ttcaaaattc gcccgaagcc
    23581 gaatggcatt gtgcatttct ttgcgtaaat ccagctcgtc taaaatagtt ttttcgtact
    23641 ctcgcaccac ttcaaccgcc cgtagccgtt tgccgtcatt cgataatttc gggataaagt
    23701 gagcaatttc atacatcaac tctaaatccg ccttaatcac cggctcaatg cccgggcgaa
    23761 tcacttttaa caccacatct ttgcctgcaa gcggttgatt ttggttaaat tttgccgtgt
    23821 gaacctgtgc aatcgaagca gaagctaagg cagtttcatc aaagttttca aaccaagttt
    23881 caagctttcc gcccaaagcc tgctcgataa tttgacgagc gattttgccg tcaaacggtt
    23941 caacattatc ttgtagcaag gcgagctggt cggcaagctc cggtgcaaac agatcacgtc
    24001 tggtagctaa catttgcccg agcttgatcc aaaccggtcc aagctcttgc aaagccaaac
    24061 gtaaacgtac accgtaaggt ttgtctgaat gttgattctt cacccaaaac aaagccttac
    24121 gccctagctt tattttgcgg gtaattggca gattcggaat ggcttcatca ataccatagc
    24181 gaagaaaagt gcggataata tggtaaaagc ggttgagatt tttgatgttc attgaaatat
    24241 atatttaatg gtaattagga agattttagc aaaattctgt aaaaatttaa ccgcttgttg
    24301 ggctactatg ggtatttctg ctcaaaattc tcaatttctt tctgtacttc cgcaataagt
    24361 gtttgttcag aggggaggta aagttggtat tggctggcaa aaattttatt ctgattttcc
    24421 ggtagcgaaa attttaccac cgcatcattt ttatcggcac aaagcaagac accaatagtg
    24481 gcattttcgt gcggcagttt ttcaactcgg tcaaaataat tgacgtacat ctgtaattgc
    24541 cccaaatctt gatgggtgag cttgtgggtt ttaatttcaa aaatcacaaa acattgaagt
    24601 aaacggttgt aacaaaccaa atcgacaaaa aaatcatcac cgtctaggtg caaacgcttt
    24661 tggcgtgcga taaacgagaa accgttaccc aattctagta gaaaatcctg caaatgcgta
    24721 atgatggctt gctctaaatc cttttcgtaa taagcacttt cccgttttag tccgagaaat
    24781 tccaatacca tcgggtcttt aatgagctgt ttcggatcaa ccggctgctg ctcatttctg
    24841 gcaacagcaa gcacactttc cttatcatta ctgagcaata atcgctcgta tagactacta
    24901 ttaatttgcc gttccagctg gcgtgaactc caattattct tacaactttc agccaaataa
    24961 aattcccttt tgtcagaatc ggagatttga attagacgac gatattgtgt ccaattcaat
    25021 tgcgaccgca gtgcggtcgc aattggaaac gcacgataaa actggcgata acgctctaat
    25081 tgacggctac aaaaaccact tccaaattct ggctcaagct cttttgcgag cattttaatc
    25141 aggtatgttc cataatcagc acgctcttgc ccttgttgct cctgttcaaa aatccgtttt
    25201 ccgatgtgcc aatacatcag cacacgttgg aaatctaccg cacgaaccgc attttcacga
    25261 gcttgagcaa taatttgttt aatatcttag atcatcgttg tttctattaa cataaaagcc
    25321 tccgttttgg attaagttta tgcttaatct atccggaggc aatttctttc actcaacttt
    25381 tcgagtcata tcacaatttt attttgttaa atttaatttt gcacaaacgc ttgcgtttga
    25441 acatcagctt tgctgatggc tcgaagagcg aacgtagtga gtaaattttt gctctaattt
    25501 gagcgcttgt tgggcaagtt cttcgacttg gtcatagaaa tgcaccgcct gtaaacgatg
    25561 caccaacacc ggtctttctt ggattaaatt ctcaaccaaa tgttgattat tttgctcaaa
    25621 ttgagctttt actttaccta gcaatttttt agcaagatcg gtgctagttt gagccactac
    25681 atcgccaaca aaaggggaaa gcagttcggc agggtctttt tcgagctgtt caagtaatgc
    25741 agtgaaatgt tgcaacactt gaatatcgcc cgtcagcacc aacgatttat tattaatcag
    25801 ctcggttaat ttttgcttat ccgctagttt cggcagggtg tcaaatgcca gttgcaccgt
    25861 acaatctgct tccccctcgt agttgccaag ccaatcggtt cggctttcgc taaacaacac
    25921 aaaaaagtcg attttaggcg aagttagggc gatttttagc acttttccgg acaatttacg
    25981 caaattcggc tcaatatgag gcgagcgttt aagtaacgca ttaaaagcgg tttcaatcag
    26041 accaaaggta aattgcggga gcattaattg ttgttttaca ttatttaaca ttcgtaccta
    26101 cttaccctct tcacttttgg gagaaggata gattgttctt cattaagaag caaaatcagg
    26161 gagaggggta tttgcaaaat attgaataaa tatgaccgct tgccccctct ctctgcttat
    26221 ttcgctaaac gctcataagc ggtctctctc ccacaaaggg agagagtcat ttaagagaaa
    26281 actaaaattt ataacctctg tgtaatgcca caatgccggc acttaagttg tagtaattca
    26341 cgctttcaaa gccagtttgt tccatcattg cttttagctc gtcttgtttc gggtgcattc
    26401 ggatcgattc agctaaatag cggtaacttt cggcgtcatt taccaccact tcgcccactt
    26461 tcggcaaaat attgaatgag tagaaattat aaagctggct gattgggtcg ataatcggtt
    26521 ttgagaattc caacacaagt aagcgaccgc ccggttttag cacgcggaac attgaacgta
    26581 gggctttgtc tttgtcggta acattacgca agccaaaact aatcacaata caatcaaaag
    26641 tgttatcagc aaaaggcaag cattcggcat tcgcttgaac gtagctcaca tttccaacca
    26701 cgcctaaatt gcgtaatttt tcccgcccga cttccaacat tgagctgtta atatcggcta
    26761 aaatcacctc accactttca ccaacaatgc gagagaattt tgcggtaaaa tcacccgtgc
    26821 cgccggcaag atccagcact ttttgccctt tacgcacgcc actgcaatca atggtaaagc
    26881 gtttccacac tcgatgaatg ccgaaagaaa gcaaatcgtt cattaggtca tatttgcctg
    26941 ccaccgagtg aaacacattt gcgaccagtt gctgtttttc ttctttcgct acggttttaa
    27001 acccaaagtg ggtggtttct gccgattgtt gcacttcttg ttgcacttca tctttaggtg
    27061 ctaattgttc tacatcgctc attttcttgt ctctagttgc aaaatttagg cgtaaccata
    27121 gcaaaaaagc ggtcgttttt ctttaacttt ttgcaaattt tcttaagtaa ataaccgctt
    27181 tcttgactag aaaagccaaa ttctgtaaca ttcgcacact attttttctt gaggattaca
    27241 cattttggac agtcatagtc gatacttacc cgtttaacct atcttgtcta acctcaatgt
    27301 taccgacaag gtcggtaatg ctcgcctagt atctttgttc ctttttgttc caagcctcct
    27361 aactatttgg agctaaacat gatccgtgct tttggactag ataacgcatg tttaatcagc
    27421 gttgatgaaa ctaacccaac tttattaaat gatgcgattt ggattgatct catcgatcca
    27481 tcagaagctg aacgaaccgt attagaaaac cgcttagacc aaacactcgc tgaagaacgt
    27541 gaattggaag acttagaggc gtctgcccgt ttctttgaag atgaagacgg tttgcacctg
    27601 cactcgttct tttactgctt agatgatgac gattacgccg atattgccac tgtcgccttc
    27661 actattcgtg acgggcgttt gtttaccttg cgtgatcggg atttacccgc atttcgcttg
    27721 tatcgaatgc gttcccgccg tgagaaattg attgacagca acgcctatga actcttactc
    27781 gatttatttg agaccaaaat cgagcagctt gcagacgtaa ttgaagaagt ctatgctgac
    27841 ttagaaaaat taagtcgggt tattctaaac ggtcagcaag aaaatgagaa tttcaatgat
    27901 gccctttctc gcttaactga atttgaagat gcaagttcaa aagtgcgttt atgtttgatg
    27961 gatacgcaac gggcgttaag tttcttactg cgtaaaaccc gtttgccgaa taatcagcta
    28021 gaacaagccc gtgacattat gcgagatatt gaatctctgc aaccgcacaa tgaatccttg
    28081 ttccaaaaag tgaatttttt aatgcaagcg gcaatgggtt atatcaatat tgagcagaac
    28141 cgaattatga aattcttctc ggtggtgtca gtgatgttcc tacctgctac gctggttgct
    28201 tctacttacg gtatgaactt tgaatttatg ccggaacttc atttccaata tggctaccct
    28261 atggcgattg gtttaatgat tgttgccgcc tccgcccctt atctttattt taaacgtaaa
    28321 ggttggttat aatttatttt taaagcctat agttgaat
//
LOCUS       DANMGB010000011        26344 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.011, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000011 DANMGB010000000
VERSION     DANMGB010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 26344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26344
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.011"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..373
                     /locus_tag="PXG19_000376"
     CDS             <1..373
                     /locus_tag="PXG19_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065709.1"
                     /translation="FALVQAELKYSGSNIPSEYSKFNLENVLIDFPNKTNSVAYQNLV
                     IHNAKTRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQVRCHLVHGSLSPTPE
                     NHEVVKYCYLILWDCLKGFCD"
     gene            complement(641..1378)
                     /locus_tag="PXG19_000377"
     CDS             complement(641..1378)
                     /locus_tag="PXG19_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6065710.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(1375..2343)
                     /locus_tag="PXG19_000378"
     CDS             complement(1375..2343)
                     /locus_tag="PXG19_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6065711.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            2524..2859
                     /locus_tag="PXG19_000379"
     CDS             2524..2859
                     /locus_tag="PXG19_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6065712.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            2843..3166
                     /locus_tag="PXG19_000380"
     CDS             2843..3166
                     /locus_tag="PXG19_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6065713.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3156..5042)
                     /locus_tag="PXG19_000381"
     CDS             complement(3156..5042)
                     /locus_tag="PXG19_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6065714.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5072..5872
                     /gene="metF"
                     /locus_tag="PXG19_000382"
     CDS             5072..5872
                     /gene="metF"
                     /locus_tag="PXG19_000382"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL6065715.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5921..7081)
                     /locus_tag="PXG19_000383"
     CDS             complement(5921..7081)
                     /locus_tag="PXG19_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065716.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7141..8157)
                     /gene="galE"
                     /locus_tag="PXG19_000384"
     CDS             complement(7141..8157)
                     /gene="galE"
                     /locus_tag="PXG19_000384"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL6065717.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8245..8406)
                     /locus_tag="PXG19_000385"
     CDS             complement(8245..8406)
                     /locus_tag="PXG19_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL6065718.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8384..9385)
                     /gene="lpxK"
                     /locus_tag="PXG19_000386"
     CDS             complement(8384..9385)
                     /gene="lpxK"
                     /locus_tag="PXG19_000386"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL6065719.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9387..9791)
                     /locus_tag="PXG19_000387"
     CDS             complement(9387..9791)
                     /locus_tag="PXG19_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6065720.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDICELLSYGEEGKIYINNTDNNLTNSFISLGNGVEEIQRLQLIISH
                     KDELLAHKEEIIENQKRELALLRDLVETLKNK"
     gene            9926..10108
                     /locus_tag="PXG19_000388"
     CDS             9926..10108
                     /locus_tag="PXG19_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065721.1"
                     /translation="MNNQYNPLYGMLGILASAASVILPLYAAYKDYQFGENMLSLMDI
                     IIFPLGIVRGLMYLFG"
     gene            10112..10441
                     /locus_tag="PXG19_000389"
     CDS             10112..10441
                     /locus_tag="PXG19_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065722.1"
                     /translation="MKKYLFFAFMTLSNVAYPNLDEWYSASDKERREFIAKHFAEETV
                     RSDRNTPYDYAMCTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQ
                     NCAKYIQ"
     gene            complement(10477..11229)
                     /locus_tag="PXG19_000390"
     CDS             complement(10477..11229)
                     /locus_tag="PXG19_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL6065723.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(11268..12515)
                     /gene="clpX"
                     /locus_tag="PXG19_000391"
     CDS             complement(11268..12515)
                     /gene="clpX"
                     /locus_tag="PXG19_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL6065724.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(12515..13108)
                     /gene="clpP"
                     /locus_tag="PXG19_000392"
     CDS             complement(12515..13108)
                     /gene="clpP"
                     /locus_tag="PXG19_000392"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL6065725.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            13220..13603
                     /locus_tag="PXG19_000393"
     CDS             13220..13603
                     /locus_tag="PXG19_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL6065726.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(13707..13783)
                     /locus_tag="PXG19_000394"
     tRNA            complement(13707..13783)
                     /locus_tag="PXG19_000394"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13747..13749),aa:Asp,seq:gtc)
     gene            complement(13872..14627)
                     /locus_tag="PXG19_000395"
     CDS             complement(13872..14627)
                     /locus_tag="PXG19_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6065727.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(14687..15682)
                     /gene="trpD"
                     /locus_tag="PXG19_000396"
     CDS             complement(14687..15682)
                     /gene="trpD"
                     /locus_tag="PXG19_000396"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL6065728.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(15700..16086)
                     /locus_tag="PXG19_000397"
     CDS             complement(15700..16086)
                     /locus_tag="PXG19_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL6065729.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(16079..16669)
                     /locus_tag="PXG19_000398"
     CDS             complement(16079..16669)
                     /locus_tag="PXG19_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL6065730.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(16679..18235)
                     /gene="trpE"
                     /locus_tag="PXG19_000399"
     CDS             complement(16679..18235)
                     /gene="trpE"
                     /locus_tag="PXG19_000399"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL6065731.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            18377..18994
                     /locus_tag="PXG19_000400"
     CDS             18377..18994
                     /locus_tag="PXG19_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL6065732.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            19140..20207
                     /gene="rluB"
                     /locus_tag="PXG19_000401"
     CDS             19140..20207
                     /gene="rluB"
                     /locus_tag="PXG19_000401"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL6065733.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            20273..22045
                     /locus_tag="PXG19_000402"
     CDS             20273..22045
                     /locus_tag="PXG19_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL6065734.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(22135..26286)
                     /locus_tag="PXG19_000403"
     CDS             complement(22135..26286)
                     /locus_tag="PXG19_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6065735.1"
                     /translation="MNKIYRIVWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLS
                     TLSLALSAGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKV
                     STALGYNTTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFI
                     GDHAGLNHSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKL
                     AGPTTNVTSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAY
                     GAEANATAIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGT
                     NAGATSDYASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESS
                     NASAFNATAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATV
                     SIGAEGKERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTE
                     NGNITFPTYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERH
                     LGSTVKIKGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGI
                     TIANGVADKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSIS
                     DDGIQRANYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADG
                     MNATSIGYNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGEN
                     STAVGYEASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAI
                     ALGNSANAAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKS
                     ATLNGNTYTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEI
                     DGLNTKVNELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANT
                     LTVKLAKDIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDIS
                     PISADAVNGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNV
                     GSAITALNDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNG
                     SLTVKLAKDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAA
                     GTKVTNVKAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATA
                     GLPQAYLPGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIG
                     MGYQW"
BASE COUNT         7249 a         5448 c         5684 g         7963 t
ORIGIN      
        1 ttttgcatta gttcaggcag agttaaaata ttcaggtagc aatattccaa gtgaatattc
       61 taaatttaac ttggaaaatg tgcttattga ttttcctaac aagacaaatt ctgtagcata
      121 tcagaatcta gttattcaca acgcaaaaac gcgtgcagga aaattaaaaa cacaatatgc
      181 aaatgctcac gatttaggca atttggtttt agtagaggat atccaaaaaa tattttccgg
      241 gttattagaa ataatttatc aagttcgttg ccatttggta catggtagct taagtccaac
      301 acctgaaaac cacgaagttg ttaaatattg ctatttgatt ttgtgggatt gtttaaaagg
      361 attttgtgat tagttattgt caataaagct acaagcggtc aattctccca aaactttgca
      421 aatttccccg caaaactgac cgcttgttct cctctatcca ttcacctcaa ccaacttttc
      481 tctctacccc tactcaaaat cggttaaaca atctgttgag gtaaatgttg tgtcggaatg
      541 ggatttaatc ttaatgaaac tgaaaaaatc ttctgccaag caaatttccc taaaattgga
      601 agttcatttc caatttctca aaaaatcacc caaaccggaa ctacacttcc aatttttcaa
      661 tcccccacat ttcccttttc tcccaatcca tttcagcttt caccccaaaa gccgttgcaa
      721 tattttcggc atttaagacc gcttgtgtgt tgccgctgac gagtaaattg ccgtttttaa
      781 gcagaatgat ttcatcacaa aaacggtagg caaggggcaa atgatgaatc accaccacgc
      841 aggtttgtgt tggagttagg gctttgagct gctgcataat atcgatttgg tagtaggggt
      901 cgagggcggc aatcggttca tcggcaagca agatcggggc ttgtttcatc aaacaacggg
      961 cgagttgcac tcgggtctgt tcaccgccgg agagctgttg gtaagtgttg tccagcaggt
     1021 gagaaatcgc caattgttcg gcaaccgaac gcaccttttg acgctcttgt tcaggcggaa
     1081 gcggtgcggg caagccgagt gcaatcacat catacaccga aagttgccac gccacgttga
     1141 gctgttgggc gaggtaggca aattgtcggc tcctctcaac ggcggaaagg gcgtgcagtt
     1201 tgcaattttc cagccaaatt tcaccgcttg tcgggcgtag aatgccggca atcgctttga
     1261 gcaacgagga tttccctgcc ccgtttgcgc ccataatgcc gatcaatttg ccttttggca
     1321 gatagcaaga gaggtgttga ataccgtggg caagggtgag attttcaatc ttgatcattg
     1381 tgccaatctc cattgctggg tgaataaaat ccaaatcaaa aacggtacgc ccaaaattgc
     1441 cgtgagcgtg ccgatgtaaa ttcgggcaaa aaacggcaca tattgcaccg ccagatctgc
     1501 aatcagcagt aacaacgccc cgattaaagc ggaggtaaga taaagctggg acggcggttt
     1561 tttcagccaa atacgggcaa gatgaggggc tatcaagccg ataaaaccga tggtgccggt
     1621 ctgtggaatc gttgctccga ccaacagcgc cacgccaatg ctaacggtaa aaaaactgcg
     1681 ttgcaggttg atgcccattg ttgctgccgt ctcttcgcca aaggtgagca ggtcgagata
     1741 acgccgttcc cgatagaggc agacaatgcc gagcaagatc aacggtaacg cccaacatac
     1801 tgcctctgcg gttgcccaga ctaatgagcc ttgcaaccag cggtagagtt ccgccaacgc
     1861 ccacgggctt tcggcattgg aaagcagtaa agtcaccgct gccccgagca acacgtttac
     1921 cgccacgcca cttaaaatca tcattgttgt gccgtggcga aagctaatca gccacaccag
     1981 caaaaatgcc cccagcgccc ctgccacacc gccaaacagt agccagccca tcggggctga
     2041 aaaatagtag agcagaaata cgctcaccgc cgttgccccc gaactgctcc caagcaaacc
     2101 ggggctggca agcggatttt taaacacgcc ctgcatcgca ttgccggcaa gcgcaaggct
     2161 ggcgcccgtc agcaccgcca agccaatacg gggcagtcga atttcaccca gcaccagcca
     2221 gcgcagatcg cttagcacgc cttccgcatt tttaagcaag gcaaaatcgc tcagttggta
     2281 aaaggctgcg ttgctaacaa tcagcaacaa caagcttcca agcacaatgt ttaatttctt
     2341 cattcttctt tctctcatca aacgtgcaaa ttataccata gcgccaaagt caagctgaaa
     2401 acgctatttt tgcgatcatc atcgaaaaac tagcgtttgc cgaatgtaac ccacgacagg
     2461 ctttgctata ttccttcaat cagcctaagt tttgtattta aaacattaca gattgggggt
     2521 agaatgtacc atattgaacg cactgaaatt ttcgaccaat ggcttgaaaa tttaaaagat
     2581 ccacttgctg tggtgaccat tgcaagacgt attgaacgtg ccgaaagcgg aaattttggc
     2641 gataccaaat atatcgcaga aggaatttcc gaaatgaggc taaacgtcag caaaggttat
     2701 cgcctttact atgcgcaaaa aggtagcatt atttatatac tactaaatgg cggacataaa
     2761 ggcacgcaac aagctgatat tgataaagct aaaatgctat gggcagaaat taaacaacat
     2821 atggcagaac aggagaaaaa gaatgaacga attatatgac gccccaattc cacaagctac
     2881 tcgtgaaaaa tttggcattc aacctttcga tgccgctgaa tacctcgcca atgacgagct
     2941 aatcgccctt tatttggcgg aaacattgaa agacggcacg gacgaggagt ttattcaagc
     3001 attgaatacc gtggcacgag cgaaaggaat gaatgagtta gcgaaaaaag cagggatcgg
     3061 gcgtgaaagt ttgtatcaaa gcctttccag cagtaagccc cgttttgaga ctatccgcaa
     3121 aattattagc gcattaaatt tggagttgtc ggtcgttaag gcgtaagttt gtgcattaat
     3181 tgtatcccct gccaaacccc gtggtcgaaa cagtaggtgt atttcatcgg taggacaagc
     3241 ggtggatttt ggctcatttt ttgccatatt ttttgtaatg ctgggtgttt gagcagttcg
     3301 gcttggttgt tatagctttg gttatcggtg aggaacaata actgtttggg ttgcgctaac
     3361 agcagttttt ctagcgagaa attctgtggc gtgaggtcgc tttttaatgg tgacagaccg
     3421 agaagatcca acaacgtttg atattgcgga aaatgcggtt cgatcatacc cgtttcgctt
     3481 agaattaaag tttcagcaag cggttgtttt agcggaattt tttgcaaacg tagccgttcc
     3541 accagctttt ccgctttggc ttgattttgg gttagctcgc ccagttgtaa aatcagtgtg
     3601 aaaagctgtt cgggtgtttg cggactgtcg tttaatgcga ctaacttaaa gccaagctgt
     3661 ttcagccgtg cggtgagttg cggatagaag gtttcattca gcaaaatggt gctgtcggca
     3721 tagggcaaca gggcggtgag ttcaggctca acggtgggct tgtccgtgtt cagtttatcc
     3781 aacatcatca acggcttttg ggaatagggc gacatcgccc gaatttgctg tggttcggca
     3841 agttccagca acagacggtc gctacacaaa tttggcgata aacggtaagc tcctgaaata
     3901 cgcccagtga tagaattttt aaactgtgaa ttatcggtgt aacggccact aatagaaaaa
     3961 ctgtgatctt gttcggtaaa taagcgatat tctagtgccg cacttttttc ggataaggtt
     4021 ttttcacgca aatatttatc agaggtatag cgtgtttttg cataatctgt cagtaaactg
     4081 accgcttgtg tcacttctcc ttcacggtca aagtttacat ctaattgata attcgcatta
     4141 agttgttttt cgttgctgta gcgagcattt gaaccgaaat gtgttgcttt actattgaat
     4201 tggctgatat ttgcttggtg tttcagcagc tcttgttcat ttccccaata accgcctaat
     4261 ttaaaagttt gattgcgagt acgggaatat tcaccgctaa cgtctgaatt atagccatca
     4321 atatgaacgg tttgggaaga ttgagcggca agaacttcta cccctttgtt accgaggtca
     4381 taacctaaac gtaaagagcc gttatcacga tgaaagccat ctcgttcgct tgcaccaccg
     4441 gttttcactt ctgagcctgt ttctgtggta tagctgaaat ggtttttact cagtgcggaa
     4501 atgcctttgg tacgatggct atcaccgtgt aaggcatagt agaaaccgtt gtgaaatccg
     4561 gaaagtgttg cgctggcatc acgggtatta tttgagccta aaccaagatc gacctccgca
     4621 ttgaatggtt tctctttgta taaaccgctt ttagtggtga tataaactac accacccata
     4681 gcactgcttc cccaaagggc ggattgctcg ccacgcaaca cttcgatacg ttcgatattg
     4741 ctaatcggta agccaccaaa atcgaaattt ccaatattaa tcggattgac ttttacaccg
     4801 tcaatcacaa ccgcagtatg gcgagattct gcccctcgta aaaataagct agtaagagta
     4861 ccacgcccac cttgttgccc aatcgccacg cccggcacag tctttaacac atcactcaca
     4921 taagtcgcat tgcgtgcggc aaaatctttt tcggtaagaa ccgtcacgct ggaagcggtt
     4981 ttgtcttggt tgattggggt tgcataggcg gaatagactg ttacggaatc aagctgagtc
     5041 atctcatttt gtgcaaaagc tgtacttgct agtgcaacag aaatggcgaa tgctgtggga
     5101 ttctattgat cgcctaagtc ctttaaaacc gaaatttgtt tcggtaactt atggagcaaa
     5161 ttctggtgag cgagatcgta cacacagtat tgtgaaatca atccaagaaa aaacagggat
     5221 catttcagct ccgcacttaa caggcattga tgcaacaccg gaagaattaa aggtaattgc
     5281 caaagattat tgggatagtg gtattcgccg aattgttgct ttgcgtggcg atataccgaa
     5341 aggttatgat aaagcactat tttacgcctc agatttagtc gctttattaa aatcagtagc
     5401 agatttcgat atttccgtgg ctgcctaccc tgaagttcac cctgaagcaa aatcagcaca
     5461 ggcagattta cttaacttga aacgtaaaat cgatgcgggt gcaaaccacg ttattacgca
     5521 attctttttt gatgtagaga gttatttacg ttttcgtgat cgctgtgttt ctattgggat
     5581 tgattgtgaa attgtgccgg gtattctgcc ggtgacaaat ttcaagcagt tgcaaaaaat
     5641 ggcagcagtg actaatgtta agatcccgac ttggatgggt aaaatgtacg aagggttaga
     5701 tgatgatcaa accaccagaa acttagttgc agcaagtatt gcaatggata tggtgaaagt
     5761 gctttctcgt gaaggggtga atgatttcca cttctatacc ttaaatcgta gtgaactcac
     5821 ttatgcaatg tgccatactt taggcgtaag acctgattta acaactgcat aatcgaacat
     5881 taaggctgta tagctaaatg agctatacct ccttatagtt ttacttctct tcagccaccc
     5941 aaatctcgcc attttttaat aataaatagg ctttgttgga atcggctttg gtttgtttaa
     6001 ttccagccgg cagggcggtt ggcaattcag tgatcttgcc tgttttatcc aacacaacaa
     6061 cttgttgata gcccatttgg ggtatcagtg cgaaagtctc tgttgtcgcc actaaattgg
     6121 tttcgtgatc accatagcgg tgattgctta agccggaggt aataaaacgt tcagctaatt
     6181 ggtttccttt caggctgtat tcaaccaaat tgccttttag atgtggcatt tggattgcat
     6241 agagcttgcg gttaaagata aacggcgatt gccaacggtt agtcgacagc ggctcacttt
     6301 cggcttctat tgataatttt ccgtctttaa cgccaatcac aacagtgctg gccccattgc
     6361 catcgccaga gataacagaa acgatcttgg tttttccatt ttctgtgaaa gtcgcccagc
     6421 ggttggcttc aaatactcgc ccttgttggg tgagtttttc tgctaagggg tttagggtat
     6481 ggcgttctag aaattgaatt tcgcctgcct ctacatcatc gcctaataca ccgtgttgat
     6541 atgtaaaatc atcaggcttt gcaagtacag caatatgccc ttggttaggt gtttcggcat
     6601 caaaatcaat ttgcagaggg tgagcatcag gcaacacctc ggtttctgcg gtggcagtaa
     6661 tagtggcttg gtttccttgc gtttcaattc tggctaactt aaattgtccg ttttgtttgg
     6721 tcacggcaat ggtggcaaaa ttaagggcgg tcattgtagc tttcggggca aggggaatgt
     6781 tggaggtata gattttatca gccgtccaca gcataaaatg cccgttttga tccgctaacg
     6841 caattcgttg gtattgagct ttaggttcaa tctcggtgga aactccatct gccagttttt
     6901 gagcttgttg tgtgactctc cataattgtt tttgttggtt aattaccact aattcgcctt
     6961 gttctgaaag gtcaaattgg cttactttgc caatttgggg aagtgggagt ggagaaagct
     7021 gaacatcagc aaacaaagaa gcggagaaca agcttaagat taacagaata gattttttca
     7081 ttagcgttac ctaaaaagaa gatttaaatg ataaagggag atgttatctc cctttacgct
     7141 ttagccttta taaccattcg ggttattttt ttgccaattc caagtgtctt tcatcatttg
     7201 ttctagccca cgctcggttt cccaacccag ttgctctaac gctttttgtg gagcggagta
     7261 gcaaacggca atatcgcccg ggcggcgatc taccactttg tatggaatag taatgccatt
     7321 tgcggcttca aaggctttta ccatatctag caccgaataa cctgttcctg tgcctaaatt
     7381 gtaaacgtgg aaaccggcat cattttggtg cttgtctaag gcttttaagt gaccaagtgc
     7441 taaatctacc acgtggatat aatcacgcac acctgtgcca tcgtgagtat tataatcgcc
     7501 accaaacacc gataattgag gtaatttgcc cacagccact tggctgataa acggcattaa
     7561 gttatttggg ataccgtttg gatcttcacc gattaaaccg ctttcgtgag cccctaccgg
     7621 gttgaagtaa cgcaatacta ccgcacttaa ttgtgggaag gctttaacgg tatcttcaag
     7681 aatgcgttca accatatatt tggacgtacc gtaagggttg gttgtgccac cgacagggca
     7741 agattccaca atcgggataa tctgcggatc accataaacg gtcgccgatg aactaaacac
     7801 aatggtattc acattggctt ttagcatctc ttctaccaat acaatcgagc cggttacatt
     7861 gttttgatag taacgtagcg gttctctgac gctttcgcct acagctttta aaccggcaaa
     7921 gtgaattacc gattcaatct gattttccgc aaaaattttg cgtaaaatat cacgatctaa
     7981 aatatcgcct tgatagaatt ttacgctctt gccggtgatc tgcttcacac gctcaagtga
     8041 tacttcagag gaattagaaa gattatctaa caccacgatt tcacgatttt cgtttaataa
     8101 ttcaactaat gtatgtgaac cgatgtagcc tgcaccacct gtaactaaaa ttgccatttt
     8161 atgttcctct ataaaattaa tacgaaccaa ggttattgtt gctattttac ccgatttaat
     8221 caggcttgct aatatttatt cagtttataa tgccactccg gcttccggca gtaattccgg
     8281 aatgccgttt ttaatcgggt aagcaatatt gagcttaggg ttaattaatc ggttgttctc
     8341 tttgtcccat tctaattttt cattagagac agggcagacg aggttattga gtagtgtttc
     8401 gttcatcttc ttttcctagt ttttgtagaa tcggggctaa caaacaagcg gtcgattttt
     8461 ctgaaaatgt tgcagaaacc ggtacatacc accaatttgg ctgtgcaaaa tcgtggcatt
     8521 ttaccgcatc tttctcggtc attaataacg gcgtttggct atcagcaaat tgagccagct
     8581 gagccttatc aaaggcttga tgatcggcaa agccttgagt tttggcaagc ggaatgccta
     8641 atttttctaa catcgtaaaa aagcgtggtg ggtgaccgat accggcaatc gccacacagg
     8701 gttgggtaaa ttcgcttaat ggcttgcgtt gattggtgac taaattaatt gcatcagacg
     8761 gttcaagcgt cattaaatgc tcgttagctt gcggtgtgcc gccgttgcaa ataaccgctt
     8821 gcacggagtt taaacggctc ggtaattcac gcaatccgcc cgccggcagc acaaaaccgt
     8881 taccgaaacg ccttacgcca tcaaccacca cccattccat atctcgctgt agggcatagt
     8941 gttgcaagcc atcatcggtg atgatgatgt ccggctcaaa ctgatttaat agtaattcaa
     9001 tgctttgttg gcggtttgga gaaatagcca aaggcacatt ggttcgctga acaatcagaa
     9061 ccggttcatc acccaccatt tcagcagaac tttctcgggt aactaattgc ggaaacgttt
     9121 tcgctttacc gccatagcct cgagaaatca cgcctacttt tacgccacgc tgttgcagtt
     9181 gttccaccag ccaaacgacc actggcgttt tgccgttgcc tccaaccgag atattaccga
     9241 ctaccagcat aggcaaaggc gaacggtacg attgcaaaat attcagagaa tataaccgct
     9301 tgcgagcttg actaatcagc caaaacagca acgaaagcgg cgaaagcagc caagtgataa
     9361 gggattttgt ttgccagatt ttcatattat ttatttttaa gtgtttcaac taaatctcgt
     9421 aataaggcta attcacgttt ttggttttcg ataatttctt ctttatgggc taataattca
     9481 tctttgtggg agataataag ttgtaaacgt tgaatttctt ctactccatt tcctaatgag
     9541 ataaatgaat tagtgagatt attatctgta ttatttatgt aaatttttcc ttcttcccca
     9601 taggataata attcgcaaat atccatatta aatacttctg cgatttgttc tattttcggt
     9661 aaattagaga tagtttcacc acgttctatt tttgcataac ctttggttgt catacttaat
     9721 ttttgagcca tttcatcttg tgtccaatga ttattttctc gcagtaattt gattttttcg
     9781 tgtactttca tataacacct atagattgtg ggagttggga tataacttga tgtggtaaag
     9841 gataaatttt gtggattgta gcagtttatt gagcaattta gaatagagta aattttatct
     9901 taagctcaca ggagaagaaa cattcatgaa taatcaatat aatccattat atggaatgct
     9961 aggtatttta gcgtcagctg catcagtaat tttgcctctt tatgcagcat ataaagacta
    10021 tcaatttggg gagaatatgt tatctcttat ggatataatt attttcccgt taggtattgt
    10081 tcgtggactt atgtatttat ttggatagat tatgaaaaaa tatttatttt ttgcttttat
    10141 gacattaagt aatgttgctt atcctaattt agatgagtgg tactcagctt cagataaaga
    10201 gcgaagagaa tttatcgcaa aacattttgc agaagaaaca gtaagaagtg atagaaatac
    10261 accgtatgat tatgctatgt gcactggtag aatgtttgct aaacaactga ctcgagatga
    10321 agtcaaagac taccctttgg caaacactaa gccgcaatat ttaacccgtg atagacggat
    10381 tgagattatg tctaatttac ctcgtgaaat attacaaaat tgtgctaaat acatacagta
    10441 attttatgag taacaccact ttggaattaa gtggtgttat tttaatttta ataatgtctc
    10501 taaaatcatc tccaacataa actcaataaa gccggtagaa tcattttggc tgtctgcgag
    10561 agaaagcatt tgataataac gttgttgatt ttcgtaaacc attgtttcaa tcggcaacca
    10621 agcgaaaagt gggttccatt gtgctaaaag gacattttgc cataatcgac ccattctgcc
    10681 gtttccatca ctaaaggggt gaatcatttc tatttcatag tgcataaccg agcttttaat
    10741 gagtgcaggt gtatcatctt gtttagccca agagaacaac tcattaatca aattctctac
    10801 gaattgagga cgagccccca tatgcacaag ttgcccactg aaattataaa tgccgacatc
    10861 ttttgaacga aaagcccctg cgtcatttac taagtcagca gtaagaaact tatgtgcttt
    10921 gagaaaatct ttaatcgagt aaggattata gtgcatcatt tcatcgtaag cgtcataggc
    10981 atttttgact tcacgaatat ctttggggtg tccgagaacc tttttgccct taatgattgc
    11041 ggtaacttgc tcaatcgtta atgaatttgc ctcaatagct aaagaggctt gaattgatct
    11101 caagcggtta ttttttctaa gatgtaaatt acgctcaaaa tccaattgta gcgttcccaa
    11161 tttatgagaa atttctacaa ccagattcag cattttagtg gtaactgtaa aaggtggttt
    11221 ataagccatt ttgcaataat cctaaaaaat taaaccgctt gtcattgtta ctccaccttc
    11281 ggcttatcgc cgttttcaac acagcctttg ccgatggtga cttttttcgc attgagggtt
    11341 gggagatcgt acattgtgtc aagtaataag ttctcgacaa tagaacgtaa cccacgagcc
    11401 ccggttttgc ggctaatcgc tttttgggca attgaaatta atgcatcttt ggtgaagtgc
    11461 aattcaacgc cttccatttc gaataaggct tgatattgct tgatgatcgc atttttcggc
    11521 tcggttaaga tttgaatcag agcttcttcg tccaattctt gcagcggagt caccaccggt
    11581 aaacgcccga ttaattcagg aattaagccg aatttgacta aatcttccgg ttcaacttgt
    11641 ttgaatagct cggttaaatc ttggcgatct ttatcttttt tcaatgccgc tgcaaaaccg
    11701 ataccacctt gagtgttggt acgggcttcc acgattttat ctaaaccggc aaaagcaccg
    11761 ccgcaaataa agagaatttt ggaggtgtcc accggaatgg tttcgccttt cgggtgtttg
    11821 cgaccgcctt gtgggttaat gttcgccacc gtgccttcaa gtagttttaa taaggcttgt
    11881 tgaacacctt cgcccgatac atcacgggta atggatgcac tttccgattt acgggtgatt
    11941 ttgtcgattt catcaataaa aacaatgcct cgttccgctt gttcggcttc aaaatcgcat
    12001 ttcattaata atttttgaat cacgttttcg acatcttctc ccacatagcc tgcttgggta
    12061 agggtagtag catcagctac cgcaaaaggt acgtttaaac ggcgggcaag ggtttctgcc
    12121 aacaaggttt taccgctacc ggtcggcccg attaataaaa tattactttt acctaactct
    12181 acgccattag tggcttgatg gtttgacaat gcacttctta agcgtttgta gtggttataa
    12241 acggccaccg aaagcacttt tttcgcgtgt tcttgaccga tgacataatc atctaaatga
    12301 gcgtgtaatt cgtgaggtgt cggcacattg gtgaaaaaac tgccttcatc gtcttggttt
    12361 tcatcaatta acggctcttc ttcaccgtgt aataaggcgt aggattcctc gatacattca
    12421 ttacaaatat agccttccgt gccttcgact aattgatcga cttcggtacg ttttttaccg
    12481 caaaaactac agtggggttc tttttcaaat gccattacgc cacctcactg cgagaagtta
    12541 atactttgtc gattaagcca tactcagcgg cttcttccgc agacataaaa ttatcacgct
    12601 cggtatcggc taacactttt tcatagctct gaccgctgtg ttctgccata cggcgggtaa
    12661 gggtagcttt caagcgtaaa atttcttccg cttgaatttg aatatcggtt gcttgacctc
    12721 tcgctccacc taaaggttgg tgaatcataa tacgagcgtg cggcagagca aagcgtttac
    12781 cttttgcccc ggctgaaagc aaaaatgccc ccattgaagc cgcttgccct gtgcaaaggg
    12841 ttgctacatc gggtttgatg aagttcattg tatcgtaaat tgccaagcct gctgttacca
    12901 cgccacccgg tgagttaatg tataaataga tgtctttttc cggatcttcg gcttctaaaa
    12961 acagaagttg tgccacaatc aggtttgcca tattgtcttc cacctgaccg tttaaaaaaa
    13021 taatacgttc ttttaataaa cgtgaataaa tgtcgtaaga acgttcgcct tttgaggtct
    13081 gttccaccac cattgggact aatgccattt tgttttcctc tgtcgtaata caaaatctcg
    13141 ctattctagc aaattttcag aaaatcatta acaacaagcg gtcagattgt taaaatcttt
    13201 tgcaaatgat gaggaaatta tgacattaac agaaatttac caaaaatttg aacgttgtaa
    13261 atcgtgggaa gaaagatacc gcttgttaat tcagctaagt cgcttgttac caaaaccaag
    13321 tgagcaagag ttggcacaaa tagcggaaat tgagggctgt gaaagccgtt tatggtttga
    13381 atttcaagct gagccacgaa aagtagtggc atatagcgat gcccgtttaa tgcaggggat
    13441 tttatttatt gtgagtgtag ctttaactga aaaaacggca gaagagctga aaggctttga
    13501 cttaaaaacg atgtttgatg agctaaaaat ttcacaaaat ttaaccagca caaggttaaa
    13561 tgggttgggt cagttacaga aacatataat gatgaatttg taattcaccc tcgccccttg
    13621 tgggagaggg tgaataaaat ccgcaggatt ttattcggga gaggggaata taaaaaacct
    13681 ctgatttctc agaggcttaa atttgttggc ggaacggacg ggactcgaac ccgcgacccc
    13741 ctgcgtgaca ggcaggtatt ctaaccagct gaactaccgc tccatactgg tgctaaaata
    13801 atagtggttt cctcaacatt gagcaaatag tttttgcaaa atagtgttta attggttgta
    13861 aaataaccac tttatttctg cttgatcgcc ttgataaaca gcaacggcgg acggtgctgt
    13921 aaatctttaa attcattgtg ccaccgaggt tggcctgcca gcattggttc ttccatttgc
    13981 acaatctcaa acccgccttg aataaggtta ttcacaatgg ttgccattgt gcggtggtag
    14041 gttttaaagg gttgttgaaa ccaacttctg tcccgttcgc cctcttcccg ataatagttc
    14101 aagcggtaag caacttgttg tttttcttgg tttttctccc aacgatagcc ttctcggtaa
    14161 caggtgacaa tcgggtgttc ttgcgagaaa atcagcgtgc cacaagcagt cattttttgc
    14221 gaaatttttg caagtagttc ggaaaaatca gcaatataat gaaacgcaaa agagctggtt
    14281 actacatcga aatcgccctc gctgatctca tttaatcgct ccatcggcag gcagtaaagg
    14341 gaaaaatcgt tgcctttttg ccaatgagca gaaagatcgc tttctgcctg ttgtagcatt
    14401 aattcagata aatccaaccc caccactttt tctgcaccga gcgttaaata atgggctaaa
    14461 tgaactcctg tgccacaacc taaatccagc acttttttgc cggttaagtc tggcagtaga
    14521 gagaacattg ttggcttttc caccacttca ttcatactta ttggattttg tcgaagttgt
    14581 tggtaacgct caaagaaaat cggagtgtcg taaatgcttt ttttcactta atagccttta
    14641 aacaaatata aaataaggcg ggttaaaacc cgccactacg atatgattag taagtcgata
    14701 attttcgcaa agtttctaac gcttttccac tctcaagcgt ttcttttact ttttgcacat
    14761 tggcttttaa atcatcttct ccaaaggttt tcattaataa tgcgacattt gctgccaccg
    14821 catcaatatg agccagttta ccttttcctt gtaaaatagc ggttactttt tcggcatttt
    14881 ctgcaggttc accgcctttg agatcttcta acgaatggcg ttcaatgccg aaatcttccg
    14941 gcgttaaggt gtaatagtcg atctgtccgt tttgaatttc cgcaacctgc gtttcgccgt
    15001 gaacggcaac ttcatctaaa cctgcaccgt ataccacaat agtgtgttcg taacctaagg
    15061 cttttacggt ttcagcatag actttcacta actcagggga gtacacaccg agtaattggc
    15121 gtttagcgtg agccgggttt accaacggcc ctaaaatatt gaaaatcgtg cgggttttta
    15181 aggcttggcg aacaggggcg gcatatttga atccgctgtg gtaggttggg gcaaacaaaa
    15241 agcagatgtt ggtttcatct aaagcaaggc gtgccgtttc aggtgaaacg tcaacattaa
    15301 tacctaaatg gcttaataca tcgcttgagc cggttttact tgatacgcta cggttgccgt
    15361 gtttggcaat tttatagccc attgtggcgg caacaatcgc acttgtggta gaaatgttga
    15421 tggtattatg cccatcgcca cctgtgccga caatatccgc aaaagggtaa tcaggcgttg
    15481 agaacggatt ggcattttca agtgcggctt ttgcagcacc tgcaatttca tcaacggttt
    15541 cgccacgcag ttttagagcg attaaggcag cagcaagttg ttcatttgat acattgcctt
    15601 taataacttc actaaaaaaa cggtgagatt ccgcttgggc taaggcttgg ttggcgaata
    15661 atttatctaa aagtgcttgc atagtctctt cctttttaat tagcgatgtg cctgatattc
    15721 caaatcggtt gcctcgttgc cggtcattcc acgaaagccc cagcaatgct ctggctgttc
    15781 tttaatggtg atttcaacgt ccattggcac aatgccgact ttggtgtgta aggcactaaa
    15841 tagtccttta attaagcgtt ttttgagctg ttcgctccgc ccttgcatca ggtttatttc
    15901 aatcacaata aaatcttggc tacggttaat tgggggatag aaattttccg catccaataa
    15961 gtcaaaacgc aaagcgtggc gttgttttgg tacgccaagg ctcatttgca tacagtcaaa
    16021 aatcacgtct gcaatcaggg ctctgcggtc tgctaaggtt tgttttaatc catatacact
    16081 aatcattttt ttctcctaat aaccattcca ccgactgctt aagtaatttt gtgccttgca
    16141 cggttaaaat ggattccggg tggaactgga aaccgcaaat cggtaaggtt ttgtggcgaa
    16201 ttgccatcac aatatgttca aatttcgcat taacgataaa ttctgccggt aattcatcgc
    16261 ccattaatga gtgataacga gcgacaagca ttggattgtt aatgcctgaa aacatcgctt
    16321 ggttatcgtg ttcaatacga gaaactttgc cgtgcaatac tgtgccggta tgcactactt
    16381 tgccgccaaa ggcctcaatt agagcttgat gtcctaaaca aatgccaatc atcggtactt
    16441 tgtctttcag acggcgaata atttccaata aattgcctgc ctcagccgga ttacccgggc
    16501 cgggggaaag ggcaaccaaa caattttcgg tggtttcagc tttggctaaa aaatcctcaa
    16561 gcggataatc attgcggaaa atcgttacct gatgccctaa ttcacgaaat tgatcgacca
    16621 agttataggt aaaagagtcg aaattatcaa taaaaagaat atttgccata gtttgtcctt
    16681 atgcttttgc attcacctgc ccaatcgctt ttaacaccgc gcgtgcttta tggcgtgttt
    16741 catctgcctc taattgtgga tcggaatcca gcacctcacc acaaccagct tgcacatagg
    16801 caatgccatt ttgaacaaag gcggaacgga tcacgataca ggtatctaaa ttgccgtctg
    16861 aggttaaata gcccaccgca ccgccgtagc tatggcgttt ttgttgctcg acttggtaga
    16921 tcagttgcat tgccttaatt ttcggagcac cagttagcgt tcccatattc atacaagctt
    16981 gataagcgtg cagagcgtca agatcttttc taagtgtgcc gatcacacga gaaactaagt
    17041 gcataatttg cgaatagcgg tcaatttgca ttaaatcaac cacacggcga gtgccggatt
    17101 cgctcacacg agccacatca ttgcgggcaa gatcgactaa cattaaatgt tcggcaagct
    17161 ctttttggtc taaacgcagt tctaattcca aacgggaatc taattcagga tcgatattac
    17221 cttgttcatc aaaaccgcgt gggcgagagc cggcaatcgg gtaaatttcc aactggcggt
    17281 tggcttgcga atatttcaac gcactttcag gcgacgcccc aaacagagtg aaattttcgc
    17341 cctgcatata gaacatatac gggcttggat tgttgatttt gagctgttta tagctggcaa
    17401 gagtattcgg gcaaggcaag ctgaaacggc gagagggcac aatttggaac acatcaccga
    17461 tattaatatg gtgtttgagt ttgcggataa tcgctttgaa atcttcatct tcaatattgg
    17521 cggttgcctc actcgttgcg gtttggttcg ctagaggcag ctcaatatgt gacagatttg
    17581 caagtttttg cgtaaattcg accgcttgtt ggttcaaatt ggtttgttca ttcggttcaa
    17641 aacagaaggt gtttagcacc gcagtttcgg tttggtggtc gattgtaacc agttgctctg
    17701 ctaaatagaa agtgtaatct gggcaactta agccatcatc ttgcaggctg atattttcca
    17761 tcggaataaa atttgccacc aaatcgtagc taaataatcc gcccaaatag ataggcgatg
    17821 tggaatcagc aaacagttgg ctcaccgttc ttagcccgtc aaacacggtg gtggttttga
    17881 gcttgctgtc ttcatctaac tggttgctga tggttgggaa aatcgcttgc aagcggtcgt
    17941 ttttgtctaa aaatttgcaa gtcggagcag ggtttaacag gctcaatgcg tttgcaatca
    18001 aaggtaaaac cgcttctccg tttggggtta aagcgtggaa agtcacggtt tgatcttcac
    18061 agaaaatatg cactgccgat ttcgcaaaca gcaaactttt tacactgttt ttactttgaa
    18121 tttccgctga atctaataat agcgtatgtg ggcgttcgcc gcataatgcg taataaacac
    18181 gggtcgtatc ggcaaaatag ggtaattctg tttgagtaat cgttaattga ggcatagcaa
    18241 attcctattc aatttttcgt actattaaac tagtacatta aaaagaagtc aagcaattat
    18301 tccagataat tatgcgagct tgggcgaact tggtgtataa ttagcccaat ttttagaaag
    18361 tcgaaggctt gagactatga cacaattttt ttatatccac cccgacaacc cacagcaacg
    18421 cttaattaac caagcggtag agattattcg aaacggtggc gtaattgttt accctaccga
    18481 ttcaggctat gctctcggtt gtgcaatggg cgataagcac gcaatggata gaattgtagc
    18541 aattcgtaaa ttgccggaaa atcacaattt taccttagtt tgtagtgatt tatccgagct
    18601 ttctatctac gcgttggtca ataatcaagc ctatcgctta attaagaata ataccccgaa
    18661 tccttatact tttattctgc cggcaactaa ggaacttcct cgcaggctga tgacaaagcg
    18721 taaaacagtg gggattcgtg tgccggataa tgcgatcgca ttggcgttaa tttccgcctt
    18781 aggtgagccg attctttctt gctcgttaat gttgccggag acggaaatga ccgagtcaga
    18841 ccctgatgaa attcgggatc atttgcaaaa tcgggtggat ttaattatcc acggtggtta
    18901 tttagggcag cagcctacaa cggtagttga cttaaccgat gacgtgccgg ttattattcg
    18961 agaaggatcg ggcgatccaa catcgtttaa ttaaattgat gttgtatgat taatatatag
    19021 aattatgcgt aggggggctg tgccagtccg tattaatatc gttatttgga caggcacagg
    19081 acctgtccct acaatgaaaa tcaaattcag acgcttgtga aagcgacaaa aggaacctta
    19141 tgacaacttt tcaaaaaaaa tcaactgcga ctttccgtgc agacaaacgt ggtgaaagcc
    19201 gtccctcatt taaaaaagaa gagcaaaaat ctgaacgcaa atttggtaaa acgtcagaaa
    19261 aaccaccacg tccaacttct aagccattaa cgcaaagaat tgcaaaaaaa gtggaaaaaa
    19321 cgaccgctag tgaagtggca tctcaagaga aaaaagccaa agtagtaggt gaaaagctac
    19381 aaaaaatctt agcgcgagca gggcaaggtt ctcgccgtga attagaagag attatcgctg
    19441 ctggacgagt gagcgtggac ggtaaaatgg ctactcttgg tgatcgtgtg caggttagct
    19501 catcgactaa aatccgcatt gacggacatt tagttaattt aatgccggca caaaaagaga
    19561 tctgccgtgt attaatgtat tacaaaccgg aaggggaact ttgcacccgt tccgatccgg
    19621 aaggacgatc caccgtattt gaccgcttgc ctcgtttaag tggcgctcgt tggattgcgg
    19681 tcgggcggtt agatattaac acctcaggct tattattgtt cactaccgat ggcgaattag
    19741 ccaaccgttt aatgcaccca agccgtgaag tcgaacgtga atattcggtg cgtgtgttcg
    19801 gcaacattga cgatgcgatg ttacaacgct tacgcaaagg cgttcagttg gaagacggac
    19861 cggcaaactt taaacaaatt aaggttgtgg gtggcacagg cttgaaccaa tggtttgatg
    19921 tgactttaac cgaagggcgt aaccgtgagg ttcgccgcct gtgggaatcg caaggggtag
    19981 aagtcagccg tttgattcgt atccgttacg gcaatatcaa attagataaa ggcttacctc
    20041 gtggcggctg ggaagaaatg ggcttagaac aagtcaatta cttgcgtgag ctggtagggt
    20101 taccgccgga gactgaaact aaagtggaag tgggggtaaa ccgccgccga accaatatcc
    20161 gtcaaattcg taaagcggta aaacaacatc aaaaatatcg tggctaaaca ccatctttgg
    20221 ggctgcatta gttctgctaa tgcagctatt ttctttcaaa aaaggagcat ttatgtcttg
    20281 ggatattgtt gcaacattgg cggtcactgg gattgccgta tttttatttg caactgaaaa
    20341 aatgcgaatg gacgtagttg cgattttagt gctgtgttca ttagtattat tagggcaggt
    20401 tgataccaaa tctgctctga gtggattttc aaactcagct actgtaaccg taactgcaat
    20461 gtttgtatta gctgctggtt tacaaaatag tggtgcttta gatagtgtag gcagtttact
    20521 tgctaaggta aaatctcctt ggttattctt gcttgtactc tgtggcgtaa atgctgctgt
    20581 ttctcctttt gtgaataata cggcagtggt cgcagtatta attccgattg tgattgccgc
    20641 agcacagaat ataaaaatgg ctccttccaa agcccttatt ccgttatcat tttcttctca
    20701 aatggcaggt gtttgtacac tgatcggcac ttccactaat ctattagtta atgcaatcgc
    20761 tcaaaagcaa gggcattccg gtttcggtat gtttgaattt gcccctttgg ggattatttt
    20821 tttagtggtt ggggttgcct atttattagt gaccagccgt ttcttattac ccgaatcaca
    20881 tttgcaactt gaagatggtg aggggtttgg aaaatatgtt tctgaactta aagtaaataa
    20941 agactctgta ttaattggca aaagtacatt tgaatcagga ttaaatgaag aatttaatct
    21001 atttactatt ggtgttttgc gtgatgggga aagattatcg acaccgagtc atcaagtatt
    21061 gcaaaaacat gatattttat tgttgcgggg tgaatcggaa aatttagcaa aagtacgaga
    21121 aaaatatgga ttgcaccacg ttgtgtatgg acgccgtgag aatgatgaag ataatctgga
    21181 tgaagacttg atggtggctg aagtgatgat ttctcctatt tctcgttgga taggagggac
    21241 tattcctatt ttacaacagc gttggaataa aaatgcaacg gtgttaggca ttcaacgcca
    21301 aagtaaagta attcgtgagc gtttacgcac cactgctttt aaaatggggg atattttatt
    21361 actcacatta ccaaaagagg atatggagac gttacgccaa gataaagact ttattgtgtt
    21421 atcttctgat ttagtcaaaa cggaggaatc gtggaaaagt aaatttgctt taggggtaat
    21481 ggttttggtg gtggcaacag cagccttagg ctgggttcct atttcagtga gtgccttaat
    21541 tggtgcagtt gcgatgtgtg ttgctggttg tttaacggct gaagaagcct atcaatctat
    21601 tgactggaaa atcattttag tcttagctgg attactgcca ttaggtgaag cgatggcaaa
    21661 tagtggggcg gcgcaattta ttgttgataa cacgcttggt aaagtagggg agttcgggcc
    21721 tttagtggtg ttagctgtat tatatttact gacaatggtg ttaaccgaat ttatgagtaa
    21781 tgcagggact gccgtgttgc ttacgcctat tgcggtttct accgctaaaa tgttaggggt
    21841 agatgcttcc ccattcatta ttgccgtaat gtttgcggct gcgaccagct ttatgacccc
    21901 tgttggctat caaaccaaca cgatggtata cggtgcaggt ggctataaat tcacagattt
    21961 tattaaaatt ggtttaccgc taaatgtaat ctattggatt ttagggatag tattaattcc
    22021 gattttcttc ccttttaatc cataattgat agataattat agaaaaaagg tttacagatc
    22081 agaaactctg taaacctttt ttattcagca ataaatcaat tttctattgg aaaattacca
    22141 ttgataaccc atgccaatac taccaccaaa gtcgcctctg gtattgctgt taccagttaa
    22201 tttatagata accttcccgt tatctgaaat ccgagaataa cctactgcga ttgcagcttc
    22261 attacggtat gtatctccag ccgttgctaa catactttta cctggtagat atgcttgcgg
    22321 taaacctgcg gttgcagttg caccagcaat accagcgcgt aaacgtttat caactttgtt
    22381 tacttttgaa tcaatattat tgatcttatt attgatattt ttttctgttg cttttaattg
    22441 gctaaagtta actgcatcag tatcttcagt tcctgctttt acgttagtca cttttgttcc
    22501 tgctgcatta atacctgttt tagttatact cggtccccct acaatagtta atccattagt
    22561 atcaatggtt gtatcaccag tcttaacagt atcggctaca gcaatgttag ctgttactgt
    22621 ttgagctgtg acagaattaa ctttaatatc tttagctaat ttaaccgtta atgaaccatt
    22681 accatttgaa ataaccccga tattattatc agttagttgt gattcgttag ataccccacc
    22741 ttttactgta acagtagaac ctaatttacg ttgagatggc gtgccggtat cacctgcaaa
    22801 tgttagtggg ctggttactg catcatttaa cgcagtaatt gcagagccta cattattgac
    22861 cgttttacta acttcatttg taggagcgcc atcaaccaca gtatagcttg gggctgaaac
    22921 agcaccattt gcatttacac ttgaattacc acctaaagcg gtagcaatag tatttgccgt
    22981 atcgtaaagt tggctaccat taactgcatc tgctgagata ggtgaaatat caccatcagc
    23041 tacattagtt atttttaatt tgccagcatc gacacctgtc attgtgacac ttgggccatt
    23101 attaatggtt aagccgttgt tatttagttt tgaattacca acagctacgg agccggcagg
    23161 agttaaatca atgtctttcg ctaatttaac tgttaatgtg ttagcatctg ttgccactac
    23221 accgatatta ttatcagtca atatggttgc atcggcccca cctttaacat tcagagaagt
    23281 acctaattta cgaacaattt cagtaccagc atcatctaca aaagtaagtg ctccattact
    23341 taactcattc actttcgtgt ttaaaccatc aatttcggta taagcagcat aaagttgtga
    23401 accgttgata gcatccgttg atgagtccaa aatacgacct gctgcaacat tcgttaaagt
    23461 acgttcattg cctacagaac caatacttac agttgagctt ggcgtagtac ctgcaaatgt
    23521 gtatgtattg ccatttagcg ttgcactttt tgttgcaact gtggctactg tttcagagtt
    23581 agtacctaat gcaacagaac cttggtgtgt tgcttttgca ttttggccaa gagccactgc
    23641 agcagttgtt gttgcttgtg atgaaacacc taatgcaata gaagctacac cggctgcatt
    23701 tgcactatta cctaaagcaa tcgcagagct acctgcagca ttggcatttc tacccacaga
    23761 agttgaccat attccacctg cattagcaga gttacctaaa gcggttgact gtgtacccga
    23821 agcatttgcg ttatagcctg cagcaagaga atctgcaccg attgaacttg cttcataacc
    23881 tacagcggtt gaattttcac cggtagcttc agatttagag cctaatgcag ttgcacgggt
    23941 agctgtcgct gttgaagctg taccaatagc tgttgaggta tcagcatttg cattggctgc
    24001 agaaccaacc gcgagggcat ttgttgcatt tgcattcgca ttgtagccta tagaagtggc
    24061 attcatacca tcagctgttg cgcgaggacc aactgcagtt gtacgttcac cgtttgcttc
    24121 tgcttcagag cctaatgcgg ttgccagctc accattagca cttgttgcaa cgccgatagc
    24181 cattggatta acaccgctag agcctgaatt atcatagtta gcacgttgaa tgccatcatc
    24241 tgaaatacta acataatgag ttgcaaattt gctgatagct tgtttgagtt gactgacatt
    24301 gaccgcatca gtatctacat cgcctgcggc aacattggcg attttattac cgccattatc
    24361 taagccagat ttagtaagac ttaccggttt gtctgcaacg ccgttagcga tggtgatacc
    24421 tgtattgtta acaacggtat cacctgttgt taatgaacca ttagcgccta agttaacttt
    24481 ttctgctaat tttatggtta aagtactatt gccatcagct acaacaccaa tattattctc
    24541 ggttaatatg cctgtagatc cgcctttgat cttgactgtt gaacctagat ggcgctcaaa
    24601 attagttcct gtatcaccgg caaaggttaa cggactgatc accgctgtgt ttaatgcgct
    24661 tagtgctgca gaaacagtag tgtatctccc ttgtttgcct tctttatctg catctggtgt
    24721 gccattcact aaagcgtagg ttgggaaagt gatatttcca ttttcagtaa cagctgcccc
    24781 accacctaag atatttgcgg ttgttgcagc aacattacct atagcttgtt gtgttaaata
    24841 taattgtgaa ccgtttatgg tatctgtaga gcttaaagat atacgtcctg cagcaacatt
    24901 ggtgatagtt ctctctttgc cttccgcccc aatacttact gtagcaattg gatttgttcc
    24961 agcaaagtca ctatatgtaa taccatttac agttgcattt gtagttggta tggctatagc
    25021 tgtaactgag ttgctaccta gcgctatcga atcggtatgt tcagcagtgg catttcgacc
    25081 tatagcggtt gcattaaagg cggaagcatt tgatgattct ccgattgcaa ttgtgcgttg
    25141 atttgttgct ttagcgctta cccctagtgc aacagaagcc gcgcctgatg cagtagcacg
    25201 attgcctaaa gcggttgcag aacctccact tgcattggct tcacgaccaa atgcagaagc
    25261 ataatcgctg gttgcacccg cattagtacc aacagcagta gttaaatttg ctgttgcatt
    25321 tgcataataa cctaatgagg ttgcaccgtg gcctgaagtc ttcgcttcat aaccaattgc
    25381 tgttgagtta tcgccatttg cttgagattt tgcaccaatt gctgtggagt gaatagctgt
    25441 tgcgttagct tcagcaccat aggcggagct aacaatacca gttgcattgg catgactacc
    25501 tacagcagtt gcttttccta ttaccgtttc tcctgttgct gctgtagttt tgtaattatt
    25561 aacaccattt gcaagagcgg aattaccgat ggcgatatta tcatcactgg ttacatttgt
    25621 agtaggtcct gctagttttg cattagcata agtaccaatt gcaatattgt ggctaccact
    25681 agtaccgtct ccagcagtat taccaataga aatcgtattg tttcctgtta cattagagct
    25741 agccgaataa ccaataccaa tattgtattc tgtgctgtta gagtgattta atccggcatg
    25801 atcgccaata aaaacttcac gtaagcccat tgcggttgca ttgtacccta ctgctacgga
    25861 acgtttatcg gcagtggctt gcccaccaac agctgttgaa gcaaaactag cgttagcaaa
    25921 gcctcctaat gcagttgaaa aatcggctgt cgcggttgtg ttatacccta atgctgtaga
    25981 aactttaccg ctatttcctt ctaagcctgt tattgtgctt actagtgttg agttaacttt
    26041 agatccatca ccaattgcga tagatgtttg tgggttatta tctggtatgg tcccataggt
    26101 tggtgaatag gttgcagcac ttgcaaaacc tgcagaaagc gcaagactta gtgtgctgag
    26161 tttaataata ttagtggtta gtgatgtatt tgttgcatta gatttattag cacttcttga
    26221 taattcagaa gcaacaatcc aagttcgttt tgcatggttc caaacaatgc gataaatttt
    26281 attcatagaa ctactcctgt tcttattttt taataatttt aatgatttga gtattgccta
    26341 gcca
//
LOCUS       DANMGB010000012        25195 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.012, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000012 DANMGB010000000
VERSION     DANMGB010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25195
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.012"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            127..522
                     /locus_tag="PXG19_000404"
     CDS             127..522
                     /locus_tag="PXG19_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL6065736.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(683..2254)
                     /gene="guaA"
                     /locus_tag="PXG19_000405"
     CDS             complement(683..2254)
                     /gene="guaA"
                     /locus_tag="PXG19_000405"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL6065737.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(2271..2582)
                     /locus_tag="PXG19_000406"
     CDS             complement(2271..2582)
                     /locus_tag="PXG19_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065738.1"
                     /translation="MKKLSLISIVALSACSIFGPSYSGETTASPLLKLDTERNINLYF
                     QAIHKCTPDKIHTKIINIPSEGNAKELWTATGCNKTQSFIITYRNDGVGGTFINMTTT
                     P"
     gene            complement(2704..3375)
                     /locus_tag="PXG19_000407"
     CDS             complement(2704..3375)
                     /locus_tag="PXG19_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL6065739.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
     gene            complement(3496..4959)
                     /gene="guaB"
                     /locus_tag="PXG19_000408"
     CDS             complement(3496..4959)
                     /gene="guaB"
                     /locus_tag="PXG19_000408"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL6065740.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            complement(5187..8354)
                     /locus_tag="PXG19_000409"
     CDS             complement(5187..8354)
                     /locus_tag="PXG19_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL6065741.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENGLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            complement(8368..9573)
                     /locus_tag="PXG19_000410"
     CDS             complement(8368..9573)
                     /locus_tag="PXG19_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6065742.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            complement(9604..10176)
                     /locus_tag="PXG19_000411"
     CDS             complement(9604..10176)
                     /locus_tag="PXG19_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL6065743.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            10415..10636
                     /locus_tag="PXG19_000412"
     CDS             10415..10636
                     /locus_tag="PXG19_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL6065744.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            10641..12374
                     /locus_tag="PXG19_000413"
     CDS             10641..12374
                     /locus_tag="PXG19_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL6065745.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(12441..13142)
                     /locus_tag="PXG19_000414"
     CDS             complement(12441..13142)
                     /locus_tag="PXG19_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6065746.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(13139..13519)
                     /locus_tag="PXG19_000415"
     CDS             complement(13139..13519)
                     /locus_tag="PXG19_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6065747.1"
                     /translation="METLAIFLFSEIWKFDFVFTFIFKILKINVFFSDLINMKLARKA
                     QRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSFQMEPSSAGIMMTVYAWVVFLL
                     SLPLMLLTANMERKRLLLMLFMGE"
     gene            complement(13561..18021)
                     /gene="mukB"
                     /locus_tag="PXG19_000416"
     CDS             complement(13561..18021)
                     /gene="mukB"
                     /locus_tag="PXG19_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL6065748.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(18197..18913)
                     /gene="mukE"
                     /locus_tag="PXG19_000417"
     CDS             complement(18197..18913)
                     /gene="mukE"
                     /locus_tag="PXG19_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL6065749.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(18962..20305)
                     /gene="mukF"
                     /locus_tag="PXG19_000418"
     CDS             complement(18962..20305)
                     /gene="mukF"
                     /locus_tag="PXG19_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL6065750.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(20570..21457)
                     /gene="galU"
                     /locus_tag="PXG19_000419"
     CDS             complement(20570..21457)
                     /gene="galU"
                     /locus_tag="PXG19_000419"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL6065751.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(21593..21778)
                     /gene="csrA"
                     /locus_tag="PXG19_000420"
     CDS             complement(21593..21778)
                     /gene="csrA"
                     /locus_tag="PXG19_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL6065752.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(21868..24495)
                     /gene="alaS"
                     /locus_tag="PXG19_000421"
     CDS             complement(21868..24495)
                     /gene="alaS"
                     /locus_tag="PXG19_000421"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL6065753.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
     gene            complement(24690..25115)
                     /locus_tag="PXG19_000422"
     CDS             complement(24690..25115)
                     /locus_tag="PXG19_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6065754.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
BASE COUNT         7149 a         5760 c         4762 g         7524 t
ORIGIN      
        1 acattttttg ctgataatct ttcaaaattg aacctatatc acattttaat catttggagc
       61 ttttcaaata aaaactgaaa tgttaaaaat agcagtaatc aatcactaaa acataaggag
      121 tttatgatgg aacaatggac aacagatgtt tgggcagcca ttatggcagc atttattgta
      181 ggtgctgtaa taggttgcac tctagttaga gtatttaaca gtagtgtcag aaaacagcat
      241 gaactggaaa aagagttgaa gcaaaccaaa actcaagtgg atgagcaaaa acaaaaactt
      301 gaacaacact ttgagcaatc agcccaatta ctttcaagtc tagcttctga ttataaaaag
      361 ctttataccc atttagcaca aagctctgaa aagctattac cagaagcatc aaaaaatatt
      421 acctttttcc aacaaaccaa attacctatt ccggcagaaa aaacggaaga agatcaacct
      481 agagattatt ccgaaggttc atctggctta ctgaaatcat aaaactaaaa attgaatatt
      541 tagttttact aaaaggcact tagtttaagg attgattccg ttggaatcaa tcctttattc
      601 taaaccgcta cattaagcag ttaacaacat ttttcagctt tagatactga acttaggtta
      661 taagaagcct attttgtaag agttattccc actcaatggt tgccggtggt tttccgctca
      721 cgtcatacac cacacgggaa ataccgttca cttcgttaat aatgcggttg gagattttgc
      781 ctaatagatc atacggcaag tgcgcccagt gagcggtcat aaagtcgatg gtttccaccg
      841 cacgcaggct gacgacccag tcatatttgc gtccatcgcc cattacgccc accgatttca
      901 ccggcaagaa taccgtgaaa gcttggctga ctttgtagta ccagccggct ttgtgcagtt
      961 cttcgatgaa gatcgcatcg gctttacgca gtaaatcgca gtactctttt ttgatttcgc
     1021 ccagcacacg cacgcctaag cccgggccgg ggaacgggtg gcggttgagc atttcagctg
     1081 gtaagccgag tgccaagccg attttgcgca cttcgtcttt aaacaattca cgcaacggtt
     1141 cgactaagcc gagcttcata taatccggca agccgccaac gttatggtgt gatttaatca
     1201 cgtgggcttt gccggttttg ctggcggcgg attcaatcac atcagggtag atcgtgcctt
     1261 gtgcaagcca tttgaccgag ctaagttttt tgctttcgtc atcaaacacg tccacaaaca
     1321 ctttaccaat ggttttgcgt ttagcttccg gttcgtctaa gccttttaac gcttctaaga
     1381 aacggtcttc ggcattcact cgcacaatgt tcaaaccgaa tttgttgccg aacatttcca
     1441 tgacttgatc gccttcgttc aagcggagca agccgttatc cacaaatacg cagtgcaggt
     1501 ttttaccgat agcacgatgt aatagcaagg cggtgacgga ggaatccacc ccgcccgaca
     1561 aacctaaaat cacctcgtca tcgcccactt gctcacgaat gcgtttcacc gcatcttcaa
     1621 tgatgttttc tgccgtccag ttcgtttcac agccgcaaat gccgaccacg aagtttttca
     1681 gcaacgccaa gccttgtttg gtgtgggtca cttcggggtg gaactgcacg ccatagaaac
     1741 ggcggctttc gtccgacatc gcggcaatcg ggcaggttgg ggtaacgcct gtgatggtaa
     1801 agtgcggtgg taatttggtg actttgtcgc cgtgactcat ccacacgtcc aattttggct
     1861 cgcaagcggt caaatcatcg tttaaatttg caaaaagttg atcggcagat ttgagagcca
     1921 ccgaggcata gccaaattca cggtggtcgg acgtttcggt taaaccgccc aactgcatcg
     1981 ccattgtctg cattccgtag caaatgccca gcactggcag accagcgtta aacacatact
     2041 ccggcgctcg tgggctgttt tcctcagtgg tgctttcagg acctcctgaa agaataatcc
     2101 ccgttgggtt aaattcacgg atctgctctt ccgttacgtc ccaagcccaa agctcgcagt
     2161 aaaccccaat ctcccgcaca cggcgtgcga taagctgagt atattgtgaa ccgaagtcta
     2221 aaattaaaat tttgtggtgg tggatgtttg tcattgtaat ttcctttaaa ttatggcgtt
     2281 gtggtcatgt taataaaagt gccgcctacc ccatcgtttc tatatgtaat aataaaagat
     2341 tgcgttttat tacaacctgt tgcagtccaa agttcttttg cattaccttc acttggaata
     2401 ttgatgattt ttgtatgaat tttatcagga gtacatttat gtattgcttg aaaatacaga
     2461 tttatatttc tttctgtgtc caactttaat aaaggactgg ccgttgtttc tcctgaataa
     2521 gatggtccga aaatactgca cgcagataaa gcgacgattg aaattaaact taattttttc
     2581 attctattta tcctattaat attaaaatat ccactctcat ttctaggtta ctcaagccga
     2641 tagactgttc caagtacttg aagtagaaac attgacaaaa tttctataaa aatcgaccgt
     2701 ttattaactt ggagtattac atttttgaag aatcttcaaa atctctttca tatctttgcc
     2761 catataatcc gctaaacttt ggtcaatcag tattcgtttt tcttcgtaac caatcaccgt
     2821 taagcctgcg gttttggcgg cgagcattcc gtagtaggag tcttcaatcg ccactgcatt
     2881 ttgtggctca acgcctaatt tttcgcaggt gtagcggtaa atggttgggt ctggcttgct
     2941 gtgttcaaac tgttcaccgc tgacgattaa atcaaattcg tctttaatgc cgcaaaccgt
     3001 gagaatattt tcaatatgcg aaagggcgga agaagaggca accgcaagct taatttgatt
     3061 ctgcttggca aattgaataa tttgctgaat atcggctctg aaaatggttt taaaatccac
     3121 tttgctaaac agatcttgga aaaaggcgta gtaacgtgca cgaatttcct caatcggcaa
     3181 actggattcg cttagttttt tgataatcac cggaatttct tttaaacatt tgcctaccac
     3241 ttccgattgt tgttctaaag taatcgggcg gctgtgttct ttgatgtctt caataaactg
     3301 tttttgtaag gaaaattcca gatattcggt atccacaatc acgccgtcca tatcaaaaat
     3361 gatagcttgg agcatatagc ctcttttgta aaattttaag aaaatctaac cacttattcc
     3421 ctctctctgt tttaaattac tgaacgtaat ttaaaacggt ctctctccca caaggggaga
     3481 gagtgagaaa ggctattaac ccattcggta gttcggtgct tctttggtaa ttgtcacatc
     3541 gtggacgtgg ctttctttaa taccagcacc actaatgcgg acaaattctg ctttggtgcg
     3601 gagttcttca atagtggcac agccggttaa tcccatacag gagcgtaagc cgcccatttg
     3661 ttggtggata atttctttca agtagccttt gtaagcgata cgcccttcaa tcccttccgg
     3721 tacgagcttg tcggcggcat tatcagattg gaaatagcga tctgacgagc ctttactcat
     3781 tgcacctaat gatcccattc cacggtagga tttgaatgct ctgccttgat aaagctcaat
     3841 ttcacccggg gcttcttctg tgccggcaaa catcgaaccg accattacgc aacttgcacc
     3901 ggcggcaata gcttttgaaa tatcgcctga ataacgaatt ccaccatcag caatcacagg
     3961 aatgcctcgt tctttaagcg cagctgccgc ttctgcgatt gccgtgattt gtggcacgcc
     4021 aacgcctgtt acaattctgg tggtacaaat tgaacccggg ccgattccta ctttcacagc
     4081 actggctcct gcatcagcta acgcaatcgc tccttctgca gtggcaatat taccggcaac
     4141 aatcggtaaa tcagggtatt ttgcacgggt ttcacgcaca cgttgtaata caccttcaga
     4201 atgcccgtgc gaagagtcga ttaatagcac atcgacaccc gcttttacta aagcatcaat
     4261 tcgttcttca ttgcccggac cggctcccac tgccgccccc acacgcaaac gcccaaactc
     4321 atctttacag gcattcggtt tgctttccgc tttttggtag tcttttaggg taatcattcc
     4381 ttttaactga aattcattat tcactaccag cactttctcc actcggtgtt cgtgcattaa
     4441 gtggaaaatt tcttcacggc ttgcgttttc ttttaccgtc actaaacggt cttttggtgt
     4501 cataaattca cgcactgttt tgcttaaatc cgtgacaaat cgggtatcac gtccggtaat
     4561 aattcccact aaattttggt tttcatcaat caccggatag cctgcaaaac cgttcttttt
     4621 caccaattca gccaattccg ctaatgtcat atcaggagaa atcgtcactg gctcagaaac
     4681 aataccactt tcaaattttt tcactttacg cacacggtct gcctggcgtt caatcgacat
     4741 atttttatgg ataaaaccaa tgccgccttc ttgagcaagg gagatcgcaa gcttagtttc
     4801 tgtaacggta tccattgcag cagaaagcat cggaatgttt aaacgaatgg ttttagttaa
     4861 ttgagtagaa agatcagcag tattaggaag cacagtagaa tgtgccggga cgagaagaac
     4921 atcatcaaaa gtgagggctt cttgtttaat tcgtagcatt gcaattattc cttaaaaaat
     4981 gattaaattg aaaatctgta ctggaaaatt gcgagcggat tatacagagg aactaggttt
     5041 ctgtaaatag ggaaacgttt acgctatctg aaaatatact ttcaagcggt taaattttgt
     5101 gattttttag caaacaataa ataaaaaacg accgcttgta agccaacaaa aaagagcgta
     5161 tcgctacgct cttttgctat ttaaaactat gcttcttttg tcgttgggaa atatttttcc
     5221 tcgtcaaatt cacgtaatgg cttgtgttct tgccctaaga aagtgtagat aaccggcaag
     5281 ataaacagag taaacaatgt cccgattgcc aagcctgcta cgattaccat acccatactg
     5341 aagcgggcga ttgcaccggc acccaccgca aacagaagcg gaattaagcc tgcaatcatt
     5401 gctgccgttg tcatcataat tgggcgtaaa cgaatcgtgg ctgcgtggaa aatagcttca
     5461 tagcgtgatt tgccgtgcag taactgctct tctttcgcca cttcacacat caagataccg
     5521 tgtttagtaa ttaagccgac aagggtaatt agacctactt gtgaatagat atttaaggta
     5581 taacctgccg tccaaatacc gttggcgaat gccatcatat ctttcgagcc agtgcctgct
     5641 gcaatcccca taaacaagcc tttcattgcg gttggaatgt tcattaccaa caatgcacca
     5701 ctcacagcta acggcacaga aaccaaaatt actaatgggt cacgccaaga ttcaaattga
     5761 attgcaagta caagatagat aatgataact gctagagcga aagtcattgc catcgcatta
     5821 ccttcttgaa cgaactggcg agattcacca cggaagtcat attgataacc tgatggtaaa
     5881 gtgcgatcta attctgcttt cgcccaattt accgcatcgc cgattgagcc agatactacc
     5941 ccaccaatgg tggccgagtt taattggctc atacgaggta aagaagatgg tgatgttttt
     6001 aattccatcg tcacaaatga acctaacggg atagattgcc ctgttgcagt cgtgacatag
     6061 taattcatta aatcttcagg atttaaacga tcattacgca ccgcttgcga cacaatcggg
     6121 taagcacgag agtcaatatc gacacgagta ataatcgcac cggataagaa tgcccctaat
     6181 gtgccactca cctgctgcat tgtcacgcca taagcaccca ttttttcacg gtcgaatttc
     6241 atattcatcg tgaccgtatc aaatttcaaa tctaaattcg caaagaagaa ctgaccggaa
     6301 gtttgggctt ttttcaagaa ttcagaggca acgattgcca atttttcata gctatcagcg
     6361 gtagtaatca ctaatgagaa tggtagacca ttttcaccgg ttgaaatttc agggaatgca
     6421 attgcattca cgtccatacc caccactttt ttaccgattg cagccacatc attagaaatc
     6481 gcagcacgtt cacggctacg atcattccaa tcttttaatg caataatcga taatgcacta
     6541 tttgcaccat taaagcctga aactgtcatt aaggaagata cttcaggtaa tttagttact
     6601 tcctgattaa attgggctaa cgctgcttcg gtataatcta aattggtgtt tgaaggtcca
     6661 ttagaaatac caaccacaaa gccacggtct tctgtcggtg caacttcact ggaaagtgag
     6721 ccaaataaca tcggtaaact ggcgaagatc agcaccgcaa agaataagac gaaaccacga
     6781 acagccataa taccgcttag catattggta tagcagctgg tcattttatc tagtgatcta
     6841 tgcaccacgc gggcaaatgc tgactcttcc ccttctttat gttcttttaa tattcggcta
     6901 gacatcatcg gcgaaagggt taatgccgca atccccgaaa taaataccgc accggcaagc
     6961 gttaaagcga actctttaaa tagtgtccct gttaccccgg tcattaatgc cattggtgaa
     7021 tatactgcac ccagagtaat agtcattgaa ataaccggta aagcaatttc acgtgtaccg
     7081 ataatcgctg catcaaatgg cgttttacct tctttaacgt gacgttctac gttttcaagt
     7141 acgacaatcg catcgtccac taccaagccg atcgctaata ccaacgccag caaagtaagc
     7201 aagttgatcg agaaaccaaa catttgcagg aagaataata ccccgattaa ggaaatcgga
     7261 atggtaatca ccggtacaat cattgctcgt aatgaaccta agaacaggat aattactacc
     7321 aatacaatga cggttgcctc accaatagtt ttaattactt ctttgataga actatcaatc
     7381 gcaatggttt tatcgtaaac aatatctcct tgaatggtgc ttggtagatt ttttaatacc
     7441 tgctcaaaca tcggataaat atctttcgct acggttaaag agtttgccgt tgcggctacc
     7501 gaaacagcaa gcacaactgc atctttaccg ccaaccgttg ctcttgctgc atcttggtat
     7561 ttatccagct caacagtcgc aatatctttt aatttgatgg tttttccatc tttggtggtt
     7621 gaaaccgtaa cctcttctaa ctctgtcaca gaaggcgtgg tagaaagtac tttgtttcta
     7681 taaaccgtat agtaaccgtt agaattaccc gcagcggttt gcaagttatt ggcacttaat
     7741 gccgataata cagccgcccc tgataggtta ttgctcgcca ttttatccgg atcaagccag
     7801 atgcgtaagc caaaaacaga gccatacaca tcaacgctag aaacaccatt taccgtaaag
     7861 aactgtggtt ttactacacg gttaatataa tcggtaactt gtgatgtatt aagttcatca
     7921 gagacaaatc ggatatacat taacgcatca tttgaaccgg ttgagactct aattgacgga
     7981 tcatcaatac cgctcggtaa atttgagcgt accgcattca cttttgccga aatatcggaa
     8041 agtgcggcat tcggatcggt atttaacttc atttttgccg ttaccgtagt ggtacttgga
     8101 gagcttgatg aagtcatata gtcaatatta tccgcttgag caacagcctc ttctaactgt
     8161 gaggtaacca gtgtctgcat taaacgtgca tctgcacctg aatagttaac actcacggtt
     8221 acaatcgaga ccgtcatctc cggatattca cgcacctgca atttttcgat tgcttgcaag
     8281 cctaggatcg taatcaatag gctgatacaa actgccaaaa caggacgttt aataaagatg
     8341 tcagtaaatt tcacttaact cactccacta cagtttactg tttttcgccg gtgtggtaat
     8401 gcctacggct tctgtatcag aaactttaac caacgcatta ttacttaaac gttgtaaacc
     8461 gcctgttaca atcagatcac ctgctttcac gcctttggat aattgtgaat agtttccttt
     8521 gcggtcagcc gttttcactt ccatctgttt tgcacggtac attttgttta catctaaact
     8581 tgggttttgt accgccattt tgttcaccat ttctttatct tcatcagata atggttgcag
     8641 cacatatacc gtttcaccat acatagtgta agcgatagaa atttgtggta cgacgatttg
     8701 tccggtttct gttggtaaag caacatttaa gcgggcaaac atacctgaaa gcaatttttc
     8761 ctgcccttct tcaatcaccg cttccacatt aattaagccg gttaaacgat ccacagccgg
     8821 atcaatagcc acaattttag ctgggaaggt ttgtgccggt aacgcatcaa ttacggctgt
     8881 cactttttgc ccaatcgaga tttgctctaa attagtttgc ggcaaggtaa aacgtacttt
     8941 cattgaagat tgatcttcca cacgcacaat ttccgtaccc attgtaatgt attgcccaac
     9001 attcacattc acgatacccg ctaaaccact aaacggagca taaatttgac ggcgtttaat
     9061 cgtagcacgc aatgcctcga tattggctaa taattggttg taggtagatt gagcattatc
     9121 aaactcggct ttagaagcac tgtttgaggc aatcagatta cggtaacgct ctaaatttgc
     9181 tttggcattc ggtaattgcg cttcagaggc tctcaagtta gcaatttcaa cactgctgtc
     9241 aaattctact aacagatcac cttttttcac acgctgtcct gaagtgacca aaacacggct
     9301 aaccacgcct gaagtttcag cacttaacat tgccccttga tttgggcgaa tataaccgac
     9361 cgcagaaatg gttggtgtcc attcttgggt cgtcacttgc atagcagtaa cttcgctcac
     9421 cgcctccggc atatttgccg ctgcttcggc ttttttcatt gccccgattt tttgtaaccc
     9481 tacgattgca gcaaacacaa tcaatacgat taacaatgtg agtacaatta aaaactttct
     9541 gcctttaccc agcttctgtg tttccgttgt catacattct ccataaaact aataaaaaga
     9601 aacttaaaaa gtgattgctt tccaagtgcg taaaataatc tcgtctaaat atccatcaaa
     9661 ctgattttct tgattcagat tttgcagata ttggatatcc accaatgtgc cgatgcttaa
     9721 tccataaagc aactcattag atagatcagc aataatcctt tgctttttcc cttctaaaat
     9781 taatttattc caaaaggaag tttcatcagc tatggtttcc cgaatcaatt catcaatccc
     9841 tatcaccgct tgaaactgtt ttaccaaatc taaacgctcg attaaaaact gccatttttt
     9901 attgaccaac gctttatatt gctcaaataa cgccatttca ggcttaaact caaaatgcat
     9961 ataaccgtta taacattcga gtaattgggc agccaatgag tgcaataaat catctttggt
    10021 tttaaagtaa agatataatg taccggaagc gatccctgct tcttttgcaa tactacgcat
    10081 tgaaaggttt tgcaaacctt cttgcacaat cagcgactcg gttgccgata aaatacggtt
    10141 taccatctct tcttttggct cgcttcgcct agacatttta tctccttacc tataatgaac
    10201 agccgttcat tatagctttt tttatgaaaa aagaaagcag aaaacaccta tcaaattaaa
    10261 ataaaatagt tgcaaaattc ctcatttatt gaacaagcgg tcatttttgg ctaaaacttt
    10321 gcaaaaatca ctcaaacaat aacgcttaac gctactttat tattattttt gtgctactat
    10381 ttgtacctaa ttataggatc atctttattt caatatggca acgaaatcta aataccacac
    10441 caaacaattt gagcagctat tggctgacct catcgccacc atagaaaagc ataaagcacc
    10501 ggtggattta tcgttaatgg cattaggcaa tatgataact aacattttaa ttgaaaatat
    10561 tcaaagcccg gcacaaagag aagctctcgc tgatgccttt gccgatgcat taaaacaatc
    10621 actaaaaacc aaataagatg atgtttgcac gcctacgcag tttattgccg accaattctc
    10681 gccaatatcg agaagaaacc tcacagaaaa tcacgtgggg gcattggttt gcactattta
    10741 atattgtgtt ggcactactc atttcctctc gttacgcatt taatgcagac tggccgaaca
    10801 cgcttgtagg caaactttat ttctttgtca gcctgttcgg gcatttcagc tttgtggtct
    10861 ttgcaggatt tctattaatt ctgtttccgc tcagttttat tgttaagaat catcgcacct
    10921 atcgtgggct ttccgtgatt ttagccacca tcgggcaaac cgtgttattg gtggatactg
    10981 aagtcttcaa gcaattttat ctgcatttat caccgcttgt atgggatctg ttagttaatc
    11041 cggaagaagg ggaactgacc cgtaaatggc aactgctgtt tgtaccaatg ccactccttt
    11101 tgctggcaga aatgctctac tctcgctggt gctggcagaa actgcgtagt tttagccgcc
    11161 aaaaatgggg caaatatgtc gctctctttt tcgtgatcag ctttaccgct actcatttaa
    11221 tctatgcgtg ggcagatatg aatgcctacc gcccgattac cgctcaacga gcaaactacc
    11281 cactttctta cccgatgacg gctcgtaatt tcttagaaaa acacggtttt attgaccgag
    11341 tagaatttaa tcaagaaatt gaagaaagtg gcagactaga tactttctat ctgaattatc
    11401 caaaatctcc cttgattgcg accaaaacgc cctcaactaa tattttactg attaatttat
    11461 caggtttatc taaacagata ataaatgccg aaacaatgcc taagctgaca gaaatcagcc
    11521 aacaaagcca ccgctttatg cagcattaca gtagtggtga ttcagcctct gccggtgcat
    11581 taggtctatt ttacagttta agcggtaaat atttggattc cgttttagcc gataaaaccg
    11641 tgtcaccgct tatcgaaatc gctagaaaat cggactatca attagggctg ttttcacata
    11701 atggttttgc cgacccgatt tatcatcagg cgatcttctc tggtatttta ttgcctacgg
    11761 cgcacagtaa tgtaggggcg attgggcaat ggaaaaactg gatcagctct cgctcattgg
    11821 aaaatccgtt ctttagctat ttagacttaa gaatgccctt cgcccacacc gctcaagagc
    11881 aggcaaaatt attagattgg caattcgctg aaatctggca acatttgacc caaaatgcac
    11941 tattggcgaa tacgctggta atcattaccg ccgatattag taatgaagtt ggagcagaaa
    12001 atagcttcga taaacaacac attcaagtgc cgatgatgtt ctactggcaa ggcgaaagca
    12061 aagagtacca tttcctttca agccatttag atattatgcc aaccttactg agccaattct
    12121 tcggcgtgca aaatccgctg aatgattatg cacaaggtat ggatttaagc acccagaacc
    12181 aacgtttatg ggtatccagt tctaatcaca aatggaatgt ggcgattatg ccgaatggcg
    12241 atcaatatca aattgatcgt aaaggcaact ttaagcactt taacagcaat ggcgaacacg
    12301 agaaagatgc tcgaccacca ttagcgttgt tcttacaaat gattcaacaa agcaatcaat
    12361 ttattgaaaa gtaatgttca acaagcggtc atttttgcag gaaaatttgc aaaatttcag
    12421 caaaatatga ccgcttgtca ctatctgagc tgtctatatt tcaagctaac aaatacaaac
    12481 caaaccattg ctacaaaagc aatactccca ccggcaaatc cgatattggc taatcccagt
    12541 tgctgaatag cgatgctccc cagtaatgct ccaccgccaa tgcctaaatt ataagtgccg
    12601 gaaaaaattg cagttgcgac atcagtcgca tcaggggcaa gttcaagcac cttcatttgc
    12661 aacgcaatgc tcattccggt aatgccaatt ccccagacaa aagcgaccat aaacattgcc
    12721 actgttgagt cactcaaaaa cagtaaacaa agctggctgc acataataat ggcgatcccg
    12781 cttaagataa atttattcgg ggctttgcca tataaccgac caaataaaaa acttgccacc
    12841 acacctgcca agccaaaaac cagcaaaata aaggtggtgt tttccacact caccgaactg
    12901 attttaatca taaacggctc aatatagctg taagcggtaa aatgtcctga aacgatcaat
    12961 gccaccagca aataaatgcc gattaacatc gggcgtttaa ataacaaagg caaacttttt
    13021 atcgagcctg catttttgct tggtaaataa ggcagcaacc gccaaatcat cattagcaca
    13081 atcaaagcga taatcccaat aatgccaaag gttgcccgcc agcctaaggc ttgcccgatc
    13141 attcgcccat aaataacatc agcaacagcc gttttctttc catattcgcc gtgagtaaca
    13201 tcaacggtaa cgataataaa aataccaccc acgcataaac cgtcatcata atgcctgccg
    13261 atgaaggctc catttggaaa ctgcttgcaa tgtctgaaag caatgcaata ggaataaatt
    13321 cggtggtgtt tactataaaa gccgcaaagg caagactaaa tactctaagg aacgataatc
    13381 tccgttgagc ttttcgagca agtttcatat taattaaatc cgagaaaaac acatttattt
    13441 tcaaaatttt aaaaataaat gtaaaaacaa aatcaaattt ccaaatttct gaaaataaaa
    13501 agattgccaa tgtttccatc aacaatcttt ttatacatat ttagattaaa gtgctaagtt
    13561 ttatttagca aagcctttta aaccaacaac gtgaacatac tcttggttat tggtgatttt
    13621 acgcaccaat ttataagttg tgcctcgttc agggctaata ttttcagggg ctgcaattaa
    13681 taactgcata tccaaacgtt cgcagagttc aaatagcgta ttaattgagg tagcatctaa
    13741 tcgagccgct tcatctaaga acaataagcg agccggtaga atatctttgg cacgcatacg
    13801 gcgagcttct tcttcccagc tttgaactac cattaagaga atcgacatac ctgtaccgat
    13861 cgcctcaccg gtcgataatg cactactttc tgcacgcatc cagccgtctg caccacggaa
    13921 ggtttccact tctaaatcta agtagttacg gtaatccaat aactcttcac caatggtctg
    13981 tggtgtacgt tgccccatct caatatgagg gttcacccgt ttatacaaca tcgctaaggc
    14041 ttcggagaag ctcagttttt ggctgtcgaa taaatctttg tgttcctcac gattattgga
    14101 taacgcattg agtaaaatag cgtgcgtatc tcggatattc accaccaaac gcaccccttt
    14161 tacctgaccg aatgcaatat tttgtaaacc ttggttcagt tgcaaaatgc gttgttgttc
    14221 acgctgaatg gttttacgta aaatatttgc cacactttcc gcactgatcg ccagtttttt
    14281 ctcacgaccg gttaattcat tggttaagcg tgaaagctcg atttccatct gctcaatcgc
    14341 atcaatcgga tcatcggttt tgataatgtc ttggcgaatc cgctcacgca aatgctgata
    14401 aaccgcaata aagaacgcca ctttgttttc cggcttgcga ctatcttcag aagcccgcaa
    14461 gctatcacgc aggtattcat tatccgccac ggcggtgcgt aatgccccga gagctttatc
    14521 cgaaatcgaa cgtaattctt cagccgattg ataagccaat tcacggcgat ttaaacgttt
    14581 ttccacatcg ctgttacgag ataaacgttg cacaatacac cagctggctt ttgcctgcac
    14641 caccaattca cgttgtgtat gataatcacg ttcggcttta cgtaaggtgc ggttaaggtt
    14701 atccatttcc gcctcgatca ccgcaatttg tttatctaaa taacctttgc gggaacgttg
    14761 ctggcttaaa cgttgttgca attcatcacg gcggaatctg gctcgctctt ccgctccgct
    14821 atcaccacgc acgcccaaat cgtcaatttc acgaattaac tcttgtagca tttggttttt
    14881 cgcctcataa gaactgcgta agccggtcaa tacttggtta tattgtgaaa gttgagcttg
    14941 agcttgacgc agctgatcac gagcctgttc acgctcacgt tgtgcatttt ccaaacgttg
    15001 gcgtagctgt tcggttaatg cagagccttc tgtacccacc gtttcttgat agctaaaatg
    15061 gaggcggcga ttcattacat cagccaagct gaacactttt tgctgtaaca ctttttgctc
    15121 ggcaactgaa cggcggtaat cggcttccaa ctgttcaaat aaagccggat cactttttaa
    15181 tgcggctgca atcggctcaa gttggcttaa tgttgctcca aattggcgga taaacatttc
    15241 atcttcttct gccaattcta attgctcacg acattcctcc gctcgtgctt ccagcgtttc
    15301 atcggctaat aaattcgcaa gcggtagaat tttattcaac atttgcaact gggcttttac
    15361 gctttctaat tggtgacgta attgctgttc gttaccggct gattgtgcca attcacgttc
    15421 aatttctgcc cgttctgccg caatctcttg cattaacatt tcagggtttt cttggaacgc
    15481 taaatttaag tgcgtgccga taaattggct taagtgttga tgtaaacgct ggcatttctg
    15541 cacatcaaag gcacgttcag cgtgtttttc tgcggtttca tcacgctctg cttttaaagt
    15601 cgctaaatgt ttttcacgag cagcacgtcc gaataacggc acttcaggga atttagaata
    15661 acgccattgg cgatcggaga ctttcaccac cacgccttcg cctaattcct cggcactaaa
    15721 taccgcatcg tcaaaggcgg acggatcacc ttcaattaaa taaagatcac ttgggcaatc
    15781 gtctaatttc tctagctgtg ttttaaccgc ctctaaatca cgcactacaa tagcgtggcg
    15841 agcctcgccg tataaggcgg agaaataagg cgcatcttca attgatacat catcatataa
    15901 ctcagagagt aacactccac caaaacgttc tgccaactgg tttaagcggg cgtcttccga
    15961 gccgtccggc tggcttaagc gattaatttg ctcatcaagc atttgttctt tacgagccaa
    16021 ttcatcacga gcaagggtgg cttcacgctc tttgctcagc atattttgca taaactgcat
    16081 cactgattgg ctggcttcaa acttctcgcc acattgctct tctaaacgag tcagagccga
    16141 ttgtgccgta tgccaagccg gtgcattctt cgctaattgc tgatattgtt gattaagctg
    16201 ttcacgttgt tggcgttggg ttgaacgttg ttctacaaag tccgaaagct ctgcctctaa
    16261 atcttctagg cgagcttgct gctcttcaaa ataggcgtct aattcttccg ctgaattgag
    16321 ttgttgttgc gatttttggt taaattccgc cactaaacgc tgggcatttt gctgttgttg
    16381 caaacgctgt tctaaatcgt tgagtttttg acgtaaactc accgcttgct gagcttgcat
    16441 tttttgctca gggaaggcag aaagtaacgc acgagcctct tcccacgctt gcaagcggtc
    16501 aatttcaccg gaaattttgc aaaccaattc aaacgctttt tcaaattggg ttttcgccat
    16561 atccgacacg cttaaacgtt gttccagctc aaatacttga tcggtaagat cttcggcttg
    16621 agccacaaat tctgcgtggt aatcttcaat attatttaaa tctaaattca ctaagccggt
    16681 tagctgtttg gctttttcta acgcattcac cgcttgttgg tattgcaatg cacgagtttg
    16741 ctgtgcatct aaggcttgtt ggtaatccgc catttgagaa cgcaattctt caacgtgatc
    16801 atctgcctca tccgcacgag cctgagcatt ttcggcaatt tccgcaattt cttccaatgc
    16861 ctcttgctgt tcttccagct taatattcag ctcttcaact tcgtcttggt agcgttcgat
    16921 tttctcttgg tggcgtaacg cattcatcac taaatttaga tgatcgttcg cactattgta
    16981 atccgcctct aacgccagct ctgcttcggc aatatccgca ctttcacggc taaattccac
    17041 aaagcgttgc tgttcgagca aaattttgga ttttgccgca taccactctt tgcgttgctc
    17101 taaggcttgt tgtacattgc cacggcgttc attcgcatta cgcatataat ccgccgacac
    17161 ataattggtc gattcggtaa ttaagcgttt gaacatatcc cgatccgatt gcgtgacctt
    17221 aatcgcctct aaggtcatac ggttttcacg cagagcggat tccatatctt ggaacgcttg
    17281 gcgaacgccc gtattttccg gcaacaagta atcacgcaag gatttggtaa tcacacttga
    17341 aataccacca taaagcgagg cttcgattaa tttgtagaat ttgctacggt cggctgccga
    17401 acgaaggcgt tttgggatta cgcccaaatc gaacataaaa ctgtggtaat cagtaatcga
    17461 atggtactgt ttgaattgga cttcgctgtt ctcaaattga tctttgagtt catttaacgc
    17521 cagcactcga gccttattcc ccacttgttc ggtcagtagg ctgataatgc tttgctcttg
    17581 aggaatattc tggagcgaga acgaacgaat atcgactttt ttatcccgtc cgacaatttg
    17641 ttgcaaacgc acgccggtaa taatccgttg cccacgggaa ttgaatgact ctaacaccgc
    17701 atagcaaaca cccgctttta acttaccgta taagccttta tcacgagaac cggcggttga
    17761 gcctgcttca gtcgtattac ggaaattaag caaggttaaa tctgggatca aggcggtcac
    17821 aaaccctgcc attgtggtgg acttacctgc cccgttaccg cctgaaagcg tggtcactaa
    17881 gtcatctaaa tcaaaggttc gagcaaaaaa accgttccag ttaatcagcg ttaaagagag
    17941 aaatttaccg cgttgtacat cattcgggcg tgcaagcggt gcaatttgag gattattttg
    18001 caattctgtg gtatcaatca ttatgttttc tcactaattg tcctagcacg ctaaagcgta
    18061 ctaggttagg tataggtgag tagctccgct actctaatcg caacctcagc cttggagggc
    18121 tgctttatgc ttaacctagt tcggctttac cgtgtctagg gcagactcat taaatgctga
    18181 atctattcga atgaaatcac tcattttctc cgtcaaaggg ggcttcatct gcaatatttt
    18241 catctatttc aaccgcttgt tcgtttaaca acgcaggggt tgtcgcttca ccatcacgaa
    18301 ttaagcgaag ctgtgcctct cttgggtcat caccggtacg cacatcagcc ccaaaacgga
    18361 agaccgattc tgaaatcaca aattttttgc tgttttgctc gcctactcgg gtaataatgc
    18421 cgatacgggc taatctgcgt aacgctccgc cggctttttc tgccagcttg gcacggtcta
    18481 aatcggaacc ggtcgaacgt gggtttaccg cttttaataa tttgctttca tcggcaagac
    18541 tgagtaattc ttcatacaca tcatcttggc tgaaaatccc ctgctgagcc aaacgttccg
    18601 gacttaaata gaggtagcac aacaccttac ccactaacat ttccatttct gacattgccg
    18661 aacgggcaat tagtgtcgag gctttcgggc gtaggtagaa aaagccttcc ggtgctcgaa
    18721 tcaactcaac gtgataacgg cggtaaaaac tctctagttc cgcttgaaaa tccatcaaaa
    18781 agacgtgttg gtcaagctgc tcggtattga tatggcgacc ggctcgtaat tggctgtcta
    18841 gctccggaaa aatcgggttg gcaatcgcaa gtgccagttt cggggaaatg aaatcttgga
    18901 tattctctgt cattgtcatt ctcttcaatt ttgcaaaatt ctgggtaaaa acgaccgctt
    18961 gttatttatt gtattggtcg ataacattcg cctgcacttc cgccccttgc tcgttaatcg
    19021 gctgccattg tgggtaaacg gcttggctat cttggcttgc catacctaac ttaacagctt
    19081 gatcgacaat aatacgagcc acgtcaaaat ggcgggattc cgggaatcgg gcaagctgtt
    19141 cacgcaagat aacgcctaaa tctatcggtt taccttcagc acggaacggc gctaaatgag
    19201 cttgcattgc cgaaacaatt tgctcttgca catctgaaag cgactcatac tctaactcac
    19261 ttggcaactc gcccaccgat tctgcctcat ttaacattgc ttcatcatca cgcaagtcca
    19321 gtaacgaatc ggcttttgca gtataaagca accaagggct gttgtaataa tcttgaatcg
    19381 attggcgtaa ccgttgcccg aatacacggt ttttgtccat atcaatcgct gtacgaataa
    19441 atttatgcac atggcggtca tagccgatcc aaagatcgat agcttgttgt ccccagctga
    19501 taatacggtc taacttattt tgtagattca caatcagctg atcgataaaa tccaaatcat
    19561 tacgagccat caggcaactt tgaatccgca ataattgagc ttgcagttta tcaccagcgg
    19621 catttaaggt atcttgcaac tcacgcaaat tccccgaggt ttcgtctaac aattgctcac
    19681 aactcataat tgcttcgtgc cagttttggc taagcagttc ggctattcgt tcacggattt
    19741 ggtgctgatt ttcgtccata atccgttgtg aaagatcgat gctgtcaaag atttccgcca
    19801 ccgaatattt caatggggca aacacattat ttcgccaaaa acgttcatct tgtgcctgct
    19861 ctattccctc ttccgctgct actgaagctc gctgaatttc atctgccaca atcgaaagtt
    19921 gaatcgataa acgcagggta gaaaattccc gctggcgaac gtaataattt gaaattccca
    19981 cccctaacgg cgtaacacga taaatcgcca aaccttccgt aaattcgcta ctaaaacggt
    20041 ttaacaaccg ttgtctgact aaatcattaa tcgcattatt ggcacgctgg gtaaaagtgg
    20101 catcagattg ctcaaacgaa tttgaaacat aacggaaaag atcaataaga tcactttcta
    20161 acaattcacc atctgtctgt tcttggttat aaatagagat agcaagtaga aacgctaagc
    20221 ggtcggaaga aagcgaaagt gaaaattcac gatctttcgt ccaagagatg agttctggaa
    20281 tagtctgtgc caattcgttc tgcatacggg cttaatcttt aatttctata caaaaatggt
    20341 atttattgta actgaatgta atcaaaatgg gaatggataa aacgcagaca agagaaatga
    20401 acaatataag cggtcaaata tgggtgattt tttgcaaaaa gtattttaaa ggtaaatgaa
    20461 tccgaaaatt tattatcact acgctaattt atgataccat aaatagaaaa gactggatcc
    20521 aatagaatat cagacacagc cccttagatc atagtctaaa ctctaaggct tagagtgatt
    20581 tagctaactc tttaataaat gctttaaatt cttttccgca tttgtcatga tttaaactat
    20641 attctacaaa tgctttcata tagccgactt tataaccaca atcaaatgag cgccctgtca
    20701 tatgaaaagc ttcaaccgtt tcttggtgaa tcaacatatc aattgcatcc gtcagctgga
    20761 tttcatcacc tacgcctact ggcgtttttt ctaataaatt ccaaatattt gaggaaaata
    20821 cataacgtcc tactaccgct aaattagaag gcgcctcttc aatacttggt ttttcaacca
    20881 ttttcgcaat aggcgctgcc cccccgagag ggatatctac accatggcag tcagcaaccc
    20941 catagctact tacattttcc attggaaccg gcgcaaccat aatttggcta tatccggttt
    21001 cttggaaacg cttcaccatc gcagctaaat tttccgtttt ttggtttgct gtaaattcac
    21061 caagtaatac atctggtaat acaaccgcaa acggttcatc gccaaccact gttcgtccac
    21121 atagaaccgc atgacctaaa cctttggctt gcccttggcg aacgtgaatt aaggtaacat
    21181 cttttggtac aatagaacgt acatcatcta ataattgacg ttttactcgt ttctccagca
    21241 tcgtttccaa ttcaaaagag gtatcaaaat ggttttcgat agcattcttt gaagagtgag
    21301 taaccaatac aatttcttta aaacctgcag ccacacattc atttacaatg tattgaataa
    21361 gaggtttatc tgcaaggata agcatttctt ttggaatagc tttggttgcg ggtaacatgc
    21421 gcgttcccaa tccagcaaca ggaataatga ctttcatttg gaatcctttg atgacttaac
    21481 atattagata taactgaaat aaaccgctta gacataacag gcggtcaatt ttcagaaaat
    21541 tttgcattgc ctgcttcgct gttatcatct agcagcttta cagttaaaat gcttattccg
    21601 cattttcctc ttctactgag gcttttattc tttcataaat ctctcggcgg tgtacagaga
    21661 tttcttttgg tgcattcaca cctaatttaa cttgatttcc tcggatgctg agtaccgtaa
    21721 tctcaacatc atctcctacg agtaaaactt ccccaatctt acgagttaga ataagcataa
    21781 ttgtctccta aaaagtgaaa aactctataa atacttaaat atagagtaaa gttttaaagg
    21841 cgagttcagc tcgccttgtt attattttta aagttttgct gtaatccatt cttgagcaag
    21901 tgacaatgct tgcaataaat gttgtggttc tgagcctccg gccattgcca tatcaggacg
    21961 tccgccccct ttacctccca ctttttcagc cattgcacca actaattgac cagcattgac
    22021 tttatcggtt aaatctttgg tcacacctac aatcaaattg actttatctt ccgccgtagt
    22081 cgcaaataca acaactgcac tgcctaattg attttttagg tcatcaacca tcgttctcaa
    22141 tgcttttggt tcaacattct ctaattgttg aatcactaca ttcacgccat tgatttgggt
    22201 agcttgtttg gctaaatctg aacctgcttg tgctgcaagt ttatctttta gctgttgaag
    22261 ctctttttct gtacgtttag ccttctcttg taattgaaca attttctcaa cgaatgaatg
    22321 actgtctgct tttaacaatt cagcactttg ttgaacggct tgttgtaagg tatgcaacca
    22381 agcaatcgca ttttcaccag tgacagcctc tatacggcgt acacctgctg ctaccgcacc
    22441 ttcagaggta attttgaata agccaatatc accggtttgt ttaacgtgtg tgccgccaca
    22501 aagttcaatc gagaaatctg acatttccac tacacgcact acttcgccat atttttcacc
    22561 aaataacgcc attgcacctt tcgcttttgc agattcaata tccatttctt caatgattac
    22621 ctgaatattt tcacgcactt tagcattcac gatacgttca acttcttcaa gttgtgattt
    22681 agtaattgct tccggctgag aaatatcaaa acgtaaaata ttttctgaca ctaatgagcc
    22741 tttttgagca acgtggtcgc ctagcacttg gcgtaacgca gaatgcagta agtgggtagc
    22801 actgtggttt aatgtaatag catgacgacg ctctctatct acgatcgtat taactttgtc
    22861 gccaacagaa agtgagccgg aagttaattg cccaatatgc ccgaatactt gaccatattt
    22921 ttgcgtatct actacctcaa aattgcaaat ttctgcggaa atttgaccgc tatctcccac
    22981 ttgtccgccc atttctgcat agaatggggt tttatctaaa atcactaccg cattttcacc
    23041 cgattgaata gactcaaccg attttccatt actaaataac ccaattacag tagcatcatt
    23101 taagctggtt tcagtatatc cactaaagca tgttttactg tccactttaa tcacattgtt
    23161 ataatctgtg ccaaagctac tgctggcttt cgcacgctca cgttgtgcgg tcatttctgc
    23221 attgaagccg tcttcgtcaa ttttaatatc acgttcacgg caaacatctg cggttaaatc
    23281 taacgggaag ccataagtat cataaagttt gaacgcaact tcgccagata aggtgttatt
    23341 ttcaaccttc gctaatgctt cttctaataa attcaatcca cgctcaagag tacgggcaaa
    23401 ttgctcttct tctgctttga gtgtcttttg aatatgcgct tgtttttggg tcagcacctc
    23461 accagcttgc cccattaccg ttgcaagtgt tggcaccaat ttatagaaaa aggcttcttt
    23521 tgcacccaaa atattaccgt gacgaaccgc ccggcggata atacggcgta atacatagcc
    23581 tcttccttca tttgaaggta aaacaccatc ggcaatcaga taggaacaag cacgaatatg
    23641 gtctgccact acacgtaaag atttattatc taaatctttc acattaagca aagtagcgac
    23701 ttctttaatt aaagtttgga aaatatccgt ttcgtagttg gagtttacgt gttgcattac
    23761 cgcagtcata cgttctaacc ccatccctgt atctacagaa ggcttaggca gtttttccat
    23821 cgtaccgtct gctaaacgat tgaactgcat aaatacaata ttccatacct caatatagcg
    23881 gtcgccatct tcttctgggc tacccggtaa gccaccccaa tgttcaggcc cgtgatcata
    23941 gaaaatctcg gtacaagggc cacaagggcc ggtatcgccc atcgcccaga agttatctga
    24001 agcataaggt gcgcctttat tatcgccaat gcgaataata tgttccgatg gtacacctac
    24061 ttctttatgc caaatatcgt aggcttcatc atcagtttca tacacagtta catataattt
    24121 ttcttttggt aagccaagcc attgtggaga agttaaaaac tcccaaccga atttgattgc
    24181 atcttgcttg aagtaatcac caaagctgaa attccccatc atttcaaaaa aagtatgatg
    24241 gcgagcggta taacctacgt tttctaaatc attgtgttta ccacctgcac gtacacaacg
    24301 ttgtgccgta gtcgctctgc tataagggcg tttttctaac ccaagaaaaa catctttgaa
    24361 ttggttcatg cccgcattgg taaataataa tgtcggatca ttctcgggaa caagagagct
    24421 gcttggaaca atcgtatgtc ctttagtttg gaaaaactct agaaaagatt gtctgatatc
    24481 tgaagttgtt ttcattaaaa atcactcttt ttgtaaatag aagttaaaca tttagttatc
    24541 ttgctatttt acacattttt tatgctattg ggggagctat atgctactta ttttttcaat
    24601 taaataattt ttgtaaattt tcccaaaaaa ataaccgctt gtaagacaga taaactgtct
    24661 caagcggtta tttttcattc actttcttgc tattcatctg ctaatggcac aaccagcata
    24721 tcaacagtga tattattcat gactcgacga gttgaagaca taaatttact ccagaagtcc
    24781 tgatgatggc cagtgatgag taaatcgaca ttgtgttttt ctacggcctc ttccaaaact
    24841 tgactaaaat ctcccgttcc gtttaaacat tcagatacag gataatttac ttttgaggca
    24901 agttcagcca gtgccgtatt tgtttcttca acaacactgt attgtaccga agacatatta
    24961 atatcaatta atcctgtata gagatccgaa aaattaacat caacgtgaat gagggaaagt
    25021 ttagctccgc atttttctgc taacgcagcc cccttacgca ctaaaacaag actttcttca
    25081 gaaagatcca ctgcaactaa gatatgttta tacataatat gctccttgct tgtgagagtt
    25141 gtttactttg tgtataaaca tactaacaca ctctttttga taaaaacttg aagta
//
LOCUS       DANMGB010000013        23990 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.013, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000013 DANMGB010000000
VERSION     DANMGB010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23990
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.013"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(339..986)
                     /gene="rnt"
                     /locus_tag="PXG19_000423"
     CDS             complement(339..986)
                     /gene="rnt"
                     /locus_tag="PXG19_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL6065755.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            complement(1071..1478)
                     /gene="gloA"
                     /locus_tag="PXG19_000424"
     CDS             complement(1071..1478)
                     /gene="gloA"
                     /locus_tag="PXG19_000424"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL6065756.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            1568..2383
                     /locus_tag="PXG19_000425"
     CDS             1568..2383
                     /locus_tag="PXG19_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065757.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            2387..3133
                     /locus_tag="PXG19_000426"
     CDS             2387..3133
                     /locus_tag="PXG19_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065758.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            3319..5094
                     /locus_tag="PXG19_000427"
     CDS             3319..5094
                     /locus_tag="PXG19_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL6065759.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            5112..5306
                     /locus_tag="PXG19_000428"
     CDS             5112..5306
                     /locus_tag="PXG19_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL6065760.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(5303..5776)
                     /gene="folK"
                     /locus_tag="PXG19_000429"
     CDS             complement(5303..5776)
                     /gene="folK"
                     /locus_tag="PXG19_000429"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL6065761.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(5979..7310)
                     /gene="pcnB"
                     /locus_tag="PXG19_000430"
     CDS             complement(5979..7310)
                     /gene="pcnB"
                     /locus_tag="PXG19_000430"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL6065762.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
     gene            complement(7555..8001)
                     /gene="dksA"
                     /locus_tag="PXG19_000431"
     CDS             complement(7555..8001)
                     /gene="dksA"
                     /locus_tag="PXG19_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL6065763.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(8251..9204)
                     /gene="thiB"
                     /locus_tag="PXG19_000432"
     CDS             complement(8251..9204)
                     /gene="thiB"
                     /locus_tag="PXG19_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL6065764.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(9248..9391)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            9675..10661
                     /locus_tag="PXG19_000433"
     CDS             9675..10661
                     /locus_tag="PXG19_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL6065765.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(10715..11134)
                     /locus_tag="PXG19_000434"
     CDS             complement(10715..11134)
                     /locus_tag="PXG19_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL6065766.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(11212..11967)
                     /gene="kdsB"
                     /locus_tag="PXG19_000435"
     CDS             complement(11212..11967)
                     /gene="kdsB"
                     /locus_tag="PXG19_000435"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL6065767.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(11977..12930)
                     /gene="trxB"
                     /locus_tag="PXG19_000436"
     CDS             complement(11977..12930)
                     /gene="trxB"
                     /locus_tag="PXG19_000436"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL6065768.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            13097..14167
                     /gene="dhaK"
                     /locus_tag="PXG19_000437"
     CDS             13097..14167
                     /gene="dhaK"
                     /locus_tag="PXG19_000437"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL6065769.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            14188..14814
                     /gene="dhaL"
                     /locus_tag="PXG19_000438"
     CDS             14188..14814
                     /gene="dhaL"
                     /locus_tag="PXG19_000438"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL6065770.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            14824..15231
                     /gene="dhaM"
                     /locus_tag="PXG19_000439"
     CDS             14824..15231
                     /gene="dhaM"
                     /locus_tag="PXG19_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL6065771.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(15271..16116)
                     /locus_tag="PXG19_000440"
     CDS             complement(15271..16116)
                     /locus_tag="PXG19_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL6065772.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(16160..16486)
                     /gene="glpE"
                     /locus_tag="PXG19_000441"
     CDS             complement(16160..16486)
                     /gene="glpE"
                     /locus_tag="PXG19_000441"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL6065773.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            16637..17095
                     /gene="exbB"
                     /locus_tag="PXG19_000442"
     CDS             16637..17095
                     /gene="exbB"
                     /locus_tag="PXG19_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL6065774.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            17132..17569
                     /gene="exbD"
                     /locus_tag="PXG19_000443"
     CDS             17132..17569
                     /gene="exbD"
                     /locus_tag="PXG19_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL6065775.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            17585..18496
                     /locus_tag="PXG19_000444"
     CDS             17585..18496
                     /locus_tag="PXG19_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL6065776.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(18565..19446)
                     /gene="cysZ"
                     /locus_tag="PXG19_000445"
     CDS             complement(18565..19446)
                     /gene="cysZ"
                     /locus_tag="PXG19_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL6065777.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            19558..20460
                     /gene="zipA"
                     /locus_tag="PXG19_000446"
     CDS             19558..20460
                     /gene="zipA"
                     /locus_tag="PXG19_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL6065778.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            20525..22582
                     /gene="ligA"
                     /locus_tag="PXG19_000447"
     CDS             20525..22582
                     /gene="ligA"
                     /locus_tag="PXG19_000447"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL6065779.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(22645..23913)
                     /locus_tag="PXG19_000448"
     CDS             complement(22645..23913)
                     /locus_tag="PXG19_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6065780.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         7269 a         5213 c         4739 g         6769 t
ORIGIN      
        1 caggatcatg ttaatcattt caaggtggaa acgcttgttt ttagattaga taaaaaataa
       61 ggagggtcga aatagcgggt atacagaaag tgcttatagc caaaaaatag tctattgtta
      121 ttgaatacaa gcggtctatt ttgtcacatt tttgccaaat ttggttaaaa aaccaaccgc
      181 ttgtaatctt aactgaagat agatagtttt ttattttttc tacaactcta cagggctgga
      241 tttattgcag aatggtactt gccactaact atcatcactc ccaggataat ttatagaaac
      301 aatacgagaa attgtgttaa taaatgaaat gaataacgtt aatccgataa tggtgggaaa
      361 ccacctaaat cttttaaacg attgaccatt gcacagaaaa gttctgccgt gcgctcggta
      421 tcatacaacg cagaatgcgc ttgcttaccg tcaaacggga tttttgccac ctggcaggct
      481 tttaccaaca cggtttgccc atacataaaa ccggcaaggg tggcggtgtc aaacatcgcg
      541 aaagggtgaa agggatctcg cttggcatta attcgtttaa tcgcagcctg taaaaagccc
      601 tgatcgaacg ctgcattgtg ggcaacaatc accgcccgtt ggcagccttg ctccttcatt
      661 gctttgcgaa ccattttgaa catttccgga atcgcaatat tctccgcaac cgctcctctt
      721 agagggttgt caatatcaat gccgttgaat tttaatgact cagggttaat attcgcccct
      781 tcaaatggcg caatatgaaa atggcattgt tgatccggca ctagataacc ttgctcgtcc
      841 atttttaaag taattgccgc caattccaat aaggcatcag tttgggcatt taagcctgct
      901 gtttccacat caatcacaac cggtaaatag ccacgaaaac gatgctttaa taatttataa
      961 tctatttgtt ccgttgtctg ttccatttat ctatcaacct aaaatacaag cggtctgatt
     1021 tgcaaaattt tttacaaatc cgaccgcttg aatattcata ttcgcaaaaa ttagtttcct
     1081 aacgctgctt tcgcatcttt attctcaata aattcgattt tataaccgtc cggatcttca
     1141 gcaaaggcaa tcacagttgt tccacccaat accgggcccg gctcacgggt aattttaccg
     1201 cctgccgcac gcacatcttc aatggttttg taaatatcat ctacgcctaa cgcaatatgg
     1261 ccataagccg tgcctagctc atatttatcc acaccccagt tataagtcag ctcaatcacc
     1321 gcactttcgc tttcatcggc atagcctaaa aatgctaacg aatacttata ctgctcgttc
     1381 tcgcttctac gtaacagacg catacctaac acatcggtat aaaacttaat tgagcgctct
     1441 aaatctccaa ctcgtaacat tgtatgtaaa attcgcatat tttcttcccc ctgaagttaa
     1501 aaaacgaccc ctattatggc ataatcttgg cttaaaatca ttttctttat accttttggg
     1561 attatctatg gctcacgatc acgattcgcc gtcaaaactt gaaatttcaa cccacgctgc
     1621 actgccaatg gtattaatgc tgtttattga aatggctctt aacttctact ctgcaccgaa
     1681 aaattcaatt tttatttctc cttacttatt ggcgtttttc gtgacctcat taatcagttt
     1741 tttagtgcta tggaaaggcg aaatctgccg agggcaagcc agccgtttaa gctttatttt
     1801 acccttttta cttattttcg ccgtagggaa tttcctttat tccataggct ttacgccaaa
     1861 gcataaccca atggcggtgg caagcattgc tgcagttttt gcctgcttaa tctacttccg
     1921 cctgccggaa gatcaaacct tatataacac attgatgtat tgtggtttgg ctatatcaag
     1981 tattggtatt atccaatatt tagccattta ttggtttgaa ctgccttcat tgtttaacgg
     2041 gattcgagcc aacaatttcg cccaagtgct gttaggcatt ttattagccg gctggtattt
     2101 aatgttagcg aaaagccgtt tagatgtttt cctcaaactg ttggtgaaaa ccgcccttgt
     2161 ggtgctgatt ctcaattatt gctggacagc ttttgtgctt tatcaacatc tacaaattat
     2221 gccggatatg ccattgcttt catttatcat ctattttgca gcacaatttg tgattttatt
     2281 gatgttggcg tggttattac ttggaaaaaa catcaaaaat ccgaccgctt ggacagttgc
     2341 tacgctgtta gcgattttat accctttcgc taatgtagtc tgatttatga aacgggcatt
     2401 aaaatttttc ggcattgcaa ccgttctatc tgttgtggca atctactatt ttttaatgcc
     2461 cagccactat cttgccacgc cgattaactg gattttgccg aaagcgtgga aagttcaact
     2521 cccacaaggc ttaaacctga attggcaagg ctcatcactt gctcaatttc aactctctta
     2581 tcgagattgc ccgctactaa gtgccgataa aaccgatttg ggttggattg agaaaaacca
     2641 tctttctgtc gataaattgg atattgatta ccgctgcctt gccttgtttc cacaaaatga
     2701 acacagcaat tccgacactt cactcaacgc attgctggcg gtcattcctg atggcgaagc
     2761 gactatccac gcccttaact ggaaaaattt gcctaccgat ttcaacccaa gacttcagcg
     2821 gctttttgag caaacagcta ttaaactctc actttcaaaa ggtgaaattc aggcaactgc
     2881 cgctcaacaa gcggtcaaat ttgcagcaaa ttttgcaaat gggcggttga atgccgattt
     2941 atcatatcaa ccgaatgaaa aagaacagca taatcttagg atttcagcag aaattgagga
     3001 caattttacc caactgccgc ccactatttc cgctgaatat gattggcaat tatcttatga
     3061 aatcatcgcc aataaagcct tgcaaaaggg cgctctattc tcagttggca aaaaaatgcc
     3121 gcacaaaagt tagaaggcaa ctggcaggtt gaacttgccg aaagtgaaaa taacaaactg
     3181 gatttccctt ttctgtttga tggggaaagc ctagaaattc aacaagggcg gtttgattgg
     3241 cactttaccc aacaatttcc actgcaaggg tttgttagca ccaagctcac accgaaatca
     3301 ttcaaccaaa acggcttttt gccactcaaa acggcgattc gtatcagcct gctttcccaa
     3361 aacagttggg gtaaaggcaa tattgtaatc tccaattcag acggagaaat aaccgaaaaa
     3421 gggctgaatt taccgcttcg tttgacgggt aatatcaaac acggcaattt tattctttac
     3481 agtagcgtgc cactggattt tcaaggtaat tttgacgatt taagcgtaaa atttttgcct
     3541 agctccctac ttcgtttgac cggaaaagag cggtatttaa ccattgaaga tttacgtttt
     3601 ccacttgccg gaattaaaat tgacaagcac ggtattcacg gacgactgca cgcaatttta
     3661 agagggcaaa gccctgattt taacaatatc gagttccatt tagacggaca agcacaaaat
     3721 tttaaggctg gagccttaga ttttttccaa gatcctaaag atgctaacgc agtaaaagac
     3781 agttggaaat ggcgaatttg gggagcatct atcctcaaag ccttcaacag taaagtgaat
     3841 ttaagcggca gagggcaatg gcataaacag cttgtgcggt tggaagaact caaaggcgat
     3901 ttagccaccg taaagttagc agatacaacc atttctaaaa tcacgcttaa caatacgcaa
     3961 gctattcgat ttaatgtcaa aaaattcacc cttgacggag cggtaatgtt gcaatcacct
     4021 gagattgcct tcagttatgg cggtgtgcta cccaaaccac gagtgaatct cgcctttgat
     4081 ggtgaagtcg aaaaactacg ttttaaagga gcggtgaata ccaccgaact cggcccactc
     4141 aaactgttcg cccgccgcca attaagccaa gatgccagcc aaattatcgg caaactttat
     4201 tggccggagc aatctgctca aggcttccag ccgctttttc cgtttcgtag ccaatgggtg
     4261 atcaacaacg gtacaattcg gggcgaaacg gcgtttagtg ccggcagtaa aaacgggctg
     4321 attgccggtg ggcatttagc cattcgtaac ggcggtttat ctttacctaa tggcgaagca
     4381 aaagggattg aattttcgct tccctaccgc taccaaaacg gacgctttca tttcggagcc
     4441 aaaaaaccgc ttgatgtaaa aattgcccaa atcaaactgg gggatttagc attagataac
     4501 gcttcaatga aactcaacgg ttactaccct tataccaaag ctaagccatt gaatttaaat
     4561 caattatcct ttgatttgtt tggcggtaaa ctgaatgtaa aacgctttgc cttaccacaa
     4621 accgaactgg cttacctgaa tttagagcgg attgactttg agcaaatttt gcaatttatg
     4681 caatatcagc aaattgatct caaaggcaaa gccaacgcta tcttgccgtt ttggttaagc
     4741 ggaaaacctt gctatatttg cgatggctta ctgacacagg cggaaacttc ctatttaacc
     4801 tttacccctg aattgttgtc agaaatgcag aaaagtggtt acaccgagca aattttgtta
     4861 catttagtag ataaaagcac gattaacgat tttcgcagtc tgattaatgt cgggccgaaa
     4921 ggcgatttag tattagacgg aaaattaaaa ttatcttcca atcaaaataa atcaaaagtg
     4981 aatttaaact ataatcaccg agaaaatctg tttgatttgt ggcacttaat taactatggc
     5041 tcacaatttg aacaaaaatt agaaaattac ctctatcaaa aactggaacg atgataaaga
     5101 atggaataaa tatgaaaccg gccacatttt attttgcaat atttttactg aatttgaccg
     5161 cttgtacgcc gaaagtacag cttgaaacgc caagtgaagg cattacgatt aatatgaatg
     5221 tggtcgttga tcaccgcatt gatgtgaaga tggacgagaa atcccgagcg gtgatcacca
     5281 aaagtgagaa caaaacgaaa aattagctga agataatcat ttgatgatct ttaaattgtg
     5341 cataaatatc ggctaatttt tcccctgtcg gtagtactaa atcaggcgtt aaatcaaaca
     5401 tcggcacaat cacaaattcc cgatttttca tctcgatatg cggcacgttc aaacgctcgg
     5461 tttgaatttg ctgattgccg tacaaaataa tatccagatc taaagttctc tccccccaac
     5521 ggcgtacacg cactcttccc tgctcatttt caatgctttg caatttatcc agcaatgcag
     5581 tgggcgatag gtcggtacta aattttgcta ccgcattgac ataatcaggc tgatcttgcg
     5641 gtccgacagg ctttgagccg tagaacgggc tgatttcaaa ctcatttgca aattttttta
     5701 atttttcgac cgcttgttta agctgctcaa gcggattctc aaggtttgat cctaaggcga
     5761 tatagacggt ttgcataaaa tatacttaca aatataacaa taaactctct ccccttgtgg
     5821 gagagagacc gcttatgagc gttcagcgaa ataagcagag agaggggaca agcggtaact
     5881 tttattaaat tttttacaca tttcccctct ccctgatttt tcttctgaac gaagaaaaat
     5941 cgctccctct cccacaaggg gagagggaaa tatattaatt atccatttac tttcggtttt
     6001 ttcttaaagg ttctacggcg gcgtgttttc tttttctcgc taggcacatt gcctaaatga
     6061 cgaaccgatt tcagcaattc agtacgctga ccttcattgc taaattggta ttcgtgccac
     6121 caagcggaaa gttcgaccaa atcgccgcct tcaatttctg cacgcatcac taataaatca
     6181 aaccctgcac ggaatttgac gtgttcaagg gtttgttgcg gtcggttgcc acttcgtttc
     6241 atcatctgaa attgcaatgc ccaaatatct cgaatgactg aagtgtgtct gcggtgcaac
     6301 gcaatcgcgt tgcaactttc cgccagcaca tcatttgctg ccagcatcat tgcatcgtag
     6361 ctgttgaagc caccttcgtt tttaagctgc tccattttct cccggagcgg ataccaaagt
     6421 agtgcagcaa ataaaaacgc aggatttacc ggtaatttat cggcaattcg ctcatcagtt
     6481 gaatttaacg ctttggtaat cattctttcg gcataggaat cacctttggc agtaaaaaat
     6541 gccggcaata ccggaaacaa gaattgccat agttcatatt cacgcaaaag ctgataagtt
     6601 ttcagccctg caccggtttg taataatttg agtgattcgt caaacaaacg ggctgccgga
     6661 atgttggtta acaacaccgc catatcccga attggggagg ccgtggcttt atccaagaac
     6721 atatccaact tcgccataaa acgaacggct cgcaacattc tcaccggatc ttcttggtaa
     6781 cgaatagtag gctctccgat aagcgaaagt ttacctgctc gtaagtcttc aataccgttg
     6841 aagaaatcaa aaataagatt gcgttttata tcgtaatata aggcgtttac ggtgaaatca
     6901 cggcgctctg catcttcacg gagcgtgccg taaacattat cacgcagtag cattccttca
     6961 tcgctgactt tagaaatttt gtcattgcga tgagattcgt gtcctgcacg gaaagtcgcc
     7021 acttcaaaaa tttcacgccc gtaaacaatg tgtgccaaac ggaaacgacg tccgattaat
     7081 cggcattgcc taccaaaaat acgctgaatt tcttcaggtc tcgcattagt cgcaatatcg
     7141 aaatctttag gctttttctc caagagtaga tctcgaatac agccacccac aatataagct
     7201 tcataaccgg caatctgcaa tttatcgaca atcgaaatcg catttttagg aaaatccttc
     7261 gggctaattc tatattggct ggcattcacc gcaaatttct tgtgtaacaa atgggaggga
     7321 ggattatctt gttgtttctt cccacctcta taagtctttt ggtccgttaa gttcggggct
     7381 gggcgtttag aacgggaagt tttgggttct ctttccgctc ttttttcact ctctaccttt
     7441 tcatttttct gagccgactt tttaggcttg gaaaataatg atttaatata attaaaaata
     7501 atacacctct aaatagtaaa tgcctcttaa aaaagaggca ccctgtaaag ttgattataa
     7561 gcctagctgc ttttctcgaa tttcagctaa agttttacag tcaatacata aatcagctgt
     7621 tgggcgtgct tctaaacgtt taatcccaat ttctacgcca caggtttcgc aataaccata
     7681 ttcatcttct tggattttat acaaggtttg ctcaattttt ttcaataatt tgcgttcacg
     7741 atcacggtta cgaagctcta aactgaactc ttcttcttga ctggctcggt cgttcggatc
     7801 ggcaaagtta gtcatatctt cttgaagctg gcttttggta cgctccgctt cttccataat
     7861 ttgactgtgc cacgctttca gaattttggt gaaatgctca cgttgagctt cattcatata
     7921 ttcttcgtct tttttaagct cataaggctc aacgcctgct aatgctaata aaccgagtga
     7981 ggttttagcc gcttgagtca tagatattta ctccttgttc cctgtttatt ggaagtttta
     8041 ttgttaaaat tattgcccga atacagacta acttccttgt aaccgcacta tacgaaaaaa
     8101 tcaacatctt cgggttttaa ataatggcgg ctataaataa cacaaaaacg actcattaat
     8161 caaatgaatt tgcaaaaatt ttgcattcaa attgatttga ttgcacaaaa aaatagccga
     8221 acatccattc ggctattttt caaacacttt ttaccagctc tttgaccaat cggctaacca
     8281 tttttggata gtttcagtag tcggtggcgt aaattcaatg gttttatagg ttggcattgc
     8341 cgcaaaagcc ggatcaacgc cgtcggttaa aaccggattc attacgttgt ggtaagaaat
     8401 aatatgttgc gattccggtt tgtgcaaaaa ttcaagaaat tgatttgcca atgctttttg
     8461 ttggctgctt ttgacaatag ccgcattttc tacttgcacc aaatgccctt cctcaaacgg
     8521 agcagccaca tatttatcgg tgttttcgtg ccacttatga tataaaggcg atgtagtata
     8581 gcttagtacc aaatccgact cgccttttaa gaacgctcca taagtttcag accaaccttt
     8641 gcctaccgtt accgtatgtt ttgccaatgt tttccaagca gttggagctt catcgccata
     8701 cacttgattt acccacatta agaagccccg cccaacgctg ctggtacgtg ggtcttggta
     8761 aatcactttt aaatcttggc gttccaccaa ctcttttaaa ctttttggtg gatttttcag
     8821 cttctcttta tcgtaaataa aagcataaga acccgtgtca taagggaaga aaattttctg
     8881 ttgggtttct aatttggtct ttgcttcaaa ctcggcaaac aagccacttt tttcggcttc
     8941 aggttgcagg aaattatcaa taccgaccac cacatcagct ttggtttttg ctccctccaa
     9001 acgcaagcgg ttgaacatcg ttacgctatc gtcaagcgga acaaatttga catcacagcc
     9061 acactctttc tcaaaattct gctctaattt aggagcaggt ccatattccg aagcaaacga
     9121 gctgtaagtg taaacggtta aggtcggttg attggcataa acacttgcac ttaataacgc
     9181 aagtgaagag aggataaatt tcataacaat tccttctaaa ttaaatgaat agaaggattt
     9241 aagaaaggca agttgctatc tcaaatccct acgctgatat taatcagatc aggttctatg
     9301 ggtatttctc agccacaagc ggttaaattt cggcaaaaat ttgcaaattt ttacgcaaaa
     9361 acaaccgctt gttgcacccc aatgagaacg gcttcattgt aaaaagtttg caggcagatt
     9421 tcaaccaaag caaacgtttg ctatttgtat taaaaatccg tatactaccg ccctagtcca
     9481 aacaaggaac tagaaatgaa ttgcacaaca tcggttaaat caaattccca acagctacgc
     9541 ttcaacttta gaggcgtagc tgtttttcta ttcatttcaa accattcaaa atcgctgtta
     9601 tagcgatttt ttttcgcacg cttgcaatta ccgcaagcgg ttgagccaca ttaacagaga
     9661 gaaaaggaat aaaaatgagc caattgattc gtaccctaaa aggacatatt cgtgatgaaa
     9721 tcatcaaaaa aggcggttgg gtaaatgcac acgcccacgc agatcgtgca tttacgatga
     9781 cgcctgaaaa aatcaccgtt taccaaaatg cgaatctaca gcaaaaatgg gatttggtcg
     9841 atgaggtaaa acgtaattca agcgtagaag attactaccg ccgcttttcc caagcgattg
     9901 aattgatgat ttcacaaggg gtaacggcat ttggtacttt tgtggatatc gaccaagtat
     9961 gtgaagacag agccattatt gccgctcaca aagcccgtga agtatataaa aacgacatca
    10021 tcttgaaatt tgctaaccaa acgttgaaag gcgtgattga acccaatgcg aaaaagtggt
    10081 tcgatatcgg ctcggaaatg gtggatatga ttggtggctt gccttaccgt gacgaactgg
    10141 attacggcaa aggcttggaa gcaatggata ttttaatgga taaagccaaa tcgctcggca
    10201 aaatgctcca cgtccacgtt gatcaattta actcacctaa agaaaaagag accgaacaac
    10261 tgtgtgataa atcgattgag catggtatgc aagggcgagt ggttgccatt cacgggattt
    10321 ccatcggctc gcacccgaaa gaatatcgaa aaatgcttta ccaaaaaatg cgtgatagcc
    10381 aaatgatggt cattgcctgt ccgatggcgt ggattgatag cggacgtaag gaagatttac
    10441 aaccgttcca taacgcttta acccctgctg atgaactcat tcctgaaggc attactgttg
    10501 ctatcggcac agataatatc tgtgattata tggtaccgct ttgcgagggc gatatgtggc
    10561 aagaactcag ccttttatca gcaggctgtc gttttactaa cctagaagaa atggcaaata
    10621 ttgccagtat caatggtcga aaagtactgg gtttagtcta actgaataaa cgaaaggcga
    10681 accctaggtt cgcctttaat aacagcataa ccgattattt aaacaagtta cccaaaatcc
    10741 cttttgccgc ttgagctaat aagtcatttg catcaaagtt ttttaagtct tcaacattac
    10801 cattcggggt taaagtatcc acgatttttg gcaagaactg ggctaataaa tcgctcgcat
    10861 cagcagcatc aacacccgct tcttgagcca cattttgaat gttttcttgc ccgaacacat
    10921 tactgatttg ttcgcccgaa acaggtgcat tgtcttcatc gctgctgatc caagtgcgta
    10981 acacatcatc taatccgcct tgttggaatt tggcaatcag cccttcaatc ccaccttgtg
    11041 aggcgagtaa attttgaatt aattgagttg cagttgattg gttattgcca ctcaatactg
    11101 aagaagccaa tgaacctaaa atatttccta acataatttc tcctatgcaa gcggtacaat
    11161 tttgcgaaaa ttttgcaaaa aaacagcaaa cttcgaccgc ttgtaatcac tttaacgagc
    11221 taaaatggct cgcactcttt ccaaatcttc cggcgtatcc acccccactt gcggggcttc
    11281 tttcgccggt tcgatatgaa ttttttcacc gtgccataag gctcttagtt gctcaaggga
    11341 ctcaagctgt tctaattgtg tcggctgcca cgccacatat tgtttcacaa aaccggctcg
    11401 gtaagcgtaa atgccgatat ggcgtaaata accttgagcg gcaacaaaac tgtcatcaca
    11461 atccggaaaa ctgtctctgg caaacggaat gctggctcgg gaaaaataaa gtgccattcc
    11521 gtttttgtct gccaccactt tcaccgcatt tgggttaaat agctcttctc gggtcgctaa
    11581 tttcacaccg agtgttgcca tattgacttg ataagcatct aaattttgag ctacctgagt
    11641 aacaattacc ggtggaatca gcggttcatc accctgaata ttcacaataa tttcgctgtc
    11701 ggcaatctgc attttttcga tcacttccgc caaacgctca gtgccggaat tgtgtttttc
    11761 cgaagtcata cagacttccg ccccaaaaga ttgagcgagg gcttcaattt cagggtgatc
    11821 ggtggcaata atcacacggc ttgcaccggc aagctgagct ttttcccaaa cgtgttgaat
    11881 catcggtttg cctgcaatat ccaacaacgg cttacgaggc aaacggctgg aagcgtaacg
    11941 agcaggaata attacagtga atttcatagg ctatccttat gcttcttgag catctaagaa
    12001 acgttctgca tccagggctg ccatacaacc tgtgccggca gaggtaatcg cttggcgata
    12061 gttatgatcc atcacatcac cggcagcaaa tacgccttcc acagaagtgg cagtagcatt
    12121 gccttccaaa cctgatttca ctttaatgta gccgttttca agttctaatt gaccttcaaa
    12181 cattgccgta ttcggtgcgt gcccaatcgc cacaaagaaa ccatcaacct taatttcttc
    12241 gctcaattct tctttggttg attttaaacg taagccggta acgcccatat tatcgcctaa
    12301 cacctcatca accgtacggt ctgtgtgcag aataattttg ccttcttcaa tacgtttttg
    12361 cagacgacca agcaagattt tttcagcacg gaagctatca cggcggtgaa ttaaatgcac
    12421 ttcacttgcc aaatttgcca aataaagtgc ttcttccaca gcagtattcc caccaccgac
    12481 taccgcaacc ggtttattgc gatagaagaa accatcacaa gttgcacaag ccgacacgcc
    12541 tttgcctttg aaatgctctt cagaaggcaa acctaaatat ttcgccgacg caccggtggc
    12601 aataattaac gcatcacagg tgaaagtgta taaatctccg tttagcgtga atgggcgttt
    12661 agataaatcc actgaatgaa tatgatcaaa cacgatttca gtttcaaatt tttcagcgtg
    12721 cttgagcatt ttgttcatta actctgtgcc ggtaatttgt tcaaattccc ccggccagtt
    12781 ctcgatttca tcggttgtag tgagctgtcc gccttgttgc ataccggtga ctaaaaccgg
    12841 gtttagattg gcacgggcgg cataaacagc agcggtataa ccggcaggcc ctgagcctaa
    12901 aattaaaagt ttggtgtgtt tagtggtcat aatgaatcct ctgaataaat attaatgttt
    12961 attttagcct aaatttcagt tcaactctat tttcgttttc gctcaacttt tttcaatttt
    13021 gtgacaaagt taacagaaat ccgactgtgt ttcttgtaaa ttgtgacagt ctaattcatt
    13081 taaaaggggc aaaaagatga aaaaattaat taattcaata gaaaccgtct tagatgagca
    13141 actttctggt tttgtgaaag cacattctga tttaacactt aacacagaac ctgtctatat
    13201 ttaccgcaca acgccaagta atcaacctaa agtagccctt atttccggtg gtgggagtgg
    13261 gcacgagcca atgcacgccg gttttatcgg taaaggaatg ttagacggag cttgccccgg
    13321 agcaatcttt acatctccaa cgccggatca aatgtttgaa tgcggtttag cggttgatcg
    13381 tggcgagggt gtattgctaa ttattaaaaa ctataccggt gatgtgctga attttgaaac
    13441 agccaccgag ctacttgcag atagcggtgt aaaagtcgca accgtgttgg ttgatgatga
    13501 tgtggcagtc aaagacagtt tatatactgc cggccgccgc ggtgttgcaa atacagtatt
    13561 aattgaaaag ctgttaggag ctgcagcgga taaaggctat aacttatccg aattagccaa
    13621 attagggcat cagttaaaca ataacgggca ttctatcgga attgccttat ctgcttgtac
    13681 tgtgccggct gccggtaagc catcatttac tttagctgaa aatgagatgg aatttggggt
    13741 aggtattcac ggagaaccgg gcattgaacg tcgccccttt gaaaatctgg atagtaccgt
    13801 gaaacaaatg tttgagacct taattgctca cggcgattat caacgtaaaa ttcgccattg
    13861 gaatacacaa acccaacaat gggacgaaat cgaagaaagc aaagtggcat tgaaaaaagg
    13921 tgatcgtgtt attgctttag ttaataactt aggagcagtg ccactatccg aactttatgc
    13981 tgtttatgat gcgttagaaa aagagtgcca aactttcggc ttaagcattg aacgcagtct
    14041 tgttggatca tattgcacct cgctggacat gcaaggtatc tctatcacat tactgaaagt
    14101 tgatgaggat attctcaaac tatgggatgc tccggtaaat acaccggcaa tgcgttgggg
    14161 tgaataatta gattgaaagg ataagttatg acaatatcaa aacaacagat cttaaaatgg
    14221 cttgaaaatt gccaacaggt aatgactgaa aaacgggatt atttaaccga attggatacc
    14281 gttattggcg atggcgatca cggtttaaat atgcagcgtg gatttagtaa agcacttgaa
    14341 aaagcccata ccgtgcaaga taaagatatc ggcaccctgc ttaaaaccgt tggaatgaca
    14401 ttattatcgc aagtaggggg agcgagcggc cctctctatg gttcattttt tattaaagcg
    14461 gctcaaggtg ctacaggcaa agagcaactg agctttaacg agttactggc acttctacag
    14521 caaggagcag aagctatcgt acaacgtgga cacgcacaag ttggcgataa aacgatgtgt
    14581 gatttatggc tgccattact cgaagactta gctcaagccg atagcactca accaattgct
    14641 caaatcttat tacaagcggt cgaaaaagca gaaaattttg caaatcaaac cgctccatta
    14701 atggcgaaaa aagggcgtgc cagttacttg ggcgaacgca gtatcgggca taaagatccg
    14761 ggagcaacgt ccagctacta tatttttaaa gccttagctg aagcattaca gtaggagggg
    14821 taaatggtta atttagtgat tgtttcacat agtgctaaac tggcggaagg cgtgggggaa
    14881 attttggctc aaatggcaca ggggggctgt aaaatcgccc ttgccggcgg cattgaggat
    14941 acctcaaatc ctatcggcac tgatgcggta aaaataatgc aagcgattga atcggtattt
    15001 agcccagacg gtgtgattgt gtttgtcgat ttaggcagtg caattttaag tacccaaacc
    15061 gccatagatt tactggagcc ggaacttgcc gaaaaagtga tcattagcta cgctccttta
    15121 gttgaaggtg cttttgctgc tgtagttgca gcctctgccg gcgatagttt agaagcggta
    15181 ttaaatgaag cgaacgaagc cgctgctctt aagcaggaac aagccaatta gtaaaaatgc
    15241 cgtatcgaaa aatacggcat tttagtttta ttagtacaat agtgaataaa gctgtcttct
    15301 aaatttcggc acaatcgggt ctgtacccag tgcagataag attgccagaa attggctttt
    15361 tacctcgccg ttcgctacat ttaaatccga ttttaaccaa tcaaaaagta acgtgagtgc
    15421 ttcttcattt ttatgagctt ggtgtagctg atttgccaat ttaatcgcaa tttcaggggt
    15481 tttgctgttc gcataatccg cttgaagctg ttgtaattcg ggcgattcgc tggcttgttc
    15541 caataattcg atttgggctt gcaaaccgtg ccaacggctg tctctgtctt gaatcgggat
    15601 cgctttaagg atttcacgag cctcttccac gcttttcatt gcaatgtaag tttcggcata
    15661 gagcaaagcg aaatcgctgt ttttcttatc ggtcatttcc cacgctgatt tcagcagcgg
    15721 caaggcttcg gtataacgct gatcttgcaa taattccaag gcttgttgaa atttcagctc
    15781 ttcctctttc ggtaaaatat ttgccaaccg aatccgtaat tcctgctcac ttactgcacc
    15841 ttgaattgca tcaatcggct gaccgccggc aaacaaatag agcgttggaa tttgttgaat
    15901 gcgaaattga gcagccaatg cttgttgctc atcacaattt accgtcgcca ataaaaattg
    15961 gttagggttt tcatccgaaa tacgacgtag taaggcatcc atttccaatg aagccacttc
    16021 ccttggcgaa ataaaatgaa acaccgtcgg cacttgtgcc gctgctgccc atacttcact
    16081 aaaattctgc tcgtttacat ttacaaagta gtccatacaa aaccttctta agctaaaaat
    16141 tactttttat attgtagcat taataagaag tttcaatagg tagcccgttt ctctcccacg
    16201 cttcaaaacc accttttaca ctataaacat tctcaaaccc ttgttcgatt aaaaactgtg
    16261 ctgtactttg gctactcact ccgtgatagc aaatcacaac caccggttcg tcataatcga
    16321 cctcgtctaa aaacttacca taactctggt tggttaaatg aaacgcatcc tgtgggtggc
    16381 tgtaaacata acggcgggca tcacgcacat cggcaagcac cgcaccttcg ttttcgatta
    16441 attcccaagc ctgttgcggg ctaatttctt taaatgtagt ttccataatc actttccctc
    16501 aaaaaacgtg caactatacc ataaaattct aaaaagaatg gctattattc caagttgaaa
    16561 atttgatgtt tgtcagatat aattgcaaac tattttcaaa tgcactgatt taaaactacc
    16621 acagtttgag gattttatgg agcaattatt tcaattttta gaacatcata ctgactttgt
    16681 tatattagga ttactaggct tattaagcgt aatctgcctt tggaaagcta ttgaacgtat
    16741 tatgttttat tccaaagtag atatttcaaa atacgatacc ctcgaagaat tagacatcga
    16801 tttaacccac aatttaacta ccatttcgac tatcggctct aatgcccctt atatcggctt
    16861 attaggaacc gttgtcggta ttcttttaac tttctatcat ttaggtcaat caggtggtga
    16921 tattgatgcg gcctctatta tggtaaacct ttctttagct ctaaaagcca ctgctgtcgg
    16981 tatcttagtg gcaattattg caatggtttt ctacaatggt tttggtcgta aagtggaaga
    17041 aaacaaactg aaatggttgg cattacaatc aaaaaagcct catcaagcgg tgtgatttag
    17101 tccatttttt gcaaattaat aaggcagaac aatgaaaaaa ttcgatgaaa tcaacatcat
    17161 tccatttatt gatattatgt tggtattact ggctatcgtg ttagttaccg cctctttcat
    17221 ttctcagggt aaaatccaag taaatgtacc gaaagcaagt acaacacagc caatgaaagc
    17281 agacgattta gcgaagcttt taaccattac cgaaaataat gagtttttct ttaatgatca
    17341 agcaataact aaagagcaat taattgctga agttgccact tgggataaaa gccaaaaagt
    17401 gtcactcaaa gttgatggtg cagtcgcctt cgaaaaattt gtggaattaa ccgatatcct
    17461 ttctgcaaat gaaattaaaa atgtagcaat cattactaaa aaagaaactg ctccagcacc
    17521 ttcaagcaca cctggtagcc ctgcacaagt gccagcagtc gcaccttaaa tagggtaaac
    17581 aggtatgaaa aaaaaacatt ctcgtatcgg cttattggca tctttggcta ttcacactgc
    17641 cttaattggt ggcacttttg cttggttaca taaccacaaa gtggaaaaaa ttgccgagca
    17701 aaactctctt tctatggaaa tggtggcagc attattagag caacctcagg ttgccgttgc
    17761 tccggatcct attaccgaag aggtcaaaga aatcgaaccg gagaaggcag aagtaccacc
    17821 tgaacctaag cttactccgg agccaactcc agagccggag gcaattccag atcctacgct
    17881 aaatccgaaa aaggaaaaac cgaaagaaga aaagcgtaaa gagcgacacc accataaaca
    17941 taagcatcgt cacaaagaga aaagggaaga gctacaagag caagaaaaac cgaaagataa
    18001 gcctaaagag cgcccgaaac atcatcacaa gcatattaaa gcattagagc gcgggccaga
    18061 gataaaacaa ggtattgtcg ctaaagcgat tccaaatgcg gctgaaggtg aaaaagtggt
    18121 tgcgggggtt gttggagggc aaaaaaacgg ttcaccaaat tcaacctcaa ctacaggttc
    18181 agcaaatact ggggctagca gtggtaatgc cagtgaactt gctgcttata aagtcgcatt
    18241 acagcgagca ttacagcgta aggcgaataa ctcttaccct cagcgtgaaa aaatgatgcg
    18301 gaaaaccggt acagttacga ttaaatttac cattacatcg tccggttcaa ttacaaatgt
    18361 atccgtactc aattcatcgg gaaatagtaa tttagataac gctgcggtac gcagtgcaga
    18421 aggtttgagt atgcctccgc caccggcagg cttccctcct acggtaacag taccggtaag
    18481 atttgccctt gaataaaaac agccctcaaa agcaatgtac ttttgagggc tttttattgc
    18541 aaaaaattga ctaaaaatga ccgcttactg cttgcgaata tcgccatttc tcacattcgg
    18601 actcacttca cccgtacgag tttctgtgct taacgaggta gaatttactt tcgtaaaagt
    18661 ataatccgct ttgctgaatt cacctgtttg attatttaag aagaaattgc ggtactcttt
    18721 tacccataat gccgttgcgc cacaaactgc cacaggcata actactaaat tcacaaatgg
    18781 aatcatcgtg aataggctca ctaaagcacc aaaggtaaaa tttaaagtgc gagactgcga
    18841 caacgcattt cgcatacgct gaaaactgat tttatggtta tcaaacggat agtcacaata
    18901 ttgaatggcg atcaaccaag caccgaagat aaaagtcagc acaggtgcta cggtttgccc
    18961 aaccacaggc aaaaagccta atacaaaaag agcaatcagc cttggaatgc tatacatcat
    19021 tttttgccat tctcgtttca gcattcgagg cacatctttt aacattgcac cgaatgacat
    19081 atcgcccaaa ggctcgccgg taagttgcag ttcgactttt tctgctaata acgcattaaa
    19141 gggagcagca acaaagttag ccaaggtagt aaaagcaaaa taaaatccca ctaatatcat
    19201 caaaaaaatc agtggaatca gtacaaagct aagccattcc agccagcttg gcagtaacat
    19261 atccaacaag ccaccgatat tggcaaaaaa tccccaaatc agccctacca tcagcacggt
    19321 attaataaga attgggaaaa tcacaaaagg caaaaattga cgttgtaaca ataaccgcca
    19381 gccatatata aaataatgaa agcctaatcc gacttgattt tgcggctcag aaaaaactga
    19441 agacataatg attccttatt ttctatcaaa attaattaga aatatggtaa gctacgcaca
    19501 ttattttcgc aaatatgaaa atacattttt tattgattat ttgataaaga ggacacaatg
    19561 gaactgcata ttattttttt tattcttgcc gggctactga ttgctgtact aattggattt
    19621 agcctttggt ccgctcgtcg tgaaaaatca aatatttttt caaatacatt ctcgaccaga
    19681 cctattgctg tgccaccaca gaataataaa atgagcaata gcatcccaac ctcattacag
    19741 ccacaaaatg aggattatca agcaatgtct gtgccggaag aaaatccgca acagatacaa
    19801 caggaagttg aaagctcgct gcaaaatatc aaaatcagtt tgccgggcgg aaatcctcag
    19861 caacagcctg agcaaattca gccgatacaa tcggtagcag aaccaacggt tagcacttac
    19921 ggtcagaaaa tttctaatca gcaacatatc caatacaata cgccggattt tgcaaaccca
    19981 atggtgaaca cagtggtgga agaaacacct caagcagtag ctatcgaacc tcaagaaacc
    20041 caatcggcag aggaagaaaa tccatttgta accctctatc tttacgcacc acaaaatgaa
    20101 gctttccgcg gtgattttgt agtacattat ttagaagaag ttggcttacg ttttggcgaa
    20161 caccaaattt tccaccgcca tcaacatatt gatgattcat taagtccgat tattttcagt
    20221 gcagcaaatt taatgaaccc aggaaccttt gatttaaata atatctcaaa ctttgcgaca
    20281 gctggtttag tgctatttat gcaacttcca accgaaggca atgatgtggc taatatgaag
    20341 ttgttaatca gtaacgctga acacttagca gcatcgttag ggggattctt atatgacgat
    20401 aatcaacagc cttttggcga agaatcccgc caacgttata tgcaacgtgt gatgcactaa
    20461 ttgcgaaaaa attaataaat ccgaccgctt gtacaagcgg tcttttttgt agagaatttt
    20521 accaatgtct ttatttaacc aaacctcttt atttgaagag aatgccacgc ccgagttagt
    20581 cgagaaaatc gaaactattc gccaaacatt gcgtcaatac gagtatgaat atcacgtttt
    20641 agataaccca agcgtacccg atgccgaata cgaccgttta atgaacgagc tgaaaaatct
    20701 ggaatggcag cacccggaac tgattagtgc cgactcgccg actcaacggg ttggtgccaa
    20761 accgctggca ggctttgctc aagtcaccca cgaaatccct atgctttcgt tggataatgc
    20821 cttctccgat gaagacttag atggcttttt acgccgtatg gaaagctata tcaccgcctc
    20881 tccttcgcaa ctggaatttt gttgcgaacc taaattagac ggcttggcag tgagtatttt
    20941 atacgaaaac ggtatactta cccgagctgc aacccgtggc gatggcacaa ccggcgaaga
    21001 aattaccgct aatatccgca ccattcgcaa tattccgtta aagctcaaca cgactaatcc
    21061 acctgctcga ttagaggtgc gaggcgaagt ctttatgcca caatcaggct ttaatgagct
    21121 gaatgagaaa gccttagcta aaggcgaaaa aacctttgcc aaccctcgca atgccgcagc
    21181 aggttcgctt cgccagttag atccgaaaat cacccgccag cgtccgttag tgctgaatgc
    21241 ctacggaatt ggggtgtatg aaagcgatga cgaactgcca gccacccatt tcgaacgttt
    21301 gcaatggctg aaatcgcttg gtattcctgt aaataatgaa atccgcttgg ttcaaggcaa
    21361 agctgctctc ttggcttatt atgcggagat tcaggctaaa cgcccaacat taggctatga
    21421 tattgatggc acagtattga aagtaaatga cattgcccta caagagcaac tcgggtttat
    21481 ctctcgctcc tctcgttggg cgattgcgta taaatttccg gctcaagaag aaatgacaat
    21541 cctcaaagaa gtggacttcc aagtgggaag aacaggggca atcacccctg tggcgaaatt
    21601 agagcctgtt tttgtcgctg gcgtaacggt aagtaacgca acgctacaca acggtgatga
    21661 aatcgagcga cttggtattg tgattggcga tacggtaatt attcgccgag cgggcgatgt
    21721 aattccgcaa attacaggcg tgatgttaga acgccgcccg gaaaatgcaa aaaaaattga
    21781 atttccgacc gcttgtccta tctgtcactc cgctgttact cgggtagaag gcgaggcagt
    21841 agcacgctgt accggtggtt tattctgcga agctcaacgt aaagaagcct tgaaacattt
    21901 cgtttcacgc aaggcaatgg atattgacgg cgtaggcgaa aaactaatcg agcagttaat
    21961 ggctcgagag ctgattgaaa cgcctgccga tctgtttaag ctcgatcaca ctaccctaat
    22021 gcgattagag cgaatggggg aaaaatcggc tcaaaatgct ctcaacagca tcgaaaaagc
    22081 aaaaaacact actcttcctc gctttttatt ctcgttaggt attcgtgaag tgggcgaggc
    22141 aaccgctctc aacttagcca accattttgg tagcttagag gcgatccgcc aagccacttt
    22201 tgagcaatta aaagaagtgc aagatgtggg cgaggttgtt gccaaccgta ttgtcagctt
    22261 ctggcaagaa ccgcataatg tggaagtggt ggaagatttg atcgctcaag gtgtacgttg
    22321 ggaaaacgtt gtgaaagccg aaattgtaga taacccgtta aaagataaaa acgtggtctt
    22381 aaccggcacg ctaacccagc tcacccgtga tgaagccaaa gccctattac aaagtttggg
    22441 ctgtaaagtc tccggctcgg tttccagcaa aaccgattac ttaatcgccg gcgaaaaagc
    22501 cggttccaag ctggcaaaag ctcaagagtt gggaattcag attttaagcg agcaacaatt
    22561 tattgagctt actcaacatt aacaaacaaa ggggcagatg attgaaatct gccccttatt
    22621 ctatctattg aatgcttaaa agcattaacc aatcaattta aactgctgag ctaaaaacag
    22681 taacgtaaag ctagttaagt aaattaagcc gataactgcc aaccaaaata accagccttt
    22741 tgcacgatgc tcacctttta gcactaaaga gaaatttaac cacgcaaaaa caggggtaga
    22801 aacaaatgat gaaatcattg caaattgtaa cattttcgcc acatcactca taaattggct
    22861 aataattaaa atgccgatga gtgcagttac cgtcatccaa atacttaatt ctgtttgtga
    22921 atgttgctta cgcccgctaa ttaaacgcaa cgcttctgca ttcgctcgtg aatatccatc
    22981 aataacagtg atcgttgtgc cgaacataca cataaatgca ataaatgcga ttaaaagctt
    23041 agaccagtca ccaatcgcaa aagcatacat tttgattaat tgagcaatat aggcaacacc
    23101 ggcttgttct actttctcac ctgaaccgta ctgaactaac gcacctaatg ctaaaaaaac
    23161 aatcgccaaa attgccgtgc cgatataacc cacattaaaa tcaaaaatac cgtcctcata
    23221 attcacttta cttaaacgtt ttttcgcaat aacccacatt gagttaatgg cagaaatttc
    23281 aattggtgca ggcatccagc ccattaatgc aacgatgaac acaagtgctg ctaaattcca
    23341 cggcgaaggc tctacgaaat ctggagcaat ttcaacgcca ccttttaaag cagcaatgat
    23401 cacggcagat accgtagaga tggttaaagc aatcataatc catttagata atgtatctaa
    23461 gaatttatat tgccctagaa gtaaaatacc ccaagtgacc acaatcacaa tagttcctgc
    23521 cattggaatg cttaaatcta acggaatacc taaagcagaa aaaataaatt ttagaatcgc
    23581 tgctgaaaca atcgccaccg cagctgtgtt aatcattgca gcaaaaacgt taaggataaa
    23641 gaaaataata agataaaact ttcctttttc tttgtagcct tccaataaag ttttaccgct
    23701 agctaaggta tattgcacac caaagcggaa aaacggatat ttaaataaat tggctaacag
    23761 aataataatc gccagctgcc agccataaat cgcaccagat tgtgtagagg caataatatg
    23821 cgaaccaccc actgccgcag atgccatcaa aatccccggc cccattgcag caaatttact
    23881 ttgccaagtt gaatgttcta tttgttgtgt catatagctt tccttatcac attactatca
    23941 aaacaagatg gtttcattct acttataaaa accaaataaa aacactcctc
//
LOCUS       DANMGB010000014        23648 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.014, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000014 DANMGB010000000
VERSION     DANMGB010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23648
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.014"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2..1300
                     /gene="pilQ"
                     /locus_tag="PXG19_000449"
     CDS             2..1300
                     /gene="pilQ"
                     /locus_tag="PXG19_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL6065781.1"
                     /translation="MYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDN
                     IETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPIMNLQN
                     NGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSNSLIVK
                     DSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGG
                     RLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPR
                     LLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIV
                     TQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIP
                     FIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1381..1794
                     /gene="nusB"
                     /locus_tag="PXG19_000450"
     CDS             1381..1794
                     /gene="nusB"
                     /locus_tag="PXG19_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL6065782.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1857..2837
                     /gene="thiL"
                     /locus_tag="PXG19_000451"
     CDS             1857..2837
                     /gene="thiL"
                     /locus_tag="PXG19_000451"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL6065783.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2842..3315
                     /locus_tag="PXG19_000452"
     CDS             2842..3315
                     /locus_tag="PXG19_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL6065784.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3322..3945
                     /locus_tag="PXG19_000453"
     CDS             3322..3945
                     /locus_tag="PXG19_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL6065785.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4057..4662
                     /gene="ruvA"
                     /locus_tag="PXG19_000454"
     CDS             4057..4662
                     /gene="ruvA"
                     /locus_tag="PXG19_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL6065786.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4799..5803
                     /gene="ruvB"
                     /locus_tag="PXG19_000455"
     CDS             4799..5803
                     /gene="ruvB"
                     /locus_tag="PXG19_000455"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL6065787.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5902..6585)
                     /gene="artM"
                     /locus_tag="PXG19_000456"
     CDS             complement(5902..6585)
                     /gene="artM"
                     /locus_tag="PXG19_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL6065788.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6585..7256)
                     /gene="artQ"
                     /locus_tag="PXG19_000457"
     CDS             complement(6585..7256)
                     /gene="artQ"
                     /locus_tag="PXG19_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL6065789.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7256..7981)
                     /locus_tag="PXG19_000458"
     CDS             complement(7256..7981)
                     /locus_tag="PXG19_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL6065790.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8007..8741)
                     /gene="artP"
                     /locus_tag="PXG19_000459"
     CDS             complement(8007..8741)
                     /gene="artP"
                     /locus_tag="PXG19_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL6065791.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
     gene            8949..10712
                     /locus_tag="PXG19_000460"
     CDS             8949..10712
                     /locus_tag="PXG19_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL6065792.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
     gene            10722..11291
                     /locus_tag="PXG19_000461"
     CDS             10722..11291
                     /locus_tag="PXG19_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL6065793.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            11517..13295
                     /locus_tag="PXG19_000462"
     CDS             11517..13295
                     /locus_tag="PXG19_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL6065794.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(13328..13672)
                     /locus_tag="PXG19_000463"
     CDS             complement(13328..13672)
                     /locus_tag="PXG19_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6065795.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(13681..14229)
                     /locus_tag="PXG19_000464"
     CDS             complement(13681..14229)
                     /locus_tag="PXG19_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL6065796.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            complement(14256..15293)
                     /locus_tag="PXG19_000465"
     CDS             complement(14256..15293)
                     /locus_tag="PXG19_000465"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL6065797.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            complement(15435..15761)
                     /gene="grxD"
                     /locus_tag="PXG19_000466"
     CDS             complement(15435..15761)
                     /gene="grxD"
                     /locus_tag="PXG19_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL6065798.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            complement(15833..16438)
                     /gene="recR"
                     /locus_tag="PXG19_000467"
     CDS             complement(15833..16438)
                     /gene="recR"
                     /locus_tag="PXG19_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL6065799.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            complement(16446..16775)
                     /locus_tag="PXG19_000468"
     CDS             complement(16446..16775)
                     /locus_tag="PXG19_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL6065800.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            16915..18000
                     /gene="recF"
                     /locus_tag="PXG19_000469"
     CDS             16915..18000
                     /gene="recF"
                     /locus_tag="PXG19_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL6065801.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            complement(18191..19312)
                     /gene="tyrA"
                     /locus_tag="PXG19_000470"
     CDS             complement(18191..19312)
                     /gene="tyrA"
                     /locus_tag="PXG19_000470"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL6065802.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(19367..20425)
                     /locus_tag="PXG19_000471"
     CDS             complement(19367..20425)
                     /locus_tag="PXG19_000471"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL6065803.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            complement(20465..21502)
                     /locus_tag="PXG19_000472"
     CDS             complement(20465..21502)
                     /locus_tag="PXG19_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6065804.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            complement(21598..23037)
                     /gene="pyk"
                     /locus_tag="PXG19_000473"
     CDS             complement(21598..23037)
                     /gene="pyk"
                     /locus_tag="PXG19_000473"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL6065805.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            23164..>23648
                     /gene="sixA"
                     /locus_tag="PXG19_000474"
     CDS             23164..>23648
                     /gene="sixA"
                     /locus_tag="PXG19_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL6065806.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
BASE COUNT         6956 a         5085 c         4559 g         7048 t
ORIGIN      
        1 tatatatttc ttatgcggtt tttcattagc ctatgcgaat accatttcca tagttttaaa
       61 aaatgctcca acttcgctta tttttactta tttagcggaa gaaaccggta aaaatatggt
      121 gcttgatgat aatattgaaa ccaaatcaac actacgatta gaaaataaat cggttgacga
      181 gatttttaaa acgcttggca aagtcaataa attatcctta acgcaagaag atgatattgt
      241 ttatattcac aaaaaagagg aaaaagcggc tgacttaacg cctctgccaa taatgaattt
      301 gcaaaataat gggcaaaata caccgcttgt caccgcccct aagttaatca caaaaacctt
      361 gaaactacat tatgcaaagg cttcagaggt gattgagtcg ttaaccaaag gcagcggaac
      421 gtttttatcg gaaaacggtt atattcactt tgatgaaaga agcaatagcc tgattgtgaa
      481 agacagtgca aaatcgctta aaaatatcga gaatttagta aaacagctcg accaacccac
      541 cgagcaaatt gcgattgagg ctagaattgt cactatcagt agcgagcatt tgcaagagct
      601 tggcgttcgc tggggaattt tttctcgtgg ggctgggcac tataaatttg gcggacggct
      661 ggaaggcaat ggactcaaca atgtcaccaa taacttaaat gtaaattttc cgattactgg
      721 tggagcatct gccgtattac aggtttcgtc cattaatagc agagtgcttg atttagaatt
      781 aagtgcatta gaacaagaaa atagtgtgga aattattgcc agcccacgcc tgttaaccac
      841 caataaaaag ccggcaagta tcaagcaagg cacggaaatt ccttatgtga tgtacaacac
      901 caaatcggaa gccaccgatg tcgaatttaa agaagcggta ttagggcttg aagtcgttcc
      961 acacctttca acccaaaatc aaattctact cgatctgatc gttacccaaa attcgccaaa
     1021 ttcccaatcc ggcagtagtg gcttaattac gattgataaa caagagctaa atacgcaagt
     1081 atttgccaaa cacggcgaaa ccattgtact tggtggtatt tttcaacatt taacccaaaa
     1141 aggcgaagat aaagtgccga ttttaggctc aattcccttc atcaagcggt tatttagtca
     1201 aactcgagat aaaatcagca aaagagagct agtcattttt gtgacgcctt atatccttca
     1261 atctaatgaa aagagcagca accgcaaaaa atcaaaatag cacatcataa acgcaagcaa
     1321 aaatagggga agtgtgatag aatcagccgt cattttttga gttaaagatt tagaggtttt
     1381 atgaaaattt ccccacgtcg ccgtgcaaga gaatgtgcgg tgcaagccat ttattcttgg
     1441 tatatttccc aaaacacggt tgaagaagtg gaattggcgt ttgtgaccga tcaagatatg
     1501 aaaggcgttg atatgcctta tttccgtaaa cttttccgtg gcgttgtgga taatgtagaa
     1561 gccattgatg aagcattacg cccttattta gatcgtaaag agtcagatgt tgatcctatt
     1621 gaacgttcta ttttgcgttt atcaacttac gaattaaaat ttgaacacga tgtgcctttc
     1681 cgtgtagtca tcaatgaagg gattgaagtc gctaaagtgt tcggctctga tgacagccac
     1741 aaatacatta acggcatttt agataaatta gccccagcat taggcagaaa ataataagat
     1801 tccccaattt atacataaat tggggatttt gattataacg ctcaaggaga ttttttatgg
     1861 gtgaatttga tattatcgaa cgctatttta atgcttctca acgcccacct cgcaaagatg
     1921 ttttactttc tatcggcgat gactgtgcgc tcacatcact caaaccaaat cagcaacttg
     1981 cgatcacaac cgataccctt gtttgcggca ctcattttct accgactatt tcacctgccg
     2041 atctcgctta taaaagtgtg gcgtccaatt taagcgatct tgccgcaatg ggtgcagaac
     2101 ctgcatggat ctctttagcc ttaaccttac ctgaaattaa tcacgattgg ctagctgaat
     2161 ttagtgaaca tttctttgag attcttgatc actataatgt tgatttgatt ggaggggata
     2221 ctacttgtgg accactatct ttgacaatca cagctcaagg gattgtgcca caagatagag
     2281 gcttattccg ccataatgct aaagtaggcg attggatcta tgtttccggc acactcggtg
     2341 acagtgcagg tggtttgcaa cttctgctaa atcagcaaag cgagcaagtg aattggaata
     2401 aagagcaaag ctacctgatt caacgccatt tacgcccaac acctcgagtt ttacttggct
     2461 tgactatcgc ctctattgct aatgcagcga ttgatatttc agatggtcta ttgtctgatt
     2521 taagccatat tttaaagcgc agtgactgtg gtgcagtatt aaaccttgag aatttcccct
     2581 tgtctgacgt cttacttagt tgttattctc gaacagaggc agaatatttt gccttaaacg
     2641 gtggcgaaga ttacgaactc tgctttaccg tgccaaatga caacaaagcc aaattagaca
     2701 aagcattagc caatatcgga gtaacttata catgtattgg gcaaattcgt tcggctaaag
     2761 aaggtttaac cctattacgt cataatcagc ctgtcacctt gccctcacaa cgaggctacg
     2821 atcattttaa aaaataacgc aatgaaacca attaatctta aaaatccgat tcattttttt
     2881 gcctttggct ttggttcagg cttattaaag cctgctcccg gcacctgggg tagcctcgcc
     2941 gggctaattg tagcaatagc cttgtggtct atcacacaat ccgccctgtt tttcggctta
     3001 ctcaccctag tttcttttat tgccggttgt gttatttgca ccaaagccag ccaagatcta
     3061 gaagtacacg atgacgggcg aattgtttgg gacgaaatag ttgccatctt tttgatgttc
     3121 acctgtttgc ctgaatacaa tcttcttggc tacctgctcg cctttatcag ctttcgcatt
     3181 tttgatattt tgaagccttt tccaatccgc tattttgatg aaaaattaga aagcggttta
     3241 ggcattatgt ttgatgatat tctcgcagcc atttttgccc tgatttcact tcatctttta
     3301 tattatttca tttaaaaatt tatgctcact attttattta ttcattttgc cgggcttatc
     3361 agccccggcc ccgatttctt ctatgtcgtc agacaatccg ccagccactc agttaaaagt
     3421 ggggtacttg ccgcaaccgg aatctcaatc ggcattattt tttgggcagc ctttgcgatt
     3481 tttggtttag cgtggctcag taatagtatt ggctcgctgt ttcaatatgc cattatgatt
     3541 atcggtggct gttacctggt ttatattggc tctcaaatgg tacgggtaac cgaaaatatc
     3601 atttttgttg aaaataaagc tcaactcacg ccgctaaacc cttggcagga aattaaaaaa
     3661 ggcttattaa tcaatatctt taatgccaaa gctggcgttt actttaccag cgtcatttca
     3721 gcctatgtag ataatttaag caatacccta caaatgttcg aactacttct actctttgtg
     3781 gtaagtacct ttatttattt ctgtgtggtg gcactactct tttctcgccg accggtcaga
     3841 ctgttctatg ccaaatatag tcgctatatt gacaatatct caggcgtaat tttcatctta
     3901 ttcggctcga tgctgattta tgaaggattc agccacttta tctaatcaca agcggtctga
     3961 tttcactaaa aatttgcaaa ttccgctatc aataaatagt gttattttat acagtttctg
     4021 ctatgctact gccaatttta actctgagag aacaaaatga ttggacgatt acacggcaaa
     4081 attattgaaa agcaaccgcc tgaaatttta ttagacgtgc aaggggtagg ctatgaacta
     4141 ctgctcccga tgaccagttt ctacagcctg ccacaaattg gcgaagaggc gactattttc
     4201 acccatttag tggtgcgaga agatgctcac ttgctattcg gctttgccca aaaacaagat
     4261 agaactctat tccgtgaatt aattaaaacc aacggtgtcg ggccgaagct cgcgttggca
     4321 attctatcag caatgtcggt gtcgcaattt gccaccgcga ttgaaaatga agagctggca
     4381 aaattaacca aaattccggg aatcggtcgg aaaaccgcag aacgcttatt ggtggaactc
     4441 aaaggcaaat ttaaaggaat ggcacagagt gatttctttg tggaagtatc gcacgagcaa
     4501 attgtggcaa gtaatacgcc agacccggca aatgaagccc ttgatgcctt aatagcccta
     4561 ggctacaaac ctgccgatgc ggaaaaaatg attaagaaag tgaataaatc cggtgcaacg
     4621 agcgaacagc ttattcgtga ggcgttaaaa aattcattat gatattgata gtatagggcg
     4681 aaagatattt cgcccctaca atctcatttt taaaaatata tgtgtagggg caaatcaata
     4741 tttgccctca tgagtaatat agggtaatac cattccacta caacaataat ctaaatgtat
     4801 gattgaagca gatagaatca tcagtgcctc gcctaagcgt gaggaagaag ttatagaccg
     4861 agcaatccgc ccgaaactgc ttgccgacta tgtcgggcag ccttctgtgc atgatcaaat
     4921 ggagatcttc atcaaagccg ctaaattgcg ggaagaggca ttagatcact tgctcatttt
     4981 cggcccgccc ggtttgggga aaactaccct tgccaacatt gtggcaaacg aaatgggggt
     5041 gaatattcgc acaacttcag ggccggtgct ggaaaaagca ggcgatttgg cagcaatgct
     5101 gaccaacctt gaaccttacg atgtgctgtt tattgatgag attcaccgcc tttctccagc
     5161 gattgaagaa gtgctttatc ctgcaatgga agattaccag ctcgatatta tgattgggga
     5221 aggacctgct gctcgttcca tcaagctcga tctaccgcct tttacccttg taggggcaac
     5281 cacccgtgcc ggctcactga cctcaccgtt acgagatcgt tttgggattg tacaacgctt
     5341 agaattttac tcagtggacg atcttactct gattgtcaaa cgcagcgccg attgcttaaa
     5401 tctcaatttg tcggcagacg gtgcttatga agtggctcgc cgctcccgtg gcacaccccg
     5461 tattgccaac cgcttactcc gccgagttcg ggattacgcc gatgtgcgta ataatggcat
     5521 tattacctca gacattgcca aacaagctct ggcaatgctc gatgtggatt cggaaggctt
     5581 tgattttatg gacattaaac tgttgcaagc gattgtagaa cgctttgatg gcgggccagt
     5641 tggattagac aatcttgcgg cagctatcgg cgaagaacga gatacgattg aagatgtgct
     5701 agagccttat ctgattcagc aaggctttct acaacgcaca ccaagaggca gaattgctac
     5761 cagcagaacc tatgcccatt taggtataac ccaaatagat tagtcatatt tctaaaggca
     5821 ttgatacata aataaaaagc ggatagttag tactatccgc tttcatttgc aaaaaatcaa
     5881 taaaatttga ccgcttatcc gctaggcttt ttcagtctca aaacgctcaa aagctaatac
     5941 tctgctttct aattttctga gaacgattgt cataatgccg gtaattacca agtaaataac
     6001 ccctgccata ccataaattg ataatgcgtc atactctgta ccataaagct ggcgagcata
     6061 gcccataata tccataatcg taatggttga agcaagcgat gtgcctttaa aaactagcac
     6121 aatctcatta ctataagaag gtaaagcacg ttttaatgcg taaggcacta aaattttcag
     6181 tgtatctaaa cggctcaaac caagggctgc gcaagtttcc cattgcccct tcggaatcgc
     6241 ttttaccgca ccgtggaaca acaatgtcga ataggcagca ctgtttaacg ctaaagccaa
     6301 cattgcacag aaccaagcgt cggataataa tacccaagcc gcactttctg taatccattc
     6361 aaattgcccc gggccactat aaatcaagaa aaattgaatt aataaaggcg ttccggtaaa
     6421 aagcgtaata aatccgttta ccaaccactt taacggacga ttttctaacg agagaataaa
     6481 cgtaagaatg atcgctaaaa taaaggcaat gatgagcgcc acaaaagtga gctgtaggct
     6541 ggtgccaata ccctgtgaaa tttcaactaa ataatcccac cacattaagc aactcctcgc
     6601 tcaaaacggg taaatctacc ttctaatact ttaatcactc gctggctaat tagagtaatc
     6661 gctaaataaa taagtgctgc tatcccatac caagtaaaag gttgatgagt attagcatta
     6721 attaactccg attgacgcat taaatcatct accccaatta acgataccaa tgccgtatct
     6781 tttaacagca ctaaccactg attgcttaag cctggtaaag cgtgtcgcca gacttgaggg
     6841 agaataatgc gaacaaatac ttgcgctcgg cttaacccta acgccgtacc agattcccac
     6901 tgcccaactg gaatagcttt aattgcacca cgtaaagatt gggaagcata agcagcaaaa
     6961 ataataccca gcgcaatagc cccacaccag aaagcattta actccgcaaa ctcatcggtg
     7021 atcaagaaaa taacttggat aagaccaaaa tagatcaaaa ataccactaa aatctccggc
     7081 aacccacgca ataatgtaat tattatacta gttggtttac ggatacatgc aatcttactg
     7141 gtttcaagta ccacaaaaaa gattgacaat aacattccaa tcaagaggct tgccagcgca
     7201 atccctaagg tcatcagggt tgcgttgaca agtaagttta aaatatcgct agacattatt
     7261 tcccagccat ccaagtatta taaatttgct catatttacc atttgttttg atggtagcta
     7321 aagccgaatt taatttttca agcaatgcag tgttagattt atttaccgca ataccatatc
     7381 cattaccaaa aaaggcttta tcgactactt tttcacccac gaaatctaac tctttttcgg
     7441 tttttagcca ctctgccaat actggtgtat caccaaatac catatcaaca cgtccatttt
     7501 ttaaatctaa cactgctgat tgtaggctag cgtaaggttt taaattatat tgtttggcat
     7561 ttttgcttaa gtattgttga aaagttgtac cattttgcac gccgacattc ttagctgttt
     7621 ccggtgtaaa tttccccttc attgcgacat aacttactga gttttctaaa taagcattgg
     7681 taaaggcaac ctgtttttga cgcgcttcag taatatccat gcctgaaata attgcatcaa
     7741 aatttttaaa ttttaatccc gcaattaagc tatcgaatga ttgcgtttta aattcgcaag
     7801 ttgcttttag ttcttcacat aatgcttttg caatatctac atcaaagcca ataacttcac
     7861 ctttttcatt tgttgtttca aaaggggcgt aagaaggctc catcgcaaaa gtgatagttt
     7921 cttgtgcatt ggcagaaagc gttgcaaatg cgatagcgga agctaataat aattttttca
     7981 ttgttgtgtc cttttgttgt tatagattac tctgagtgag ataaatattg agcaaattgc
     8041 tctgttttcg gtgattcaaa acaacttgca tcaccttgtt caataattgt acctttttcc
     8101 atgtacacca ctttgcttgc caccttacga gcaacgccta cttcgtgagt cacaatcacc
     8161 tgagtaatgc ctgtagattg caattcttta ataatatcaa ctacttgtgc agtaatttcc
     8221 gggtcaagtg ctgcggtagg ttcatcaaat aataagacct gtggctgcat catcagtgct
     8281 ctggcaatcg ccacccgttg ttgctgacca cctgaaagat gcagtgggaa acgctcggca
     8341 aactcgctca aacgcaaacg tgccaaatgt ccttttgctc tggcaaccgc ttcttctttg
     8401 cttaacccaa gcactttcat cggggcttca attaagtttt gcattacggt taaatgcggc
     8461 cataaatgat actgctggaa caccattccc acctcacggc gtaacaaact caccgctttg
     8521 ctgtcggttt tagcagttaa atcaaattga tgatttgcaa tcgccaaagt gcctgattgc
     8581 ggtacttcca ttaagtttaa ggttcgaatt agggtacttt tacctgcccc actcgggcca
     8641 agcaatacaa cagtatcccc tttttcaatc tctaagttaa tgtcaaataa ggcttggttt
     8701 gagccataaa aaaaattgac attttgaata cgaattgcca ttcgttaaaa tcctactaca
     8761 tttaaaataa tgaatgaata ctaattattt ttgcataact atgcaatatt tttttctttt
     8821 agaacaaaat ttttgtaata aaatagcact tacatcgtct aacatcgtta aatggcgtaa
     8881 tttatttgga atatgaatac tgattacgct ataattttcg ccgagacaat taaaaatagg
     8941 atttcaatat gattagatac tttttttcac tcgtcttgag tttattgatg ataaactcat
     9001 ctcacgcaaa tcttttctct caacccaaat tcctaaaatc ggaagaagcc tttgtttttt
     9061 caatccaaaa tgaaaatgaa acattacagt taaattggga tattgcagac aattattatc
     9121 tttataaaaa agaaatccgt gtcacgccac agaatattga gataggcgac atcacttttc
     9181 ccgctgccga gcaatataac gatgaatttt tcgggcaggt ggaaatctat cgcaaccact
     9241 tagggctaaa ggtaccgttt aaagaaatta aagacaacgc ctcaatcgta gtggaatatc
     9301 aagggtgtac caaaggcttt tgctatccac cggaacgggt tgagcttaaa ttagacagta
     9361 ttctctctgc tacacctgaa gaactggcgc aactggaagc acaagcggtc gaaaagagcg
     9421 aaaattttgc aaaaaccgac aatatggcgc cccctgaaaa tgtggcaaaa gcagagcaag
     9481 atcaactggc tgaaaattta gctaacaatc gtttttccat tttttggttt tttgtattag
     9541 gcgttggatt agcattcact ccttgcgtac tgccgatgct accacttctc tctgcgattg
     9601 taattggaaa taagcaacgc ccttctaccg ctaaagcatt gctgttaagt attgcctatg
     9661 tgcaaggaat ggcagttact tacaccttac ttggcttaat tgtagcggct atcggcttgc
     9721 ctttccaaat cgccttacaa agcccaccgg tgttgattgg tttatctatc gtctttattc
     9781 tgcttgcctg ctcaatgttt ggcttatacg aaatccagct accaaatagc tggcaacaaa
     9841 aactcaatgc aatgagccaa aaacagcaag gtggtgcgtt gggtagcgtg tttttaatgg
     9901 ggatgatcgc aggcttaatt gcttcccctt gtacttctgc cccactttcc ggtgcgttgc
     9961 tttatgtggc acaaagtggc gatttagtca ccggtggctt agccctctat ctactcgcac
    10021 tgggaatggg cttaccgctg attttgatta ccttattcgg caacaaaatt ctgccaaaat
    10081 ccggcgaatg gctgttaaaa gtgaaagctg cattcggttt tgttatgctt gccttaccgg
    10141 tgttcttatt aagccgtgtg ctgccaagcc actatgaacc gtttttatgg tcggcccttg
    10201 cggttgcatt tttgatctgg ttggtggatg cgattccatc taattcaatc acgaaaaaga
    10261 tcatcaaagt cttattattg ctcgctttag ccattgccgc taaaccttgg gcagatttag
    10321 cttggaacgg ctcaaccact caacagcaaa ctacaccgca cttagcgtta gaaaaaattc
    10381 aatcacttgc cgatttagag acaaaattga ccgcttccaa aggtaaaaaa gtgatgctcg
    10441 atctctatgc cgactggtgt gtcgcctgca aagagtttga aaaatacacc tttagtgacc
    10501 aaaatgttca gaacaaactg aatgaaatgg tagtgttgca aatcgatatg acgaaaaact
    10561 cggctgaaaa tatcgagctg atgaaacact ttaatgtatt aggtttgcca acgattctgt
    10621 tttttgatga aaacggcaat gaaatgagcc aatctcgtgt tactggcttt ttggatgccg
    10681 agcaattttt agcttggctg aataagttat aaagaaaaga aatgaatcaa gaaaatcata
    10741 aaattgaaga cattattcgc atttttaatc aatgcttttc tgatgaatat aacactcgcc
    10801 tagagcgggg gggtaattat ccgatttact tgcccgaatt tatggacgaa gatggtgtgc
    10861 cgagcgaacg cccttacaat gtgattttat ttgctcacgg ctattacagc agtgccttgc
    10921 acgaaattgc ccattggctc gttgctggag aagctcggcg taaacttgaa gattttggct
    10981 attggtacga gccggacgga cgctctgccg aacgccaacg tgaatttgaa agtgcggaaa
    11041 tcaaaccgca agcgattgaa tgggtgttag caactgctgc cggttttcgt tattttgcta
    11101 gtgccgacaa tctctcgggc aatcccggcg ataattcagc ctttaaacaa gcagtgtacg
    11161 accaagtcaa gctctatgca gaacgtggct accttcccaa acgagctgaa accttgcgta
    11221 aagccctctg tgctttttac ggtacacctg atgtgattga tttagctcaa tttgatattg
    11281 aacgaattta gttgcaaaat ttttaacaaa acagaccgct tgttgcatat acaagcggtc
    11341 tcatttttga aaaatattgc atttgtacta aacgataccc tacttatcta tttctattgc
    11401 cttgattact tcctatccaa aaccctttgt ttcagagtac aactgtttct ttttttcata
    11461 ttttctatta tattagcgta caactgttca ctgaaataga aagtaaaaat aagattatga
    11521 gcactttaga ttttcacttt atccaccgtt tccaccagca agttcaggct cttagccacc
    11581 acccagcttt acgttttatg caagatgaaa aatggtcaga aataagttgg ttagaattac
    11641 aaaaacaggt caataatctt tcttatgcct tgctggcaaa cggtcttgcc gttcaagaga
    11701 aaatcgctat ttttgcacaa aatatgcctc gttggacaat taccgatatt gctgcaatgc
    11761 aaattcgtgc ggtagcagtg ccgatttatg caaccagtac caccaaacaa cttgaatata
    11821 tcctgaatga cggggatata aaaatcctct ttgttggcga tcaggaacaa tatgatcaag
    11881 ccatagaaat agcgaacaac tgttcgctat taataaaaat tgtcgcgatg aaagactcaa
    11941 tagatctgcg tgatttccct atcgctcaac attggcaaga tttcattaag gttaatcaag
    12001 atgaagctga attaaccaaa cgtttaaatg ataaatgctt agaggattta ttcactttaa
    12061 tttatacctc gggaacaacc ggtgagccta aaggtgttat gttagattat gctaatttag
    12121 ctcatcaact tcaggcacat aataaagcac tccctcatat tgacgaaaat gatatatccc
    12181 tttcattttt acctttatcg catatctttg aacgtgcttg ggtcacttat gtgctataca
    12241 gaggggcagt aaattgctat ctggaagatc ctcaacaggt acgtcaagca ctctcaacgg
    12301 tacgacctac attaatgtgt gccgtaccaa ggttctatga aaaaatctat actgcggtgt
    12361 gggataaagt ccaacaagca ccgatacatc gccgagcgtt atttaaatgg gcaatccgta
    12421 ccgccgaaga caatctgttt ggtaaaaaat cagccttttt ccaccgcttg cagtacatta
    12481 tggcagataa attggtgcta ggaaaattac gagccttact aggcggtcgt attcgtatga
    12541 tgccgtgtgg aggagctaaa ttagatccgt ctatcgggct atttttccaa agtataggca
    12601 tcaatgtaaa acttggatac ggaatgaccg aaactactgc cactatttca tgctggcagg
    12661 aaaaaggctt taatatcaac tcaaccggta ccttaatgcc tgatgttgag gtcaaaatta
    12721 gtgaagaaaa tgaaatttta gtgcgtggag gcttggttat gaaaggttac tacaaaaaac
    12781 cggaagccac tgctcaagcc tttactgctg aaggttttct aaaaacggga gatgccggtg
    12841 aactggattc ggaaggcaat ctttatatta ccgatcgtat taaagaatta atgaaaactt
    12901 caaacggtaa atatattgcc ccacaataca ttgaaggaaa aataggtaaa gataagttta
    12961 ttgagcaaat tgcggtgatt gctgatgcca aaaaatatgt ttctgcgttg atagttcctt
    13021 gctttgatag cctcgaagag tatgcaaaaa agctcaatat tcgctatcaa gacagattag
    13081 aactcattaa acattatgag gttgtcagaa tgtttgaaca acgcattaac gaattacaaa
    13141 aagaccttgc aagttttgaa cagatcaaaa agtttacact actttcgcaa gcatttagca
    13201 ccaaaatgga agaaattacg cctacattaa aattaagacg aaaggtcatt ctagaacgct
    13261 ataagcaaca aatcgaaaaa atgtacgaat cataatgaaa aacagagatc gtctttctgc
    13321 ttttcattta taccgcagcg gtaaccacaa tttcgacttt ccaatttgga ttggctaatt
    13381 tagcctccac cgccgctctt ggtggagcgt tatttggggc aacccattcg tcccacgcac
    13441 ggttcatttc cgcataatct gccatctctt ttaaataaac cgtagccatt agaattttac
    13501 ttttatcgct gttggctttt gccagccatt tatcaatttc tgcaagcact tgctgggttt
    13561 gggtgtaagc atcggcggtg tcatctaacg gcacttgccc tgccaagtaa gccacaccgt
    13621 tatgtattgc catttccgaa aaacggctac ctacttcaaa acgttgaatc atttttacct
    13681 ctactgtttt atacattgcc ctttataagc tttatgccct tttatttctt gcttgatatc
    13741 catttctttt tcatcaaaat cagtgatgat tagttccact gttttattat tatcactatc
    13801 agaaagtgag ctaaataaat tctcttcaaa ttgttgtagc tccgcatcac gttgtaattc
    13861 agaccatatt tgtgaacgat ggctacgctg tacagattct gagacgatac gataaacaat
    13921 agccccgttt ttcacactcc agcgcccatt ctgttgtaat gaatactcaa aaatcgactt
    13981 ttgaataggg taatatatac caccttgatt ggtcatagtc ccatttgtgg aaaatcgtaa
    14041 attatccacc gtacgaatat taaaatcatc gtactcaata gtgcattgcc attgcccaat
    14101 cagttgatta ggattagaaa ttgttgagga acaaccagct aatgcaagtg ctgataaacc
    14161 taaaaaaatt aactttttca tattctctaa ataaagacaa gcggttgaat ttgcaaaaag
    14221 ttttgccaat tcgaccgctt gttacttgtg taaaattact ctacttttac aatccagcct
    14281 tgcggtgctt caacatcgcc aaattgaata ccggttaatt ctgcgtataa acggcgggtg
    14341 acaggcccca cttcggtttc tgaatagaag acgtggaatt tgtctttatg ttgaatacca
    14401 ccaaccggcg taatcaccgc agccgtacca caagcaccgg cttcggcaaa ttggtctaac
    14461 tggtcgatat acacatctcc ctcaatcgct tccataccta aacgctcttg agcaaggtgt
    14521 agcaatgagt atttggtaat acttggcaaa atcgactctg aaatcggggt gatgaatttg
    14581 ttgtctttgg taatcccaaa gaagttcgcc gcccccactt cttcaatttt ggtatgggtt
    14641 ttcggatcta aataaatcgc atcggcaaat ttacgggtag ttgaactttg ctcaaccgcc
    14701 aattcgtgcg gtaataaact cgcagcgtag ttaccgccta ctttcacacc acctgttccc
    14761 attggggctg cacggtcata gtcggttgta atgaagtttg agggtgctaa gccacctttg
    14821 aaatatgccc ccaccggaca gcagaatacg gaaaaaataa attcaggtgc agctttcacc
    14881 ccaatatttt cgcccacgcc gattaaaaac ggacgtaaat aaagggttgc ccccgaaccg
    14941 taaggcccta accaatcttg attggctttt accacttttt tacaggcacg aataaacagc
    15001 tcggttggca cacgtggcat taataaacga tctgcggtgc gttgcatacg ctcggcattt
    15061 tgatccgggc ggaataagtt aattgagcca tctttacagc gataggcttt taacccctca
    15121 aaacattgtt gcccatagtg cagggcagtt gagccttcgt gaatatgcag tgtattgtct
    15181 tgagttaatt cgccttcatt ccattttccg tctttccaat gtgcaatgaa acggtaatcg
    15241 gttttgatat aagaaaagcc taaatttgcc caatctaact cttttaatgc catgttgtgt
    15301 ccttttattt ttatgttacg aaataatttt gacattctaa aacaaaatag ctcttgaggt
    15361 aagaagttta agcctaaatc gcaagaaaaa attaaggctc ttaaacataa gagccttaac
    15421 atactggttt gaaattatgc tgcgtgtttt gctgcggttt cttttaataa ggtttgaagt
    15481 tcgccttttt ggagcatttc taatacgatg tcacaaccgc caactaattc accttctacc
    15541 cataattgtg ggaaagtcgg ccagtttgca aattttggca attccgcacg aatatccgga
    15601 ttggttaaaa tatccacata accgaaaggc acttggcagt taattaccgc ttccaccgca
    15661 cgagcggaga aaccacaaga tgggaatttc ggtgaacctt tcatataaag tagaatcgga
    15721 ttttcgctga tttgttgttt gattttgtca atagtttcca tttttagcct caaaataata
    15781 atttaaaata gttgagtaat tatatcagaa ttaagttagc acagaaatag ctttaaatat
    15841 caatatcacg ccgtcctgca aaagagtgag aaagcgttgt gccatcaacc atttctaatg
    15901 aaccaccgac cggcacaccg tgagcaatac gagtagcttt cacgttatac attctgcaca
    15961 tttcagcaat gtagtttgcg gtagcatcac cttcaatggt cggattagtc gccaaaatca
    16021 cttcgtggaa agattcctgt tccaagcgtt gttgcaataa atctaagccg atttcacgag
    16081 ggcctatacc atcaatcggc gacaaatgcc ccatcagcac aaaataacgc cctgaaaatt
    16141 gcccggtttg ctcaatcgct tgaatgtctt ccggcatttc taccacacaa agttgcccgc
    16201 tcatctgacg gcgaggattt ttacaaatcg tacactcttc ctcttcggta aaagtacggc
    16261 acgatttgca atgtccgata tggctcattg cctcatttaa ggcttttgac aacgccacac
    16321 cgccggaacg attacgttgc aacagatggt aagccattcg ctgtgccgat ttcggtccga
    16381 caccgggcaa tgcacgcaag gcttccatca aattttcaag taaaggactg gtttgcatac
    16441 ttaaattaga atgggaattt catacccggc ggcagttgca taccggcagt cacacttgcc
    16501 attttctctt tttgcatttc ttctgcacgg cgaaccgcat cgttaaaggc agcggcaact
    16561 aaatcttcca ccatctcttt atcatcttcc attaatgatg gatcaatttc aattcggcgg
    16621 caattgtgag ccccgttaat agtgactttt accaaacccg caccagactc gcctgttact
    16681 tctaattggg cgatctcttc ttgcattttt tgcatacgct cttgcatttg ctgagcctgt
    16741 ttcattaagc cgcctaagcc accttttcca aacataattt ttcctcttaa ttttcaataa
    16801 aaaataaacg gcttattcta ctgaaccact ttctaatccg caagcggtta atttttccca
    16861 aaattttgca aatttgctaa aatggctact ctttttattc ctcgcacttt aactatggct
    16921 ttaacccgtt tattaatcaa ccattttaga aatatccaac ataccgattt agcatttagc
    16981 ccgcatttta attttttagt cggggcgaac ggaagtggca aaaccagttt gttggaatca
    17041 attttctatc ttggacacgg gcgttcattc aaaagccata tcagcaaccg cattatccat
    17101 tacgataaag acgatttcgt actacacggt aaaattgacg aggcaaagca cagttggtcg
    17161 gtcggcattc agaaatttcg cagtggcgag acgacactta aaatcaacgg tgaagacggc
    17221 aacaaaattg ccgatttagc ccatttattg ccgatgcaag tgatcacccc cgaaggctta
    17281 accttactta acggtggtcc gagctttcgc cgtgcttttt tggactgggg cttatttcac
    17341 cagcaccctg atttctacgc tcattggaac aatcttcgcc gtttattaaa gcaacgtaat
    17401 tcggctttgc aacaagtccg ctcttatcaa gaactcaaag cgtgggatat cgaattggtg
    17461 aaaaccactt atgccgtgag cgaaatgcga gccgaatacg ccgaagcgtt acgccccgaa
    17521 attgagaaaa cctgccaatt tttcctgccg gaaatcgaaa tcggcttgag ctttcatcaa
    17581 ggctgggaaa aaggggcgga ttatgccgag attctggcac aaggttttga gcgggataaa
    17641 gctcttggct atacgatgat tggagctcaa aaagccgatt tccgttttaa agcgaacggc
    17701 ttaccggtgg aagatgtgct ttcccgtggg caattaaagc tattgatgtg tgcgttaaga
    17761 ctggctcaag gcgaacattt ggtcgcccaa aaacaacgcc aatgcctatt tttaattgac
    17821 gattttgcct ccgaactcga cccaaccaaa cgtgagcttt tagcacatcg tttaagagaa
    17881 agtggctcac aagtattcgt taccgccatt actcaagatc agctcaatca aatgcaatgg
    17941 caagacagaa gcgatgattg tttgtttacg gtaaaaaatg gagaaattca gccacagtaa
    18001 gcggtcagat ttgggggcaa ttttacaaaa atgtttcttc cgatggcgcg agcgtccacg
    18061 ctcgtgccaa aacaagcgga taattttgca taaaaatttg caaaaaacag ctctttatta
    18121 accgcttgta gaatattaaa tagcactagc gtggacgcta gtgctatcag agcaaaacct
    18181 caacctacct ttactttctt gaatcgtgag cctgttggag caatactcta ctctctttca
    18241 agaactgctc ggaataatcg ccaaaccagt gatgcacttc ctcaaaagcc ttgataaaac
    18301 cggctttgtc gttgcgttta aagaaatcta gcccttgttc aaaactctct tttaaggttt
    18361 cgatggtggc taaattttcc ggtttatcgg caataatatc ggcatataag ctgccgtctt
    18421 gggcaaataa acgcccaatc attgccaact ctaagcggta aatcggcgaa gatagtgcca
    18481 ataattgaga gagttgcacc ggctggcgag aaagatgtag cccgaatgca aaagtggaaa
    18541 agtggcgtag ggcttgaatg taggtcattg cattatcgtg tgctgctgcc tcaatctctt
    18601 caatttttgc cccccaaatt ttgatttgct caagcaacca ttgataacgt tcagggaaac
    18661 gcccgtggca gcaagcgacc acttgctttg cctgacttgc aatatccggt ccgaacatcg
    18721 ggtgtaaacc gactaccgct ccattatgca cttccagcat tttttgcaac ggctgatgtt
    18781 tgacggaggt taaatccgcc aaaatcatat tttcggttaa ataagattgt aaacgctcga
    18841 tggttgctag ggtgttggca atcggcacac acacaataac cacatctgca ttggctaaaa
    18901 tctgctcggc attgtcccaa tcatcacgtc ctaatgcctc aacattatag ccggataggg
    18961 ttaaataatt gccaaacagc ccacctaatt tccctttacc accaacaatc acgatttttt
    19021 gaatgtccga attaactctt ttgaagccgt gtttgttttc attggcataa gattcacgca
    19081 ttatacggcg tagcacatct tcaatgagat ccgccggaat accttgtttt tccgcttcag
    19141 agcggcgggc ggaaatcatt gcggtttctc gctccggagc ataaacagga atgccgtgtt
    19201 ctgatttgac tttcccaact tctgccacaa gagctaagcg ttcagaaagt aaggcgataa
    19261 gttgttgatc aacttgatca atttgttctc gtaatggggc taatgggttc atatttgtta
    19321 ccaatttaca agcggtcgtt tttatgcaat tttttgcaaa ttatctttaa cgcaactttt
    19381 cagcaaagtg agttaaaagc tcttctgtag tttgccagtc aatacaagca tccgtaatag
    19441 aaacaccgta tttcatctgc tcgaacggca attctgatga ttgattacct gcgtgtaaat
    19501 tgctttcaat cattaaaccg ataatcgaag tattgccagc aagtagctgc tctaatacat
    19561 tttctgccac cagcggttgg cggcggtaat ctttattgga attgccgtgg ctgcaatcaa
    19621 tcataatcgc tgtaggtaag tttgcttgtt ttagcaccca ttcacaatca tcaacatatt
    19681 gcttttcata atttggggtt ttaccgccac gtaaaataat atgtccgtct gcattacctt
    19741 ttgttttgag taaagtaact tgcccctgtt ggttaatgcc gataaagcta tggctttgag
    19801 cggaagattg catcgcatta agtgcaacgg ctaaatcacc atctgtacca tttttaaagc
    19861 ctaccgccat tgacaaacct gaggctaatt cacggtgagt ttgagactca gttgttcttg
    19921 ctccaattgc cgaccagctg aacaaatccg ctaaatattg tggtgtcatc ggatctaagg
    19981 cttcggtcgc taacggcaag ccaagttcgg ctaaatccaa acagagtttt cgtgcgatac
    20041 gtaagccggt ttcgacatca aaagagccgt ccattttcgg atcgttaatc agccctttcc
    20101 aacctacagt agtgcggggc ttttcaaaat aaacccgcat cacaatatac aacttatcac
    20161 tcacttgctc cgaaagagct tttaattttt taccatattc aagggcagca actgggtcgt
    20221 gaatcgaaca aggtccaatc acaatcagtt ggcgtttatc tcgtctgtga ataatatcgg
    20281 aaatcgtttt gcgtgaacgt tcaatttgat tgcgtaaatg ttccggcaac ggaaattctt
    20341 gttttaactc ttgtggggtc agtaatacct tttcatcttg gatatttacg ttatgcacgc
    20401 tatcttgatt aaacactgtg ttcattttaa tttccttttg tgtaaatctt ttaatacaca
    20461 aactttacaa cgtaattttt aaagtttcaa ctactttttg tttcacactc tccaccgtga
    20521 ttttttccat ccaatttttg cctttagctt tagttgccca agctaattgc tgccaaggtt
    20581 taccataaga ttgcaaaatc gcttcatcat ataccgaaac cactttgtct aagtcattgt
    20641 aagggcctgt ccgtcttgga ttatgaatcg catacaaccc aatcaccggc gtattttgcg
    20701 tagtggcgat atgggcagga cctgaatctg aagagatcac caaatcaacc tgacgaataa
    20761 cacctgcaag ctgttttagc gtggttttac cggcaatact cgtacaattc ggggcaagtt
    20821 gttgaatttt ggctgcggtt tccatttcat attgcgatgg agaacctgca attaatacat
    20881 tgatattttg cttacttagc cagttagcaa tttctgcata gcgttccggc aaccaatctt
    20941 tctctttctt gcttgaacaa ggagcaatga gtatattttt ccttgtaaaa tcaataaatt
    21001 gtttgccata agctaaatct tcatcactca caggtaaatt ccattgtgcc gataaatcca
    21061 ttatcccaat ggctttggca aacatcattt gcccgtcaag cacgtgagga gagtctgtca
    21121 tttctacttt ctggttggta aacaaccatt gcatttccct tgctctgtct tgattaaagc
    21181 cgattttttt ctttgcttta atcccaagcg atagaattga agctcggaat gccgtttgta
    21241 aatttaataa aaaatcaaac cgcttgtgag aaagtttttg ccaaagtgta aagatacctt
    21301 tccaccctat ttttttatca taaggaatta agtgaacatt cggaatatct ttcattaaat
    21361 acgcttccgt tttgccgata atccaagtaa tttcagcact aggatatttt cgttgaatag
    21421 cttgaataac cgctaaggta tggcaaacgt cgccaatggc agaaaggcgg agaatacaga
    21481 tagaaagaag tttattgtgc ataataatat caatagttca gattacatta agctatatta
    21541 agacagaaaa aaagccacat aaagtgtttt atgtggcttt tgcgttaatc gtttagatta
    21601 ttcaactctt aagatacgac aagtatttgt accgccagct tttaattcat ctccgtgagt
    21661 taaaagcact aattcgccgg ttaataaata gccttgttct tttaattgag caatggcttt
    21721 tttcgcccct tccattgtgc ggctgtcttc attgtaatat accggtgtta caccacgata
    21781 taacgcacaa aggtttaatg ctttttggtt acgagacatc gcataaatcg gtaaacctga
    21841 gctgatacgg ctggttaatt tagccgtttc gcctgaatga gttaatgaaa taattgccga
    21901 tacaccttct aaatggtttg cggtgtacat tgcagacatt gccacagctt cttcgataga
    21961 tttaaacgta ccttccatac ggtggcgaga aatgttaatg cttggcattg tttcagcacc
    22021 taagcacact tctgccattg attttaccgt ttcaacaggg tagtcaccgt ttgcagtttc
    22081 gccggaaagc attaccgcat cagtaccatc taacacagca tttgcaacat ccatcacttc
    22141 agcacgggtc ggcattggtt ttttaatcat cgattccatc atttgggttg cggtaattac
    22201 cacacgattt agcttacgag cacggcggat taaacgtttt tgcacaccca ctaaagccgc
    22261 atcaccaatt tcaaccccta agtcaccacg agcaaccatc acaacgtccg cacctaaaat
    22321 gatgtcgtcc attgcttctt cagtcgcaac agtttcggca cgttcaacct tcgctacaat
    22381 tttcgcttct aagcctgctt cttttgctaa ttcacgtgca taatgtaaat ctgcacttga
    22441 ttgagggaat gaaaccgcta ggtaatccac accgattttc gccgctaatt taatgtcttc
    22501 tttatctttg tcggttaatg caggagctga taaaccacca cctaatttgt taatcccttt
    22561 attgtttgat aacgggccac caactgtcac ttcagtatga actttaacgc cttccacttc
    22621 caacactttc agttgaacat taccgtcatc taacaataga atatcaccag gtactacatc
    22681 atttggtaag tttttgtaat ctaaacctac agcttcttga tggccttctc cacgcggtaa
    22741 atctgcgtct aaggtgaatt tatcaccaat atttaagaaa attttaccgt ctttaaatgt
    22801 cgaaacacga attttaggac cttgcaaatc gcctaaaatc gcaacgtggc gacctaatct
    22861 tgcagcaatt tcacgcactt tattcgcacg ttcgatgtga tcttcaggaa taccgtgaga
    22921 gaaattcata cgaaccatat ttgcaccggc agcaatgatt ttttccaacg tattgccacg
    22981 atctgttgca ggtcccattg tacaaacgat cttcgttctt ctgagttttc tagacattat
    23041 ttgactccat caataaattt aaaaattaag ttaaaatctt tctaagcatc ttgattatgc
    23101 gttaaacgag ggtcattata cgcctaaatc aagagagttt aaatacaact aaaggagaat
    23161 gttatgaata tttggattat gcgccatggg gaagcaggct ttaatgcttc gagtgatgct
    23221 gctcgctgtt taaccgacaa tggtataaaa aacaccattt cacagggaaa atggttagga
    23281 gaacatttag ccaaccaaca aattcaatta gataaaattc tcgtcagccc ataccttagg
    23341 gcgcaacaaa cgcttgaaaa tgtgcttatt ggtatgcaag cggtcaattt tccccaacat
    23401 tttaccaacc tcattgaaag ttgggacgag gttacgcctg acggaaaccc gcatacagta
    23461 gaaagctatc tacatttttt aagagaggaa ggcgcaaaaa atattcttct gatttcacat
    23521 ctcccacttg tgttcgatct cgtccaaatt ttaacgaata accaaagcaa tgtacaattt
    23581 ccaacttcaa ccatagcaga aattaattgg gtaaagacaa aagctgagct aattcgagta
    23641 aagcatac
//
LOCUS       DANMGB010000015        23311 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.015, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000015 DANMGB010000000
VERSION     DANMGB010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23311
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.015"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            255..716
                     /gene="rimP"
                     /locus_tag="PXG19_000475"
     CDS             255..716
                     /gene="rimP"
                     /locus_tag="PXG19_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL6065807.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            737..2233
                     /gene="nusA"
                     /locus_tag="PXG19_000476"
     CDS             737..2233
                     /gene="nusA"
                     /locus_tag="PXG19_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL6065808.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            2218..4785
                     /gene="infB"
                     /locus_tag="PXG19_000477"
     CDS             2218..4785
                     /gene="infB"
                     /locus_tag="PXG19_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL6065809.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            4870..5250
                     /gene="rbfA"
                     /locus_tag="PXG19_000478"
     CDS             4870..5250
                     /gene="rbfA"
                     /locus_tag="PXG19_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL6065810.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            5253..6176
                     /gene="truB"
                     /locus_tag="PXG19_000479"
     CDS             5253..6176
                     /gene="truB"
                     /locus_tag="PXG19_000479"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL6065811.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            6179..7259
                     /locus_tag="PXG19_000480"
                     /pseudo
     CDS             6179..7259
                     /locus_tag="PXG19_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(7297..7821)
                     /gene="tadA"
                     /locus_tag="PXG19_000481"
     CDS             complement(7297..7821)
                     /gene="tadA"
                     /locus_tag="PXG19_000481"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL6065812.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(7903..9711)
                     /locus_tag="PXG19_000482"
     CDS             complement(7903..9711)
                     /locus_tag="PXG19_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL6065813.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(9913..10836)
                     /gene="nlpI"
                     /locus_tag="PXG19_000483"
     CDS             complement(9913..10836)
                     /gene="nlpI"
                     /locus_tag="PXG19_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL6065814.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(10917..13067)
                     /gene="pnp"
                     /locus_tag="PXG19_000484"
     CDS             complement(10917..13067)
                     /gene="pnp"
                     /locus_tag="PXG19_000484"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL6065815.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(13329..14609)
                     /gene="phoR"
                     /locus_tag="PXG19_000485"
     CDS             complement(13329..14609)
                     /gene="phoR"
                     /locus_tag="PXG19_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL6065816.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(14612..15298)
                     /gene="phoB"
                     /locus_tag="PXG19_000486"
     CDS             complement(14612..15298)
                     /gene="phoB"
                     /locus_tag="PXG19_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL6065817.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(15382..16152)
                     /gene="pstB"
                     /locus_tag="PXG19_000487"
     CDS             complement(15382..16152)
                     /gene="pstB"
                     /locus_tag="PXG19_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL6065818.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(16162..17010)
                     /gene="pstA"
                     /locus_tag="PXG19_000488"
     CDS             complement(16162..17010)
                     /gene="pstA"
                     /locus_tag="PXG19_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL6065819.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(17007..17966)
                     /gene="pstC"
                     /locus_tag="PXG19_000489"
     CDS             complement(17007..17966)
                     /gene="pstC"
                     /locus_tag="PXG19_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL6065820.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(18047..19084)
                     /gene="pstS"
                     /locus_tag="PXG19_000490"
     CDS             complement(18047..19084)
                     /gene="pstS"
                     /locus_tag="PXG19_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL6065821.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            19269..21515
                     /gene="parC"
                     /locus_tag="PXG19_000491"
     CDS             19269..21515
                     /gene="parC"
                     /locus_tag="PXG19_000491"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL6065822.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(21586..22938)
                     /gene="lysC"
                     /locus_tag="PXG19_000492"
     CDS             complement(21586..22938)
                     /gene="lysC"
                     /locus_tag="PXG19_000492"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL6065823.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
BASE COUNT         6806 a         4743 c         5249 g         6513 t
ORIGIN      
        1 gttggttcaa atccggcccc cgcaaccagt tttaagctca cagctttggt taaagttgtg
       61 agttttgttt tatatgctgt agcaaatttg caaaaaattt ggcaaaaaag accgcttgtt
      121 gtggttgcta cagcaaaaaa caaaccgctt aaagccccac ggtttcccgt ctggggcttt
      181 tttgcggaaa ttggtacagc attaacgtat caaagctggt ttatccggct ttttttatat
      241 ttggagatta tgacttggca actttagaac aaaaattaga agatttagtg ctcgattcta
      301 ttgaagcatt aggctttgaa ttagtcggca ttgaatgcca acgtgcaggc cgttttttaa
      361 cggtgcgttt atatattgat aaagaaggtg gcgtgacgat tgatgattgt agcgatgtca
      421 gccgccaagt gagtgcgatt tttgatgtgg aagatccgat tgccgataaa tataacttag
      481 aggtttcttc accagggtta gatcgtccat tatttaccgt tgcccactat gagcgtttta
      541 tcgggcaaga tgtagtgatt catttacgca ttccgatgtt cgatcgccgt aaatggcaag
      601 gtaaaatcaa acaagtagaa ggtgatttca tcactttaac ggtagaaaat gaagatcgcc
      661 agttcgcatt tggcaatatt caaaaagcaa atttagttcc ggtttttaat ttttaagata
      721 aaggtaaact gacaaaatga gtaaagagat tttattagct gcggaagcag tttcaaacga
      781 aaagcaatta ccaaaagagg caatttttga agccttagaa accgctttaa ccattgcaac
      841 caaaaagagc cgtgatttag atattgacgt gcgtgtggtg gtagatcgta aaaccggtga
      901 tttccaaact ttccgtcgtt gggctgtggt tgaaaatgtg aataatatga cccgtgaaat
      961 cagcttagaa gcggcacaat ttgaagatcc aaacgtacaa ttaggcgatt ttattgaaga
     1021 tgaagtagag tctatcgagt tcggtcgtgt ggcgattcag acttttggtc aggtagtcaa
     1081 aaccaaaatt cgtgaagcgg agaagacgaa aatcattgat gaattccgtt cggatttagg
     1141 caaaattatt cttgccactg tgaaaaaagt aacccgtgat aatattttcc ttgagttaca
     1201 aggtaaatca gaagatatca aaggcgaagc ggtcattgtg cgtgaagata tgatcccacg
     1261 tgaaaacttc cgcccgggtg accgtgtgcg tggtgtgtta tacgaaatca agcctgaatc
     1321 aaaaggacct cagcttttcg ttacccgtgc taaaccggtg atgttagaag agctattcaa
     1381 attggaagtg cctgaaattg gcgaaggcgt aattgagatc aaaggttcag cccgtgatgt
     1441 cggctctcgt gcaaaaattg ccgtgaaaac ccacgataaa cgtattgacc cggtaggggc
     1501 ttgtgtgggt atgcgtggtg ctcgtgttca agctatcagc aatgaattag gcggcgagcg
     1561 tgtggatatc gtactttggg acgaaaatcc ggctcaattt gtgattaatg caatggctcc
     1621 ggcagatgta agctctattg tgattaacga tgaaactcac tcaatggata ttgcggttga
     1681 agcgaaaaat ctggctcaag ctatcggtcg taacggtcaa aacgtgcgtt tggcgacaca
     1741 attaactggt tgggcattaa atgtaatgac cgttgaagag ctaacgaaga agagcgaaga
     1801 agaagatggt aaagtcatca atttattaac ttctgcttta gaaattgatg aagaatttgc
     1861 tcaagtttta attgaagagg gctttacgtc tcttgaagcg attgcttatg tgccggttga
     1921 tactttaacg gcgattgacg gtttagaaga tgaagattta gtcgaagaat tacaatctcg
     1981 tgccaaaaat gcgatcacga aaaaagcgtt agaagaagag aagttattaa aatcagctca
     2041 aattgaagaa aaattattaa cgcttgaagg tatggatcgc catatcgcat tcaaattagc
     2101 tgaaaaacag attacgactc ttgaagaact tgcagagcaa ggtgttgatg atttagccga
     2161 tattgaagaa ctttcagaag agaaagctgg cgagctaatt atggcagcac gccaaatttg
     2221 ttggttcaac taagcaaaga ggataataaa atgacagaag agaaaaaaac actttcgctt
     2281 ggtggcgctc gcaaagcgag taaagtgaat acaaccacaa ccagtggtaa agtaaaagcg
     2341 gttgaagtaa aagagaaaaa accgaaaatt gatgcaaaag cattgcaaga aaaagcagca
     2401 aaagaagctg ccgcagcgaa agctagagct gaaaaagaag cagctgaaaa gttagccaaa
     2461 gaaaaagccg aagctgaagc taaagagaaa gctgcaaaaa aagcagcaga atcgaccgct
     2521 agtaaaccga tttctgtgcc ggtaatgcca agcagcaaag caaaagaaga aaaaccgaaa
     2581 gcacaacagg tacagccaaa acaagagaaa gcggttgatc ctgaaaaaga agctaaacgc
     2641 aaagaagaag ctgagttacg ccgtaagcaa gaggaattag ctcagcaaaa agcggaaatg
     2701 gaggcaaaac gtgctgcaga aaatgcccgc cgtttagcag aaattgctcg tgaagaagcg
     2761 gaagataacg gcaacgaaga ttttgatgat gagcgtttta cttcttctta tgctagagag
     2821 gctgagcgtg ataatgaccg ccgtagtgag ggaaatcgtg gtcgtaacgg caaaggcaat
     2881 gtggctaaag cgaaaaaagg cggacgtgaa gaggataaaa acgaacgcag tgcagatcgt
     2941 cgcaaccata aagaagtaaa aggcaaaggt aaacaaggta agaaaggtgc agctttacaa
     3001 caagccttta ccaaaccagc tcaagttgtt aaagctgatg tggtgattgg tgaaactatc
     3061 actgtggctg aattggctaa taaaatggca gtgaaagcga ctgaaatcat caaaatgatg
     3121 atgaaaatgg gtgaaatggt gacgatcaac caagttatcg accaagaaac cgcacaatta
     3181 gtggcggaag aacttgggca taaagtgatt ttgcgtaaag aaaatgagtt agaagaagcg
     3241 gttttagaag atcgtgatac tcacgcagaa aaagtaaccc gtgcaccggt agtgactatt
     3301 atgggccacg ttgaccacgg taaaacctcg ttacttgact acattcgtaa agccaaagtg
     3361 gcggcaggtg aagcaggtgg tattacccag cacattggtg cataccacgt tgaaaccgat
     3421 gacggcaaga tgatcacttt cttagatacc ccggggcatg cagcctttac ctcaatgcgt
     3481 gcgcgtggtg cgaaagcaac tgacatcgtt gttctcgtcg ttgcggctga tgacggtgta
     3541 atgccacaaa ctattgaagc tatccagcac gccaaagcag cgggtgcgcc attagtggta
     3601 gcggtgaata aaattgataa accggaagcg aaccctgacc gtgtagaaca agagttacta
     3661 caacacgagg ttatttctga gaaattcggt ggcgatgtgc aattcgtgcc ggtatctgcg
     3721 aaaaaaggta tggggatcga tgatttacta gaagccatta ttctgcaatc cgaagtgctt
     3781 gaattaaccg cagtaaaaga cggtatggca agcggcgtgg taatcgaatc ttacttagat
     3841 aaaggtcgtg gccctgtggc aactatcttg gttcaatccg gtacgctaaa caaaggcgac
     3901 attgttctat gtggttttga atacggacgt gtgcgtgcaa tgcgtgatga aaacggtaaa
     3961 gatgttgaat cagcaggtcc gtctattccg gtagaagtat taggcttatc aggcgtgcct
     4021 gctgccggtg atgaggcaac cgtcgtgcgt gatgagaaga aagcccgaga agtggctctt
     4081 tatcgccaag gtaaattccg tgaagtaaaa ctggctcgtc agcaaaaagc taaactggaa
     4141 aatatgttca gtaatatggc agccggtgat gtggcagaat tgaacatcat tgttaaagca
     4201 gacgtacaag gctcggtaga agcgatcagc caatccttaa tggaactttc aaccgatgag
     4261 gtgaaagtga aaattgttgg ttcaggtgta ggtggtatta ccgaaactga tgcaacctta
     4321 gccgcagctt ctaatgctat tatggtcggc tttaacgtgc gtgccgatgc ctctgcccgc
     4381 cgtgtgattg aaaacgaaaa tatcgattta cgttactact ccatcattta tgagctatta
     4441 aatgacgtga aagcagcaat gagcggtatg ttacagcctg aattcaaaca agaaattatc
     4501 ggcttggcag aagtgcgcga tgtgttccgc cacccgaaat ttggggcgat tgccggttgt
     4561 atggtgacag aaggtatcgt taaacgtaac aacccaatcc gtgttctgcg tgataacgta
     4621 gtaatttttg aaggcgagtt agaatctctc cgccgtttca aagatgacgt atctgaggtg
     4681 cgtaacggta tggaatgtgg tatcggcgtt aaaaactaca acgacgtaaa agttggcgac
     4741 caaatcgaag tgtttgaagt ggttgaagta aaacgtacta tttagcctaa ttttgtgtag
     4801 gggcgtattg catacgccct ttgtattttt tagggcgtga agcatcacgc ccctataaaa
     4861 gagaaaaata tgtccagaga atttaaacgt agtgaccgtg tggcacagga gctacaaaaa
     4921 gaagtggcgg tgattttaca acgtgaggta aaagatcctc gcattggtat ggtgactgtt
     4981 tctgatgtgg aagtatcaag agatttggcg tatgccaaaa tttttgtgac tttcttattt
     5041 gataacgatg ctgaagctat taagcaaggt atgcaaggct tggagaaagc aagcccctat
     5101 attcgaaccc ttttaggtaa agcaatgcgt ttgcgtattg tgcctgaact gcgttttatc
     5161 tacgatgaat cgctagtcga aggtatgcgt atgtctaacc ttgtgtctag tgtaatcaaa
     5221 aatgacgaag aaaaacataa agaggactaa ttgtgtctag acctcgcaaa cgtggccgtg
     5281 atattcacgg cgttttctta ttagataaac cacaaggaat gtcttcaaac gatattctgc
     5341 aaaaggtaaa gcgaattttc caagcaaata aagccggaca taccggggcg ttagaccctc
     5401 tcgcaaccgg aatgctgccg atctgtttag gtgaagcgac caaattttcg caatttttgt
     5461 tggattcgga taaacgttat ctcgtcaccg caaaattagg cgagcgaacc gatacttcag
     5521 atgcggaagg gcaagtggtg gaaaccaaag cagttgcagt gacaaaatct caaattttgg
     5581 ctgctttgga gaaatttaga ggtgatattt tgcaagtgcc gacaatgttt tcggccttaa
     5641 aacacaacgg caaacccttg tatgaatatg cccgagcagg gattacggtg gagcgtgagg
     5701 ctcgcccgat tacgattttt gaactaaatt tcattgaata caaggctcca tttttaaccc
     5761 ttgaggtgca ttgttctaaa ggtacttata tccgaacttt ggtcgatgat ttaggcgaag
     5821 agttgggctg tggtgcacac gttacgatgc tacgccgtac agcagtggca gattatccga
     5881 ttgaaaaaat gatgagctat gcagatttgc aaaatttagc cgaaaatcaa ccgcttgcag
     5941 agttagacca gcacttattg ccgatggata cggcagtttc tgcattagca aaaataaatt
     6001 taagttcaga gcaaactaaa gcggtgggtt ttggtcagag aattagattt gataatctga
     6061 accaacttta tggtttggta cgtttatatt cagaagatga acaatttctc ggtgtggcag
     6121 aaatcaccaa tgatactgtg attcgtccta accgaatgat taacttaacg gaataagaat
     6181 gaaatcgata atttttacct tacctttagc gattatcact ttagccttag ccggttgttc
     6241 aagtgataat caagaaagtt atgccggctt aaacttagat gctaaataca gtaaatctcg
     6301 ctcggtcagt cattttaatg attatgtgca ttttctgaaa cagaaggcag caggggcagg
     6361 agtgtctgca aaaaccttaa atgctcagaa attcattcat tacaacgcca gagcggtgca
     6421 gttagatcaa cagcaagctg cacgaagacg tgacccgaat gtaccgcctc cgccaccaaa
     6481 tccaagtttt aaacaaagta ttaactcaag cgaaggtgga tcaggcaagt gaacgttggt
     6541 atgaatataa tagccagctt acccatgcca gccaaaaata tggggtacaa aaagagtata
     6601 ttttggcact ttggggaatg gagagcagct ttgggcgtaa ccaaggggat tttgatgtac
     6661 tttcggtgtt ggcaaccctc gcctttgatg gtcgccgtga gaagttattt acgcaagaat
     6721 ttgtgaatgc gatgaaaatg ctcgatgacg gcacaattaa acgctatgaa ttgcttggat
     6781 cttgggcagg agcgatggga caaactcaat ttatgccaac ttcttactta acctatgcag
     6841 ctgatggcaa taatgacggt aaaaaagata tttgggagaa tgaagccgat gcatttgcct
     6901 cgattgccaa ttatctttca acagtaggtt gggataatca actaccttgg ggtgttgagg
     6961 ttaaattagc ttcaccgatg gatttaagtt tcgccggtct tgaaaccaac aaagcgaaaa
     7021 cattggcgga atggcaagcc ttaggtattt atttagctta tccgaatgga caagaatcgg
     7081 caaaattagc tcaattacac ggcaaagagg tttggttgat tcgtccggat aaagaagcgg
     7141 gaagagcgtt tttagtttct aataatttcc gtactttaat ggattggaat aaatcgaata
     7201 accttggtat cagtatcgga aaatttgccg atcgaatttt agcttcagtt ggtcaataat
     7261 cgaataaaag catagtagca aagcctatct atgcttttat tttatcaaag cgtcgccttt
     7321 cttctgcaaa cgacgttgct taaaaaaatc actgatcttt tggctacatt ctctgcccaa
     7381 tacattgcca tgcacttcta agaaatggtt cattttataa tcttcaaaca gatgatagcg
     7441 tgaacctacc gcacctgttt tataatcact tgccccaaaa accaatcgct taatccgact
     7501 atgtaaaatt gcaccggcac acattgggca aggctcgagc gtaacataaa gggtacaatc
     7561 taacagacgg taattcccta aagtttgtcc tgcttgacga attgcctgca tttcagcgtg
     7621 tgcagatgga tcacagagtt gaatggtttg gttccagcct ctgccgataa tctgttggtt
     7681 tttatcaacc agtactgccc caaccgggat ttcgcctttt gcttcggcta aatcagcgag
     7741 atcaagggcg tattgcataa aggcgatgtc ttgctcggag atctgaagtg gacaagaagt
     7801 ttgatttggt ttgataaaca tagttgcaaa aaattgagtt tttttgaccg cttgtaaaat
     7861 gccccacgag ggtggggcat cgcttacttc gcttagtgtc gtttagtcac gacgaccacg
     7921 tttttcactg aaacgttttt ctttaaagcc acctttgcgg tctttattga aacccccgtc
     7981 tcggcgacca ccacgatcat tacgatcgtt accacggcga ccacgacctt caaatggatt
     8041 tgcattactt gcactgtttg cagagccaag taatgtcatc tgcattggtt tgcttaatac
     8101 acgtgctttg tgagcgaaat gttgtacgag atgatttggc attccttgcg gcaactcaat
     8161 ggttgagtat ttatcataaa gtttgatatg cccgatgtaa cggctgctga tatccccctc
     8221 gttggcaatc gctccaacaa tatgacgaac ttccacaccg tcttcacgcc ccaattcaat
     8281 gcggtataaa tccattgcca caccattgtt ttcacggtgt tcacgaccgt tacgacgatc
     8341 gtttcgctca ttgcggtcac gtccacgttc agaacgggca gcacgcacaa ccggatccgg
     8401 tggcagaatc agtttttgtt tttcttgcag taacatcatc atcgccgctg ctaattcttc
     8461 gtggtcttga tccgcagtaa ataaatcttc caacaattca cgatattttt ctaaatcgtg
     8521 atgttctaac tgcttagaaa tgcgggcttt gaatttctca cggcgttttt ccattaaaat
     8581 ttcgtggttt ggaatcgcca cttcattaat tggttttttg attaaatttt cgatattgcg
     8641 taataagcgg cgttcacgag gctcaacaaa cagtaaggca cgacctgaac gaccggcacg
     8701 accggtacgt ccgatgcggt gaacataaga ttcttcttct aacggaatat cgtagttaat
     8761 aaccaagctg attcgctcaa tatcaatacc acgggcagca acatcggtgg cgactaaaat
     8821 atctaaacga ccggagcgta atttatctaa ggtttgctca cgggcttgct gggtcatatc
     8881 gccgtttaat gccgcagtac ggtagccgtt gcgttcacac aattcggtaa tatcaatagt
     8941 accggttttg gtgcgggtaa agatgatagc agcatcaaat tcttctactt ctaggaaacg
     9001 caataacgca tcgtttttac ggaagccgtt taccagccag tagctttgtt caatatccgg
     9061 ggctgaacgc tcggttgcct taatttttac ctcttgcgga tctttcataa aacgacgggt
     9121 aatacggcga atcggctccg gcatggtggc agagaagaga gcagtttgat gtgtttccgg
     9181 taattcagcc attaccgttt caacatcgtc aataaagccc atacgcagca tttcatcggc
     9241 ttcatctaac acgatgaatt ttaattcgga taaatctaat gtgccacggc ggatatggtc
     9301 aagaatacgc ccaggtgtac ccactactac ttgtgagcct tgttttaaag cacgtaattg
     9361 aatgtcgtaa cgttgtccac cataaaccgt cactacacga atgcctttca tattttttgc
     9421 aaactgctca caagcatcgg ctacttgaat cgcaagctca cgggtgggtg ccatcaccaa
     9481 catttgcggg tggcgttgtg ttgggtcaat ttgtgccaac agcggcagcg agaatgcggc
     9541 ggttttaccg ctcccggttt gtgccatacc aagcacatca cgaccggcta ataaatgagg
     9601 aatacattct tgttgaatgg gtgatgggtt tacaaagccc atttcattta cagcatcaag
     9661 gattggttga ggtaagccta aatcggcgaa agttaaagat tcagttgtca taaaaaacca
     9721 tttgtttgga acgcacaaag cagaaaatat cgactatttt tctgcacagc cattaatgaa
     9781 aattatattg ttgaaattta ggaagaaatg aaataacaaa gcaagtgatg ctttaaaaat
     9841 cccctgagta taagcggtta aatttacaaa attttttgcg aaattaaccg cttgtattgt
     9901 cctaatcttt ccctattctt tatcaacaac gggagtcgtt tgagtcatac cacgaatttg
     9961 tgataactca aacagggcaa aacgatactc aacgaagtta aacacttgat ttgcaagagc
    10021 aagacgaaag aggctgattg cctcatcttt atgatctaat ttgagttgtt gttttgctaa
    10081 gtagaaatac gtttctgtca gtatttctgc atattgtgag ctattttcct tagcgtcacg
    10141 ttccattata gcacgaactt gagctaaatt gagcttccct aaaaaataat ttacgatatt
    10201 tgttccccag taatccgaag aaagattatt agctcgcttt tgtaaattat ttttagcttc
    10261 tgttggtgta aattccagct cattaaaata gagccataat gctcgataag gatctttctt
    10321 atcttcttca taaaaatgga gaagatcacg ctgggcttca gaatatctgc cgctataata
    10381 gaaagccaaa cctcgattga gataggtgta gctatattcc cgatctaatt ccaatacggc
    10441 attaaacgca tcaatcgaac tgtcgtaatc gccttccagc agcagataca gccccatata
    10501 gttataagct gccgccatac gttgattgag cgaaatggct tgagcaaaat cataacgggc
    10561 taacgaccat aaacctaaac tgtcgtaaat aacgcctctt tcaaaataga ggtctgcttg
    10621 ctcagagggc gttaatgggg cttcttccaa tacttggctg agtcttacca ccattgcctc
    10681 ttgttcaaag cgaagttgag gattaagttc tgccaatgct aagtttttaa ttgaaaccaa
    10741 atcggcatac cgactggtac agccgcttag cattaaaaca gaaattaaat tcagtaataa
    10801 gaaacggatt cgaaacaact taaaaagttg taccattaca gcatatccct caattaagga
    10861 aaattaaaaa ctgaataacg gacactcaaa gtccgttatt cgcctttatt attgaactag
    10921 aaattatttt cttgttctgt ttctaccaca ttttcagcta cagtttcttc tgcatttgcc
    10981 tcgttggtat tattgatgtc tttcatcgtc agacgaatgc gtccttgacg gtcaatttct
    11041 accactttca cttgtacttc ttgaccaacg gttaagtagt ccgctacacg ctcaacacgt
    11101 tcgttggtga tttgtgaaat gtggactaaa ccttctttgc cacctaagat ggaaacgaat
    11161 gcaccgaagt ccaccacacg ggttacttta ccgttgtaga tttggtttac ttccacttcg
    11221 gcaacgatct cttcaatacg agccattact gctttcgctg cattgccgtc agttgccgca
    11281 attttcaccg taccgtcatc atcaatgtcg atagaagtat tggtctcttc ggttaaagca
    11341 cgaattgttg caccgccttt accaatcaca tctttgattt tcttcggatc gatcttcatt
    11401 gtgtgaatgc gtggggcata gtcagaaata tctgcacgag gtgccggaat ggcttgttcc
    11461 attacaccta aaatgtgcat tcttgcacct ttagcttggt ttaaggcaat acgcataatt
    11521 tcaggggtga tcccttcgat tttgatgtcc atttgcagcg cagtcacacc ggtacgggtt
    11581 cccgctactt taaagtccat atcgcctaag tggtcttcat cacctaagat gtcagaaagt
    11641 accacgaatt tctcgtcttc tttcacgagc cccattgcga taccggcaac cgctgctttg
    11701 attggcacac ctgcgtccat caacgcaaga gacgcaccac acacagatgc cattgaagaa
    11761 gaaccgttag attcagtgat ttcagacacc acacgcacta catacgggaa ctcttcagcg
    11821 gttggcatca cggctaatac gccacgtttt gctaaacgac cgtgaccgat ttcacggcgt
    11881 tttggcgagc cgatacgacc ggtttcgccc acagagtatg gagggaaatt gtagtggaat
    11941 aagaaacggt cagatttttc gccggtcaat tcgtcaatga tttgggcatc acgctctgtg
    12001 cccaatgttg ctactgctaa tgcttgggtt tcgccacggg tgaaaagagc agaaccgtgg
    12061 gtgcgtggta acacactggt gcaaatatcc aatgcacgca cggtatccac cgtacggccg
    12121 tcaatgcgtg gttcgcctgc aataatacgg ctacgcacga tttggctctc taatgcggtg
    12181 atgatgtcga tgatagtccc ttcagaaaca gtttcatctt ctgcggtaag ttgtgcaatc
    12241 acctctgctt taatcgcatc gatttgctcg taacgaactt gtttttctac gatacgataa
    12301 gcatcgccaa ggcgtgtttc tgctaatgct tttactttgt tgattaaatc tgtatttggc
    12361 tctggtgcaa cccaatccca acgtggtttg cccgcttctt taacaaattc tttgatgttt
    12421 tcgattacaa cctgttgttg ctcgtggccg aacaccaccg ccgctaacat ttgctcttcg
    12481 gttaagatat ccgcttcaga ttccaccatc aacacggctt tgtctgtacc tgaaaccact
    12541 aaatctaagc ggctgatttt ttgctcgctg gtggttgggt ttaatacgaa ttgatcgttg
    12601 ataaaaccga cacgagccgc accgattgga ccgttaaacg gcacgccgga taatgaaagg
    12661 gcagccgatg caccgatcat cgcaaccaga tcaggactga tttgtgggtt taccgatact
    12721 acggtcgcaa tcacttgaat ttcgttaaag aaaccttctg ggaaaagtgg acgcacagga
    12781 cggtcgatca agcgagcgat taaggtttca ccttcgctag gacgtccttc acgtttgaag
    12841 aaaccgcccg gaatacgacc ggctgcgtaa gtacgctctt gataatctac ggttaatggg
    12901 aagaaatctt gcccttcttt tacgtctttt ttcgctacta cggtaacaaa tacggttgtg
    12961 tcgtccatac ttgccattac tgctgccgtt gcttggcgtg cgatagcacc ggtttctaag
    13021 gtcacggtgt gctgaccgta tttaaactgt tttacaattg gagtcattga aattttcctt
    13081 ttaaagaatt tactattatt gtcgttttat ttctctaaat tgcgactagc aaaaaggctt
    13141 ttaagtaaaa catttttgat agccgcctct caataacaag aaataaaact tgtctagtat
    13201 agcgtgattt ttataaaaaa tcgcctatta ttttgatctt gcacctcagt tataaagaaa
    13261 ttcaaaactt cagtgtaaaa tggggattag tttgtgaaaa gccttgtgaa aatagtttga
    13321 ttgcatcgct atttttttat tagaggtagt ttaaaactaa atctgcttcc tttaccggct
    13381 tcactttcaa tttccagtgt ggaatggtgc tgttcaagag cgtgtttgac aatagccaga
    13441 cctaaaccgc taccgccggt tttgttgcta cgagattcgt ccacacgata gaaacgttct
    13501 gtcagatggg taatatgatg ggcatcgata ccaataccgt catcttgcac gctgaaaatc
    13561 gcagtattcg gctcttgatt atcacgttga caacatattt gaatggtaac tccttcaccg
    13621 gcgtgccgta ttgcattgta aattaaattt gatacagcgc tttggagttg ctcttgatct
    13681 ccccataccg ttaaattagg ctcaatatca aacagtattt gctgattttg gcttaaaatc
    13741 tcggtatttt tttgtatggc ggagattaac gccgacatct ggacctcatt gtgttcggaa
    13801 tcattggaat gctcgatttt aaccaaaagt gagagttggc gaagcaggtt agtcatacgt
    13861 tgactttgct ctttcatcgc attgagcgct ttttgctgta atgccatatt atgcggctcg
    13921 ttttccagca tttccaaata accttgtaat atggtaagag gtgttcgcag ttcgtggttc
    13981 atatttgcca aaaaggtttg tcgtgagtgc ataaggcgga caaaagaggt tacatctcgt
    14041 gcgacaataa gtctggagtt actgtcatat cgattgagat tcaattcaat atagcgttta
    14101 ttatgagtca gcagtaccaa tgggcgatgg tgtcgttgtt ggcggaaata gcttttaaat
    14161 tcaggataaa aaatcacatt aaaaatgctt ttatttgatt ttttgtccca ataaaactca
    14221 aatagctctt gtgcaacatt attgcaccaa gaaatctccc cgttttcttg gcaaataatg
    14281 atcgcatcgg gtaagtattg aatatgctta tttaattttg ataacagacg taaggttttg
    14341 attttatctt ggcgtaaacg ttcgtgatag aatgcggcac tttgagataa atgctccatt
    14401 gtcgttactt ttgacctgcc gctttgctca ttaggtctga gtaactgaag gagagaagat
    14461 tcggtgtggt gatgccaaat aagtagaacc agtaaacaaa aactaaacca gaaaaaataa
    14521 gcagggaaaa acagattgaa tacgccggca acggctgctg ccagcaaaag ttccaataaa
    14581 aagtgtttaa gtgagagctt aactttcatt attagtcctg aaaatggttg gaaaaacggt
    14641 atcccgagcc acgtacggtt tgaatataac gctcaaaacc atagggttca agactcttac
    14701 gcaatcgccg aatataagag tctaccgtgc gatcctcaac ataaatatca ttaccccaaa
    14761 taaaatcaag caactgttca cgacgataca ctttttcagg gtgagtcatt aaaaagtgaa
    14821 gcagtttata ttccgtgccg cttaatttca cttcctgttc ggcaaccaaa acccgttgtg
    14881 cctgttgatc aagaatcaat ccgtctatat tgatgagatt gcttggcgga tcatagcttc
    14941 gccgccatac tgcttcaatc cgggcaagca acacctgtgg tgaaaacggt ttggtaatgt
    15001 agtcgtctgc accggcattc agaccggtaa tacagtcttc ttcgctactg cgggctgtta
    15061 gcataatgat tggaattttt tcggtttcag gctgtttttt taggtattta attaaatgga
    15121 tacccgaacg ccccggcatc atccaatcca gtaaaataag ctcgggtttt tcgcccagtt
    15181 tattgatagc actttggtag tcttccgctt caattacctg atattgtttg ctgagataga
    15241 gacttagcat ttcacgaata gcacgttcgt cttcaacgat cagaattttg ttattcattc
    15301 ttcctctccg atgcggtgtg acaagcggtc gatttatcgc agaaatttgc aaatttttta
    15361 ctaaaaccga ccgcttgcag attaccccat tttaccttta atgtaatctt ccgtctgccg
    15421 gaattttggt ttgtcgaaaa tttgtttggt atcaccgaat tcaatcagct cgcctagata
    15481 catataagcg gtatagtcag aacagcgggc tgcttgctgc atattgtggg taactatcgc
    15541 taccgtgtag tcgtgcttga gttcgttgat aagttcttcg attttcatag tcgaaatcgg
    15601 gtcaagtgcg gagcagggct catccagcag taacacctcg ggtttcactg caatacctcg
    15661 tgcaatacag agccgttgct gttgcccgcc ggagagactg tcaccatttt ggtttaattt
    15721 atgctttacc tcattccata aagccgcttt ggttaatgcc cactctacac gatcgtttag
    15781 ctcggatttc ggcaattttt caaacagacg aataccaaaa gcaacattat cgtaaatgga
    15841 catcgggaat ggggtcggtt tttggaaaac cataccgact ttggctcgaa taatcgaaat
    15901 atccgtatcg gaggtgagta gattctctcc atcaagattg atttcccccg ttgcacgttg
    15961 attcgggtag agctcaaaca ttcggtttag ggttcgcagt aatgttgatt ttccacaacc
    16021 ggaaggaccg ataaatgcgg tcactttatt tttggcaata cgcatattga tatttttcag
    16081 agcgtggaaa tcgccataat aaaaattgag gttgttaata tgtaattttg tctctaaatc
    16141 cgttggtaac atatagagtc cttattttgt tttgctgaaa tacagacgag tgatgatatt
    16201 aagagaaagc acaaacagag taataagcat tgcacctgcc caagccaatg tattccagtc
    16261 agcgaacggg ctggctgcgt attgataaat caccacaggg aggtttgcca ttggtgcatt
    16321 catatctaaa gaggcaaact ggttggataa tgcggtaaac aatagcggtg cggtttctcc
    16381 ggaaatacgg gcaacagcga gcaacacgcc ggtaataatg ccggagcggg cggcacgata
    16441 agagatcatt gtaattaccc tccatcgtgg gcagccgaga gccgcagctg cttcacgcag
    16501 attattaggc acaagattga gcatactgtc ggtagttcga acaacaatcg gaatcactaa
    16561 taccgccaat gctaatgagc ctgcccagcc tgaatagtgt ttaacctgtg cgacataaat
    16621 cgcataaata aataagccga taataataga aggagcagag agcaacacat cattcaaaaa
    16681 acgggtgaat tttgccaatt tggtataacg cccgtattcg ctcaagtaag tgccggctaa
    16741 aataccgatt ggtgttgcaa tcagtgttgc ggtactgaca atcagtatag agccgacaat
    16801 tgcattacgt aatcctcctg tttcatttgg tgcaggagtc gggcgggtaa acagttccca
    16861 agacagtgca gggatacctt tttggagtaa agtaacaata atccagacca gccaaaataa
    16921 gccaaataat acagcggaat aggcaagact taacatcaag acatttttta tttttcggca
    16981 ataaaagcgt cggttttggt aatttttcat tctcgttttc cttcctgttt acccattcgt
    17041 gcgattaata aacgtgaagc ggctaaaaca atcgaagtaa taaggaacag aattagccct
    17101 aggctcatca acgctgattt ttgtaatccg ccggcttcat taaattcatt ggcgatagca
    17161 gaagcgatgg aggttgaagg ggaaaatacc gaatcaggta gcataaaggc attaccgatc
    17221 acaaaggtaa ctgccattgt ttcgcctaat gctcgaccta acccgagcat aattgcaccg
    17281 attactccgg ttttggtgta aggtagcacg actttccaaa taacttccca agtggttgag
    17341 cctaaaccgt aagcagactc tttcagtaaa ggcggtacaa cactgaaaac atcacgcata
    17401 attgaggcaa taaagggaat aatcataatc gccaatacca agccggcact gaatagcccg
    17461 atcccgaaag gagctccgct aaaaagcata ccgataaagg gaagctgacc aaatgtatct
    17521 atcaaatacg gttgcacata ttcttgaaat aagggtacaa atacaaacag cccccacata
    17581 ccgtaaataa tagagggaat agccgctagc atttctaccg ctgtgccgac agggcgtttt
    17641 agccattgcg gtgcaagttc ggttaagaaa gtcgcaatgc cgaacgagac cggaacggca
    17701 atgactaatg caatgccggc agaaatcaat gtgccgataa tcggcactaa tgcaccgtat
    17761 cggtcattca cagggttcca ctcgttttcc cataggaatg ataccccgaa tcggcttaat
    17821 gcttcccaac tgccaagcaa taatgaaacc agcaccacca ccaacaaggc aaaaaccagc
    17881 aaagcaaaga aacgggttgt gtgatgaaat aacccctcta cccaaggatg gtttaagcat
    17941 ttgttatcaa ttttatgttt atgcatagtg acaactcttt tgcaaaatgt tgtgaaaaaa
    18001 cgaccgcttg ttgttagtta agctccatac aagcggtcgt tttgcattag tagagcgaat
    18061 ttccttgtcc atctttaact tccgttttcc attgagtttg gattttctct actacattat
    18121 ccggtagagg cacataatcc agttcggcag ccgcatcttt accgtgctta aatgcccagt
    18181 cgaagaattt aaatacccct ttagtttgct ctggtttgtc gctatgttga tgaatcaaga
    18241 taaaactggc ggcggtaatc ggccaggctt tttctcccgc ttcgttggtt aaaataacgc
    18301 ccataccggc tgtttggctc caatcggcgt tagcagcggc agcagcaaac gtttcacggg
    18361 aaggctgaac aaatttacca tctgcatttt gcatagaaac ccaagccaga gcattttgtt
    18421 tagcataggc atattctacg taaccaatag aatacttgag ctgtttcaca taagctgcga
    18481 caccttcatt tccttttccg ccttgtccga ccggccattt caccgatttt ccttcgccga
    18541 ctttctcctt ccattcggca gagactttag aaagatagtt tgtccaaccg aaagttgtgc
    18601 ctgaaccgtc tgagcggcgt acgactaaaa ttgtttttgc cggcagggcg atatcttgat
    18661 taagtgcgac aattgccgga tcgttccatt gtgtaatttt gcctaggaat atatcggcaa
    18721 gaactttacc ggacagtttc agttcgcccg atttaagttc aggaatattg acaaccggta
    18781 cagttccccc aatgatggcg ggaaattgca aaagtttgtg ttctgctaat gtttcgcctt
    18841 tcatcgggtc atcagaagca ccgaaatcaa ttgttttggc aataatttgt tgctgaccgc
    18901 caccggaacc gatagattgg taattgattt tattaccggt ctctttttca tataaacctg
    18961 cccatttggc gtagatagga taagggaaag aagcaccggc tcctgtgatg gtttgagcat
    19021 ttgctgcgac agaaagtgaa aaagaaatgc ctaaaacggt aagtagttta aatcgtttgg
    19081 caatcatatt gttctcctta aagttagcgt gagttaattt cacgtgctta gtgtagaaaa
    19141 agaatatgac aaaatgatga caatggtaaa aaaatcagaa aaaacgaccg cttgtgtttc
    19201 aggctagact aaacaggcta aatcgtagaa aatagccctc gtttttttaa tataaatatc
    19261 gataaaaaat gaccacagaa atcaattatg aaggcattga acagatgccg attaagcgtt
    19321 ttaccgaaga tgcttacctc aattattcga tgtatgtaat tatggaccgg gcattgccgt
    19381 ttattggcga tggcttgaaa ccggtgcaac gccgtattat ttatgcgatg tcggaacttg
    19441 ggctaaacgc ctcggcaaag tataaaaaat cagcccgtac cgtgggggat gtattaggta
    19501 aattccatcc gcacggtgat agtgcctgct atgaagcaat ggtgctaatg gctcaaccgt
    19561 tctcttaccg ctatccgtta gtggacggac aaggcaactg gggggctccg gacgatccga
    19621 aatccttcgc tgcaatgcgt tataccgaat cgaaactgtc taaaattgca gaaattttat
    19681 tgggcgagtt agggcaagga acggtggatt atcagccaaa ttttgatggc tcgttggaag
    19741 aaccgaaata tctgccggct cgtttaccgc atattttgtt gaatggcacg atggggattg
    19801 cggtgggaat ggcaaccgat attccaccac acaatattaa tgaattggct gatgccagtg
    19861 tgatgttgct ggataacccg aaagcaacgc ttgatgatgt actaagcgtg gtacaagggc
    19921 cggattaccc gacagaggct gaaatcatca caccaaaagc ggaaattgcc agaatgtatg
    19981 agcaggggcg tggttctatt aaaatgcgtg cggtgtggaa aaaagaagag ggtgaaattg
    20041 tgatttcagc cttgccgcac caagcctctc cttcaaaaat tattgagcaa gtagcaaccc
    20101 aaatgcggaa taaaaaacta ccgatggtgg acgatattcg tgatgaatct gaccacgaga
    20161 acccgattcg cattgtgatt gtgccacgct ctaatcgcat tgattttgat gcgttaatgg
    20221 atcacctgtt tgcgacgacc gatttggaga aaagctaccg agtcaatatg aatatgattg
    20281 gcttagacgg caagccggca gtgaagaatt tgctgactat tctcaatgag tggctgagtt
    20341 ttagacgtac cactgtcact cgccgcctga attaccgatt agataaaatt ttaaaccgct
    20401 tgcatatttt agacggtttg atgattgcat ttctcaatat tgatgaagtg attgagatta
    20461 ttcgcaatga agatgagccg aaagccgagt taatggctcg ttttaatctg accgatgtgc
    20521 aagcagaggc gatcctgaac ttacgtttac gccacttagc caaattggaa gagcatcaat
    20581 tacaggcgga aaaatccgaa ctggaaaaag aacgtgatga attgcaactg attttaggct
    20641 cggaacgccg tttgaacagc ctgatcaaga aagagattca agccgatgcc aaagcatttg
    20701 ccagcccacg ccgctcacca ttggttgaac gagcggagtc taaagcgatt gcggaaagtg
    20761 acttgactcc aaccgaagat gtgactgtga ttttgtctga aaaaggctgg gtacgttgtg
    20821 cgaaaggaca cgatattgat gttcaagccc taagccatcg agccggagat ggttatcttg
    20881 cccacgcaag gggtagaagt aatcagcctg tggtattttt agacagtaca gggcgagctt
    20941 atgctctcga tccaacttca ctgccttcgg cacgctcgca aggcgaaccg cttacaggca
    21001 aaatcaccct accggaaggt gcagtagtgc agcaagtgct aatggcaagt ccagaaacta
    21061 aagtgctaat ggcatccgat tcaggttacg gctttatttg cacctttgca gatttagttt
    21121 ctcgtaataa agccggcaaa gcggttattt ctttaaccga aaatgcaaaa gtactgccgc
    21181 cgcaattatt ggaaaatgat gaaaatttat cgcttgtagc gatgagtaat gttggcagaa
    21241 tgttggtttt cccggtgagt gaattacctc aactttccaa aggtaaaggc aataaaatca
    21301 tcaatatttc cgccgcagcg gcaaaatccg gtgatgaata tttagcccgt ttattagtca
    21361 tcaaaccaac caactcgctg gtctttgtgt ccggtaaacg caaaatcaca ttaaaaccga
    21421 gcgatgttga taactaccgt ggcgaacgag caagaaaagg ctcacagcta gtgagagggc
    21481 ttagtaccaa ttcaacggta gagattgttg agtaaagaga agaagcggtt agggggtaaa
    21541 tccaacaatt ttgccccaaa taaccgcttg caatggagtt attgcttatt caaataagcc
    21601 tttgtgaagc gaacgaacca catcgtctgc ttctgcattt ttcactaagg tacaaacatt
    21661 attgctgctt gctccatagc tgattaggcg aatgttgtaa ttctcaagag tgtggaataa
    21721 ttttttcgcc acaccggact gagcgtgtaa gttgttgccg ataatagcga ctaaagcgag
    21781 gtcgctttct acttgcacat tgcaatatgc gttaagctca tcgagtaatt ccgctgataa
    21841 catatctgca cctgaagagg ctgagcccgt tttatctagg gtcaatgcaa cgctgacttc
    21901 ggaagtggta atcacatcaa ccgaaatttt gtgtttcgct aaaatcgcaa atacattcgc
    21961 taagaaacct tgtgcgtgta gcattgaaag gctggaaagc gtgagtaaaa tttggttgcg
    22021 gcgtaatgca atcgcacgga aagtcgggcg tggttgtgga tcacgggtta cccaagtgcc
    22081 gccttgttcc ggtgctttgc ttgagccaac atatacaggg atattgctac gcactgccgg
    22141 taataaggtt gctgggtgta atactttcgc tccaaatgtt gccatttctg ccgcttcgtt
    22201 aaatgccatt gtgtcaatgc gttgagcgtt cggtacaaca cgaggatcgg tggtataaat
    22261 ccccggtacg tctgtccaaa tgagtacatc gttagcattt aatacttctg ctaacaatgc
    22321 agcagagtag tctgaaccgc cacgtcctaa agtagtggtt ttgccttcat catcacgacc
    22381 aataaagccc tgtgtaatca caattttgcc tgatgcgatt aatggcttaa tcacattgtc
    22441 tgattgttgc tgggttttct cgtcatttgg tgctgctttt ccataatggc tgtttgttgc
    22501 cacaacgtca cgcacatcta cccatactgc cgggtgtcca cgttcaatta ataattgcgt
    22561 gaagattttg gtggacatca tttccccatg gctgattaac tcatcactta aggcagctga
    22621 agtagcaagg ctggctgatt ctgctaatgt ttcaatacgt tctaataatt cgtcgatttc
    22681 cgctttaacg gcatcttgat gttgtaattt ttcaataata ttgtattgaa tttggcggac
    22741 tgctgcgatg acttcatcac ggtgttcttt ttcacagccg ttagcaagtt ccactaagta
    22801 attggttacg ccagcagagg cagaaagtac caccacacga gtatttgcat cagcaattac
    22861 aatattggca gaagaggtca ttgcatcaaa atttgcaaca cttgtaccac caaatttagc
    22921 cacagaaaga tgagacataa taaaaatttc cttaaaacaa aaatagataa atattgtgtt
    22981 aggggatatt cggaaaggaa atttgagtag attatacggt tttattgttg aaccaattaa
    23041 tcagagcact ccatttaata tggtgaaata acctattaaa tgacagctga taggattcaa
    23101 cctattcagc cgatgttaat tccagtctag tgaattcaca cctcggcaat cactcccatc
    23161 acttaattct caaacggccc tagttgccta aaatcaagtt gcctgagtgt tgcacctctc
    23221 ccgtaatggc aagcccatta ctctttttca acagtattga aaagtgtgca tagaaatacc
    23281 gttttattaa tgttttgtca atgaatattt a
//
LOCUS       DANMGB010000016        23117 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.016, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000016 DANMGB010000000
VERSION     DANMGB010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23117
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.016"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            122..550
                     /gene="rplM"
                     /locus_tag="PXG19_000493"
     CDS             122..550
                     /gene="rplM"
                     /locus_tag="PXG19_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL6065824.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            567..962
                     /gene="rpsI"
                     /locus_tag="PXG19_000494"
     CDS             567..962
                     /gene="rpsI"
                     /locus_tag="PXG19_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL6065825.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            2644..4364
                     /gene="ltrA"
                     /locus_tag="PXG19_000495"
                     /pseudo
     CDS             2644..4364
                     /gene="ltrA"
                     /locus_tag="PXG19_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341372.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            4553..5329
                     /gene="yaaA"
                     /locus_tag="PXG19_000496"
     CDS             4553..5329
                     /gene="yaaA"
                     /locus_tag="PXG19_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL6065826.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            5329..5892
                     /locus_tag="PXG19_000497"
     CDS             5329..5892
                     /locus_tag="PXG19_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL6065827.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            5901..6806
                     /locus_tag="PXG19_000498"
     CDS             5901..6806
                     /locus_tag="PXG19_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL6065828.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            6806..7558
                     /locus_tag="PXG19_000499"
     CDS             6806..7558
                     /locus_tag="PXG19_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL6065829.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            7659..8984
                     /locus_tag="PXG19_000500"
     CDS             7659..8984
                     /locus_tag="PXG19_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL6065830.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(9044..9703)
                     /locus_tag="PXG19_000501"
     CDS             complement(9044..9703)
                     /locus_tag="PXG19_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6065831.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            9932..10918
                     /gene="pheS"
                     /locus_tag="PXG19_000502"
     CDS             9932..10918
                     /gene="pheS"
                     /locus_tag="PXG19_000502"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL6065832.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            10966..13353
                     /gene="pheT"
                     /locus_tag="PXG19_000503"
     CDS             10966..13353
                     /gene="pheT"
                     /locus_tag="PXG19_000503"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL6065833.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            13411..13707
                     /locus_tag="PXG19_000504"
     CDS             13411..13707
                     /locus_tag="PXG19_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL6065834.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            13746..14267
                     /locus_tag="PXG19_000505"
     CDS             13746..14267
                     /locus_tag="PXG19_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6065835.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            14283..15326
                     /gene="degS"
                     /locus_tag="PXG19_000506"
     CDS             14283..15326
                     /gene="degS"
                     /locus_tag="PXG19_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL6065836.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            15335..16009
                     /gene="cmk"
                     /locus_tag="PXG19_000507"
     CDS             15335..16009
                     /gene="cmk"
                     /locus_tag="PXG19_000507"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL6065837.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            16101..17768
                     /gene="rpsA"
                     /locus_tag="PXG19_000508"
     CDS             16101..17768
                     /gene="rpsA"
                     /locus_tag="PXG19_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL6065838.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKTVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
     gene            17897..18178
                     /locus_tag="PXG19_000509"
     CDS             17897..18178
                     /locus_tag="PXG19_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL6065839.1"
                     /translation="MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIE
                     VRGFGSFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            18215..18502
                     /locus_tag="PXG19_000510"
     CDS             18215..18502
                     /locus_tag="PXG19_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL6065840.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            18506..19702
                     /gene="lapB"
                     /locus_tag="PXG19_000511"
     CDS             18506..19702
                     /gene="lapB"
                     /locus_tag="PXG19_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL6065841.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            19726..20418
                     /gene="pyrF"
                     /locus_tag="PXG19_000512"
     CDS             19726..20418
                     /gene="pyrF"
                     /locus_tag="PXG19_000512"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL6065842.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            20501..20812
                     /gene="yciH"
                     /locus_tag="PXG19_000513"
     CDS             20501..20812
                     /gene="yciH"
                     /locus_tag="PXG19_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL6065843.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            20915..23077
                     /locus_tag="PXG19_000514"
     CDS             20915..23077
                     /locus_tag="PXG19_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL6065844.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
BASE COUNT         7294 a         3949 c         5156 g         6718 t
ORIGIN      
        1 gttttccccg ccacacaagt ttggtctgaa tcagactcga aggggtcggg ttcaccgtaa
       61 aataatagga aatacctcaa tgaggtattg ggttttaaac tttaaatttg gtatttaatt
      121 aatgaaaact tttgtagcaa aaccagaaac agtacaacgt gactggtatg tagtagatgc
      181 gacgggtaaa acattaggtc gtttagcgac tgaattggca cgccgtcttc gtggtaaaca
      241 taaacctgag tacactccac acgttgatac cggtgattac atcatcgtga tcaatgcaga
      301 caaagtagca gtaacaggta aaaaacaaac tgacaaaatc tactactggc acactggcta
      361 tgtaggtggc atcaaagatg caaccttcaa agaaatgatt gctcgtcgtc ctgaagctgt
      421 gattgaaatc gcagtgaaag gtatgttacc aaaaggtcca cttggtcgtg aaatgttccg
      481 taaattaaaa gtttacgcag gttcagaaca caatcaccaa gcacaacaac cacaagtttt
      541 agatatctaa ttcacggagc ataaaaatga cagcagcaaa tcaaaactac ggcacaggtc
      601 gccgcaaaag ctcttcagcc cgtgtattta tcaaaccggg ttcaggtaac attactatca
      661 accaacgttc acttgaagtt tacttcggtc gtgaaacagc tcgtatgatc gtacgtcagc
      721 cgttagaatt ggttgaatta actgataaat tagaccttta catcactgtt aaaggtggtg
      781 gtatttctgg tcaagcgggt gcaatccgtc acggtatcac tcgtgcatta atggaatacg
      841 atgaaacgct acgcccagca cttcgtgcag caggcttcgt tactcgtgac gcacgtcgcg
      901 ttgaacgtaa aaaagtgggt ttacacaaag cacgtcgtcg tccacaatac tcaaaacgtt
      961 aagtgcgaca agttgtcgta cttatggcaa taactcctta tatatcaagg agttattgct
     1021 ggaagtgggt ggtattctta tcacctgctt ccgactttcc aagcactctt cggagtgctt
     1081 ggaaagacag gcaagagaaa aggggctttg cccaagcact cttgttctaa gttgggaaag
     1141 taaatgaacc aactcgaaag gctgtaaggt atgatcttca ctttgatgta cttggttttt
     1201 ttcttaatac caagatagag taagaaagca agatccgcag accggagtta cccatacccc
     1261 agagcagaga aaatttacaa cacctactat aaataaagtc caatagatcg cctcagcact
     1321 cagaaaagac atcagaacta agacttggta aatcttaggg aaggagtgcc atctttactt
     1381 atacttttca cactcgcaat ctacggtaat cgtagaatgc tcctcaatag tgaataaaaa
     1441 cactaaggat aaactcttgt ttattcgttt ttatgagcta gggataatta taccttaaat
     1501 tctcgttaaa atcacctcta atactcacat tagctagggt tagctacctt cgcctattgg
     1561 acaggttata ggctatttgc gggaaaattt ggatatagac aaagcgactt tagtcgcata
     1621 agtgaattta ttttgtaaag gttcggactt atttatgcag tataggatac tgacttagta
     1681 agtatgcgta agctattact gtcattgtta cggtcaaaca atccgaagat atgagtagta
     1741 cggagggaat gataaggtaa cctgttatat ggctaacagt agtctaggga tagtgcgaca
     1801 ccggtaacgg tgtggtgcgg agcttcctga caatgaaccc ctgatgaaaa tcagtcaatg
     1861 aaatcgtgag aggacattgg gagaaagtga atagcacacc ttcaaggggc tagactgggt
     1921 agaaagataa acgtaagtga acagttgata aacctcgtta tcgagagaga gccaaagcta
     1981 ttgataggct ctgaccaaaa ggtaggcagt cggttattct tctttaacgt gaggatacgc
     2041 catcaaagca ctgtcggggg agagactgta tcttcactac tcgtgtgata gtaatggaac
     2101 ttggtaagcc tgtatttctg ccttgcccac aatactcaaa ccgtttgaaa tagatggcga
     2161 aggtaaaaga ggaaaaggca agtaaagcgt aagcgatact gttgggaatg caggtaaggg
     2221 aggttagaaa aagcgaatgc tatgctgtaa tggcatagat agggtgtgaa acatagccta
     2281 acccgaaagg gtgcagactt ctaactggtc tttcatcgta agatgaatag cgtttccttt
     2341 aagggtaaca ccgaaagaga ttgtagataa cagaagagaa attgaatgtt atcaaggaat
     2401 acaatgttga ataggtacaa aaacaaatta aagaaatgag cgttaggctc atcataacct
     2461 agcgctcgac tctttaaccc aatcggttac aagagcggtt gaaattatcg gtaaaacggt
     2521 aagatcctct tgtaaccaaa gggaataaac taaggatagt ttatctcaat agggatttgt
     2581 ttacttgaag gatctaccca cttgctgaga ctttcgactt atcttgtaat atcagaggta
     2641 ggtatgaaag agcgtaagca ttatactgaa aagttagctt gcaatccagc gacctcgcac
     2701 atctccaaat ggcattatgt cgattggcat aaagctgaaa cgtatgtgaa aggaatgcaa
     2761 attcggattg cgaaggcaac actggaaggc aattggcgta aggttaaaaa cttacaacga
     2821 atgctaaccc actcacatta tgctaaatta gttgcagtaa gaagagtgac tgaaaatcaa
     2881 ggtaagcgaa caagtggtgt cgataaagag ctttgggaga ccccagagac aaaatggcaa
     2941 gccgcactat cattgacgga aaaagggtat aaacctagtc cattaagacg agtgtatatc
     3001 cccaaaccga atggaaagaa acgtccgttg ggtattccaa caatgcgaga tagagcaatg
     3061 caagcccttt atttattggc aatacaacct gtggcagaaa caactgcgga taaaggttct
     3121 tatggattta gattaaaccg ttcaacggta gatgctatta ctcatataca ctaaatttat
     3181 tcgcataaag gcaagaaaac taatcaacct gttgagtggg tacttgatgc ggatattgca
     3241 ggttgttttg accacataag ccacgactgg ctattaaagc atattccaat gaataaacgg
     3301 atattgcgga aatggctaaa atcaggtgta gtggaatttg gacggttgaa acgaacagag
     3361 gaaggtacac cacagggtgg gattatctcg ccaacgcttg caaatatggc attagatgga
     3421 ttggaaaaac tgttagaaac tcattttgga ggaaaaggca gtcggacaat tcgagaaaat
     3481 aaaacttact tagtacgtta tgcagatgac tttatcatat caggtaaaac gaaagagtta
     3541 cttgaaaatc aagttatccc acttatccag aactttctga atgaacgagg tttatcctta
     3601 tcaacagaaa agacgaaagt ggtacatatt gaagaaggtt ttgattttct aggttggaat
     3661 gtgagacgtt tcaaaggaaa aatactgaac agaccaagtc aaaagaatgt gaaagcgttc
     3721 tacaacaagg taaaagaggt aatttctaaa tgaaaatggc taaacaggaa gatcttataa
     3781 tggtgctaaa cccaatgtta cgaggttggg caaattatca tcgaagccaa gttgcaagta
     3841 aggcattcgg acgaatggac gcattagttt ggaaagtact ttggaaatgg tgtgaacgcc
     3901 gtcatcacaa taaaggtatt atgtggataa aagagaaata cttttgtacc acagcgactc
     3961 gaaattgggt atttggcaca gtttatacca atgaaaaagg agaaactaag ccgatagact
     4021 tattctattg tggctatgtt aaaatcaaac gacacgttaa aattaagtct gaatataatc
     4081 cgtttttgcc tgaatgggag ttgtacggcg aaaaactgag ccaagaacgt ctgtatgaag
     4141 aacaatcaca cagacgacaa tggcaggcac tgtataaaga ccagcgtgga aaatgtgcat
     4201 tatgtgggtt gccaataacc aaagaaacag gctggcacga tcatcatatc gtgtacaaaa
     4261 tgttaggagg aagcgatgca ttaagcaatc gttgtttggt acatccgact tgtcacataa
     4321 agattcatac tttgaacttg gaggtcgtga agccggctat atagctgatg aaaggcttga
     4381 gctgtatgca gagaaatttg cttgtacagt tcttaggggg cggaggtgca gtaatgtact
     4441 ttcgctaccc gacttttctt ttcgttttca agaaggcagg gtttcctgcc ttttttgtct
     4501 ttatgactgt ggtagaataa ccgccctgat taactatttg atagaggcat ttatgttagc
     4561 cattatttcc cctgccaaaa cccttgattt taaaaccaat attgacggtt ttgcattttc
     4621 tcaaccaaat ttgaccgctt gtagccaaga attaattgat atttgtaaac agctttcacc
     4681 tgctgaatta ggtagtttga tgtcaattag cgataaatta gccgctttaa atgtggctcg
     4741 ctttgccgag tggcagcttg agcataacga acaaaatgcc aaagccgccc tctttgcctt
     4801 taaaggtgat gtttataccg gactagaggc agaaacgtta agcaaagcac aagttgaata
     4861 tgctcaacaa catttgcgta tgctttcagg cttgtatggt ttattaaagc cgttagattt
     4921 aatgcagcct tatcgtttag aaatgggcac taagttagcc aatccgaaag gcaaagatct
     4981 ttatgctttc tggggcaata ttattactga aaatttgcag caagcgattg atgaacaagg
     5041 cgatgatatt ttagttaatc ttgcctctga tgaatattat ggtgcggtta agccacaaaa
     5101 tctaaatgcg actattatca agccggtgtt tttagatgag aaaaacggta aatataaagt
     5161 gatcagcttc tatgccaaaa aagcccgtgg aatgatggtt cgctttatat tagacaccca
     5221 accgactagc atcgaacagc tcaaacagtt taactacggg ggctattggt ttgatgcaga
     5281 cagttctagt gaaagcgagc tagtctttaa acgtgaggag caggcataat gtcggctatc
     5341 aaaaagggaa taactttggt tgcgttatca ttggcaggtt gtgtcagcca aagcccacaa
     5401 tttgcagtgc ctgatgctat tcactttggg caggatactt ttgtaaaagt cacccacagc
     5461 caaattgatg aaatgcaaca tttactttat ttgccagaaa agagtgagaa aaatccggaa
     5521 aattggcaaa aaggcatttt atttttctta gataaaaaca gtaaaaatca aaccttagag
     5581 caacgagctg cattccgcca agcaagtttt gcgaaaaagc cggagcttga ggcgaaagtg
     5641 gaaattcagc aaaatgaatt acacagcagt gtgatttatc cacctataga acgttttaac
     5701 aatgtgatgt tagaagtaac ccgtgggcgg aatttagctt gtggttacgg gcagattcaa
     5761 tttgcagata agcgggaagt tggcaagaca gttgcaaaaa aatcgccgaa tttgaccgct
     5821 tacagccaag aaattgctag actttctctt gaattaaacc aactgggttg gcaagtccaa
     5881 tgcagtaaat aatgtagtaa atgaacgaaa aatacagcaa attagtcaaa aatgcagcga
     5941 atttagcgat tattgttgcg atcttactga ttgtgattaa agcctttgca tggtggaaaa
     6001 ccggttcgat ttcaatcttg gcagcaatga cggattcggt agtggatctg tttgcttcgc
     6061 taaccaatat tttagtgctg cgttttgcac tacaaccggc agatgagaat cacgcgtttg
     6121 ggcacggcaa agcggagtct ttggcggcac ttgcccaaag tgcgtttatt tccggctcgg
     6181 cggttttcct actgctacaa ggtttccata aactcaccaa tccggaatta attgctcaat
     6241 cgagtattgg ggtaattgtc agtattgtat caattgtgat tactgcactt ttagtctttt
     6301 atcagcgtta tgttgtcacg cttacgaaaa gtccggcgat tgaagcggat tcgttacatt
     6361 accaaactga tttattaatg aatgcggcaa ttttagtggc aatgttgctt aatagtgccg
     6421 gttttgtgta cgccgatgca gtttttgcaa taggtattgc cctctacatt gctttcaatg
     6481 cagtaaaaat gttttggtgt gcggtgcaaa ccttgctaga ccaagctttg cccgatgaag
     6541 aaattgagcg gattaaagag attgcttcgc aacatccgaa cattttaggg attcacgata
     6601 ttctaacccg ccgtgcaggt gcagtgcgtt ttatccaatt acatttggaa ttagacgatc
     6661 acttaacgct gctagtagct cacgaaataa ctgatagcct tgagcagaaa ttgctggcgg
     6721 catttccgat gtctcacgtg attattcatc aagagccgac tacggtggtc aaacaagaat
     6781 ttcaagatat ggcggagaat atttaatgta tcaggcgata gtgcatttca gctatcataa
     6841 ttttgagcaa gatccggtga cggcaattag ccaaatctta aatcaatggt tatataacgg
     6901 gcaagtcatt ggcagagaaa tgccgattac ttttcatcaa aacgagtttc aagctcgggt
     6961 ttgtgtgcct acacaagaaa gccttttgcc acaatataat agtgatgaag taaatgaagc
     7021 gttgcaacaa gcggtcgaaa tcggcgtaat ttttgcaagt tttgagcttg tcgggcgaga
     7081 ttatcagggc gaagaaagca gtcataaccg ctcgccagcg tttcaaatat tatataccac
     7141 ccatttagat acctgctcgc cactttatga tggagagcag tttgccccaa ttccgcttta
     7201 ttctttacag gatcagtctc ttagcgaagc gatattggaa tggcagcaaa attggcaagc
     7261 gtgcgatctg ctacaaatga acggcaatct gctggagtgc cacgcacttg ttcaaattag
     7321 tgatgaaaca agcgatcttg caatgatcgg tcgagatcta tgtcagcaaa ttgagcagaa
     7381 aactcacatt cccacctttt attacctcta ccgtttaggg cgtgatgaaa gtgaatatca
     7441 acgcaaatgc ccttgttgtg gcggagaatg gaaattaact gagccgttgc acgatatttt
     7501 ccattttaga tgtgagcctt gccgtttgat ctctaatcta agctgggaat tattataact
     7561 tttagttata ccaaagtaat aaatcatctt gaatgaatgc cgcaagcgta atacccttgc
     7621 ggcattttta taataagcgg ttttactttg gaggttctgt gcttattttc aacttaattg
     7681 tctttgcggc aatattattt ttattggcta aaatttataa atctacgcaa aaactcggtc
     7741 aaacagtgtt tattgggtta tttttagggc ttgcaagcgg tgcttttttg caaacttttt
     7801 acgaaaaagc tactgttgat gcaactcttg attggattaa cttaattggt aacggttatg
     7861 ttcgcttgct acaaatgatc gtaatgccat tggtgtttgt ctctatttta tcggcaatta
     7921 cccgcttaaa agaggcagga tctttaggca aaattagttt tagtgtgcta tcagtgttat
     7981 tagtgaccac cgcgattgcc gcagcgattg gtattgcttt agtgtatctg tttgatttat
     8041 ctgccgaggg tttagtcgcc ggctcccgtg agcttgccgc tcaagagaaa gtggtagggc
     8101 gtgtggagca ggtgagcaac ttatctgtgc cttcaatgtt gctttctttc attccgaaaa
     8161 atccgttttt agaattaacc ggtgcaaacc caacgtcgat catcaacacg gttattttct
     8221 cggctctgct aggcattgct gcactgagct taggcaaaga agataaagcg ttgggcgaac
     8281 gtatcgcaca aggtgtagag accttaaata aactggttat gcgtttagta cgttttgtga
     8341 ttcgcctaac cccttatggc gtatttgcgt tgatgatcaa aatggcggca acttctcaat
     8401 ggagcgatat tgtaaattta ggtagcttta ttgtggcatc atacattgcg attggtttga
     8461 tgtttattgt gcacggtatt ttactctttg tggctaaaat caacccgttg gattactaca
     8521 aaaaagtgtt gccgacatta agttttgctt ttacgtctcg ttccagtgcg gcaaccattc
     8581 cgttgaatat tgagacgcaa accaataaat taggtaataa cagtgtgatt gccaactttt
     8641 ctgcaacctt tggggcaacc atcgggcaaa atggctgtgc gggaatttat ccggcaatgt
     8701 tggcggtgat ggtcgctcca acagtgggaa tggatccgtt tagcttaaac tatattttaa
     8761 ccttgatttt ggtggtggca atttcctcat ttggcattgc cggtgtaggt ggtggtgcaa
     8821 cttttgcggc gattgtggtg ctatcaacct tgaatctgcc gattgagtta gtaggcttgc
     8881 tcatttcagt tgagccgatt attgatatgg ctcgcaccgc cttaaacgtg aatggtgcaa
     8941 tggtggcggg cacattaacc aataaatggg tgaaagccga gtagtcaaaa ctaaagatat
     9001 aaaaatgggc gattaattcg cccgttttta taagttaagg tgattattca atccacgcaa
     9061 tcacttcttc ggtaggtttg cgggattttt tcttaatttc tttgttgcga tagccaaaag
     9121 ttatcataca agacacacca tattcgttta ggtcaaataa gccttcgtcc gataaaattt
     9181 ggtttacggt atcgtaatga aaaccttcaa tcgggcaaga gtcaatacca atcagagccg
     9241 caccggtcat catattgcct aatgcaatat aggtttgctt ggtactccaa tcgaataatt
     9301 cacgttcact aagcaatttc atatcctctt cttggaacga cttatagcgt accagcgagg
     9361 cttcaatctg ctcataggtt aagcctcgtt tggctaacat atcacgcata tagacagaat
     9421 cataacggac attctttttg gttaaaatca ccactaaatg gctcatttct tccattgggt
     9481 gtttaattcc ccacgaaacc ggggcgattt tctgacgggt ttccgggttt tgtagcacta
     9541 aaaatttcca cggttcagaa ccgacagagc ttggtgagag acgcccgagt tccaaaatat
     9601 aatccatatc ttctttgttg atttttttgt ttggatcgta actgcgacag gccgaacgga
     9661 agtgaaaagc gtctaaaact tgctgtttgc taatattaaa catcgttttt ccttttataa
     9721 gtgaaataag tagattaatg ataacttgat ttagagcaga atgcgaattt cacgcctgtt
     9781 aatttgcaaa aaattaggaa aaaatgaccg cttgtttaaa attgctttac cttaaaaatc
     9841 aatcatttaa cgaatcggtt gatttacttt ttctggctaa agtattatta ttcatgaaat
     9901 tttttatttc attgagttta gaggataggt aatgcaacac ctaaaagatt taactaataa
     9961 agcacgtgaa gctttagata agattgatca aaatttagag gctttagaag agtttagagt
    10021 cgaatatttt ggtaaaaaag ggcattttac aacgttaatg caagaattac gcaatattgc
    10081 agcggaagaa agaccggcaa tcggagcaaa aattaatgaa gcaaagcaag ttgtgcttga
    10141 tgtgttaaat gccaaaaaag aagaatggga acaagctgta ttaaatgcaa aattagctaa
    10201 tgagagcatt gatgtttcac tgccggggcg taaaactgaa ttaggtggtt tgcaccctgt
    10261 ttctatcact attgagcgtg tggtgaaatt tttctctgaa ttaggtttta ccgtagcaaa
    10321 cggacctgaa attgaaaccg attactataa cttcgatgcg ttaaacattc cggatcatca
    10381 tccggctcga gcggatcacg atacgttttg gtttgatgcc aatcgtttat taagaaccca
    10441 aacctcgggt gtgcaaatcc gtacaatgga aaatgtaaaa ccgcctatcc gtattgtggc
    10501 accggggcgt gtatatcgta atgactacga ccaaacccac acaccgatgt ttcaccaaat
    10561 cgaattgtta tatgtggata aagaagcaaa ctttaccgag ttaaaaggct taattcacga
    10621 ttttctcaaa gcattctttg aagaagattt acaagtgcgt ttccgcccgt cattcttccc
    10681 attcactgag ccttctgcag aagtagatgt aatgcgtcaa aacggcaaat ggttagaagt
    10741 gttaggttgc ggtatggtac acccgaatgt gttacgcaat gtagggattg accctgaaga
    10801 atatagcggt tttgctgtgg gaatgggcgt cgagcgttta acgatgttac gctacaatgt
    10861 cacggattta cgttcattct ttgaaaatga cttacgtttc ttaaaacaat ttaagtaata
    10921 caagcggtta aaaatttaga aaattttaca aataggatag aaataatgaa attcaatgaa
    10981 tcttggttgc gtgaatgggt aaacccagca attagcacag aacagttatg cgaccaaatt
    11041 acaatgttag ggttagaagt tgacgatgta gagccggtag ctggtgcgtt ttcgggtgta
    11101 gttgtgggtg aagtggtgga atgcgcccag cacccggatg ctgacaaatt gcgtgtcact
    11161 aaagtgaatg ttggtggcga acgtttatta gatattgttt gtggtgcacc aaactgccgt
    11221 caaggtttaa aagtggcttg cgctgttgaa ggtgcagtgc taccgggcga tttcaaaatt
    11281 aagaaaacca aattgcgtgg tcagccttca gaggggatgt tatgttctta ctcagaactt
    11341 gggattaaag aagatcatag cggtattatt gaattacctg ctgatgcacc tattggtcaa
    11401 gatttccgtg aatatttaaa tttaaatgat gtggcgattg aaatcagcct tacgccaaac
    11461 cgtgccgact gcttaagcat tgccggcatt gctcgtgaag tgggggtgat taaccgtgtc
    11521 gatgtgaaag ctccaactat tacagatgta aaagccacga tttcagataa agtttcagtg
    11581 gaattacaag caccggaggc ttgccctcgc tatttagccc gtgtggtgaa aaatgtgaat
    11641 gtcaaagcga catcgccact ttggttacaa gaaaaattac gccgttgtgg gattcgctca
    11701 atcgatccaa tcgttgatat tactaacttg agccttttag aattagggca gccaatgcac
    11761 gcctttgatg cagcgaaaat tgaaggtggc attcaagtgc gtatggcaaa agaaggcgaa
    11821 gaattggtat tgctagatgg cacaaacgct aaattacaat cgaatacctt agtgattgct
    11881 gatagcaaag gggcattggc tatggcaggt attttcggtg gcgaagccag cggggtgagc
    11941 gagaatacga aagatgtggt gttagagtct gcattttttg ctccattagc gattaccggt
    12001 cgcgctcgtc aatatgggtt acataccgac gcatcacacc gttttgagcg tggggttgat
    12061 ccagaattaa ctcgtcaagc aatggagcgt gcaacggcat tattactgga aatttgcggc
    12121 ggtgaagcag gtgaaattgt ggaagccgtg agccaagaaa acctaccaaa acgcaatact
    12181 gtcacgctta gacgcagtaa attagattcg gtgattggtc atcatattga cgatgcaacg
    12241 gtaaccgata ttttaacccg cttaggcttg aacgtaacat ttgcggataa tagttggacg
    12301 gcaattgctc caagttggcg ttttgatatt gaaattgaag aagatttaat tgaagaaatc
    12361 gcgcgaattt atggctacaa cagtatccca aataattcgc cacttgctca tttaacgatg
    12421 aaaggtacgc cggaaaaatt actggaagca aaccgtattc gtatggcatt ggtagatagt
    12481 gattaccaag aagtgattac ttatagcttt gttgatccga aaaaacaatc attattgcac
    12541 ccacagcaag aagccttgat tttaccaaac ccgatttcaa gtgaaatgtc ggcaatgcgt
    12601 gtttctcttt taaccggttt gttggacact atcgtgtata accaaagccg tcagcaaaac
    12661 cgtgtgcgta tttttgaagc aggtctacgt tttattccgg atagcaatgc ggaatcaggc
    12721 gtgcgtcaag aatttgtttt tggtgcggcg attgtaggcg ataaacgtcc ggtacattgg
    12781 gaaaacaaat cagaagcagc cgatttcttt gatttaaaag gcgatattga gcgtattctt
    12841 tctttaacct ctatccgcca cgatctgcaa tttgtcgcaa aacagttccc agcattacac
    12901 ccggggcaat cggctgcgat tatgcttgat ggcaaagaaa ttggttttat cggaactgtt
    12961 cacccgtcaa ttgtgcaaaa gtttggcatt aaaggcaaac cgattgtatg tgaaattcta
    13021 gcatcagcta ttgcagagcg tccggttaca caagcgggcg aaatttctaa atttcctgca
    13081 aataaccgtg atattgcggt agtggttgat gaatctgttc ctgcaggtga ggtgttagag
    13141 gcttgtcgta aagctggtgg taataaatta gtggcagtaa atttatttga cgtttaccgt
    13201 ggttcgaatt tagaaagtgg taagaagagt ttagccatta gcttaacggt tcaagataat
    13261 gaaaaaacat tagaagaaaa tgaaatcaat gcggtaattc aagcggtatt agctgaatta
    13321 gcaacacgtt tcaatgcggt acttcgtgat taatcagtaa aatatggctg atttatttta
    13381 tcagccataa caataaacta aggataaatg atggcgctta ccaagattga aattgcagaa
    13441 aacctgattg aaaaatttgg gttagaaaag cgtgtagcga agcaatttgt tgaattgttc
    13501 tttgaagaga tccgatcctc cctcgaaaat ggtgaagaag tgaaattatc tggttttggt
    13561 aatttttcac tgagagaaaa aaaagctcgt ccaggaagaa atcctaaaac gggggaaaat
    13621 gtggctgttt cagcccgtcg agtagtagtt tttaaagctg ggcaaaaatt acgagaacgt
    13681 gttgagcaag ctagctccca atcatagggg cagttatatt agttagattt aatgtggagt
    13741 aataaatgaa attaaccaaa cggtggcttt ccttaggttg tttgttagct attacagcga
    13801 tgttagtggc ttgttcaagt tcagatacaa cctctaagtc tcaagtaaaa agtaaagttt
    13861 atcgttcaat ataccaatca gacctttctg atcctattat ggcaattagt cgattaagtg
    13921 aacatcaaca cgaatggaaa ggcactcgct atcgtttagg tggcaatagc aaggctggca
    13981 tcgactgttc tggttttatg caagtcactt ttaaagatct ttttgggata gatttgccga
    14041 gaaccaccac agagcaggct aaggctggtg agcgtatatc caaagacgaa ttgcgtacag
    14101 gtgatttagt ttttttcaag acagggcgtg gtccaaatgg gaaacacgtt ggtgtttatg
    14161 taaaaaatgg gcaatttctt cacgcctcaa caaagggagg ggtgatttat tctgatttgg
    14221 attcgccata ttggtctaag gctttctggc aggctcgtcg tttataattt agggtaacat
    14281 acatgctgaa aaaaatcgga caagcggtca tatttggact tttttgtgca attttaattt
    14341 tgtttgtagc tccaattatt cagagtaaag ggagttcgtt ttcattatca gcattcactc
    14401 aaaaagagat tgtaagctac aatgcagcgg ttaaaatagc ctcccccgca gtcgttaacg
    14461 tatatagccg aaattttagt tctgaaaatg aaacatttga agttaagaat ttaggttcgg
    14521 gtgtgattat gagtagcgat ggctatattt taactaacag gcatgtgatt gaagatgcgg
    14581 atcaaatcgt gattgctttg caaaacggtg ctatttcgac taatgtaaaa ttagtcggcg
    14641 atgattcttt aactgattta gctgttttaa aaattgaggg tgagaattta cctactattc
    14701 cacaaaatcc ggagcgcaaa ctacaaattg gcgatgtggt gttggcaatt ggtaatcctt
    14761 tgaatttagg acagagcatt acgcaaggga tagtcagtgc tattgggcga aaaaccttaa
    14821 cagaaagtgg tagacaaaat tttattcaga cagatgtttc cattaatcaa gggaactcag
    14881 gtggtgcttt aattaatact gctggtgagc taataggtat taacactttg cgttttggga
    14941 aaaatacgaa tgaattgtca gagggcctaa attttgcgat tcccattaat ctggcgaatc
    15001 aaattatgag taagatcatt aaagatggcc gagttattcg tggctatttt ggggtaagta
    15061 cagatttgct tgacaccgca aaaatgcaag gttatgaaaa aggggtgatc attgttaatg
    15121 tagataaaaa tgggccagcc gcaaaagcgg ggattcaagc aggtgactta gtgcttaaag
    15181 tcggagatat tgaggcattc tctccttctc aaatgatgga agagcttgct gaaatgaaac
    15241 cttatactac agtaaaagta ttggttcaac gtgatgaaca attacttaac tttgatgtaa
    15301 ctattactga gttacagact caatagggta gaaaatgaaa aaaatagtga ttacagttga
    15361 tgggccgagt ggtgcaggta aaggaacgtt atgtcatgca ttggctgaaa aattagggtt
    15421 tgatttttta gattctggag ccttataccg gattactgca ttaagcgcaa ttaaaaaaga
    15481 ggttcccctt gatgatgagg aaaaactagc ggaagttggg cgtaatcttg atattcaatt
    15541 tttgccagaa aatggcgaga ttcaggtgat tttggaagga gaaaatgtag gcgacttaat
    15601 ccgaacggca gaagcaggtc aaaatgcctc taaagtcgct gctttccctt tggtacgtga
    15661 agcactttta gaacgccaaa gagcctttag tagcgaaaaa ggtctgattg cagatggacg
    15721 agatatgggg acagttgtgt ttcctgatgc acaaattaag ctgtttttag atgcaagtgc
    15781 cgaagaacgc acaaaaagac gtgtaaaaca gttgcaagaa aagggattta atgctaactt
    15841 tgacgagatt ttagccgaga taaaagaacg tgattttcgc gatagaaatc gatcagtcgc
    15901 gccacttgtt ccggctaaag atgcgttgct gttagattca acgcatttat caattgaaga
    15961 tgtgattaac caagcattaa atcatatcgc tcaatacatt aaattttagt ttgttgcttc
    16021 acataggatt tgtgtagctt ttattatcaa ccccgtttaa caggacgtta gatggatgtt
    16081 tatttttaag aagatttatt atgtcagaat tatcgtttgc tcaactactt gaagaatcat
    16141 ttgcagctac accacgttta ggtgatgttg ttaaaggtac tgttgttgct atccaaaaag
    16201 gcttagttat tgttgataca ggtttcaaat ctgaatctgc aatcgatgcc tcagaattta
    16261 ctaacgcaca aggtgaatta gaagttcaag tgggtgatga agtagatgtt gttcttaaaa
    16321 ctgtagaaga cggttttggt gcaacagtag tttctcgtgg tgatgcaaaa cgtaacgaag
    16381 cttggattgc tttagagaaa gcatttgaag aacaagctac agttatcggt ttcgtaaatg
    16441 gtaaagtaaa aggcggtttc actgttgaat taaacggtgt tcgtgcattc ttacctggtt
    16501 cattagttga tactcgtccg gttcgtgatt ctttaaacct agaaggtaaa gagtacgaat
    16561 tcaaagtaat caaattagat caaaaacgta acaacgtagt agtatctcgt cgtgctgtta
    16621 tcgaaacaga aagcaaccaa gatcgtgatg cggtattagc aaacttagtt gaaggttctg
    16681 aagttaaagg tacagttaaa aacttaactg actacggtgc attcgtagat ttaggtggcg
    16741 ttgacggttt attacatatc acagatatgg cttggaaacg tgttaaacac ccaagtgaag
    16801 tggttaatgt aggcgatgaa gttactgtta aagtattaaa atttgacaaa gacaaaactc
    16861 gtgtatcatt aggcttaaaa caattaggtc aagatccttg ggctgtaatt gctgaaaacc
    16921 acccggtaaa cagcaaatta actggtaaag taactaactt aactgactac ggttgcttcg
    16981 ttgagatttt agacggtgtt gaaggtttag ttcacgtttc agaaatggat tggacaaaca
    17041 aaaacattca cccatctaaa gtggttaacg taggcgatgt agttgaagta atggtacttg
    17101 aagttgatga agaacgtcgt cgtatctcat taggtttaaa acaatgcaaa gcaaaccctt
    17161 gggaacaatt tgcggcaact cacagcaaaa atgataaagt atcaggtaaa atcaaatcaa
    17221 ttactgactt cggtattttc atcggtttag aaggtggtat tgacggttta gttcacttat
    17281 ctgacatttc ttggaatgtt tcaggtgaag aagcagttcg taactacaaa aaaggtgatg
    17341 aagtagaagc tgttgttcta caagttgatg cagtgaaaga gcgtatctct ttaggtatca
    17401 aacaattaga atctgatcct ttcacaaact ttgtagatgg tactaaaaaa ggtgcaatct
    17461 taacaggtaa agttgtagaa gttgatgcta aaggcgttaa agttgaattg gaaggtggcg
    17521 ttgaagcatt tattcgtgca aacgaagcaa ctgctgagcg tgtagaagac atcacttctg
    17581 ttatttctgt tggcgattca atcgaagcga aatacaccgg tgttgatcgt aaatctcgcg
    17641 tagttaactt atctgttcgt gcaaaaaacg aagctgaaga atcagcagca attgcacaag
    17701 tgaacaaaga ggaagttgtt gtacctaatg catttgctga agctttcaaa gcagctaaag
    17761 gcgaataatt agtatagact aatctaaaat gggtatgttt tgaacatacc catttaaact
    17821 tagaaatgcc attttgaata cttattttca taataaatga ttattcaaaa tagaattaat
    17881 ttttggtaga aataatatga ctaaatctga attaattgag agtttagcat ctaaaaatcc
    17941 aagtttacca attaaaatgg tggagcattg tgtaaaagag cttttagagc agttaacggc
    18001 tactttagaa gaaggtgaaa ggatagaagt aagaggattt ggtagttttt ctctacatta
    18061 tcggcagccg cgtttaggtc gcaatcccaa aacaggagaa agtgttcttt taggcgcgaa
    18121 atatgtacca cattttaaag ctggtaaaga tctaaaagag agagttgatc tgctttaagt
    18181 cttattaatt caataatcgt agtaaggaga ttatatgatt aagtatattt taggtatttt
    18241 aattgtgatt gcagttatta ttgtcgctgt tacgattgga gccaataatg atcaacttat
    18301 cacctttaac tatatttttg ctcagagtga attacgctta tcaacgttag ttgcgatttt
    18361 atttggctta ggattgattc ttggttggtt ggtaacgggt attttttact taaaaattaa
    18421 gtttcaaaac gttgctttaa atcgtcgtgt aaagcgccaa gctcagcaaa taactgaatt
    18481 aacgactcca aaggctgaat aatcaatgct tgaattattg ttccttttat tgcctattgc
    18541 agcactatat ggttggtata tgggacaacg tagtgcaaag aaggatcaag aaaccgctag
    18601 taataagttc tctcgtgagt atgttacggg gttaaatttt cttttatcta atcagcagga
    18661 aaaggcggtg gaccttttcc tctctatgtt acaaaaacaa gaatccgaaa atcatattgc
    18721 atctgaatcc caatttgaag cggagttaac cctaggtaat cttttccgtt caagaggtga
    18781 ggtagatcgt gccttacgta ttcaccaaac attagtgaat agccctcatt attcatttga
    18841 tcaaaaatta ttagcaaaac agcaattagc taaagacttt atggttgcag gtttctatga
    18901 ccgtgcagaa aattattaca tttcattagt tgatgaacct gagtttgcta aatattcttt
    18961 atctcagctt gctgttattt accaaaaaac cagagaatgg aaaaaagcga ttaatgttac
    19021 agaaaaacgg cttcgaatag agccggatgc agataaaata ccgctttcac atttttattg
    19081 tgaatatgcg caaggggtta aatttgatga taaagcggca tttattgaat cgttaaataa
    19141 agcgttagaa tattatcctc aatccacacg cgcttctata atattaggtg atttctattt
    19201 agaagaggga gaatatctaa gagcattaag ctatttcgaa cagattcttg tgcaagaccc
    19261 tgattatatt agcgaagtgc ttggacgaat taagcaaagc tatatggctc ttgaggactt
    19321 aaatggctat gagttatttc tcattcgagc aaaccgagta aaacataata gtagtgtaga
    19381 tattgcttta actgaattta ttgaagaaaa agatggtatc aatgctgcac attctaaact
    19441 ataccagcag ttgagtactt atccgaattt aattactttt caccgcttta ttcgctatca
    19501 agcagatttt gcggaggaag gaaatggtaa ggaaagctta gttttattac ataatatggt
    19561 gggaaatcag ataaaacgca gcttccaata tcgctgttta aattgtggtt atcaaagtta
    19621 tcgcttaatg tggcaatgtc cttcttgtaa tcaatgggaa aaaattaagc cggtacaaag
    19681 tatcgaaggt attattcaat aaagaaagaa tctgaggaat tgaaaatgaa caataaagta
    19741 attgttgcgt tagactatga aactgaacgt gaagcattag aatttgtgga tttggtcgat
    19801 ccgtcgcttt gtcgtttaaa agtaggcaaa gaaatgttta caaccttagg cacaaatttt
    19861 gtcaaacaat tacacgaacg taaatttgat gtattccttg atttaaaata tcatgatatt
    19921 ccaaatacgg ttgctcgagc agtacgttct gctgctgatc ttggtgtgtg gatggttgac
    19981 ttgcatgctt ctggtggttt agccatgatg gaagaggcaa agaaaatttt ggagccttat
    20041 ggcaaagagg caccattatt aattgcagtg acggttctaa ccagtatgga agatttggat
    20101 ttgcttcaaa taggtattaa tgcttcgccg atggaacaag ttattcgttt agcacattta
    20161 gcacaacggg ctggtttaga tggcgtggta tgttctccac aagaagttga ggtattacgt
    20221 acccattgtg gtcaagattt taaattagtg accccaggaa tccggccaaa aggaacagat
    20281 tttggggatc aacgccgagt gatgacaccc aaacaagcag tagaaacagg ctcagatttt
    20341 ttggttattg gtcgtcctat tacccaagct caagatccgc ttgcggtatt aaaatctatt
    20401 aaccaatcta tcagttaatt cattgcattt ttaatgaagg cggaaaaatt tccgcctttt
    20461 ttaatcaaac aagcggttat ttttgaggaa aaatttgtaa atgacattag tctattcaac
    20521 ggaaacaggc agaataaagt ccgaagtaat aaaagaagaa cgccctaaag gggatggtat
    20581 tgtgcgtatt caacgtcaaa caagcggtag aaaggggaaa ggtgtttgcc ttatcaccgg
    20641 tcttgattta gaggataaag ccttaaattc tcttgcttca gagcttaaac gtaaattggg
    20701 ttgtggtggc tcatttaaag atggagtaat tgaaatccag ggcgataatc gaggattcat
    20761 taagcaaatc ttagaacaga aaggtttcaa agtgaaactg gcaggtggtt gagttttaaa
    20821 caattatcag ctggcagttt ttaaataact tcattttatt tgaaacttca ttcctacttt
    20881 tctgcctaaa actcacgatt aaggagaaaa actaatgtgg aagaaaacgt tgattgctgt
    20941 atttttagca agccaatatg cttttgcggt aggaaccggg aaagaaccat caaaaagtta
    21001 tactgaaaca gaattaaaac aattaaaaaa tgattggtta gcgatttatc aaaaagagct
    21061 acagtatgca gaaaatttgc gtttaaaaca gagagaaaat tttcagcaaa ttaattattt
    21121 ggcagatgca gcgattagtc agaagaattt atcactttca acggagcaga taattcagcg
    21181 tttattacta accttagcgg gttatccgtt ggagatgaaa gctgaatgga agctgctaaa
    21241 tgctaaaata acgttaaaac aagccacaga aagtgaagtt aaagcattta tttcaaaata
    21301 tcctgattct ttgtatcaaa ggcagttaca gaacttgatg tttgagctgc tctatcgtga
    21361 acagaaattt ccggagttac tggaatatgc tcaaaatgta aaacagagta gtcttgccga
    21421 ccaatgccgt ttattttctg ctcgttatga actggcagca agtaaagctc aaatcaatcc
    21481 ggaagtttct caagtaactg agcaaaaagc agaaaatgca gaactgcttg ctttggtgca
    21541 agagtttgat cgcttttggc ttgctacgcc gaaattaact tctgattgtg cgaatttaga
    21601 aagttattgg cgggatcagg ggcttaaaac cgatgaaaaa atgcgtttga aagcggtcga
    21661 attaattaaa caaaatgcaa atgcagaatt ggcgaatttg gcggcaaatg taaataatga
    21721 gaatttgaaa atctggctat cttccgttga aaaggtagcg aataatccgg cagatttgca
    21781 aaattttatc gaaaatcaac cgcttgattc cccattttat gctgataata aagcgattat
    21841 tcagcaactc tttgctaaat atgtgcgaac tttatcggaa aatatggaga acccgagttt
    21901 ccagcagtat caaacgtggg cagagaagta tcaactttcc agcgaggaaa tcaatggctg
    21961 gaaaaatgct tttatcactc gattttttga taacccagaa ccaacattcc aattttggcg
    22021 tgatgagcaa atcaagttgc tcaagacaga caatttaact gaacgccgtt tacgaatggc
    22081 aatttggcaa aaagcagatt taaatgagtg gctggttctg ctatctcagc aggcgaaaga
    22141 aaaagcagaa tggcgttatt gggctgcgaa agaggagaaa aacgaagcga agcgtaaagt
    22201 tgattttgaa agcttagcta aagagagagg cttttatgct atgttggctg ctcaacaatt
    22261 aggcattgtt taccaaatcc cgatgcttga agtgcctgaa ttgacacaag cacagcttga
    22321 attgtatgca aaccaattag ctcgtattca agagttgcga gagctagggc agtttgacca
    22381 ggcaagaaaa atatggattg actggataaa aaacatcaag ccggaagcag gtgaaaatac
    22441 accaactaaa atccagttag ccctgataaa atatgccaag gataaaaatt ggtatgattt
    22501 ggcggtggaa ggtacaattc aaacaaaagc ctttgattat cttgatttgc gattaccgaa
    22561 tgcctattcg gattggttcg atttacatct gcaagataaa aaaatcagca aaacgtttgc
    22621 tcaggcgatt gctcgtcaag aaagtgcgtg gaatgctcag gctcaatcgc acgctaatgc
    22681 gagagggcta atgcaactgt taccgacaac agcacaaaaa accgctaaag ataacggttt
    22741 aaccttcaaa gatggcaatg atctctttca accgtttaac aatattatgt taggcacaac
    22801 ccatttaatg gagttaaacg aaaaatatcc gaataatcgg attctgattg cctctgctta
    22861 taatgcagga gcagggcgtg ttgagcagtg gctgaaacgt agtaacgggc agttagcaat
    22921 ggatgaattt attgccagta tcccgtttta tgaaaccaga ggctatgtac aaaatgtgct
    22981 ggcgtatgac tactattatc aaatgctcta tagcgatata aatgataaaa atggattaaa
    23041 aatgttctat caagaggaat taacaagaaa atattaaaaa atgcttgtgt ttttgtgtag
    23101 aaccgctata atgcacc
//
LOCUS       DANMGB010000017        22893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.017, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000017 DANMGB010000000
VERSION     DANMGB010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.017"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            63..656
                     /gene="hisH"
                     /locus_tag="PXG19_000515"
     CDS             63..656
                     /gene="hisH"
                     /locus_tag="PXG19_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL6065845.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
     gene            755..1600
                     /locus_tag="PXG19_000516"
     CDS             755..1600
                     /locus_tag="PXG19_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL6065846.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            1770..2519
                     /gene="hisA"
                     /locus_tag="PXG19_000517"
     CDS             1770..2519
                     /gene="hisA"
                     /locus_tag="PXG19_000517"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL6065847.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            2501..3274
                     /gene="hisF"
                     /locus_tag="PXG19_000518"
     CDS             2501..3274
                     /gene="hisF"
                     /locus_tag="PXG19_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL6065848.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            3271..3657
                     /locus_tag="PXG19_000519"
     CDS             3271..3657
                     /locus_tag="PXG19_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6065849.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            3685..4323
                     /locus_tag="PXG19_000520"
     CDS             3685..4323
                     /locus_tag="PXG19_000520"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL6065850.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(4397..5290)
                     /gene="hslO"
                     /locus_tag="PXG19_000521"
     CDS             complement(4397..5290)
                     /gene="hslO"
                     /locus_tag="PXG19_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL6065851.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(5534..5950)
                     /gene="hslR"
                     /locus_tag="PXG19_000522"
     CDS             complement(5534..5950)
                     /gene="hslR"
                     /locus_tag="PXG19_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL6065852.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            6038..6580
                     /gene="nudE"
                     /locus_tag="PXG19_000523"
     CDS             6038..6580
                     /gene="nudE"
                     /locus_tag="PXG19_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL6065853.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            6594..7412
                     /gene="cysQ"
                     /locus_tag="PXG19_000524"
     CDS             6594..7412
                     /gene="cysQ"
                     /locus_tag="PXG19_000524"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL6065854.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            7487..8974
                     /locus_tag="PXG19_000525"
     CDS             7487..8974
                     /locus_tag="PXG19_000525"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL6065855.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            9114..9812
                     /gene="pgl"
                     /locus_tag="PXG19_000526"
     CDS             9114..9812
                     /gene="pgl"
                     /locus_tag="PXG19_000526"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL6065856.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            9988..10875
                     /locus_tag="PXG19_000527"
     CDS             9988..10875
                     /locus_tag="PXG19_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL6065857.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            10885..11574
                     /locus_tag="PXG19_000528"
     CDS             10885..11574
                     /locus_tag="PXG19_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL6065858.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            11657..13111
                     /gene="gnd"
                     /locus_tag="PXG19_000529"
     CDS             11657..13111
                     /gene="gnd"
                     /locus_tag="PXG19_000529"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL6065859.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            13246..13839
                     /locus_tag="PXG19_000530"
     CDS             13246..13839
                     /locus_tag="PXG19_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6065860.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(13910..16774)
                     /locus_tag="PXG19_000531"
     CDS             complement(13910..16774)
                     /locus_tag="PXG19_000531"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL6065861.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(16891..17589)
                     /locus_tag="PXG19_000532"
     CDS             complement(16891..17589)
                     /locus_tag="PXG19_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065862.1"
                     /translation="MKQNRKKSKKVIGTHKKENGLKQFIKNNKIPIILISAIWSIFTT
                     DILERIANMPIIWKNFEENYLYNKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMV
                     NKDDNSILGEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELS
                     TFKIKEINSNLGTLTLTTQEDKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLW
                     EKRRKMQEEQKIPN"
     gene            complement(17834..18427)
                     /locus_tag="PXG19_000533"
     CDS             complement(17834..18427)
                     /locus_tag="PXG19_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065863.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(18417..18587)
                     /locus_tag="PXG19_000534"
     CDS             complement(18417..18587)
                     /locus_tag="PXG19_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065864.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(18589..19330)
                     /locus_tag="PXG19_000535"
                     /pseudo
     CDS             complement(18589..19330)
                     /locus_tag="PXG19_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(19327..19770)
                     /locus_tag="PXG19_000536"
     CDS             complement(19327..19770)
                     /locus_tag="PXG19_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6065865.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(19764..20201)
                     /locus_tag="PXG19_000537"
     CDS             complement(19764..20201)
                     /locus_tag="PXG19_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL6065866.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            20440..20883
                     /gene="lysM"
                     /locus_tag="PXG19_000538"
     CDS             20440..20883
                     /gene="lysM"
                     /locus_tag="PXG19_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL6065867.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(20937..21788)
                     /locus_tag="PXG19_000539"
     CDS             complement(20937..21788)
                     /locus_tag="PXG19_000539"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL6065868.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            21881..22432
                     /locus_tag="PXG19_000540"
     CDS             21881..22432
                     /locus_tag="PXG19_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065869.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            22641..22735
                     /locus_tag="PXG19_000541"
     tRNA            22641..22735
                     /locus_tag="PXG19_000541"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22676..22678,aa:Ser,seq:gct)
     gene            22749..22825
                     /locus_tag="PXG19_000542"
     tRNA            22749..22825
                     /locus_tag="PXG19_000542"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22783..22785,aa:Arg,seq:acg)
BASE COUNT         6550 a         4654 c         5083 g         6606 t
ORIGIN      
        1 ggaaacagat atattgagtc aattttactt cactataaga aatacttaac tcaggaaact
       61 aaatgaccaa cctcaccatc atcgacacag gctgtgccaa cctgtcttcg gtcaaatttg
      121 cttttgaccg tcttggcatt cgggctgaga tctcgcgaga tctcaacaaa atccaatctg
      181 ccgataaatt gctactcccc ggtgtgggaa cagcagcggc ggcgatggcg atcttgcacg
      241 atcgccgact tatcgacacc attcgcaacg ccacccagcc gatgcttggc atctgcttag
      301 gaatgcagtt aatgacggac ttttcccacg aaggcgatgt ggcaacactg aacttaatga
      361 gtggcaaaac cgaacgcttg cctgaatgcg gtttgccgtt gccgcatatg ggctggaaca
      421 aggtgcaata ccaagccgac catccgctat ttcacgacat tgagcaaggc aatcatttct
      481 attttgtgca tagctacggt gtgctaccga atgagaacac catcgccacc tgcgactacg
      541 gcgtgccgtt ttccgctgcc attgccagcc aaaacttcta cggcgtacag ttccaccccg
      601 agcgttcggg cgaggctggg gcgaagttgc tcaggaattt tgtggagaat gtctgatttt
      661 gtgatctcga tcgaaaagtt tgaaaatagg gcttgatttc tcgctttatt tcgacaaaat
      721 tactgttaat ttaaccagtg aaagaaggtg agaaatgaac gaaattaaac tatttgaaaa
      781 cagccaaatc cgctcggtgt gggatagcga aaaagaagag tggtttttct cggtggtgga
      841 cattatcgag gtgctgacgc aaagtagcaa tccacgccgt tattggagtg atttaaagcg
      901 gaaaatcaag gacgaagagg gcggaattga actgtacgaa aaaatcgtac agttgaaatt
      961 aaaagcccca gacggaaaaa tgcgggaaac cgatgccacg gatttacaag gcattttccg
     1021 tattattcag tctgtgccaa gcccgaaagc cgagccgttg aaaatgtggc tggcagaggt
     1081 aggcaaagag cggattgatg agattatcga tcctgaattg accattgacc gagctttggc
     1141 tacttacttg aaaaagggat attcccgtga gtggattaac caacgcttgc aagccattca
     1201 ggtgcgaaaa gaactgacgg atacttggca agatcacggt gtgcaagtgg gcagagaatt
     1261 tgcgattctc accaatgaaa tcacacaggc gtggagcggt atgactactc gccaatataa
     1321 ggatttcaaa gggctgaaaa aggaaagtct gcgagacaat atgacgacca ccgagttggt
     1381 gctgaatatg cttgctgagg ctgccaccaa agacatcgct caaatcagcc acccacaggg
     1441 cttggaagaa aataaaaccg ttgccaaacg gggcggaaat gttgcaaaag tggctcggga
     1501 aagtttggag gcagagaccg gcaaaccggt gattacgcaa caaaatgcga ttgatttcgc
     1561 tgcggtgatt gaacaagtgg cgaaacaggt gaagaaataa gtgcggtcgg ttttttgcaa
     1621 gtttttggaa gaatttgacc gcttgtaccc catacgagcc gtatggggct agataaacca
     1681 agctactccg tagcttagag aggcagtcgc agcgcgactg ggattattca gcctagcacg
     1741 gctcgtgcta ggcacacagg aacaataata tgcaaaaatc catcattatc cccgccctcg
     1801 accttatcga tgggcaagta gttcgcctac atcagggcga ttatgcgaaa cagacgactt
     1861 atgccgatga cccgattgcc caatttgccg actacttggc acaaggggcg gagcagttac
     1921 atttggtcga tcttacaggg gcgaaaaatc cggctcaaag acagaccgca cttatcggca
     1981 aaattattcg tgaaacccac tgcaaaattc aagtgggcgg cggtatccgc accgagcagg
     2041 atgtggcgga tttacttgct gttggagcaa accgtgtggt gattggttcg actgcggtaa
     2101 aagagcgtga aatggttaaa ggctggttca aaaagtacgg tgcggagaaa tttgtgctgg
     2161 cactggatgt gaacattgat gcaatcggtc aaaaaatcat tgcgatgagc ggctggcaag
     2221 aggcaagtgg tgtgtcgctc gaggagttga ttgaagatta tcaaaccgtg ggcttgcaac
     2281 acgttttatg caccgacatt tcccgagacg gcacgctggc aggttcaaat gtagatctct
     2341 atcgagaaat ctgtgccaaa tacccagaga ttcaatttca gtcctcaggc ggtatcggct
     2401 cgcttgccga catcaaagcg ctttgtggta cgggcgtggc tggcgtgatt gtcggtcgtg
     2461 cgttgttgga aggtaaattt aatgtagcgg aggcaatcga atgttggcaa aacggataat
     2521 tccttgttta gacgtgcgtg acgggcaagt tgtgaaaggc gtgcagttcc gcaaccacga
     2581 aatcatcggc gacattgtgc cactcgccca gcgttatgcc caagaggggg cggatgagtt
     2641 ggtgttttac gatattaccg cctcaagtga cagcagaacg gtggataaaa gctgggtgga
     2701 acgtgtggca caggtgattg atattccgtt ctgtgtggca ggcggaatca aaaccattgc
     2761 cgatgcggag cagattttcg ctttcggagc ggacaaaatc tccatcaatt ccccagccct
     2821 tgccaacccc gagctgatta ccgaactggc aaagcgcttt ggcgtgcagg cggtggtggt
     2881 tggtattgat agctggttcg aggcagaaac cggcaaatat tgggtcaatc aatataccgg
     2941 cgatgaaaaa cgcacccgcc aaaccgaatg gcaattgttg gattgggtgg aggaagtgca
     3001 aaagcgagga gcaggcgaaa tcgtgctgaa tatgatgaac caagacggcg tacgcaacgg
     3061 ctacgatttg gtgcaactga aaaaagtgcg tgaagtttgc caagtcccac tcatcgcctc
     3121 aggcggtgca ggcgaaatgg tgcatttccg tgatgctttt attgaggcaa atgtggatgg
     3181 tgcgttggca gcgagtgtgt ttcataaaca aattatcaat attggggagt tgaaggaata
     3241 tttggcgaag gaaggggttg aggtgcgtag atgattaaga ttactgcctt agatcatctg
     3301 gttttaaccg ttgccgatat gcaaaaaacc attgattttt atacgaccat tttgggtatg
     3361 caagaaatca cctttggcga taatcgcaaa gcgcttttgt ttggcacaca gaaaatcaac
     3421 ctccaccaaa aaggtgcaga aatcctaccc aatgcccaaa atgccgattg tggcacggca
     3481 gatttatgcc tcttaacggt aactccactt caggaggtta tctatgtgtt acagcgacat
     3541 caggtggaga ttttggaagg tgggattgtg cctcgtacgg gggcagtggg aaaaattgag
     3601 tcggtttatt gccgtgaccc tgatggtaat ttgattgaaa taagcctata tgtctaaaca
     3661 agcggtcaaa aaaaggaaga aaaaatgcaa aataaaatag actggcaaaa agtggacggc
     3721 ttactgcccg ttatcgtcca aaacgcccaa acctgcgaag tactgatgtt aggatatatg
     3781 aaccaacaag ccctcgaaaa aacgctggct gaaaagcgag tgacttttta ctcccgtact
     3841 aaacaacggc tgtggacgaa aggcgaaacc tcgggcaatt tcctaaacgt ggtggatatg
     3901 agtttggatt gtgataacga caccctgtta atcctcgcta accctatcgg cgaaacctgc
     3961 catacggggg cggagagctg ttttcatcag tttgaacaag aacaaccaga ttggatcttt
     4021 ttcagcaaat tagaacgaat gatagccgaa cgtaaaaatg ctgatccgga aagttcttat
     4081 accgctaaac tttacgccaa aggcacgcca aaaatcgtcc aaaaagtagg ggaagaggca
     4141 gtagaaagcg tgattgcggc aatgaaaaat gatcgggaag agttggtcgg tgaagtggct
     4201 gatctgatgt atcacttaac ggtgttattg cacaatgccg atctctcgtg ggcagagatc
     4261 aatgctaaac taaaagaacg ccacaaaggg attgggttac acccagaagg ctcaaataag
     4321 taaaatgcaa gcggtcaaat ttcaccgttt ttttacaaat tgcaaaaaag acaagaaact
     4381 tgaccgcttg tttagcttaa tttaacccta acttacttaa tttttcagtt tcttccttaa
     4441 agccttcaat cgccgctttg tcaaagaaat attgtgtccc gcagcattca cattgcatat
     4501 cgatcacgcc ttgtttttcc tccaacattt cttcgatttc ttctgccggc accagtaata
     4561 atgcggagcc tgaacgctct cttgagcagc cacatttaaa ttcagtatct tgtggtgggt
     4621 aaacttctac ttgctcttcg tggtagaggc gatagagcaa ttcttctgcc tctaaaccaa
     4681 ataactcttc atcttttacg gtttcagtga gcgtggctaa atgctcaaaa tcatctcttg
     4741 agcctgtgcc gtccggcata atttgtagca acataccgcc tgccactgct ttgccttcaa
     4801 attcgcctgt gcggataacg aggtgggttt gtaattgctc ggagcgggcg aagtaatctt
     4861 ctaaacattc acgaatggtt ggtttatcga gagcaatcac cccttgataa cgttcaccat
     4921 cggttgggat aatagaaatc actaatacac cattgccgat catttccgct aacgaggctg
     4981 tgtctgcaat atctgcctga acacgggcta aagcacggag ttgctgttgg tcgttaccgt
     5041 tcacaaccgc caattttaac gggctgtcac cttgaatctg cacagtaatg ttgccgttaa
     5101 atttcattgt tgcagtcagc aaactggttg cgactaacat ttctccgagt aaattttgta
     5161 ctgctttagg gtagtgatgg gtgtttaagg tctcggtaaa ggtgttgttt aaacgcaccc
     5221 attcgccccg taccgctcgg tctttgaata aatagcggta gagtttgtca ttgtctttgg
     5281 tgtaattcat tttgattcct cgttgcaagc ggtcgattat tactcacaaa attatttcta
     5341 attttgttcg ctcctacgga gccgttggca aagccaacgt tcaaaatgca ttgcattttg
     5401 tggctaaaaa tgtgcaaatc gaacgctgta ggggcgaatc aatgttcgcc cgaaataatt
     5461 atataggggc gaaaaatttt tcgcccctac ttaggatatt caatataggg attatttttc
     5521 tgattgcaag ggcttagcta aattcttgct ctttgaattt gattaaatcc cgccgttctt
     5581 ttttgtttgg acggcgatca gggtgtggca ttgaaagagc attcgctttg cgggcaaatg
     5641 ccattgcctc acggtgttta atgctttttt cggtttcact gtagagcagt tgggcttccg
     5701 gagcccctcg gcgttggtca ctgagggcta acacttccac ctctttttct tcattgcctt
     5761 ggcgaagttt gatgatggca ccgatctcca ccgctttgct aactttagct ctttgcccat
     5821 tataatggac tttaccccct tcaatcattg ctttggcaat cgaacgggtt ttataaaaac
     5881 gagccgccca aagccattta tctagccgaa cttcggcgtc gttttgttct ttttcgtgtt
     5941 tatttttcat tttctgcctt aaaatcaaaa caatagtcga aatattagag cgaaagtgag
     6001 atttttcaac taaaataact caaaaaggtg agataaaatg ataaaacaac ttcctgaaat
     6061 tttgaacatt aaaacagtag cgaaatctcg catttttgag gtgcaagcgg tcgatttacg
     6121 cttttctaat ggcgaagagc gaacttacga acgacttacg ccgaatcgcc gttcttcggt
     6181 aatggtgatt ccgattcaaa acaacgagct gatttttgtg aaagagtatg cggtcggctc
     6241 ggagcgttac gagctgggtt ttccgaaagg cattgtggat gcaggtgaag agccgattga
     6301 gagtgcgaac cgtgaattac aagaagaaat tggttttggg gcgaaaaaat tagattttct
     6361 gcggtcgctt tacagttcgc caagccatat gtacggctta atgcacctgt ttttggcaca
     6421 agatctgtac ccatcaaaat tggaaggcga tgagcctgaa ccgctggaaa ttgtgcgtta
     6481 tccgttggat aaaattgatc aattattggc agatcctgat tttgccgaag cacggaattt
     6541 gtccgctcta tttatgctac gagaatactt aaaaaaatag gcaaggagct attatgcaaa
     6601 cgctaactca acccctactc gagaatatta tcaatattgc caaagcagcc ggtgagcagt
     6661 taaagcagct ttatgcccgc tcggtggcaa ttaaaatcaa agccgattgc acaccggtga
     6721 cggaagcgga tctgattatc agccaatttt taactgaacg cttgaagcaa ctcacaccag
     6781 atattccggt attatcggaa gagttttgcg atattccgtt tgccgaacgc caacaatggc
     6841 aagaatattg gattatcgac ccgattgacg gcacacaaca gtttattaac cgcaccggtc
     6901 aattttcagt ggtgattgcg ttagtgcaaa aacgtgaggg tagaaatcag ccggtgctgg
     6961 gcgttattca tgctccgata ttaggaaaaa cctattttag tatggaaggt agcggtagct
     7021 ttttgcaaga aaatggagaa attcgaccgc ttgtcaaacc gaaacgtgcg gagaatgccc
     7081 ttttgattgt taccgtaggc agcgatttac atgcagaaca agctaaaaat gccatttcag
     7141 ccccacaaat tgagtgtgta aaatatggtt cgggcagtct aaaagccggt ttagtggcag
     7201 aagggaaagc cgattgttat atccgttttg gtgacaccgg cgaatgggat actgctgtgg
     7261 cagaagtgct gttaagtgaa atgggcggca aaattttcga ctttaatttt tcgccgctga
     7321 cttataatca gcgagaaagt ttgattaatc cttattttgt gatggtggct gacggctcga
     7381 tagattggga taaaatattt ttattcaaat aggtagttcc gattagcaat ttttatgata
     7441 atcttgcacc caacaaaatt ttaacaatta gcaataggat aaataaatga atgctgaaaa
     7501 tagctgtatc gtcatttttg gtgcttccgg tgacttaact tttcgtaaat taattcctgc
     7561 tctttataac ttatataaga ttggcagatt gggcgagcat ttttccgtcc taggtgtttc
     7621 tcgttcagaa ttaaccgacg aatctttccg ccaaaaaatg cgtgatgcgt tagtcaaatt
     7681 tgaaaaagca agcggtgaag aattagataa attttgcgaa catctttatt accaagctgt
     7741 aaatacctct gatgcagtgg attatgccaa gttgctgcct cgtcttgatg agctacacga
     7801 taaatatcaa acagccggta acacgcttta ttacctctcc acgccaccaa gtttatatgg
     7861 cgtgattccg gaatgtttag ccgctcacgg cttaactacc gaagagtttg gctggaaacg
     7921 gattattgtt gaaaaaccat tcggctacga tatcgaaacc gccaaaaaat tagacgtaca
     7981 aatccacaaa tgctttgaag agcatcaaat ctaccgtatc gaccactatt taggtaaaga
     8041 aacggtacaa aacttactcg ttttacgttt ttctaacggc ttatttgaac cgctttggaa
     8101 ccgtaatttt attgattatg tggaaattac cggggcagaa tccatcggcg ttgaagatcg
     8161 tggcggttac tatgatggct cgggggcaat gcgtgatatg ttccaaaacc acttattgca
     8221 agtattagcc atggttgcaa tggagccacc ggcaattatt aatgctaatt caatgcgtga
     8281 tgaagtcgca aaagtgctat attgcttgca tccgttaact gaagaagacg ttaaacacaa
     8341 tgtggtgtta ggtcagtatg ctcgtggcac ggtagacggc aaagaagtgc cggcttactt
     8401 ggaagaaaaa ggcgtgccgg ctgattccaa cactgaaacc tttatggcgg taaaatgtaa
     8461 aatcgataac tggcgttggg caggtgtgcc gttctatgtg cgaaccggta aacgcttacc
     8521 aacccgtgtg acggaaatcg taattcattt taaaactaca ccacacccgg tatttagcca
     8581 aaatgctccg gaaaataaat tgattattcg tgtgcaaccg gacgaaggca tttcaatgcg
     8641 tttcggcttg aaaaaaccgg gagcaggctt tgaagcgaaa gaagtctcaa tggatttccg
     8701 ctattctgat ttaagttcat catcaagctt actcaccgct tatgaacgct tactattaga
     8761 cgcacttaaa ggtgatgcaa ccttatttgc ccgtactgat gctgtacacg cttgttggaa
     8821 atttgtgcaa ccgattttag cctacaaagc taatcgtggg cgtgtgtatg aatatgaatc
     8881 cggcacttgg gggccaaccg aggcagataa attaatcgcc agacacggca aagtatggcg
     8941 aaaaccgtcc ggtacaatga agaagaaagt gtaaatttca gttcccctct ttagcaaaga
     9001 ggggctaggg gagatttggc agaagttata tacgctcata cgaaatattg aaatcgtaat
     9061 caaatctccc cctcccctct tttctaaaga ggggtgatct aacgaggcaa attatgaata
     9121 aagttatttt ccccaccgcc caagctgcgg ttgaacaaat tgctaaagag tttattgaat
     9181 acagccatca aaaccgcccg gtgcatattt ccctttccgg tggttcaacc cccaaattat
     9241 tattcaaaac cttagctcaa gcaccgttta ataccgaaat tcaatggcaa aacctgcatt
     9301 tctggtgggg ggatgatcga atggttgccc caaccgatcc cgaaagtaac tacggcgaag
     9361 tgcagaaatt actgttcgat cacatcgaca ttccaagcga aaatattcac cgcattcgtg
     9421 gtgaagagaa tgtagaacaa gaacttgcaa gattttcggc agaattgacc gcttgtgtgc
     9481 cgaacttggc gtttgattgg attattttag gaatgggaac agacgggcat accgcctcac
     9541 tgttcccaca tcaaacagat tttaatgatc agaacgttgc cgtgatcgcc aaatacccag
     9601 aaacagggca gatccgcatt tccaaaacgg catctttaat tgaaaaagcc aaacggatca
     9661 cttacttggt cacaggagca agcaaagcgg aaattttaaa agaaatccaa accactccgg
     9721 cagaaaattt accttatcct gccgccaaaa ttcaggcgga aaatggggta acggaatggt
     9781 atttggatag tgaggcggct aacttactct aggtcacaat cagtgacctt tacaagcggt
     9841 taaattttag aaaaatgttg caaagtattt ttgtgatatt catcgaaaaa gcagaaaaat
     9901 ctgctcgtgg tataggccaa aaattggcat agtctttctt attttgagat cacaaaagtg
     9961 atcttcactg aagaataagg aagaaagatg aatccaattc aattaattga accaaacatt
    10021 aactctaaaa tttttactat tcgtggcgag caagtaatgc tagatgttca tttggcagag
    10081 ctttatcagg tagatactcg aacctttaac caagcagtaa aacggaatga agagcgattt
    10141 cctgacatat ttcgttttca attaacagaa aacgaatggc tatctttaag atcacaattt
    10201 gtgatcttaa acgaaaatag tgggcgtggc caacatagga aatatcttcc ttatgtcttt
    10261 accgagcaag gcattgcaat gctttcggca gtattgcgta gtgaagttgc ggtgcaagtt
    10321 agcattaaga ttatgcaagc ctttgtgcaa atgcgtcatc ttttgcaaac aaatagtggt
    10381 ttggtacaac gcttagaaag tgtagagcgt aaacagttgg agatgtctgg gcagttagag
    10441 caggtgtttc aatctcttga aggcaataag cctaaaatgc aaggggtttt ctttgaaggt
    10501 gaaaccttta acgcttatca gtttgttacg gaattagtga gaggtgcaaa atcatcgctg
    10561 attttaattg ataactatgt agatgatacc gttttaactt tatttacgaa acgatcgcat
    10621 aacgtatcag ttacgattta tacgaaacaa atatctaagc aacttgcatt agatttggaa
    10681 aaatataaca gccaatatgc tcacattaat gtgaaaatat ttgataaatc tcacgagcga
    10741 tttttgatta ttgatgaaaa agagctttat catatcggtg catcacttaa agatttaggt
    10801 aagaaatggt tcgctttttc taaaatggat ttatcaatga gccgcatttt agaaaagtta
    10861 gcggaaaatc aataaggtat attaatgaaa acactcggca ttttaggtgg aatgagtgcg
    10921 gaaagcacgg tttcttatta tttagatatt aatcgctcgg tgaataaagt attaggtgga
    10981 aatagcagtg ccaagatttt aatttcgagt gtcaattttg aagagattgt acaatgccaa
    11041 aagcagggaa attggcaagc agccgctgaa attttatctg aacaagctag attgctagaa
    11101 caagccggag cagaaggcat tttattggca accaacacaa tgcacaaaat tgccgatcaa
    11161 attagtagcc atatctctgt gccgtttttg catattttgg actgtgtggc tgaggcgatt
    11221 tcagctcaag gtctgcagaa agtagcactc cttggcacaa aatttactat gagtgataat
    11281 ttttacaaag acggtttatt ggagcgtggt atcacatcaa tagtaccaga tgaggaaacg
    11341 caacaagaaa ttcatcgcat tattttcgag gaactctgtt taggcaagat tactgaaagt
    11401 gccaaagcgt tttatcttca gactattcaa caacttagtg aacaaggtgc agaaggtgtg
    11461 attttaggtt gtaccgaaat cgggttgctg attaaccaaa acgacaatcc gttaccgttt
    11521 ttcgatacag cagcattaca cagccaaatg gcggtggagt ttattttagg ttaataaatg
    11581 ttacaagcgg tcaaatttgc aaaaaatttt accaattcga ccgcttgcat agaatcaaaa
    11641 acaataggag caaacaatgt cacaaaaagg cgatatcggc gtgattggac tcgccgtaat
    11701 gggtcaaaat ttaattttga atatgaatga caacggcttt aaagtggtgg cgtacaaccg
    11761 cactacttca aaagtggatg agttcttaga aggtgcggcg aaaggcacga acattatcgg
    11821 tgcttactcg ttagaagatt tagcggcgaa gttggaaaaa ccgcgtaaag tgatgctaat
    11881 ggtgcgtgcc ggtgaggtgg tggatcagtt tatcgaggct cttctgccac atttagaaga
    11941 aggcgacatc atcattgatg gcggtaactc aaactatccg gacaccaacc gccgtgtgaa
    12001 agcgttagcg gaaaaaggca ttcgctttat cggctcaggt gtatcgggcg gcgaagaggg
    12061 tgctcgtcac gggccgtcaa ttatgccggg cggtgatgaa tctgcgtggc aatatgtgaa
    12121 gccgattttc caagcaattt cagccaaaac cgacaaaggt gagccttgtt gtgactgggt
    12181 tggtcgtgac ggagcagggc attttgtgaa aatggttcac aacggtatcg aatatggcga
    12241 tatgcagtta atttgtgaag cctaccaatt cttaaaagat ggtttaggtt taagctatga
    12301 tgaaatgcac gaaatcttta aagagtggaa aaacaccgaa ttagacagct atttggtgga
    12361 tattaccact gatattcttg cctacaaaga cgaagacggc gagccattgg tagagaaaat
    12421 tctcgacacc gcaggtcaaa aaggaacggg taaatggact ggtattaacg cccttgattt
    12481 cggcattcca ttaacactga ttaccgagtc ggtattcgcc cgttgcgtat ctgcgtttaa
    12541 agatcaacgt gttgcggctt caagattgtt taacaaagaa attggtaaag ttgaaggcga
    12601 caaaaaagta tgggtagaag cggtacgccg tgcgttactt gcttccaaaa tcatctctta
    12661 tgcacaaggc tttatgttga ttcgtgaggc ttctgagcaa ttcggttggg acatcaacta
    12721 cggcaatacc gccctattat ggcgtgaagg ttgtattatc cgcagccgtt tcttaggcaa
    12781 cattcgtgat gcgtatgaag ccaacccata tttagtgttc ttaggctcag acccatactt
    12841 caaagatatt ttggaaaact gcttggcaga ttggcgtaaa gtagtggcaa aatcggtgga
    12901 aatcggttta cctgtacctt gtatggcgtc agccattacc ttcttagatg gctacacctc
    12961 ggcacgttta ccggcaaact tactccaagc acaacgtgac tactttggtg ctcatactta
    13021 tgagcgtaca gacaaagctc gcggtgagtt cttccacacc aactggacag gacgtggcgg
    13081 taataccgca tcgaccactt atgatgtgta attaatcttt ttgagccact taattcgata
    13141 ttaagtggct tttttattgg atttttcttc aaaatatctt ggagtgaatg tttacaagtt
    13201 tgtataataa tggagcgatt tttcatttat atttaaggag aacctatgct taccgatcaa
    13261 gatattttta atcgctacca aacaaaaaaa tcagaatttg aaaaacaggc agatatttcc
    13321 cttattgggc attccctgtt tgatatgtgg ggcgatatgg aaaacggcac gccgaattta
    13381 gcaggaaaaa cagttgccaa tttgggctta tcaggcacca gcacccgcca atatttggat
    13441 gtgattaccc gacaagagcg aattcaacac gttggcgata atgtatttat ttttctaggc
    13501 gttaatgaca ttgtaaaaga gccggattac tcgccaaaac aagtgttaga gtggattggc
    13561 gaaattgtgg attctcttcg caaaattaat ccaaatgcca acttttttct attggaagcc
    13621 acaccggtta ataatattac caccaccaat aatgctgcaa taaaagagct caatgcgtat
    13681 tttgaggcaa atattccatc tgatttgact tatgtaaaaa cgtgggaata ttttgctgac
    13741 aaagaaggga atttagatct aactttatgc cacgatggat tacacttcac ccaagcaggc
    13801 tatgaccgcc tagaggcgat tttaaccaaa catttataat gaaaagcttc aataagcaag
    13861 cggtctgaat tagcaaaaaa tttccaaatc ctgaccgctt gttagttaat tacagtgctt
    13921 caatctcttg atactgcacc tgcaatttct ctaatccact caggtactct tgcatttttt
    13981 cacgctcttt ggcgatgact tgctctgggg ctttggcgac aaaggcttcg tttgaaagtt
    14041 tgccttcaat gcgagccact tcacctttaa gtttatccat ctctttggtg aggcgagcta
    14101 gctcagcttc tttgttgata aagcctgcca ttgggatcaa gatctcacca tttgcgacca
    14161 gtttcgctac cgatagcggt gcattttcac cattttccag cactttcacg ctatcaagtt
    14221 ttgccatcga tttgagcaac acttcgttag cgttgagaat agagacttcg tccgcagaga
    14281 aattacgagc gattaaatct aaacctttgc ttggtgcgat gttgctttcc gcacgaatgt
    14341 tacgcaccgc cacaatcact tctttgataa agttgatttg actttcggcg gtttcatcaa
    14401 tggcaagcgg gtcaaattgt gggaattttt gcaacataat ggtatcggct tcaataccta
    14461 caaagccttt cactttctgc cagatttctt cggtgatgaa cggcattact gggtggatta
    14521 aacgcaggag tttttccaat acattcacca gcgtgcgact tgcgccacgg cgttgtacat
    14581 ctgtgccttt gaagaaaata ggtttggtca gctctaaata ccagtcgcag aattgatccc
    14641 aagtaaattc gtagatcgca tttgccacta agtcgaaacg gtattggctg agtgcggtgc
    14701 ggaaagtttc caccgtgcgg ttgaattggc tttcaatcca acgatcggca aggctaaatt
    14761 ccacgtcgcc ttcgcttaaa tccaacttgt cattggtcag cacataacgg ctcgcattcc
    14821 acagtttgtt gcagaagttg cggtagcctt ctaaacgttt catatcccag ttgatgtctc
    14881 gaccgttgct ggcaagggcg gtgagggtga aacgcagagc gtctgtgccg tgtgccacaa
    14941 tcccttcggc aaattctttg cgggttgcct tagcgatttt ttctgccagt tgtggctgca
    15001 tcatattacc tgtacgtttt tcgagcaaat cgtcgagact gatgccgtca atcatatcaa
    15061 tcgggtctaa cacgttccct ttcgatttcg acattttctg cccttgctcg tcacggatca
    15121 agcctgttac atacacggtt ttgaacggca cttgcggttt gccgttttca tctttgatga
    15181 agtgcatcgt gaacataatc atacgagcca cccagaagaa gatgatgtca aaaccggtaa
    15241 tcagcacatc ggtcgggtgg aacattttca gttctttggt ttgttctggc cagcctaacg
    15301 ttgagaacgt ccatagacca gacgagaacc aagtatccag tacgtcttca tcttgcttta
    15361 atggtaagtc cgcaggtaag ttgtgtttcg cacgcacttc cgcttcatct cgtgctacat
    15421 aaacattgcc ctgctcgtca taccacgctg gaatgcggtg tccccaccat aattggcgag
    15481 agatacacca gtcttgaata tcacgcatcc aagagaaata caggttttcg tactgtttcg
    15541 gcacgaattg gatttcgccg tcttccaccg ctttggtcgc gacttccgcc aaaggtttga
    15601 cagacacata ccattggtcg gtcagcatcg gctcaatcgg cacgccacca cggtcgccat
    15661 acggcacttt taagtcgtgt ggtttgattt gatctaacag cccaagagct tcaaaatctg
    15721 ccacaatttt cttacgcgcg gcaaaacgct ctaagccttg atagtcggca ggaattgggg
    15781 cggtgtagtc ggaaagcggt ttaccgtctg tgccgataat ttcggcctct gcacgaatat
    15841 cggcatttaa ggtcatcaca ttcaccatcg gcaagccgtg gcgtttgccc acttcgtagt
    15901 cgttgaaatc gtgggcaggg gtgattttta ccacgcccgt accgaactca cgatccacat
    15961 actcatcggc aataatcggg atttcacggt tggcaagcgg taggattacg cttttgccaa
    16021 tcagagcttg ataacgctca tcttcagggt gaaccgccac cgcagtatcg cccaacatcg
    16081 tttcaggacg ggtcgttgcc accactaagt aatccaagcc gtctgcggtt tttgcaccat
    16141 tagccagcgg atagcggaaa tgccacagcg agcctttgct ttctttgttt tccacttcca
    16201 agtcagaaat cgcagtatgc agtttcggat cccagtttac gaggcgtttg ccacggtaaa
    16261 tcaagccttc ttcgtgcaag cgaacgaaca cctcttttac cgcattggat aagccttcgt
    16321 ccatcgtaaa acgctcacga tcccagtcaa tcgagttgcc taagcgacgc atttgctggc
    16381 tgatcgtgcc gcccgaatag gctttccaat cccagatttt gttgataaag gcttcacgcc
    16441 cataatcgtg gcgggtttta ccttcttccg ctgcgatttt acgctccacc accatctgag
    16501 tggcaatccc tgcgtggtca gttcctgttt gccaaagggt attgttgccc tccatacggt
    16561 taaaacgaat cagcgtatcc atcaaggttt gctggaaagc gtgccccata tgcaaactcc
    16621 ccgtcacatt cggcggcgga atagcgatac agtagctcgg tgcattaata tcttcactcg
    16681 gcttaaaata gccttgcgat tcccagtgtt ggtagagcgc ttgctctaca gcggaagggt
    16741 taaaacggtc ttccattgtg aattgttttg tcattggttt tgttttctct tgtttaataa
    16801 ttttttcact agcttaatct tataaaaaag atctttgccg taaatgcttt tataggtaat
    16861 tagttattta aattaaggtc aactaaaaga ttaattggga attttttgtt cctcttgcat
    16921 ttttcttcgt ttttcccata attgctttcg gctatttaaa cagctttgct caatctcttt
    16981 aatatcatct tctatattgg atgaaaaatt gattaatttg attgtcggag gaaatatacc
    17041 ggttttatct tcttgcgtag ttaatgttag tgttcctaga ttactgttaa tttctttaat
    17101 tttaaatgtt gatagctcgg tatatccccc actaacaaga taactcaatt tcaactctct
    17161 atcgaaaata agatttaata atgttggctt agggctttcc aatctaaaac tccaagttag
    17221 aggtattaac tcacacagag ctgttgaagt catttcccct aaaatcgaat tgtcatcttt
    17281 attaaccata aattcaatga taacatttgg ttgctcttca ggtatgttca ataatttata
    17341 gtcgataatg taatttgtat ttgtagacca taaaccatcc agttttttat tatataggta
    17401 attctcctcg aaatttttcc aaataatagg catgtttgcg atgcgttcta aaatatcagt
    17461 tgtgaagata ctccatatgg cagatataag aataatagga attttgttat tttttatgaa
    17521 ctgttttaag ccattctctt ttttatgagt accaataact tttttagact ttttcctatt
    17581 ctgtttcatc tttgtgtttt tgttccaata tccccgatgg tgatcgtctt cgacgagagc
    17641 ttatttattt aagaacctat cagagatagg cataagcggt ctgtttcgag aagttttttg
    17701 caaagttttt ctttaatccg acagcttgtc acccacacac aagccgtgtg gggttacgca
    17761 tagctgagcc actttgtggc tctaagttac agctccaaag gagctgggat tgtcgagcct
    17821 agcacggctc gtgctaggtg gttttaaacc ctaattccac taattcatca caaagctgat
    17881 tacaccaatt cggtattttg tctgaaattt ttatcacttt cttatcagca atctgcaaaa
    17941 tcaaattcgg cttggtttct gaattatcat aaatcagtgt ttcatcattg ataaaaatcg
    18001 cttcaattaa attttcacgg ctaatgtgat agcgttttct aatggtttct tcatcaataa
    18061 aatgtccgcc ggctttcact cttgctttta cccgtgcgat gttaatttta tagctatcga
    18121 caccaatata atttaatcga gttttgaaat atcctgcttt ggcattttcc attcgtttta
    18181 gaatagattt acccgagagg gttgattcca ttgaaaatgc aacctgattt tttactgcaa
    18241 actgaaatag ttcgattgct tttctgcccg cctcaatatc ggccaatctt ggattgagtg
    18301 ggttaatctg catcgcaata ttatcggaat caatcacaat ctcgacttta tcttgattga
    18361 aagaacgtaa agtagatttg ccggctccgt ttgtgccaca gtaaaaaatt gctaggttat
    18421 tgtgcatatt caatcacttt ttccgtaccg tccggataat gctgaattaa atccccattt
    18481 tctcggcgat acgtcagcac ttcgtgcttt ttcttttctt caaaccatgc tgtaaagaga
    18541 atatccagtt cacgttgttt tttcagtaat tcttcacgac ttgtcatttt atgtcctctg
    18601 tttcagaatc gccaaatacc tttccaactc agctaattca tactgactaa tcaattcaac
    18661 caaactacta atatcttgtt gatttttatg gaaatcatca aaacattggt aatattgggc
    18721 tcgattggta aatttaatat caatcggtaa atagccctgt tttaataatt caaaattaat
    18781 cagtaatcgc cctgtgagcc cgtttccatc aataaaaggg tgaatgcttt caaaggctaa
    18841 atgcagccaa ctgattgcct ctatgggatg aagtgcggtc agtttttgtt gatatttttc
    18901 aatcaataat tgcatttctt cggcaattaa ataagggggg ggcattttct gcccctaaaa
    18961 ttcgtactgg aattttgcga taaacccctc ggctttccgc attgcccatt aataccagag
    19021 aatgaatatc tttaatcgct cgttcgctta atggttcttt attggcgact aattcataaa
    19081 tatagttgaa tgcatcctta aaaccgataa tatctaaatg ctcccgaatc ggtttttcgg
    19141 caatggtcat tccctctttt aaaatgagca ccgtttcacg caaagtaatg gtattgcctt
    19201 caattgcatt ggaattatag ctgctttcaa taataaactc ttcccgcagt cgttgaactt
    19261 cgctttcaga taatggacgg cgttgtgaaa gtgctgtttt taattgttcg attttagcta
    19321 atttattcat tctaacacca tatccaaatg cgcaatccca tcttccaaat acacttctga
    19381 aaccgcttta aacccaaaac tttcataaaa cccttgcagg taactttggg cttgggcgtg
    19441 aatgggttga gcaggaaaat gttcgccaca ataatccatc gctttttgta ccaattccct
    19501 tgctaagcct gagccacgat tttctttcac caccaacact ctacctatat gcacaccatc
    19561 attggctgga attaaacggc agtaagcggt cagatttttt gcattttttg taaagaaatg
    19621 caccgcttgc aggtctttat tatcgacttc ttggtaaggg cagttttgct caaccacaaa
    19681 caccgctgta cgtgcgtggt aaatctcaaa caactcttgg gtggagagtt catcaaagcg
    19741 ttttgcgcgc caagagaggt tttttagcat tgtatcgttt ccagttgcca accaagttgg
    19801 cggtattgtt tatagcggtc acgagcctgt gctttggcgg tttcttccac cggcacgaaa
    19861 tcaataatct gggtaaaact gccgataaat tcggggagtt gggtttggag tgaaatcaac
    19921 aaatcccgac gttgagcatt gcgtttacct ttccacgaaa tttcgatagg cgttgggtaa
    19981 gtggtgattt ctcccgataa attgtgcggc acgaacgaat ccggatctct tgcccaaagt
    20041 gcttcgtcaa tatttaacgc ttgttgctcg gtttcgcatg caatcagtac ccgtttacct
    20101 aatcgccacg cttgagccgc aagttcgcag gcttgcattt cagcagcgga aagctcggct
    20161 gcatcggctt ggcttaatag ataaaattgt acttgtttca cagaatgttc ccagaaattc
    20221 aatcagatat ttaaacttaa tattctagct gaaaatgagt aaaatataaa atctaagcgt
    20281 ttgtttttgc aaaaaattga gaaaaaatga ccacttgtgt tgcgttgcct tgaggaacta
    20341 attagctttt agacgttcta agagaacaat gcactatttc aatagttgga aattgtgtag
    20401 aatacccact tcatttagct attttataag gaacttacta tgggcttatt tgattttgtt
    20461 ggcgacattg gtcgtaaatt atttaataaa gaagaagatg cttcaaaagc ggttacagag
    20521 catttggcgg aagacaatcc gggcgttgaa aatgtaaacg taacggttga aaacggggta
    20581 gcgaaaattt caggcattgc ttcaaccgca gcagctgttg agaaagcggt attgatggcg
    20641 ggtaatgtgg ctggtatcac tgaggtaaat attgatgaag tgaccttgcc tgatgacgtg
    20701 caacttgcaa gtgatgatga gctttatgtt atccaaaaag gggatacgtt gtgggaaatc
    20761 gccacaaaag cttatggtaa cggtgcaaaa tataaagcga ttgtagaagc aaataaagaa
    20821 gttattaaag acgaaaataa aatcttccca gggcaaaaaa ttcgtatccc gaaaggttta
    20881 taatcaaatt gaaagagcta agctggtcga aagtttagct ctttttgtag gtggtgttag
    20941 actgaaaatg gatattgaat ggcagggtgg tattcataac cttcaacttt gaaatcatct
    21001 aagctcaccc aagtttctaa atcttctaag gattttatat caggattaat gattaattta
    21061 ggtgcattga gtggttctcg cttaagttga acatcacgca ttaattctag ttgatcttca
    21121 taaatatgcg cattgacaat tttatggaac gcttgtcctg ccttatgccc tgtaatttga
    21181 gccattaaag ctaaaaaggt atagcattga atcatattcc aatttaaccc aagcggtaca
    21241 tctgccgaac gctgagtact attcaggtaa agcgtgccat caagtagaga aaaatgatgg
    21301 ctgtgtaaac aaggacgtaa gcagcccata tggaaagcgc cggggtggta gaaggtataa
    21361 atttcaccac ggttatcaat tccttttttc aaatcgtcca caatttgtcg caataaatcg
    21421 actgagccac cgtctggttt cgggaaatta cgccctactg cgccgtaaac caagcccata
    21481 tcatcttccc cttttcgata gggattagca agccattgtg cattttcatt tgcattagcg
    21541 tcccacgatt ttgtgcctaa ttgacggaaa tcagcagcat tactatagcc tcgaatatag
    21601 cctaaaagtt cggcaatcgc agctttccaa taactacggc gagtggtaac taaaggaaat
    21661 tctccttttt ctacgtcata agttaagtca gcattaatga ctgtgaggca gtgtttgcct
    21721 gtacgttcat ttgcaaccca tttgccttcg ctaacgatgc ggttacataa gtctaaatac
    21781 tgtttcatta tttacctcat aaaaaatttt aggtaatttt gccatttatt cggtaaaata
    21841 gctaaaactt tatgacacaa cacaataagg agttatggat atgaaaggta taatgaaatc
    21901 cattctggtt ttttccaccg ctgttttttt agcagcttgt tcatcgaata aaagcggttg
    21961 gacacgttta aatgataatg atgttgatca gaaatcttat gctattgctt atggtgcaac
    22021 ggctcagact tatgcggata gagtaaatga aagctatgat atcaattcct ttatgaatgg
    22081 ggtaaatgat tggtacacta aaaaggttac attgccaatt gagcaaatta gagcaataac
    22141 gattaatcga atgttagacc ataatgtgta tgcttattat agtggtgtga tttatgccgc
    22201 agatttgcag gcaaatttca atcatttaga tcctaattgt tgggggcttg ttcaaccagc
    22261 gagtatgacc cagggcattc acgatgcgat gttagattta cagaagaaca aagttcgtgg
    22321 agatgagtat atcaaaaatg gggttgagca aatattgcac ctttgtgtaa aaacgattgc
    22381 tgaagatgaa aatgaatcgc aatctaaagg taaaaccaaa aagcataaat aagttaagct
    22441 atgacaagcg gtaaaatttt taaaaaattt taccgctttt ttataaccgt atgaaatgtt
    22501 taatatttat tctatgaaac ttaaaaaaac agcgttttgt ttattcaata ggcaaacact
    22561 cgggattttt caattttcag gaaaaagaat ttgacatctt tttaaattct agtaatatgg
    22621 cgcccacaga cacagtgagt ggtgagatgg ccgagcaggc tgaaggcgct cccctgctaa
    22681 gggagtatag ggttaaaaag ctctatcgag ggttcgaatc cctctctcac cgccatttac
    22741 tttatcacgc acccgtagct cagctggata gagtactcgg ctacgaaccg agcggtcaga
    22801 ggttcgaatc ctctcgggtg cgccatttta atttttactc tattcaaatt aaaatggttg
    22861 ctgataaaat taaataaact tacaattcaa ata
//
LOCUS       DANMGB010000018        22271 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.018, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000018 DANMGB010000000
VERSION     DANMGB010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22271
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.018"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..2599
                     /gene="adhE"
                     /locus_tag="PXG19_000543"
                     /gene_synonym="adhC"
     CDS             <1..2599
                     /gene="adhE"
                     /locus_tag="PXG19_000543"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL6065870.1"
                     /translation="TQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKASVAAL
                     DKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGITEIA
                     DPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRDAAVA
                     AGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVGAGNV
                     PAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGVYLVN
                     KKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNILLAEC
                     AFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKALAKT
                     FGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLINIKR
                     VGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRITEQLR
                     QRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMWLFYE
                     QPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDGDIKY
                     PLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGLALQA
                     IKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFHTIHG
                     RTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAVEAYA
                     QAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIEDMEAI
                     MTKAYYGKE"
     gene            2746..3642
                     /locus_tag="PXG19_000544"
     CDS             2746..3642
                     /locus_tag="PXG19_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL6065871.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3652..5061
                     /locus_tag="PXG19_000545"
     CDS             3652..5061
                     /locus_tag="PXG19_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL6065872.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5168..6391
                     /locus_tag="PXG19_000546"
     CDS             5168..6391
                     /locus_tag="PXG19_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL6065873.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6429..7625)
                     /locus_tag="PXG19_000547"
     CDS             complement(6429..7625)
                     /locus_tag="PXG19_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL6065874.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7645..8136)
                     /gene="tsaE"
                     /locus_tag="PXG19_000548"
     CDS             complement(7645..8136)
                     /gene="tsaE"
                     /locus_tag="PXG19_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL6065875.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8136..8690)
                     /gene="orn"
                     /locus_tag="PXG19_000549"
     CDS             complement(8136..8690)
                     /gene="orn"
                     /locus_tag="PXG19_000549"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL6065876.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8700..9179)
                     /gene="coaD"
                     /locus_tag="PXG19_000550"
     CDS             complement(8700..9179)
                     /gene="coaD"
                     /locus_tag="PXG19_000550"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL6065877.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9181..10461)
                     /gene="waaA"
                     /locus_tag="PXG19_000551"
     CDS             complement(9181..10461)
                     /gene="waaA"
                     /locus_tag="PXG19_000551"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL6065878.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10641..12020)
                     /gene="yegQ"
                     /locus_tag="PXG19_000552"
     CDS             complement(10641..12020)
                     /gene="yegQ"
                     /locus_tag="PXG19_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL6065879.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12148..12519
                     /locus_tag="PXG19_000553"
     CDS             12148..12519
                     /locus_tag="PXG19_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065880.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12558..16034)
                     /gene="dnaE"
                     /locus_tag="PXG19_000554"
     CDS             complement(12558..16034)
                     /gene="dnaE"
                     /locus_tag="PXG19_000554"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL6065881.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16259..17356)
                     /gene="lptG"
                     /locus_tag="PXG19_000555"
     CDS             complement(16259..17356)
                     /gene="lptG"
                     /locus_tag="PXG19_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL6065882.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17356..18465)
                     /gene="lptF"
                     /locus_tag="PXG19_000556"
     CDS             complement(17356..18465)
                     /gene="lptF"
                     /locus_tag="PXG19_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL6065883.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18639..19436)
                     /locus_tag="PXG19_000557"
     CDS             complement(18639..19436)
                     /locus_tag="PXG19_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065884.1"
                     /translation="MRFWGKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGN
                     VGNLLQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKI
                     GERLFLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIA
                     TNQEKIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFED
                     IAQGENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
     gene            19674..21170
                     /gene="pepA"
                     /locus_tag="PXG19_000558"
     CDS             19674..21170
                     /gene="pepA"
                     /locus_tag="PXG19_000558"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL6065885.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
     gene            21344..>22271
                     /gene="cysK"
                     /locus_tag="PXG19_000559"
     CDS             21344..>22271
                     /gene="cysK"
                     /locus_tag="PXG19_000559"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003899275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL6065886.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLL"
BASE COUNT         6440 a         4990 c         4411 g         6430 t
ORIGIN      
        1 tacgcaacca tttgatgccc aagcagaagt gaatgagctt gttgaaaaag gcttaaaagc
       61 ccttgatgag tttagaaaac tcaaccaaga acaagtggat tttattgtcg ctaaagcctc
      121 tgttgctgcc cttgataaac acggtatttt agcaatgcac gcttacgaag aaaccggacg
      181 gggtgtgttt gaagacaaag ccactaaaaa cctgttcgcc tgtgagtatg ttgtcaataa
      241 tatgcgacat ttgaaaaccg caggggtcat tagtgaagat gatgtcaccg gtattaccga
      301 aattgccgac cctgtcggtg ttgtctgcgg tatcacccca accaccaacc caacctcaac
      361 caccattttc aaagcgttaa tcgcccttaa aacccgtaac cctatcgttt ttgctttcca
      421 cccgtctgct caacaatctt ctgcccacgc tgctcaaatt gtgcgtgatg ctgccgtggc
      481 tgccggtgca ccggaaaact gtattcaatg gattacccag ccttcaatgg aaggtacatc
      541 tgctttaatg aaacacccgg gcattgcaac tattttagcc accggcggta atgcaatggt
      601 tgaagccgct tactcttgcg gcaaaccggc attaggagtt ggtgcaggca acgtaccggc
      661 ttatgtagaa aaaaccgcta aattaaaaca agcggtgtat gacattgtaa tgtcaaaatc
      721 tttcgacaac ggtatgattt gtgcctctga acaagcggcg attgtagata aagaaattta
      781 cgctgagttt attaaagaga tgcaatctta cggcgtctat ttagtgaaca aaaaagagaa
      841 agccttattg gaaaaataca ttttcggtat tgataaagcc aaagatgaaa actgctcagg
      901 tgcaaaactc aattcagcgg tggttggcaa accggctgcg tggattgcag aacaagccgg
      961 ctttaaagta ccggaaaaaa ccaatattct gttagccgaa tgtgcctttg tgggcgaagc
     1021 tgagccactt acccgtgaaa aactttcgcc tgtactggct ctgttaaaat ccgactccac
     1081 cgaacacggt ttggaattgt ctgaagcgat ggtgaatttc cacggtttag ggcatagtgc
     1141 cgccattcat accgaaaaca aagccttagc caaaaccttt ggcgaacggg taaaagccat
     1201 tcgggtgatt tggaactcac catcaacctt tggcggtatc ggtgatgtat ataactcctt
     1261 cctgccatcg cttacgctgg gctgtggttc ctacggtaaa aactctgtag gtaacaacgt
     1321 tagtgcggtg aatttaatca atatcaaacg tgtgggcaga cggagaaata atatgcaatg
     1381 gtttaaagtg ccatcaaaaa tctactttga gcgtgactca attcaatatt tgaaatcaat
     1441 gcacgatgtg cataaagtaa tgatcgtaac cgaccgctca atggttgatc tcggctttgt
     1501 ggatagaatt accgaacaac ttcgccaacg tcgcaaccaa gtgatgattc agttctttac
     1561 cgatgttgaa ccaaacccaa gcctgcaaac cgtacaacgt ggtacagaat taatgcgtag
     1621 cttccagcct gatactatca tcgcacttgg tggtggttca ccaatggatg cagccaaaat
     1681 tatgtggtta ttctacgaac aaccggaagt cgatttccgt gatttagtgc aaaaatttat
     1741 ggatatccgc aaacgtgcat tcaaattccc acaattaggc agaaaagcga aatttgtcgg
     1801 cattccaacc acctccggaa caggctctga agtcacaccg tttgcagtaa ttaccgatgg
     1861 cgatattaaa tatccgctcg ctgactactc gcttacccca accattgcga ttgtcgatcc
     1921 tgcgttagta atgtctgtgc cgtctcacgt tgctgccgac accggtttag acgtattaac
     1981 tcacgctacc gaggcttaca catcgatttt agccaacgac tataccgacg gcttagcctt
     2041 gcaagccatt aagttagtgt ttgaaaactt ggaaaaatcg gtcaaagagt ttgatgaaac
     2101 cgcccgtgaa aaaatgcaca atgcttccac aatggcaggg atggcatttg ccaatgcctt
     2161 cttaggtatt tgccactcaa tggcacacaa aatcgggggt aaattccaca ccatccacgg
     2221 tcgaaccaat gcgattttac tgccacacgt tattcgctat aacggcacac gcccaaccaa
     2281 agtggcaact tggccaaaat acaccaatta tgtcgcagat gtgcgtttcc aagatattgc
     2341 cagaatgctt ggcttaccgg cagaaacccc ggaacaagcg gtggaagctt acgcccaagc
     2401 ggtacacgat ttagccgttc gttgcggcgt gaaaatgtcg cttcgtgagc aaggcgttga
     2461 tgagcaagcc ttcttgaatg cccgccgtga acttgcccta cacgcatttg aagaccaatg
     2521 cacaccagca aacccacgtt tggcaatgat tgaagatatg gaagcgatta tgactaaagc
     2581 ctactatggc aaggaataaa gcacaattta atcgttaaac ttactaaatg gccgcttgca
     2641 agcggtcatt tttcttgaaa tttttacttt tcccttcaca aaatactttc gctcttttac
     2701 aaagcatagt atttttatcg ctccttttat cttacaggaa atactatgca aattacgatt
     2761 ttagacggcg gaattagccg tgaattaatg cgtcgcaatg ctccatttca tcagcctgaa
     2821 tggtctgctg ccgctttgta tgaaggccca cattttgtgc aagcggtaca cgaagatttt
     2881 atcgctcacg gggcagaagt gattactacc gacagctatg cggttgtgcc gtttcacatt
     2941 ggcgaaaaac gctttgcggc agacggcaaa atgcttgccg atttagccgg tcgccttgcc
     3001 aaacaagcgg tcaaaaattc aggaaatatt gcaactcaaa ttgcaggctc acttccacca
     3061 atgtttggct cttaccgtgc cgatttaatt caaatggaac gctttgctga agtcgctcag
     3121 cctttaattg acgggctttc gccttatgtg gatatttggc tttgcgaaac ccaaagtgcg
     3181 attattgagc cgatttccat caaagcatta ttgccgaaag acaaccgccc gctttgggtc
     3241 tcttttaccc tcaccgatga tgaaccaacc accgagccac aacttcgctc gggcgaaagc
     3301 gttaaacaag cagtcgaaga aatggtgaag ttaggcgtgc aagcgatttt atttaactgc
     3361 tgtcagcctg aagtgatcgg cgaggcatta agtgtaaccc aaaaaacttt agccgaatta
     3421 aaagctaccc atattcgcac aggagcttat gccaacgcct ttgctccaca accaaaagat
     3481 gccaccgcca atgacggttt agatgaagtt cgccaagatt taaccctgga ggcttattta
     3541 ggctgggcaa aaaaatggac ggaacaaggg gcaactatta tcggtggctg ctgcggcatt
     3601 ggggttgagt atattgaaac gctggcaaaa aatttaaaat aaggaaatcg aatgtcaaat
     3661 aaaaaaatag gattaatttc actcaccgcc ttagtgctaa gctcaatgat tggctcgggg
     3721 attttcagct taccgcaaaa tatggcagcc gttgccggag cagaagccat taccattggc
     3781 tggctgatta ccggtgtcgg cattatcttt ttaggtttat cgtttttctt tatttcccgc
     3841 ttgcgtccgg atttagacgg tggcatttac acctacgcac gggagggttt tggcgagctg
     3901 atgggcttta tgtcagcgtg gggctattgg ctctgtgcca ccattgggat tgtaggatac
     3961 ctcaccgttg cttttgaagg tttgggtgta tttaccgaca acccgaacac cgtgattttc
     4021 gggcaaggta acaccctcgc ctcttttatt ggatcttcaa tcattgtgtg gctggttcac
     4081 gccctcatcg caggcggtat caaagaagct gcctttgtaa acttaattgc cacttttgtg
     4141 aaagtcgctc cgctcattct gtttatcggg ttaggcattt ggtatttcga tgtggatctg
     4201 tttaatagcg atgttaaagc caccgcactt aataatagtg taagcgacca agtgaaaagc
     4261 acaatgttaa tcaccttatg ggtatttacc ggtgtggaag gggcttctgt gctgtcggct
     4321 cacgcgaaaa agcgttctga cgtgggactg gcaaccgtat taggtattat tattgcactt
     4381 gctctttatg tggcaattac cattctttca ctcggaattc tgccacggga aactattgcc
     4441 aatatggcaa atccgtcaat ggggccgttg ctcgatgcaa tgatgggccc aaccggcaaa
     4501 gtgattatta ctgcttgttt aattgtatcg gtgcttgcct cttacattag ctggacgatg
     4561 tattcggcag aagtgcctta tcgtggctca aaaaacgggg ctttcccgaa aattttagac
     4621 aaagtgaata aaaacggcac gccgattaac tcactctggt ttaccggctt tatcgtgcaa
     4681 ttttgcttgg tgttggtgtt tgtttttgag caaagctata acaccttatt gctgatttcc
     4741 acctcgatga ttttaattcc ctatttctta atcggggctt atttattcaa attagcgatt
     4801 caaaccaacg ccacttggta cattaaactc accggcttta tggcagccct ttacggatta
     4861 tggattgtct atgccgcagg actagaatat ttgctgcttt cggtggtgct ttatgtaccc
     4921 ggaattttac tcttcctcta ctccaactat aaattcaacg gcagattaac cctttcaacc
     4981 gctgaaaagg tcatcttaat cgtgctactg gtaatttttg gctatgccgt gattgagctg
     5041 ccagcactat tagcagcata attcccatca aaaatgaccg cttgcaagcg gttatttttc
     5101 taggatcttc tgcaaagatt cattagaata gaaacaacgt caataataaa taaaaagagg
     5161 agaaacaatg caaacttatc aacataaagc cctttgtcgg gtaagaacca ttaccctttt
     5221 tctgagttta accaaagata aattgcagtg ggaaacggca ttaaatgcgg caaaagcaga
     5281 atttgatcta ttagttcccg ctattcaaac acaaggctat cacatacaat cgattcgaat
     5341 cgttaccaac agtttcgggg aatatcttga tctcactaat attgaaacag cgaaacagga
     5401 tttagcctat cttaaacagc tattaaccca acttaacgat agcggtttac gcattcgctt
     5461 tgccattggt gaggcaaaaa caccccacga attagcatta ctacctgagc tgattttaaa
     5521 ttatggtgat ttatctaacg cttgtgtcaa tattgaaccc gatgaatttg ggattttaga
     5581 caatgaaacc attttacaat ctgctcaaat tatcaaacaa atcgctgaaa ttaccccaag
     5641 aggtgaaggc aattttaatt ttacggtgaa ttttaactgt aaacctttta ttccttattt
     5701 tccggcaagc taccattcaa gcaagctccc taacagtttt gtgataggcc tagaaacacc
     5761 agatctatta gtagcggtgt taaaagagct gaaagccagc ccacataacg acttttatcg
     5821 ccaatgctat gaaacgatgt ctcaagcctt gcaatatcac gttgatgaag ttctcgaagc
     5881 agtaaaatcg gtacaacaca aattacaatt tgcctttgct ggcattgata gttctgctgc
     5941 tccgtcaaaa aactgtgcct caatgacaga agtttatgaa ttaatgggcg taccattttt
     6001 tggggcagcc ggaacagtag aagcctcttc acttctgaca aaagtcttta aatctatcaa
     6061 acatgtaccg cttgtcggtt tttcaggttt aatgttggca gtaaccgaag atttaggctt
     6121 agccgcaggc acacacaaag cccaattcga cattcgtgct ttactaactt atagtgctgt
     6181 ttgtggcatt gggttagata ccgtaccgat ttccaatgaa gccactgttg aacaaattgc
     6241 cgcattaatg cgagacaccg gcacaatggc atttagacta aataaaccgc ttacagtacg
     6301 tttatttcca attccgaata agagtgctgg ggaagtgaca gaatttgaaa gtgatgattt
     6361 atgtaactgc cgaattttag ctgtacctta aaataaaggc tgatggatat ttccatcagc
     6421 ctttcaattt acttcacctt caatttttta cctaccgtga tctgataatt tttcaaatta
     6481 ttcagctcac tgattttttg cggcgtagta ccgtaagctc tagcaatcga gtaaaccgtt
     6541 tcatcttgtt ggacaatatg gtagccactg ttagacacct taatttctct ttgagagtct
     6601 gattttttag actgattttt ttgatctttc tcaagagctg ttttttcttt tagttgctgc
     6661 tcttttttct tattggtttt agccgaatct tcttttttat cctctttttt gctcttttct
     6721 ttcaattttg tcttatctga ttgcgtattc ttctcttgtt tctcagaagc aggcttttta
     6781 gttaaatcag ctttagcagt tttttcctct ttcttatttt gcttatcttc tttgtccgat
     6841 tttttactga ccgaagaact agcaactgca ttttttgccc gataagcgac taatccatta
     6901 taaatggccc gagcaacttg tttacgataa tttgcactgg ctagctttgc ttcctcggtt
     6961 gaattagata aaaatcccgt ttccaccaat acagatggaa tatcaggtga acgcagaaca
     7021 cttaagcttg cgtgctgagg agacgatttt gctaatgcag ccacatttga cattttagct
     7081 aaaatgctct tgcctaattc atagccggca cgttgagagt gagagaactg taaatcaagc
     7141 actgtttgat ttaaataacg ttcattgttg cttgaaagca ccgaaccagc cccgccaagt
     7201 aattccgact gcttctcgtg gtcttccaac catttaccca tttcatcgct agcacggcta
     7261 ttagaaagta cccaaaccga agcccctttc aaggaatcgc cacgaggcga agagtctgcg
     7321 tgaatagaaa ccagcagatc ggcacgatgc ttacgggcaa tctcggtacg ttgcggtaat
     7381 tggataaaat aatctcccga gcgtgtcatc actgctttaa aattaggatc ggcatctaac
     7441 aaggctttta gctctttaga aattgcgagg gtaacgcttt tttccaaaat ccccagattt
     7501 ttaccaatag cccccggatc ttttcccccg tgtccggcat caatcgccac aatggttttg
     7561 gcaaatgtgg aaaaactgaa taaactcaat gtgctaaaaa caataaatct gataacttgc
     7621 ttcattacct tccctacaag cggtctattt ttgatgaaaa tttactaata tatctactgc
     7681 agtttgattt tgcggcaaca ggctaatctg ccgtccgtca ttcttataat caatttggat
     7741 cacaaaatca gcctctggaa tcattccttt acctttaact gcccattcaa gcaaacaaag
     7801 cgtttgtggt ttgaaataat cacgaattcc cataaactcc agctcttcag gatcggctaa
     7861 gcgatacaaa tcaaaatggt aaaggctgaa aggcggaagt tggtattctt ccaccagagt
     7921 ataagttggg ctttttacat tgccttgatg cccgaaagcc cgtacgatcg agcgggttaa
     7981 ggtggtttta cctgccccaa gttcgccgtt taggtaaaca accagcgaat gagcttggtc
     8041 ttgcaataaa tatttcttaa gttctaacgc gaatgattga ccaaattcca gcaatttagt
     8101 ttcatcttcg cagtaaaaag agagagaatc tgtcattatt tttggtctag ctgaataaaa
     8161 tgttcccgat aaaatttcaa ttcgttaatg gattcacgaa tatcgtccaa cgctaaatgc
     8221 gtattgcctt tactgaattt atctaaaatc tccggtttcc aacggcgtgc cagctctttt
     8281 aaagtactca catctaagtg gcgataatgg aaataatcgg ctaaatcagg catatattta
     8341 tacaaaaaac gtttatcttg agcaatgctg ttgccgcaaa tcggagaagc gccttttggc
     8401 acccagcgtt ttaagaagtc taaagtttgc aactctgctg cccgttcagt caatttgctc
     8461 gctttcactc gttcaatcag cccgttagcg gtatgggttt tgacgcacca atcactcatt
     8521 ttctctaata aatcatcggt ttggtgtacc gcaagtaccg gtccttccgc taaaatattt
     8581 aaatccttat cggtcacaat ggtggcgatt tcaataatgc gttctttttc cggatctaac
     8641 cctgtcattt caagatcgat ccaaattaaa ttttgttcgt tttgagccat tttatttcct
     8701 tacacttttg caatttttag ggcatttttg accgcttgcg gcacaaattg gctgatgtca
     8761 ccattgtggc gatagatttc ccttaccatc gttgaagaaa ggtaacgcca ttctattgaa
     8821 gggggaaaaa aaatagtttc taaatcgccc gataatttgt aatttaactg agcgagttgg
     8881 atttcatagt caatatcatc tgccccacga ataccacgga ttaacgcttt ggcattctgc
     8941 tgtttggcaa agtctgctaa caatccacta aagccaatca cctcaatatt ttgccactgg
     9001 gtacagcttt gtttaacaag ctccactcgt tcttcaagac taaaaagcgg ctgcttgctt
     9061 gggttttgag caacggcaac aatcactttt ccaaataagt gagaggcttt gcaaattatg
     9121 tccaaatgcc cattggtaat gggatcaaag gtgcctgcat aaattacgtt ataactcatt
     9181 ttatttctct aaataggagg ctaataaatc caaatggcgt tttaatgccc cttgattttc
     9241 ctgtaacacg cttaagccgg attttgcaat ttcttgtccg atttggggct gcttaagcaa
     9301 taattgaatg ctctcggtca aagcctcgac tgaactttca atttcaatca cgcctttcac
     9361 ctcacgcaat ttctcaaaga tttcagggaa attataggtg taaagcccag aaaccaccgg
     9421 aatattaaaa gcgattggtt caagtggatt atgcccaccg tgtttgacca aactgcctcc
     9481 tacaaaagca atgtcagaca acccatacag taacatcatt tcccccattg tatcacctaa
     9541 cattacttga gtattttggc ttaacgtttt attctcagta cgttttacat aatttaaatc
     9601 tgatttttga atcagtagct caactaaacc aaaacgctcc ggatggcgag gcactaaaat
     9661 caacactaaa ttcgggtaat gctctaataa gagtttatga gcatctaaaa tcagcttctc
     9721 ttccccttcg tgagtactgc cggcaatcca aatcggtctc tctgttaaat tcagactagc
     9781 tttagtttta atcaccgatt gatgaagctg tggcgtaatt tctaaatcaa atttcaggtt
     9841 accggtatta accatttttg ccggtgcata accgagtgct aaatagcgat ctcggcttac
     9901 ctcatcttga gccataatca gactaatttg gttgagcata tccttaatgc taccttttac
     9961 ccagccataa cgcttcgcag aacgtggcga taagcgggca ttggcaatca caaatggaat
    10021 tttacgaata tttactttac gaattaaatt cggccaaagt tcggtttcaa ttacaatcat
    10081 caatttcgga tcgataaaat tcaaaaaccg ctcgatagca tcaggtaagt cataaggcaa
    10141 ataaaaatgt gaaacactat taccaaaagc agcttgcaca cgcccagagc ctgttggcgt
    10201 taccgttgtg actatcaacg gaagttcagg atattgcttg ctgactgcct taatcaaaag
    10261 cgttgcagca atcacctcac caaccgatgc cgcatggatt accacccctt ttgctttcgg
    10321 tttttccgat tcgtcataaa tcccataacg ctcccataaa cgtttccgat aagccggttg
    10381 tttacgccct ttgtaccaca ttaatagcag aaccacaggc tgtaatagat aacttaaaca
    10441 aatatagagt aaacgtagca tttattttcc ttataccata accctcacct cttgtgggag
    10501 agagtcaaat acgccaataa atcgttcctc tcttgttcga gaggggggaa caagcggtta
    10561 tttttaccaa aaattttgca atctatatcc tcaaagacaa aaccacggaa taaccttaat
    10621 ccgtggttta tctcgcatca ttacgcttga tgtggattgc gggtattcgt attcactaag
    10681 ttacgcatta aaagtgcaaa atccaactca atatctgccg gcacatctaa aaagacaaaa
    10741 tgcccgtcac cgagtgctgc gtccacattt tcatttttgc ggttaagcat acgctcgatt
    10801 ttaaatacaa tgttgccttt aggggtcatc atttccactg aatcgcccac taagaatttg
    10861 tttttcactg ccacttccgc caagccttct gcattgcgtt tgccggtaaa ttcgcccaca
    10921 aattgttggc gttctgaaat cgaatagcca tattcatagt tttggtattc atcgtgagta
    10981 tgacgacgta agaagccctc tgtataacca cggtgtgcaa ggctttcaag agtatccatt
    11041 aaactttcgt caaacggttt accggcagcg gcatcatcaa tcgccttacg atacacctga
    11101 gccgttctcg cacagtaata gaacgatttc gtacgcccct caattttcag tgaatgcacc
    11161 cccatttgag ttaaacgctc aacgtgttgt actgcacgca gatctttaga gttcataaaa
    11221 taggtgccgt gttcatcttc aaaggcggtc atttgctcat cagggcgttg tgattctgta
    11281 taaaggaaca ctttatctgt tgcttcgcca ttacctagag taggagccac atttttgact
    11341 tcaatttccg gctcatactt aggcacaatt tgccctacct catcaatctt accttcttcc
    11401 attttatatt cccaacggca agcattggtg caagtgcctt ggtttgggtc acgcttattg
    11461 atatagcctg aaagcaagca gcgacctgaa tatgccatac acaaagcacc gtgaacgaag
    11521 atctcaagct ccatatccgg cacttgttca cgaatttctt cgatctcttc gagtgataat
    11581 tcacgggata aaatcacacg ggttagcccc atttgacgcc agaatttcac cgttgcccag
    11641 tttaccgcat tggcttgcac cgaaagatga atatccattt cagggaaatt ttcacgcacc
    11701 aacataatta agcccggatc agacataatc aaagcgtccg gcttcatatc cactaccact
    11761 tttagatctt tgatgaaggt ttttaatttt gagttgtgtg gcgcaatgtt taccaccaca
    11821 tagaattttt ttcctaaggc gtgggcttca tcaatcgcaa cttttaaatt ggcgtggtta
    11881 aattcattat tacgcacacg caagctataa cggggctgtc ctgcataaat cgcatcggca
    11941 ccataagcaa aagcgtaacg catatttttt aaagaacctg caggcgaaag tagctcaggt
    12001 ttggcatatt ttaaagtcat attattctct tttctgataa caagtcagga cttctcgacg
    12061 tgagaagcgt aagcggtata ttttctaaga aatattgcgt gatggcaagc taatccatta
    12121 caatccgatt tttatgtggg gaacaatatg aaacttaaat accttttagc aacaacatta
    12181 ctggcttttt caacatttac cgccgctcaa agcatcaaga cggagatgat gcaaatgaat
    12241 atgcaagcga ataaattgat gcgtgccgaa tcggcagaag agtttagcga aattgcgaat
    12301 gatttcatta taattaccga gaaaaccaaa gggatttttc ccaatagcgt agaaggcgat
    12361 aaagcagctc aggaagatta ccaagccggt atgcaaaaat taattgatat ggttaatcaa
    12421 gccagtgaga aagctcaagc aggtgaattg caagaagcaa aaatgctgat ttccgagctt
    12481 gaaatgatca agcgtgaata tcacaaaaaa tacaaataat tcaacacatt aaaagggtga
    12541 gctaaagctc accctttcta ttcaaattcc agttcaaccg aattctcacc aagaagtgcc
    12601 tttaattcgc taaacattgc ctcattcggg ctgattcgcc actctactcc gcctttgagc
    12661 aataccctac cttccgggct ttggtaataa aaatgcagcg gtaaagtgcc ttctttatgt
    12721 ggggtgatga tagcggtcat ttttttaata aaatctgcag aaagttgctc tttgctaatc
    12781 gctaacgcta aacttttggc aaatcgaccc cttgcttcat caagggataa cacttctcga
    12841 gccgacattt tcagtccacc gctgaaatca tcaaactgta ccgaacctgt tgccacaata
    12901 atttggtctt gttgcatcaa atgcccgaaa ttttctaagg cttccgagaa aagggtaatg
    12961 tccaatttcc ccgagcgatc ttcaatagtc gcaatcccaa tacggcttcc tcgcttggta
    13021 actgccactc gagatgccat aacaattcct gaaaccgtgg tcatttgccc tcggaaagtc
    13081 ggttgcaatt cattcagccg attaggggca tagtgggata attctttgag gaatctacca
    13141 atcgggtgtc cgcttaaata cagcccgagc gtggcacgct ctccatctaa aatcacttgc
    13201 tccgaccatt ttggcgtatt ggcgtaagca ttttgcactt cttccggtgt ctcggtaagc
    13261 acgccaaaca tatcgctctg cccgagttcc tccattttag cgtgctgatc tgaggcttta
    13321 agtgcatctt ccaaattctt catcaaggca gctcggtgag ggcctaattt gtcaaaagca
    13381 ccggacataa tcaggctttc aaaggtgcgg cggttgattt ttttcagatc gacccgagcg
    13441 gttaaatcaa atagatcttt aaatttcccc tctttttggc gagctgccag aattgcctca
    13501 atcggtcctt ccccaacgcc tttaattgct cctagcccgt aaacaatttc gcctttttca
    13561 tttacgctaa aacgatgttt accgctgttt acatcaggcg gcacaacggt taagcccata
    13621 ttcatacact catcgtagaa cccgacaatt ttatcggtat tatccatctc tgaggtcatt
    13681 accgcagcca taaattctgc cggataatgg gcttttagcc aaagtgtttg gtaagaaacc
    13741 aacgcataag ctgctgagtg agatttatta aagccgtagc cggcaaactt ttctaccaag
    13801 tcaaaaattt gaccggcaag tttaccgtca atccctttgg cttccgcccc tttttcaaac
    13861 acttcacgct gtgcagccat ttcctccggt ttcttcttac ccattgcacg gcggagtaag
    13921 tccgctccac cgagtgtata accggcaagc tcttgtgcaa tttgcataac ctgttcttgg
    13981 taaacaatga ccccataagt cggctcgaga ataggtttta agcattcgtg ttggtattgc
    14041 ggatcaggat aagaaacctc ttctttgccg tgtttacggt caataaagtt ctgcaccata
    14101 cctgattcca gcggccctgg gcggaatagt gccaccaatg cgataatatc ttcaaaacag
    14161 tccggcttca ggcgagaaat taagtctttc attccccgtg attcaagctg gaatactgct
    14221 gtagttttag ctgccagcaa cagagcaaag gattttttat catcaagcgg aatggtttca
    14281 atccgaatcg gctctttgcc ttcacgagcc aaacgttcgt taatcatctc caacgcccat
    14341 ttgatgatgg tgagcgtacg caagcctaag aagtcaaact tcaccaatcc tgcatattcc
    14401 acgtcatttt tatcaaaatg ggtaaccggg tgtaagccct cgctatcgca ataaagcggc
    14461 gaaaaatcgg taatcgcagt tggggcgatc accacaccac cagcgtgttt acctgcatta
    14521 cgagttacac cttcgagctt acgagccata tcaataaggt ctttcacctc ttcatcggct
    14581 tcatatagct caggcaattt tggctcagcg gcaaaggctt tttcaagcgt cattcctgga
    14641 tcgggcggaa tgagtttgga gatgcgatcc acaaagctat aggggtgtcc aagcactcgc
    14701 cctacatctc gaatgaccgc tttcgccgcc atagtaccga atgtgataat ttgcgatacc
    14761 gcttgtcgcc cgtaggtttc cgcaacgtgt tcaatcacac ggtctcgccc gtccatacag
    14821 aaatcaacgt caaaatcggg cattgaaaca cgctcagggt tgagaaaacg ctcaaaaagc
    14881 aaatcaaatt ccaatgggtc aagatcggta atcttcaacg cataagccac caatgagcct
    14941 gcccctgagc cacgacccgg tcctaccgga atatcattat ctttggacca ttggataaac
    15001 tccatcacga tcaaaaagta acccgggaac cccatttggt tgatcacatc taattcaact
    15061 tgcaatcttt cgtcataaac cgaccgcttg ttcgcccttt cctcaggatc agggaataga
    15121 aactctaaac gctcttctaa gccttctttc gattttttta ccaagaaatc ttcggtggaa
    15181 agctcaccgg tcgggaaatt tggcaggaaa tactcgccca aacgcacggt aaccgaacag
    15241 cgtttcgcaa tttcaaccgt gtttgccaat gcactcggta aatcggcaaa cagcttgcac
    15301 atttcctctt cagtacggaa atattgtttc ggtgagtatt ttttcgggcg tttcgggtcg
    15361 tctagggtgt agctgtcgtg aatggcaacc cgaatttcgt gtgcgtcaaa gtcatcttct
    15421 ttcaagaaga caacatcatt taccgccact aacggaattg catttttttg tgaaaattcg
    15481 accgcttgtt tgatatagcg ttcttcgtct gcccgtccgg tacggcaaac ggaaaggtaa
    15541 aaatgattcg ggtaatattg ctgataaaaa gctaattttt cttcagcttc ttgtcggttt
    15601 tctttgagta aggctttacc cacatcgccc attcgcccgc cggaaagaat gatgatgccc
    15661 tcattcagct ctgctaacca ttcacgttcc accatcggaa attccacata gccttgctga
    15721 taggctttgg acaaaatttg ggtaatatta tggtagcctt tgttgttctt cgccagtaat
    15781 gtcagctcaa aataatcttc attgccgctc tcggttctaa cataaacatc tgccccgata
    15841 atcggcttaa tccctgctcc caatgcttcg ccatagaatt tcaccaaccc gcaaaagttt
    15901 ataaaatccg ttaagcccat tgccaccata ttattagcgg cagcggtttt aactaaggat
    15961 tttaccttag ctaaaccatt aatcattgag aaatcactgt gaacttttaa atgaacgaaa
    16021 cgacaatctg acataggaat ataatctaag taaagaagtt tcccctcttt agtaaagact
    16081 gtcaggttct aaaaagtgaa gccttctgtg aataatcccg ttgggcgaat gttattcgcc
    16141 cctacaaacg agcattattc ttgctcagag ttacatttaa aatccgaatg taggggcgaa
    16201 ttacattcgc cctttcagaa cctaacaacc ctgctttatc taaagaaggg agttaaaatt
    16261 aatcacgttt tttgcttaac agccaccaaa cgatgatcaa acagagtagg cttggaatta
    16321 atgctccaac cggtataggt aaccaagtgg caattaagct taaattgcca aacacaatat
    16381 ttgccacata gaacataaag ccggcaacaa taccaatcac aattttcgcc cccatcgtac
    16441 tactacgaag cggcccgaaa ataaaggaga tcgcaagtag catcatcacc gccattgaga
    16501 ttggttggaa tacttttcgc cagaaggtga tctcaaaacg tttcggatct tgtccggtat
    16561 cttttaagaa gccgacataa tctgccaagc ctgaaatcga gagcgactcc ggtttgagtg
    16621 aaacaatgcc taatttgcta ggggttaaac tggtttgcca aacttgatct ggctgtttag
    16681 cttgctggat ctgattttct cccacagtcg atttttccac tttagatagc acccagcctt
    16741 tttcatcact gtaattcgca gttcgggctt ttaaaacaga ttgcaattca cgtttgtttt
    16801 gtccttcgcc gaattgataa atcagtacgt tatctaagct tttttcattt ttaatatgat
    16861 taatatagat aaatgaattg ccatctttcg cccaaaaccc gtcttttgtg gcaagcattg
    16921 agccgccact ttgggcaatc gaacgcatat tacgggcaaa ctgctcggtt tgtggcacgc
    16981 cccattcgcc gataatcatc gtaaaaatga ctaacggtaa ggcagttttc atcacggcta
    17041 aaccaatgcg gaaacgggaa aaaccggagg cttgcatcac caccaattca ctaaggctcg
    17101 ctaggttgcc taaaccgagt aatgagccaa gtaatgccgc aatcgggaaa aaggtttcga
    17161 tatctcgtgg aatagttaaa aaagtatagt atgccgcttt taagccatcg taagatccac
    17221 gtcctacatc acgaaactct tccacaaatt taataatcgc cccaagccca atcaacataa
    17281 acagggttaa aaaaatcgcg gataaaatcg ttttgccgat gtagcgttct aaaatattca
    17341 ttgagaaaaa ttgcattatg ccaccgcctt attggttaat ttttttgcac caaattgata
    17401 gcgtaactta gacataaatt tactatccca cgcatttaaa ataacaccta aaactaaaaa
    17461 ggcaactgat accaacggca ttaacacttc cgcattcaac ttgcctgatg cccctgacga
    17521 ttttagcgag ctttgtagta agaaatagat taaataaagc aataacgccg gcagtagttt
    17581 agcaaaacgc ccttgacgag ggtttacact actcattggc accgctaata atgccattaa
    17641 cggtacagct aaaatcaaag caagccgcca atgaagctcg gcttttgctt ccggcgtttt
    17701 ggtttccatt aatttcttga aatcggctcg ttgcactaat ttctcatcag attcaacgtc
    17761 ttgatagcct aaataagcag aataattctc aaaatgtgaa atacggaaat cggcactttg
    17821 tggtgtacct tcaaaacgct tgctctctgc caaggttaag acttgatccc catttggcaa
    17881 accttgcaac gtgccggatt cagcaacaac cactgaaggt ttgtttttct tctgctgttc
    17941 cggctggaaa acgtagatat catttagact gttattttca attttatcaa taaataacac
    18001 atagccaccg gcagacataa attgtccggc cgaaagagcc gcaaaacgtg ggttggcttt
    18061 cgcttccgct aacatttcac tctgtttatt aattgcccaa ggcgtaagcc aaaacacgtt
    18121 ataaaccgct aatgcagtgg taaaaatcga gagaaacatc gccactttaa ccaatagccc
    18181 ttgcccgata ccacaagccc gcattacggt aatttcactt tcggcataaa accgcccgag
    18241 ggttaataac aaggcgataa acagtgagag tggcagcatt aattgtgcca ttgtcggcat
    18301 acctaagcct aataagctca ccactaaatc tgccggtact ttaccactca cagcagaact
    18361 tagaacacgc actaattgct gacaaaaaaa gatcagtaat aagataaaca atatcgccaa
    18421 ttggctttta aatatctctt tggttaaata tcggcttaag atcacgtttt ttctctataa
    18481 catttacaaa tctgaatacc gctaaacaca agcggtctat ttttgttaat tttttgcaaa
    18541 gagcgcaaaa taacttattc gaatcgctaa taataccttt ttcatacaaa aaaatcacct
    18601 atagaaaata tcacgcacgg caaaaccgtg cgtaagtatt attgtttttt cgattttttc
    18661 gatgatgttg ctttatgagc ttcaagaatt aatttcttac cttggctatc ttcaatttca
    18721 atcttaggtg gtgcttccgt attttgatga aggatagcta taatattttc accttgtgca
    18781 atatcttcaa agtttccttt cacacgtaac ttagccgcat caacactagt gtcaaatact
    18841 aagaatgtac ctaatgcggt aactctaata tttttaagcc ctatattgtc cttcgttacc
    18901 gttttatatt gaggtgcttt tttccctttt gcagccataa tcttctcttg attagtcgca
    18961 atattaagaa tattttgaac tttagtcgct tctgctgtag attgtgcctg ttctgttaaa
    19021 tttggttctc catcaaaaat aacatcccca acaaattgca cctctttagg ctcattttgc
    19081 aataatggtg caacgtcttt agctgaaaca accaaaaata accgttcacc tattttttca
    19141 aaacggacat caatattggt taattgtgat tcaatttgtt cattaattgt cttgatcgca
    19201 gtttctgtct cattttgaag cgatatttta cgtgtaatat caacatcata agcaataaaa
    19261 ccaactttta aacgttgtga taactgctga agtaaattgc ccacatttcc atcataagaa
    19321 agacgtaact ttgcctgctc atagcgacta atttgagcat catcattagc gaaaatagtg
    19381 ttttgagtcc ctaagccgat tagaccaaca acaaacgttt taccccaaaa gcgcatcatt
    19441 tttatctcca attattctct taaatctaaa aaactctttt agtataaagt aagcaaacta
    19501 aaagaaaaac cagtaaaatt atctatacga ccgcaaaaaa catttaatat ttgcaaataa
    19561 aaagtaaatt attttaaata atgatttaca tcagggtata tctatatttt acttatcatt
    19621 gatgattatg ttggcattat aaaatctgta gcaataaaaa ttaaggagga aaaatggaat
    19681 ttagtgtcaa aaatggcagt gttgagaaac aaagaaccgc ctgtttggtt gttggtgtct
    19741 atgaaccccg ccgattatgt tctgccgcag aacagcttga taaattaagt aacggctata
    19801 tcagcacatt actgagaaga ggagatttag aaggcaaagc agggcaaacc ttactcttgc
    19861 ataatgtgcc gaatgtactc gctgatcgag tattattagt cggctgtgga aaagagcgtg
    19921 aattaactga acgccaatac aaacaaatta ttcaaaaaag tgtacaaact attaatgaaa
    19981 ccggttcaat ggaagctgtc agctttttaa ccgaactgca cgttaaaggt agaacacctt
    20041 attggaatgt gcgatttgcg gtagaggcaa tccaagaaca actatatgcc tataacgatt
    20101 tcaaaagcat caaacctgaa gttcgccgtg aattacgccg tgtgattttt aatgtcgcac
    20161 accgtaaaga tcttcctgat gccgaacgag ctttagaaca cggaaaagcc gtagcacttg
    20221 gaatcagcca cgctaaaaat gtagcaaatt gtccgcctaa tgtgtgtaat cctcactatt
    20281 tagccgaatt ggctaagggt ttagcctacg actatcctgc catttcaact accattgttg
    20341 atgaaaaaca gatggcagaa ttgggaatga atgcttactt agcggtttcc agagcctctg
    20401 aaaatgaggc ctttctttca gtgattgaat ataaaggcaa cccgaatgct gatgcgaagc
    20461 cgattatctt agtcggcaaa ggaatgacct ttgactctgg cggtttatcc attaaacctg
    20521 cggaggcgat ggacgaaatg aaatacgata tgtgcggagc tgctactgtt tacggtacaa
    20581 tcaaagcaat tgccgagatg aaattaccac tcaatgttat cggcttactc gccggctgtg
    20641 aaaatgcggt tgatggcaaa gcctatcgac cgggggatat tctcactaca atgtctggtt
    20701 taaccgttga ggtactcaac accgatgcag aaggacgttt agtgctatgt gatgctctca
    20761 gctatgtaga acgttttgaa ccggaattag tgattgatat tgctacccta actggtgctt
    20821 gcatgattgc cttaggtaat cataacagcg ggctgatgtc acctcataac ggtttagcaa
    20881 acgaactctt agctgccgca gagcaagccg atgacaaagc gtggcgttta cctttagggg
    20941 aagaatatca agaacagtta aaatctaact ttgctgatct tgctaatatc ggcggacgtt
    21001 taggcggagc ctgtactgcc ggtcaattcc tctctaactt tacaaagaaa tatacttggg
    21061 cgcatctaga tattgccggc acggcttgga aatctggggc agccaaaggg gcgaccggca
    21121 gaccggtatc cttactaaca caatttttga tcaataaagc ccaggtctaa ctctcacaag
    21181 cggtctgatt ttatcgagtt tttgcaaaaa gaaaatcaga ccgatcctct tcatacgccc
    21241 ctatattctt tttagttata tcaaataaat tccagctact agaaaagcga ttaaaaataa
    21301 gtatgataaa tcccaatctc aatacttatt aaggaatatc actatgacta tctatgcaga
    21361 caactcatac tcaatcggca ataccccgct ggtgcgttta aagaattttg gcaacggcaa
    21421 tattgtggta aaagtggaag ggcgtaaccc aagttttagc gtgaaatgcc gtattggtgc
    21481 gaatatggtg tggcaagcag agaaagacgg tattctaacc aaagacaaag aaattgtaga
    21541 tgcaaccagc ggtaacactg gaattgcctt ggcttatgta gcagccgctc gtggttataa
    21601 attaacgctc acaatgccgg aaacaatgag taccgagcgt aaacgcttat tgcgtggctt
    21661 aggagtaaat ttagtcttaa ccgaaggggc aaaaggaatg aaaggagcga ttgcgaaagc
    21721 tgaagaaatc gcggcttccg acccagatcg ctatgttacc ttaaaacagt ttgaaaaccc
    21781 ggcaaacccg gcaattcacc aacaaactac cggtcctgaa atttgggatg caactgaagg
    21841 taaaattgat gtattagtgg caggcgtagg aacaggtggc actattaccg gtgtttcccg
    21901 tgctattaag caagataaag gcaagcaaat tatttcagtg gcggtagaac cgagtgaatc
    21961 gccggtcatt acgcaaactt taaacggtga agaagtcaaa ccgggcccgc acaaaattca
    22021 aggcattggt gcaggcttta ttccgaaaaa cttagattta tcactgcttg accgtgttga
    22081 acaagtttca agcgaagaag cgattacaac cgcacgccgt ttaatggcag aagaaggcat
    22141 tttaggcggt atttcatcag gtgctgccgt tgctgccgca gatcgcatcg ctaaactacc
    22201 tgaatttgcc gataaattaa ttgtagtgat tctgccttca gcctcagagc gttatttaag
    22261 tacgctactg t
//
LOCUS       DANMGB010000019        22112 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.019, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000019 DANMGB010000000
VERSION     DANMGB010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22112
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.019"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(136..1263)
                     /locus_tag="PXG19_000560"
     CDS             complement(136..1263)
                     /locus_tag="PXG19_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL6065887.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPD
                     YPVIKDKPKKVIILLIGAFIGLMISCLSIILTHYLLASKFK"
     gene            1412..1753
                     /gene="erpA"
                     /locus_tag="PXG19_000561"
     CDS             1412..1753
                     /gene="erpA"
                     /locus_tag="PXG19_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL6065888.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1858..2181)
                     /gene="yidD"
                     /locus_tag="PXG19_000562"
     CDS             complement(1858..2181)
                     /gene="yidD"
                     /locus_tag="PXG19_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL6065889.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(2130..2504)
                     /gene="rnpA"
                     /locus_tag="PXG19_000563"
     CDS             complement(2130..2504)
                     /gene="rnpA"
                     /locus_tag="PXG19_000563"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL6065890.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2540..2674)
                     /gene="rpmH"
                     /locus_tag="PXG19_000564"
     CDS             complement(2540..2674)
                     /gene="rpmH"
                     /locus_tag="PXG19_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL6065891.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2911..3873
                     /gene="hemH"
                     /locus_tag="PXG19_000565"
     CDS             2911..3873
                     /gene="hemH"
                     /locus_tag="PXG19_000565"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL6065892.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
     gene            complement(3937..4884)
                     /locus_tag="PXG19_000566"
     CDS             complement(3937..4884)
                     /locus_tag="PXG19_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6065893.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENVQFEEVYKLYIFDKKLRLLLLDIIERLEVNIRNIMAHE
                     LGRENPLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSIEWHRKNEKE
                     IPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEINIVRNLSAHH
                     SRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVAILWFLVSQT
                     STNYHWLDKFEDLLNDFPNLPNTKVELMGFNREILEKIK"
     gene            complement(5096..7213)
                     /gene="spoT"
                     /locus_tag="PXG19_000567"
     CDS             complement(5096..7213)
                     /gene="spoT"
                     /locus_tag="PXG19_000567"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL6065894.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(7323..7604)
                     /gene="rpoZ"
                     /locus_tag="PXG19_000568"
     CDS             complement(7323..7604)
                     /gene="rpoZ"
                     /locus_tag="PXG19_000568"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL6065895.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(7707..8204)
                     /locus_tag="PXG19_000569"
     CDS             complement(7707..8204)
                     /locus_tag="PXG19_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL6065896.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(8229..9251)
                     /locus_tag="PXG19_000570"
     CDS             complement(8229..9251)
                     /locus_tag="PXG19_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6065897.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(9291..10721)
                     /locus_tag="PXG19_000571"
     CDS             complement(9291..10721)
                     /locus_tag="PXG19_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL6065898.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(10826..11749)
                     /locus_tag="PXG19_000572"
     CDS             complement(10826..11749)
                     /locus_tag="PXG19_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL6065899.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(11866..13293)
                     /gene="miaB"
                     /locus_tag="PXG19_000573"
     CDS             complement(11866..13293)
                     /gene="miaB"
                     /locus_tag="PXG19_000573"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL6065900.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(13510..14010)
                     /gene="crr"
                     /locus_tag="PXG19_000574"
     CDS             complement(13510..14010)
                     /gene="crr"
                     /locus_tag="PXG19_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL6065901.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
     gene            complement(14095..15816)
                     /gene="ptsI"
                     /locus_tag="PXG19_000575"
     CDS             complement(14095..15816)
                     /gene="ptsI"
                     /locus_tag="PXG19_000575"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL6065902.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     EFYQKLN"
     gene            complement(15938..16195)
                     /gene="ptsH"
                     /locus_tag="PXG19_000576"
     CDS             complement(15938..16195)
                     /gene="ptsH"
                     /locus_tag="PXG19_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL6065903.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            16456..18030
                     /gene="thiP"
                     /locus_tag="PXG19_000577"
     CDS             16456..18030
                     /gene="thiP"
                     /locus_tag="PXG19_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL6065904.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            18027..18677
                     /gene="thiQ"
                     /locus_tag="PXG19_000578"
     CDS             18027..18677
                     /gene="thiQ"
                     /locus_tag="PXG19_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL6065905.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            18984..20398
                     /locus_tag="PXG19_000579"
                     /pseudo
     CDS             18984..20398
                     /locus_tag="PXG19_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(20514..21317)
                     /gene="map"
                     /locus_tag="PXG19_000580"
     CDS             complement(20514..21317)
                     /gene="map"
                     /locus_tag="PXG19_000580"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL6065906.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(21403..22068)
                     /locus_tag="PXG19_000581"
     CDS             complement(21403..22068)
                     /locus_tag="PXG19_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL6065907.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
BASE COUNT         6422 a         4738 c         4100 g         6852 t
ORIGIN      
        1 tcttatcaaa ataaaaattt atcttatcat ttttctcaga acctagaaaa actcccaaaa
       61 acttttctcc tgagtacttt tttacaatag attcagctat tttcacttgt aatggagtgt
      121 aacaaataat caaattcatt taaatttact cgcaagcaga taatgagtta ggataattga
      181 caaacaagaa atcatcaaac caataaaagc tcctattaat aaaataatta cctttttagg
      241 tttatctttt attacaggat aatccggcga agcttggtaa ctaaaagttt gtgttttaac
      301 tgtctttgtt ttttcaaata acggctctag ctgtttaagt tggtaatcaa tttgataata
      361 acgtggtgga taaacaacac ctttctcatt agccacatca atttgagcct ttaggtattt
      421 ttcccctaac ataaataaat atgaactatc tgctaatttt gaatcagaaa gggagatttt
      481 agtatcactt aaagctgctg caatatttga tgcatctgat tgattaaatg cttttgaata
      541 ttctttaata cctgcttttt gtgcagtttc ataggcttta tttaagtttt ccaactgaac
      601 cgacttattc acagataaat cttcctgaat taatgatttt tcatattgta atgcagtaag
      661 cacattttgg aaatcgacta gaaaatcttc taattcaaca gcaaatgctt tgctattaat
      721 gaattgaacc aacttaccaa gggtgtcctg cgcctccata ggtgtctctg cagaaaaaga
      781 tagtgtacga cctattgcat taggatcttt ctttgcatca ggaataataa agctggtatt
      841 ttcattactc aaattggata aaactgtgcg ttgcccctgc tcatcttttc cttcagctaa
      901 cgtcttatac acattggaag tgataaaaaa ttcattttta gtatcttgag attgtgctaa
      961 tcggttaaaa ttgttgaaca aactcgcaga caatgcattt ggatcaacag gatctacacg
     1021 caaaatccga ctatattctc tgcgaacatt taaatactca cctaactctg ttaatttagg
     1081 ggcaataact gttgccttag acgtccattg ctcttttgca gtaaatgcat aaataccagc
     1141 aagtaatgtg gtaatgaatg ttgttataac aatccaccat tttttatccc atagagcacg
     1201 aaaaatctca attaaatcaa tctcatccga gctttgctca tgacttttta ctgaatctgc
     1261 catagtttcc tctaaaattt gcatgtttct gtacagcatt atacataatt ttcttatttc
     1321 cactgcattc atttactctt ttttaagatt gcacttccta tgtaattatt agataatatc
     1381 caatcacagt aaaattttga tctaaaacaa aatgagcgat attcaaattc ctttaatctt
     1441 tactgatgcg gcggctcgta aagtaaaaag cttaattgag ggcgaagaga acccgaatct
     1501 tcgcttgcgt gtgtatatta cgggtggggg ctgtagtgga ttccagtatg ggttcacctt
     1561 tgatgatcaa gtcaatgagg gagaccttac cattgagaat caaagcgttg gcttggtggt
     1621 tgacccgatg agcctacaat atttaattgg tggcacggtg gattataccg aagggctgga
     1681 cggctcacgt tttgtcgtga ataatccaaa tgcaagctca acctgtggtt gtggttcttc
     1741 ctttagcatt taattcactc gaattattgc cttattcaat atcagtctca caagtaaatt
     1801 ttttactaaa aatgaccgtt tgtattaaac aaaatagcct aacttattga gtttaggcta
     1861 ttttttatca ttatgtttgc agttgccttt acaacaaagt gggacaggat cttcgcctcc
     1921 ctcactcaaa gggttgcaac gcagaatacg cttaaacgct aaatacccac ctttaattgc
     1981 tccgtggatt ttaatcgctt cgaccgcata ggtggagcag gttgggtaaa atcggcaacg
     2041 tgggccaatc aatgggctga tagcatagcg atagaaataa atcggtagca atagaatttt
     2101 ggctaatagg ctgagacgag gtggctgatt tatggattct gttgtgccgg ctttttgctc
     2161 aggcgaatgt gtcttgacca tagtttttcc aatgtttcaa acagcgttgc gttgtctaat
     2221 ttgccaatgc cgccttttgc cacaaataca aaatcgaaat tcggcaattc gtgttgcttg
     2281 aggcgaaaac tttcacgcac tatccgctta atgcgattac ggtcgtgagc ccgttttaaa
     2341 tgttttttgg caacagttaa gcctagacga ggattttcta gattattctc tctagcaaga
     2401 agagtcattt ggggtgtgct ggctcgaagt ggctcttcaa acaccgcctt aaattgaacg
     2461 ggagctaaca aacgtagctc ccgagagaaa tttagcttct tcacacttaa tcagaaaggt
     2521 gttttggctg gttctgcaat tatgcagata aagatttacg acctttagca cgacgacgcg
     2581 ctaacacttg acgaccgttt ttagtagcca tacgagcacg gaaaccgtga gtacgagcac
     2641 gttttaatac tgatggttga aatgtacgtt tcattgctta tctacctaaa atttaaaaag
     2701 ttggcataaa atggtttctg ccaaacaagg accataaaaa agagttgcaa ttctacaggc
     2761 aattaaaata aaaagcaaga aacaatccaa gcacaactcg ggttgtttgc aaaatttttg
     2821 aaaaatacga ccgcttgtta taatcgcaga aatttatatt ggtttgtggc ataatcgaaa
     2881 aaatattaac tattgatgag aaatagaaca atgaatcaac cccaacaaat aggtattttg
     2941 ctggctaatt taggtacgcc agatgaaccc acgccaagtg cggtgaagcg ttatttaaag
     3001 caatttttaa gcgatcctcg tgtgatcgat ctaccaaaat ttaaatggca agcaatccta
     3061 aactgcatca ttttgccaag acgttcgcca aaagtggcaa aattatatca atcagtatgg
     3121 agcgaagaag gctcaccgtt attggcgatt tctcggcaac aacaacgagc ggtacaacgc
     3181 tattttgatg ccaaaggcaa aaatgtggtg gtggaattgg gaatgtctta cggcaatcca
     3241 agtattgaaa gtgcgaccga taacctcatc aagcaggggg ttgagcggat tattgtgcta
     3301 ccgctttatc cgcaatacag tagcactact accgcttcgg tgtttgatgc gtttgccaac
     3361 ggtttaaaag cacagcgtaa aatcgtgccg tttgatttta ttcacagcta tcataacgat
     3421 ccgctttata ttcaagcgtt ggctaactct attgatgtta aacctgacga gttattactg
     3481 ttttcatttc acggcattcc taaacgttat gaaacggaag gtgattttta cgccaagcat
     3541 tgccaagaaa cagcagaatt agtggctgaa aagctaggtc tgccaagaga aaaatggtat
     3601 ttgtctttcc agtcccgttt tggtgatgaa gagtggctac agccttatac cgatcaaacc
     3661 cttgaaagct tcccacaaaa agggataaaa aaagtggctg tcgtttgccc gggcttttca
     3721 gcagattgtt tggaaacctt agaagaaatt acagaagaaa accgcgagaa ctttgaacat
     3781 gccggcggag aatcttatcg ctacattcca gcgttaaatg cgagtggcga tcatatcaag
     3841 gcattagtaa aattaatcga agcgaaaata taatataatt tgggcggata ataaatccgc
     3901 ccatttttat ctacacccta taggaatgta cttattttat ttaattttct ctaatatttc
     3961 tctgttaaat cccatcagtt ctacttttgt attcggtaaa ttagggaagt catttaataa
     4021 atcttcaaac ttatctaacc aatggtaatt agtgctggtt tgactaacta aaaaccacag
     4081 aatagctacc cttccgaaaa ttctctcctt tgctttgtca tccagcgata agtttgaaaa
     4141 atactgctgc atttttttaa atttcgacca acgaggatca tctagcttag gaatagcaat
     4201 atcgctaaat tttctgttcc aaatacgaga atggtgagca gaaaggtttc ttacaatgtt
     4261 tatttcattc aaccaattct ttaacgtatt ctcatctaca ttaaatttct tagcaatttt
     4321 cctttggtgt tgcccattta acaatgagta aaacttagat aatgcaccaa aatcccaggt
     4381 ttcagtaatt acccaaaaag ggatttcctt ctcatttttt ctatgccatt caatagaatc
     4441 atctttacta cgcttaattt tattagctgt agtttctagc caatttgcat aagcataatt
     4501 agatttccat tgaaatttta agaacttttg attaatcaga gaataatctt cataagccaa
     4561 aggattttca cgccccaatt catgagccat aatattacga atattaactt ctaaacgttc
     4621 aataatatcc aataataaaa gccttagttt tttatcaaaa atatatagct tataaacttc
     4681 ttcaaattgt acattttcga gaaaattttc gctaagccca ccatcttgat taggctttct
     4741 agatatatgc caaaatccag ataaacgata ataccctacc tgagataatt ttttctctgc
     4801 atagctttta tcatttatga gcattcctct agatatgagt agttctacta attcgtgata
     4861 ctctttatgt ggttttgtag gcataaaatt gaaggcattt taagaaaggc aaggacgtag
     4921 cttgacactc taagtcgatt acatttagta aacctcaggg acaggggcta cgccacgatt
     4981 gcaagggatt atacatttta gctgattaaa gtcaaaaggt ttcatcaatt aataatagca
     5041 atactgtact tttaaggact ataattgcaa aaaactgata aaattttacc gcttgttact
     5101 gcttacgggc cgcttttaca acacctttta cacttaatag cttacggaga atcagctcag
     5161 aatgctcttt attttccaca gaaatttgta ctctcacttg atagatattt ccttctcttg
     5221 cctcgctatt aatgctgcca atgttgctat ttaatttggc aagcgttgat gtgatccccg
     5281 cgagtacccc tggttcattg ataatatcca gtacgatttc cgtttcaaat tgaatcgctt
     5341 tttctttggc aatttcccat tccacaggta aataattact cggctctgtt gcgtaatctt
     5401 tcacattacc acaacaagca ttgtggattg ccaatccttt acctgaactg acgtgagcaa
     5461 taatttcatc acccggtata ggtaagcaac agtttgcaaa actgataagg cggttctcaa
     5521 tcccttcaat tttaagcggt tgattatttt ctggattacc atcagtatca attaatagtg
     5581 gctcccctaa taagcgttga gcgataacat tactcatttg gttacctaga ccaatttcag
     5641 ccagtagctc atcaaagctt gataaacgta gctcgtctaa tacggattga atagtttctg
     5701 aacacaattc atcaagtgag cgtaaattca ttgcccgaac tagctgtcta cgcccaagtg
     5761 caatcgcctc atcgtgctgc tgatttttaa gcgattgacg aattttagcc ctcgccttac
     5821 cacttactac aaaatttaac cacgatgcat ttgggcgctt accttgctcg gtaataattt
     5881 ccaccgtctg tcctgttcgt agcggttctg aaagtggata cggattgcga tcaaccatcg
     5941 cacctacaca acgatcccca atgcctgaat gcaccgcata ggcaaagtca atagcggtag
     6001 cattcgccgg caattcaaca atacgccctt tcggggtaaa gacgaaaata tcgtcagaga
     6061 acagatccga tttaacgcta tcaataaatt ctgctgtatt gccggcactg ttttgcaatt
     6121 caacaatact ttgtagccat tgctgggctt tgagttgaac ggtcgtgtta tggtgcgact
     6181 cgccctcttt gtaacgccag tgagctgtta cccccatatc cgccattttg tccatatctt
     6241 cggtgcgaat ctgtacctcc accggtacac cgtgcgggcc aatcatcgaa gtgtgtaaag
     6301 attgatagcc gttcggtttt ggcacggcaa tataatcttt cacccgtttc ggacgaggct
     6361 tatacagtgc gtgcatctgc cctaatacac ggtaacaatt atctacatta tcaaccacta
     6421 ctcggaaagc ataaatatct aaaatcgaat gaaaatgttg atctttctgg cgcatttttt
     6481 ggtaaatgga atagagatgt ttttcacgcc catacacacg ggcttcaatt tgcacctctt
     6541 ctaaccgacc acgaatatca tcggcaatgc gttgaattag ctctttacga tgtcctctgg
     6601 cactggcaat agccattttc agtacccgat aacgttgcgg gtgcattgcc tcgaagccta
     6661 aatcttccaa ctcgttttta atatgctcta ttcccaagcg atgtgccaac gggctataaa
     6721 tctctaaggt ttctttcgct atacggcggc gtttatccgg acgcaaagca ccaagcgtac
     6781 gcatattatg ggttcggtcg gcaagtttaa ttaacacaac ccgaatgtct ttggtcattg
     6841 ccaaaatcat tttacggaag tttgccactt ctgcctcttg gcgggtgcgg aattttaatt
     6901 tatccagctt agaaacgcct tgtacaatat ctgctacgct ctgtccaaat tccgccgcca
     6961 gttcttcttc ggtgtaaggt gtatcttcaa tcacatcgtg caacaaagcc gcaatcaccg
     7021 cttcttgatc gagcttcatt tccgcaataa tcgacgccac tgctaccggg tgagtaatat
     7081 agggctcacc gctagagcgt gtttgtccct cgtgagcatc acgggctatc acataagcac
     7141 gttttacacg ctcaatctgc tcgggtggca aatagccttg aataattcga tctaaaggtt
     7201 caaaaagata cacgttatac ctcaacaaca gaaataaaaa tggacaacga atttgcaaat
     7261 tttgaggaaa atcctaccgc ttgcagactc aattgtccat tctctattta cgaaaaataa
     7321 aattacgctt cgttgctcat ttcagttaaa aatgaaatcg cctcttgctc cgccgcttct
     7381 tgcttaatag agtcgtgatt ttccagctga tccataatgt cagttgtaat taaaccttct
     7441 tcaatttcac gtaatgcaat cacggtcggc ttatcgtttt cttcaggcac aagtggctca
     7501 cgggtgtgaa gttgtaattg tcttgcacga cgtgcagcaa ttaagattaa atcaaaacgg
     7561 ttgccaattt tctccgctgc ttcttgtacg gttacacgag ccataaattt actccaaaga
     7621 tttattcggt tttattcata aaaagattgc gaattataca gaaattccgc caattccgca
     7681 atgaaagcgg gctaaattca caaaatttat ttggtattca gtaaaatcgc caataattca
     7741 gcctcaacct ctttgccgaa ttttcccatt ctaaaatcgg cttttagttg ctcgaattgc
     7801 tcagggttcg ctgccatttt atcttttaaa aattgcggaa attcagataa cactaattct
     7861 gttttgccat tacgaatatc aaaaatagtt ggaatttttt gcgcagaaat gaccgcttgt
     7921 tgctgttcat cgctgtcaaa atgtttgcgt tcctgattat ctttgcgagc cacatatttc
     7981 accttaatgt taggattgag ctttgccatt cgctggaaat aagccacaat ttccacacaa
     8041 tcggggcaat atggctctgc cattaccagc cagtcccctt gcacgccaac agcttgcagt
     8101 ttttcttccg tatctgtgga aagcttgacc tccacataca cttctaattg attttcacga
     8161 tcttcatcgc tgttaaattc taaatattcg taaaaatgtg ccataatttt gtcttttcct
     8221 atctcatctt aaatggattt acgccataaa atttcacaat caactttaac gtcatctatt
     8281 ttctgttgcg ctaacttttg ctgaattaat tcaaaggtac gttcggcaat ttgttggtgg
     8341 tcttgcttaa ttgaatgaat atgaaaaggt agtgcattca gtaaatggtg atcatcaaag
     8401 gttgctaaat gcagttcttg agtcaataat ttatccattt gttggtgttc agtcagatag
     8461 cgcattactc cctcaagtag ggtaaaagag gctgtgaata ccgcttctgg gagcctgcca
     8521 agtttttcaa ctatctgagc gaacatttga tagcccgatt ccggctgata gtcttgatgc
     8581 agaacccaat tttcatcaag tgccaaatgt gactgctcca aaccttcacg gaagcctttt
     8641 aaacgatttt gacttggcga gagtgaaagt tgtccaccta agtaaaaaaa ctcttttaag
     8701 tgataagccc gtacaatatt ttccaccaac atactgatac tttgtgtatc attactggtg
     8761 atagaaggga tattcaaccc agaaatatag cggtctagct gtaacattgg ggtatattgt
     8821 gccgcatttt gataataagt cggctcatta tgtgtcggag cagtaatcag taaatctacc
     8881 tgtctgtcta ataaacgctc tatcgctttc ttctcacctt caaaggtatc atccgagcaa
     8941 gcgatcacta gctgtaaccc gttttcacgg cataatttct ctaaggttct tgaggtcaga
     9001 gcaaagccat aattcgttaa atcgggaatg actaaaccga tcacattcgt gcgttgagcc
     9061 tgtaatgatt ttgcatatac attagcacga taaccgtgtt ttttagcgat ctctttcact
     9121 ttttggcagg tttcggattt gattctaaaa tcattgcccc gcccatttaa aatcatactg
     9181 actgttgttt tagatacgcc gctgagttcc gcaatatcac tgagcgttag gcgtttttta
     9241 gtcacactta tctcctttta gcataaaaat gggcattact gcccattgct ttattctacg
     9301 ctaattggca atacttttgc tactttcact tgaatcggac gagagctttt tacgacattt
     9361 tcacgcttag cgataaaaaa gcgtgaagtc agcacttttt ccccgccgtt tacgaaaatt
     9421 tccaccacag aacggtcaaa gaaaatctcg attgtctcta attgttcaat tttgcaatga
     9481 cgaaccgagc caaatttttc catcaattct gtttgttcgg tttggctacg atctaagctc
     9541 aacaccccat tttcaaaacg taagctgagc ttttgcccct gttcattgct gaaaaaatcc
     9601 aacacaagcg gttgattttc cacagaaatt tgcaagtagg cagtatccaa attctcgatt
     9661 gcaaaatttt ctgacatttc gaccgcttgt aattcgccta cattcacgat tgggttttgt
     9721 atcactttgc cgttttgcag ggaaagttta cgaggcaatg tcagcattga atgccactga
     9781 tatttatcag ttgggtaagt gagatcaggc aagccgaccc agccaaacaa aatgcgatcg
     9841 gaattttcca ccgtttgcgg tgcgtaaaag tcaaagccgt agtccagctc ttcaatatgc
     9901 tctgcccgta atctgttgcc gtttagctcg ccaagtgcgt aagtggcgtg gtagttattt
     9961 tggaattgat ggctttcacg cagtttgcct tgtggcgacc acacaaacag atctttacca
    10021 ccaagtgaga acagatccgg acactcccac ataaacacat tgctgttatc aaaattgtgg
    10081 acttccagtt ctgcgattaa acggggtgtg gcatttaaat cgtccatttc ataaattaac
    10141 gccgtgccgg tcaagttttc acgctgagcc cccaacacaa aacgaatttt gccctctgcg
    10201 gtaaggtaag gtttcgggtc acgcacgtgt tcggtgtagc ctgccggtgc ttggtcgata
    10261 atgcaacgct tttccaataa tttgcccgat ttatcaaaaa tcgcgatatt ttggtgagga
    10321 atgcgggcat tatctgatgg gcggcgtgta ttgccggtgt aaaaagcgac aatcttatct
    10381 tgccataaaa tcgccccacc tgaataacag ccgtgggatt caaacagctc atcgggaatc
    10441 agcaaatccc ctttactgaa cgtttgaaaa tcggtagtga tgaaatgctg ccaatgtttc
    10501 attccatgta atgccccata aggaaaccat tgggcgaaaa tatggtattt ttcaccatcg
    10561 aaaatcaagc cgtttgggtc attaaataag cctgtttcgg gagcgagatg ataggttggg
    10621 taaaaatcgg gatcagataa aacggtttgg cgaagagcgt ttaattcgcc ctcgctttgt
    10681 gcgtgcaggc ttttgtattt gccgttgttg aaaatgtgca tagagtgttc ctgtcatttc
    10741 agaaattacg atggtgcaag cgtccacgct tgtacccttt tgtaaaaaat gaggcacaag
    10801 cgtggacact tgcgccatca ttacattatt ccgccaaaaa tgcgtctaac tccgctttat
    10861 tcggtaatgc cgacatcgcc ccttttgctg tggtggctaa cgcaccggaa gcatttgctt
    10921 tgcggatcac ttcaactaac acagtttcat cgtgccaatt cggcgtttga gcaagaccgg
    10981 ctaataatcc gctgacaaag gcatctccgg caccggtggt atccacaggt ttcaaggctt
    11041 tgccggcaac gacttggctt tttccgttga aatggtagat tgcaccgtct ttgccaaggg
    11101 tgataataat caatttctcc ggatactgag cggtaatagc ttgtgtggct tgttccaaag
    11161 tttctgtctc ggttaataag gtcagctctt cttcggaaaa tttgagaata tccgccatcg
    11221 ccaccacaga atttaccact gttttcattt catcaaggct cttccagagc gattcacgca
    11281 agtttggatc aaacgaaaca tagccacccg cctttttcac tcggcgaatc ccttcaatgg
    11341 tagtggaacg ggatgggtcg ttaatcaagg caatagaaca gcagtgtaag aaatcacctt
    11401 ggttaaattc aggtaaatcg ccgatttcta aaaattggtc ggcactcgga tttaccataa
    11461 aagtaaaact acgctcaccg ttatctaagc caacaatcac ggtggaagtg cggtgctgag
    11521 cgtctaaaat catctgtttg gtgcaaacat tttctgcctg taacacttct cgcataaatt
    11581 tacccagagg gtcgttaccc acacgcccga taaatcctgc ctcaacccct aaacgagaaa
    11641 cgcctactgc aacattcgcc ggagcaccac cggcacattt taaatagtga tgttcgccgt
    11701 cgggaattaa atccaccacc gcatcgcctg ttacccaaat cttactcatc tcatacacct
    11761 ttaattagtc acaaaacacc aagctaaaac gatttagcat ttattcgatt atatactaaa
    11821 agaccgcttg tacataccta caagcggtca ttttttcttt aatttttaca gattaaccac
    11881 gtatttacct acacctaaat catcttcttt acgagtgcgg gcaatcacgc tttctgccga
    11941 ttccaccaca cgtaatccca tttggtcttc ggtacgaatc acttcgccac ggagtgagtt
    12001 ggtataaaca tcggtgattt tcacatcgac aaatttgcca atcatatccg gtgtgccaac
    12061 aaagtttact acacggttag tttcggttct gccggttaat tccatcaagt ctttcttaga
    12121 cgggccttca accaaaatgc gttgttctgt accgagcatt gcacggctaa attgcattgc
    12181 ttggtggttg atgcgttgtt gtaaacggga taatcgctct tttttctcat catcggagac
    12241 attatcaggc agatctgccg ctggtgtacc cggtcgagcc gagtagataa agctaaagct
    12301 catatcaaag ttcacttgct cgatcacttt cattgtttgc tcgaaatcct ctgcggtttc
    12361 gcccgggaag cctacaataa agtccgaact aatttgaatc tcaggtcgaa cagcacgcaa
    12421 tttacggata atcgctttgt attccaacgc tgtgtggtta cgcttcatca ttgttaatac
    12481 acggtctgaa ccactttgaa tcggtaaatg taagaaactg accaattcag gtgtatcacg
    12541 ataaacttcg ataatatcat cggtaaattc aatcgggtgg ctggtggtgt aacgtaagcg
    12601 gtcaataccg tcaatcgctg ccactaagcg taataattcg gcaaaggtac aaatgccgcc
    12661 atcaaaagtt tcaccacggt aagcatttac gttttgaccg agtaaattaa cctcacgcac
    12721 accttgtgcc gcaagttggg cgatttcaaa taatacgtca tccaccgggc gggaaacctc
    12781 ttcgccacga gtgtaaggca caacgcagaa cgaacaatat ttattgcagc cttccataat
    12841 tgaaacgaat gctgtagggc cttcggcttt tggctccggc aagcggtcaa atttttcaat
    12901 ttccgggaaa gaaatatcga caatcgagct tttaccgcca cggatttggt tgatcatttc
    12961 aggcaaacgg tgcaaagttt gtggcccgaa aacaatatct acataagggg cacgatcacg
    13021 gatatgctcc ccttcttgtg aagccacaca accgccaaca ccgataatca ggttcggttt
    13081 atcttttttc cagtttttcc aacgcccgag ttgcgagaat actttttctt gtgctttttc
    13141 acggatagaa caagtgttta gcagcaacac gtctgcatct tcagggtttt cagtcagttc
    13201 aaaaccgtga gtagagttta ggagatccgc catttttgat gagtcgtact cattcatttg
    13261 gcagccccaa gtggtaatat gtaatttagc cataacgttt aaaattaata aataattcaa
    13321 taacttagaa aagaaaagcg taaagcaatt tattattttt gacttaaaat aaacccttta
    13381 cgcaaaattt gtggcgttat tttaccttgt tgcctatttt ttatctataa ataatcgcca
    13441 tttatccgat tttacctaaa acaaaaaagc cacgatcttc catcgtggct tccagctaag
    13501 taggaggtat tatttggtta aggttaaaac cacgctttca ccggcaacaa cttggccatt
    13561 taatttagat aagttgctga tttcatccat atttgaaatc acgattggtg ttaatactga
    13621 tttggctttg ccttcaagta gagctaaatc aaatttaatg atcggctcgc ccacttttac
    13681 ggtttgacct tcctgtgcaa ggcgagtaaa gccttcgcct tttaattcaa cagtatcaat
    13741 accgaagtga acaaataatt ccacgccttc ttcagattca atcgaaaaag cgtggttggt
    13801 ttcaaaaatt ttgccgatag tcccatttac tggagcaacg atagtgtctc cactcgggcg
    13861 aattgccaca ccgtcaccta caattttttc agagaaaaca acatcaggca catcttcaat
    13921 atttacgatt tcacctgtta atggcgcata gattttgatt tcttgactct ctttttgttt
    13981 tgagccgaat aatttatcaa ataaacccat cttaaaatct cccttagata ttagatacaa
    14041 aattctcgta cattttatac gagaattttg tatttgtatg ctaaataatt aaaattagtt
    14101 taatttctga taaaactcat ctactaagcg ttcaatatct gcagcagttg gctgagcaag
    14161 cgcctcatca gctaatgctt tagcatcggc aaaattaatt gagcgaatga gttttttaac
    14221 gtgtggcaca gagataccgc tcatactaaa ttcatctaat cccataccga gcaacaacgc
    14281 agttgcacgc acgtcaccgg ctaattcacc acacatacct gtccatttgc cttcagcgtg
    14341 tgaagcatca ataacttgct tgattaagtt taagactgat gggcttaatg ggttatataa
    14401 atgagcaata atttcattac cacgatctac cgcaagtgta tattgggtta agtcattagt
    14461 accaatacta aagaagtcgg cttcttttgc aagatgacgt gcatttaccg ctgctgatgg
    14521 ggtttccacc ataataccta gttttaagtt ctcatcaaaa gcgtgacctt ctgcacgtaa
    14581 ttgatctttc aattccgcaa cgatggattt taataaacgg atttcttcca ccgaaataat
    14641 catcgggaac attaccgcta aattaccgaa cgcagaagca cgtaataccg cacgtaactg
    14701 agtatctaaa atttcacggc gggtgaaacc gatacgcacc gcgcgccaac ctaagaatgg
    14761 gttcatttct ttcggtaaat caaggtatgg taactcttta tcacctccga tatccatcgt
    14821 acgcagaatg accatttgac cattcattgc ttcaacaatc tctttgtagg cttgaaattg
    14881 ctcttcttct cccggtaatt gagtacgatc cataaacaaa aactcagtac ggtataaacc
    14941 aaccgcttca ccaccgttgc gtaatacacc ttccacatca cggatagtac cgatattccc
    15001 tgccacatca actttatggc catctaatgt ttgagcaggc aactctttta atttggctaa
    15061 ttcttctttt tccgcattta atttctcttg taatgctttg aaattagcga ttttttcttc
    15121 cgatggattt aaatgtactt cattgttcac tgcatctaaa atcagaaaat caccagtttt
    15181 aactagggaa gtaacattgt tagtaccaac aatggcagga agctctaggg aacgagccat
    15241 aatagaagtg tgagaagtac gaccaccgac atcggtaata aagcctaata ctttatctaa
    15301 atttaattga gctgtttcgg aaggggttaa gtcataagcg actaaaataa cttcatcttg
    15361 aatatcacca agatctacga tattcatatt taaaatattg cgtaccaagc ggttaccaat
    15421 atcacgaata tcacctgcac gttcttttaa atattcatcg tcaatttccg caagcattga
    15481 agcctgcatc tcaatcactt tacttgctgc aacatccgca gtcacaagat tatcagtaag
    15541 gtaactcaaa atttcttctt caagctcttc atcttctaag atcatcaagt ggccttcgaa
    15601 aatcgcctct ttttcctcac ctaatgtacg gcgagctttt tctttaatcg cggttaattg
    15661 agcagctgct ttttcgcggc ctgtaaagaa ttttgctttt tctgcctcaa cttcgctttc
    15721 agtaattttg cgagtattta gtacaatcgg ctcttctttt aaaaccaatg cttttccaaa
    15781 tactgcacca ggggaagctg cgatacctgt aatcataatt gtgtccttaa tttaagatga
    15841 tgtaaaaatc atctggatgt tacatagcaa aacactttat tgtagcttat taagctacaa
    15901 taaagtgaca taaatcttaa atccgagaat agaaaaatta ttctaaagta ggaatcaaat
    15961 caactaagaa atcaactgct ttttgctcat cttcgccgtc cgcagaaatt gtaattgttg
    16021 tgccttgagt caaacctaat gtttgtaatt tgaataagct ttttgcactt gcacttttac
    16081 cacctgaagt cacagtgata tcagaagcaa aacctttagc tgcttttaca aattcagccg
    16141 ctgggcgagt gtgtaaacca tttggagcgg taataacaac atcttttgag tacataaaat
    16201 cttcctctta aatttgaaag ttaaaaaaat ttgttttaat ccatttattt tgcgcacgca
    16261 actttactac aaattcaaat taaaaacacg ctaaaaagcg caaaaactcg tcgtatcacc
    16321 ctgctaaata gggtgttttt taagctaact taaaaatcat ttgtcgaata tcaagattct
    16381 agcacacact taagcggaaa tgttacaata atttcgctac cacttctttc acttatattc
    16441 taaatttgga gcaatatgct tagcacatta accaaaacaa ccgcatggtt tatctacttt
    16501 agtattattg ctctctatgt ttttagtcta tgggcgttaa tggactatca ccaaaatgat
    16561 accttatttg ttttttccga tataacggcc acggtcgctt atagcctact tcaagccagc
    16621 ctctctgcgg taatttcact atttttaggc agcctactgg caagatcttt cttttatttg
    16681 gactttaaag gaaaaaattt actctataaa accatttcgt ttatctgggc attaccctca
    16741 ctagtaatta tttttgcggt aattggcgta tttggtaact caggctggct agccaaactt
    16801 ttccaacaac tcggttggaa ttggcaattt aatttatacg gcttgcacgg catcattttg
    16861 gctcactgcc tgtttaacat tccgtttgtg atgaaatatt ataccggagg gcttcaattg
    16921 actccaagca gtcgctttca gcttgcggct caattaaacc taacaggttg gaattatatc
    16981 caaattgtgg aactaccgat aatcaaaact ttgctgcctt atatgtttat gactgttttt
    17041 ctggtctgct ttaccagttt tccaatcgta ttaatgttag gcggtagccc aaaatacagc
    17101 acgcttgaag ttgccattta tcaagcggtc acttttgaat ttgattttgc aaaagccctc
    17161 atcttaattg gggtacaatt tgtagtgggc attggcttac aattagtaat gaattatatc
    17221 tcgacttctg cactcaaaaa gctaaaacag caacctaacc gagtagaaat ttggaaacca
    17281 aagcctaccg gactggctaa actcggctta caagcggtta tttttttgca aagttttgca
    17341 ataattctac cgcttgtcag cgtcatttgg gcaggactaa gcgtgtcaaa actcagtgag
    17401 cgtttgctca accctacttt atggcaagct actcagtatt ctttatactt aagtttaatt
    17461 gcttctatat tcgtaatcac aatcagctat ttgattgcac ttgaagctcg ccaattactc
    17521 tatacaaaag ccaagctcag atatagcatt ctcaccgcaa tcaccctatt ccccttactt
    17581 ctgccgatct ttttattatc ggttggtttg tttattttat taatgaatag tgaactctca
    17641 agcgaggcat tactgctact ggtcgggata tgcaacggct taacattact gccatttatt
    17701 tacccaatgc ttttctccgc aatgtggaat agcctcacct cgcacgacaa attagcacaa
    17761 ggacttgggc taaaggggct tcgccgttgg tggattgtgg aaaaaaatca actaattcga
    17821 ccgcttgtta ccgtatttgc gttagcaatg tcatcgagct taggcagttt caccgtcatt
    17881 gcttttttcg gcaacgctga tttcagctca ctcccttatt tactctacca acaacttggt
    17941 agctatagaa ccgaagatgc tgccgttacc gcactcattc tgatgttatt tgcgttacta
    18001 ccattcttat tcagcaagga taaactatga tcgaactgga tctccatttc acttacgaac
    18061 aaatgaatat gcactttcag ctttctgtca aaaaaggcga acgtattgca gtggttggcg
    18121 aaagtggcgc aggcaaaagc acattactta atctaattgc cggttttgaa aaggcagaaa
    18181 gtcagcaaag ccagctgtgg ctaaatcaga aaaatcatct tgataccgaa gttgcacaac
    18241 gtcctgtttc aatgctattc caagataaca atattttccc gcacttaacg gtagaacaaa
    18301 acatcggctt agctttagta ccaagtttgt cgctcaatcc gaaacaaaaa gcacaggtta
    18361 aacaaattgc cacacaaatg gggattgaaa ccttccttca gcgtcaagcc gatcagctat
    18421 cgggcggaca aaaacagcga gtggcattag ctcgtacttt gttgcgggat aagccgattt
    18481 tattattgga cgaacccttc tccgccctcg acccgcaacg ccgagccgaa ttacagcaaa
    18541 tcgtgtttga catttgccaa agcagaaatc taaccctgtt aatggtaact caccaactat
    18601 ccgaaagcct atttctattt aatcgggtga taacggtagc agatggggag attgtttctg
    18661 atctctcccc tctttagcaa agcagatctg ctaggttcta aatgtaggga cgccacgctg
    18721 gcgtacgcaa cgatgtcaat tccaacaatc taacggtgaa tgatgttccg cacggatact
    18781 agcgttattc atttttttca gaactcgccc cctactttag caaagagggg aactgtaact
    18841 aatattacct ccctattccg ctattctctt ccccaaaatg tgatctactt cacaaatttg
    18901 gaaatatttt aaatcttctc ttttttagct aaaccgattt agttaaaatg caaccgatta
    18961 ttttttatga aaggtaaatt caaatgaact atccaaaaat tgcagaacaa acgattgcaa
    19021 aattaggtgg caaagaaaac attaccacac ttgcccactg tgcaacccgt ttacgcttaa
    19081 ccattgctga tgaatccaaa attgataaag aggcgattga aaatattgaa ggcgtgaaag
    19141 gtcaattctc tactcccggt caataccaaa ttatttttgg atcaggcacg gtaaatgaag
    19201 tgtatgccca aatgcaaaaa caaatgggta tggcagatat gtccacctct gaagtagcgg
    19261 ctgccggtgc agcaaatcag ccattactac aacgtttggt aaaaggctta gccgatattt
    19321 tcgtgccgat cattccggct attgtggctg gcggtttgtt aatgggtatt cactcaatgc
    19381 taacggcagt cggtttcttc tgggaaggtg aatctgttgt tagccgttat ccgaatattt
    19441 ccgatttagt tgatttcatc aacactattg ctaacgcacc atttgtattc ttacctgtat
    19501 tactcggttt ctcagctaca cgcaaatttg gcggtaatcc attcttaggt gcggcacttg
    19561 gtatgttatt ggttcacccg gcacttgcag acggttggaa ctatgccaaa accttaatgg
    19621 aaggtaacat caaatactgg aatattttcg gcttagaaat tgaaaaagtg ggttatcaag
    19681 gcacggttat tccaactatc gtttcggctt gggtgttagc aacccttgag aaaactttcc
    19741 gtaaatttgt gccaagctat ttagataact tggtgacgcc aatgatgtca ttatttatcg
    19801 ccggtatttt agctttcact gtaatcggac cattgggtcg tgaagcaggt tcagcgattt
    19861 cagcaggctt aacgtggtta tatgacagct taggctttat cggtggagca attttcggta
    19921 cattctacgc tccaatcgtg attaccggta tgcaccaaac ctttattgcg gttgaaaccc
    19981 aattattagc tgaagtagca caaaccggcg gtacatttat cttcccgatt gcagcaatgt
    20041 ctaacattgc acaaggtgca gcctgtttag gtgtagcttt tgcaatgaaa gatgccaaag
    20101 tgcgtggttt agccgtgccg tcaggtattt cagccctgtt aggtatcaac cggcaatgtt
    20161 cggagtaaat ttacgctacc gccaagcctt tattgcggcg atgatcggtt caggtttagc
    20221 cagtgcattt atcgctttct ttaatgtgaa agcaattgcc ttaggtgcag ccggtttctt
    20281 aggtattccg tcgattaaac ctgacagcct tgcaatgtat tctgtcggta tggtaatttc
    20341 atttgtagtt gcatttacca tttcagccat ttgggtgaaa aaagcacaag cgaaataatc
    20401 aaaaatagat cacaaaaaag ggattaagtg ttagcttaat cccttttgtt tttaaacgcc
    20461 ttagcttaac aatgagtttc gcaagcggtc atttttcgct aaaaatttgc aaattagctg
    20521 ttgtgcataa ttcgagaaat acgcccttcg gcaatctctt catcacgaat tgtcagcact
    20581 tcacagccgt ctttggtaac tacaatttga tgctcatatt gtgcggagtg gctgcggtct
    20641 ttggttttca ctgtccaacc gtcacccatt aagcggactt cttttttgcc ggcattcacc
    20701 attggctcaa tcgtaaacac cattccttct tttaacacta caccgccatc atcggtagca
    20761 taatgcacta cttgtgggtc gcaatggaat tcagtaccaa taccgtgtcc gcaatattct
    20821 cgtactaccg aaaagccttc tttttccaca tatttttgaa tcgctgtacc aatttctttt
    20881 aaacgcaccc ccgctttcac ggtgcgaatc ccgacataaa gggactctag cgtaaccgcc
    20941 attaagcgtt tatcccgcac acttggctca ccgactacat acatcatcga gttatcgcca
    21001 tagtagccat ctttgataac cgtcacatcg atgtttaaaa tatcgccttt tttcagcttt
    21061 ttgtcatcac ttggaatacc gtgacaaacg acctcattta acgaaatgca caccgatttt
    21121 gggaagccgt gatagcccaa actggctgaa gttgccccat ttgccaaaat gtattcgtga
    21181 caaattttat ctaattcacc agttgttacg ccctctttca cataaggggc gatcattact
    21241 aaaacatctg aagccagttt acaggctact cgtagttttt gaatttcttc ttcgtttctt
    21301 aatggaatat tattcattac attgctctct gctatatctg ccataaaaag taaggggatt
    21361 ataccttttt tcagcacaat ccccaaacct cagtttagat ttctacttta aatcaagttt
    21421 cttcataatg aaatttaata tcacaccata aagcggtaga aatagcagta ggctcacaaa
    21481 gagtttaaac gcataatcga ccgaaccaat agtaaaccaa tgctctgcca tatattcatc
    21541 gctactttta taaaaggcga tagcaaagaa tacaaaagta tcgattaaag taccaaaaat
    21601 ggttgaacag gttggagcaa gccaccaacg cttaccttgt cttaaactat taaatactag
    21661 aacgtctaat aattgcccaa ctaaataagc tgcaaagcta gccagtgcaa tacggaaaac
    21721 aaaaaagttg aactcagtta atgcactaaa gccttgaaat tgggtttcaa agaataaaac
    21781 ggaaatcaca tagcttatga caagtgccgg aaacatcaca acaaaaataa tttttctagc
    21841 aagatctgca ccaaatacac gcacggttaa atcggtcgct aagaaaataa atgggaatgt
    21901 taacgttccc caagttgtcg gaaagctaaa ttctgttagt ggtacttgaa cttcaaagct
    21961 aatttgcact aaatagttgc taattgcgat gataaaaata tggaaaagtg aaagtaaaat
    22021 tagagaacga cgtttgttct catccgaaaa ataagtagta aagttcatat tgtatccttt
    22081 ttcgttaaat gaaaacttga ggtaagggaa ct
//
LOCUS       DANMGB010000020        22105 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.020, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000020 DANMGB010000000
VERSION     DANMGB010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22105)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22105)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22105
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.020"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(105..947)
                     /locus_tag="PXG19_000582"
     CDS             complement(105..947)
                     /locus_tag="PXG19_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL6065908.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            1007..1324
                     /locus_tag="PXG19_000583"
     CDS             1007..1324
                     /locus_tag="PXG19_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6065909.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            1415..2128
                     /locus_tag="PXG19_000584"
     CDS             1415..2128
                     /locus_tag="PXG19_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL6065910.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            2128..2622
                     /locus_tag="PXG19_000585"
     CDS             2128..2622
                     /locus_tag="PXG19_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL6065911.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            2727..4007
                     /locus_tag="PXG19_000586"
     CDS             2727..4007
                     /locus_tag="PXG19_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6065912.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(4094..5131)
                     /locus_tag="PXG19_000587"
     CDS             complement(4094..5131)
                     /locus_tag="PXG19_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6065913.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            5353..6051
                     /locus_tag="PXG19_000588"
     CDS             5353..6051
                     /locus_tag="PXG19_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL6065914.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            6062..6364
                     /locus_tag="PXG19_000589"
     CDS             6062..6364
                     /locus_tag="PXG19_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL6065915.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(6485..7786)
                     /locus_tag="PXG19_000590"
     CDS             complement(6485..7786)
                     /locus_tag="PXG19_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6065916.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(7919..8893)
                     /gene="secF"
                     /locus_tag="PXG19_000591"
     CDS             complement(7919..8893)
                     /gene="secF"
                     /locus_tag="PXG19_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL6065917.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(8903..10744)
                     /gene="secD"
                     /locus_tag="PXG19_000592"
     CDS             complement(8903..10744)
                     /gene="secD"
                     /locus_tag="PXG19_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL6065918.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(10784..11077)
                     /gene="yajC"
                     /locus_tag="PXG19_000593"
     CDS             complement(10784..11077)
                     /gene="yajC"
                     /locus_tag="PXG19_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6065919.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            11278..11835
                     /locus_tag="PXG19_000594"
     CDS             11278..11835
                     /locus_tag="PXG19_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL6065920.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(11876..12844)
                     /locus_tag="PXG19_000595"
     CDS             complement(11876..12844)
                     /locus_tag="PXG19_000595"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL6065921.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(12970..14133)
                     /gene="galK"
                     /locus_tag="PXG19_000596"
     CDS             complement(12970..14133)
                     /gene="galK"
                     /locus_tag="PXG19_000596"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL6065922.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(14143..15189)
                     /gene="galT"
                     /locus_tag="PXG19_000597"
     CDS             complement(14143..15189)
                     /gene="galT"
                     /locus_tag="PXG19_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL6065923.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            15402..16253
                     /locus_tag="PXG19_000598"
     CDS             15402..16253
                     /locus_tag="PXG19_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL6065924.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(16339..17424)
                     /locus_tag="PXG19_000599"
     CDS             complement(16339..17424)
                     /locus_tag="PXG19_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6065925.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(17446..18426)
                     /locus_tag="PXG19_000600"
     CDS             complement(17446..18426)
                     /locus_tag="PXG19_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6065926.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(18529..19627)
                     /gene="prfB"
                     /locus_tag="PXG19_000601"
     CDS             complement(join(18529..19551,19553..19627))
                     /gene="prfB"
                     /locus_tag="PXG19_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL6065927.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            19883..20791
                     /locus_tag="PXG19_000602"
     CDS             19883..20791
                     /locus_tag="PXG19_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL6065928.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            21092..21733
                     /locus_tag="PXG19_000603"
     CDS             21092..21733
                     /locus_tag="PXG19_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL6065929.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            21900..>22105
                     /locus_tag="PXG19_000604"
     CDS             21900..>22105
                     /locus_tag="PXG19_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL6065930.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT         6338 a         4554 c         4695 g         6518 t
ORIGIN      
        1 gtttggacag gcacaggacc ggtccctata aaatttgttt ggaagtgttt ccgtctagac
       61 gtctataata tattttttga acgttttagg caaatagaat ttgtttattt ggctaaatat
      121 gcccttaaac cagccaacgc atttttggca tcttctaccc ctaaatcgta cattgcttgt
      181 attttattta catccgtttc aaggcgactg attttgactg ttctgcttgg acgaatcaca
      241 aaaatctgtt gtttttcatt gagttgaata atctgctcaa cggcttgatt atattccgca
      301 tagcggtttt cccagcgttg cactaatttc ggatattttt tataaaaacg tttaaacagc
      361 cacatcgagc ttggtttctt acggtattca agtgggcgag taagcaccac gataattttg
      421 tcatatccca tttcaataaa tttctgcacc ggaatactgt ctgacacacc accgtctaaa
      481 tattttttac cctcaatttc gactattttg gatacaatcg gcattgagga agtagctcga
      541 aaggcttcca tttgctcgaa cacattgtca attttgatgt attcgggctc accggtttcg
      601 acattggtta cagtaaccca aaagtccata ccggaatcct caaaggcttg ttggtcaaac
      661 ggatccagtt tggaagggag ttcatagtaa gcaaaatccc gattaacgat attgccggtg
      721 gtaagcaagc tgtgtaaccc catataccgc ttatctttag cgtatttttt gttgtatcgc
      781 aacgccctac ctttttgttt tgaaggcaaa ttcacgccaa ataacgcacc ggctgaaaca
      841 ccgattgctc catctatatg aatatgttca tctaaaaata catctaacac gccggcagta
      901 aaaatacctc gcaaaccacc gccttccagc actaatccaa ctttcatatc attctccctg
      961 taatttgtgt attataaccc gaattatctt gctaggagaa atcacaatgg ctgatgcaga
     1021 atttatggat ttcctgttag atcaactaag cccgatttcc ggtttgcgtt cgaaaaaaat
     1081 gtttggtgaa tattgcttgt tttttgataa taaaattgtc gctattatca gcaaagatta
     1141 tcgcattttt gtcaaagcta atccgcaaac cttgccgtta ttcttagctg aaaatgccga
     1201 acaatttcac tattttgcta aaggaaaagt gcaaaaaatg cactactgga gcattccgga
     1261 attagcgatt gaagaagccg atgaactggt caaatggatt cggctaggct tacaagcggt
     1321 gtaatttagc gaaaattttg taaaaaaacg ctaaaatatg cccgcttgtt aggggggggg
     1381 acctaatatt tctatacttt aagattttat atttatgaac caaaaaaaat tagtttcttt
     1441 gattgtcgtt attgtgttgg caatcatttc tcaaattttt agcttttttg ataaaaaaga
     1501 gccttcaaaa gcacaagaaa aatcgaccca gagtagtcag tctcatcaag tttcaacttc
     1561 atcactaggg aactatgatg tgcagatgaa aaacgaccgt ttgaaacagc atattgtaga
     1621 taccgattat tacaccttag cgttgtcgtg gtcgccggcg ttttgccaaa aacaaaagcg
     1681 aaataatcac ggtaaaattc cgtctcattt ggaatatcaa tgtggtggct cagcggattt
     1741 tggttgggtt attcacggct tatggccgca aagtggcaag gcaagaagtg ttgatgaaca
     1801 ccctcgttat tgccaaggcg atttgccgat ggtggcagag cagacgatta agcaatattt
     1861 acctgaatcg ccgggggcaa ctttgttgca aggcgaatgg gaaaaacacg gtgcttgtgc
     1921 ctttaaccaa gcggatgatt acttcgccaa acaaaaagag ctatttaatc agctcaaatt
     1981 accggatacc gaaatgtcta aattagcact gtttaactgg atgcgagcca ataaccctca
     2041 tttgcaaaat gtctatttag ggggtagcaa agatgagctg tatatttgct atgataaagc
     2101 atttcaacca atggattgcc cacgctaatg gcagatcttc gccaactgaa aatgcaggtt
     2161 cagcgccaat taaagcgtga tcttgaacgt gcaaatcact attttaatac cacttttacg
     2221 ccaccaagta ttagctatgc ggtgcgtggc gtaaaagccg gtgtggctta tcttgaacgc
     2281 aacgaagtac ggtttaatcc tgtgttattg caagaaaatg aacaggcatt tatccgccaa
     2341 gttgtgccgc acgaactggc tcatatcttg gtttatcaac attttgggcg ggtacaatct
     2401 catggtaaag agtggaaaat gatgatggaa accgtactgg gtgtgccggc ggaaatttac
     2461 cattgttttg atacccaaag tgtgcaacag caatttagtt accaatgtgc ctgccagact
     2521 caccagcttt cgattcgccg acacaatgcc gtgatgcgag ataaaaaaag ctatatttgc
     2581 cgtttatgta aaactcaact ccattttgta gaaaaaagtt aatgtggaga aaagttaaga
     2641 gaatgttacg atttagctag acattcctgt ttaaacgcct acaatttgcc gtagttttta
     2701 tttttaattt tatttccgga gtatttatgg aaacaattgt aattgtaggt ggcggtgcag
     2761 gcggtttgga gcttgcaacc tatctaggca acaaattagg gcgtaaacaa aaggcaaaag
     2821 tggtgctgat tgaccgcaat gcaacgcatt tatggaaacc actgttgcac gaggtggcaa
     2881 ccggtactat tgatgaggga actgatgcgt taagctatcg ggctcacgct aaaaatcata
     2941 gttttgaatt tcagcaaggt acgctggtgg cggtagatag agagaagaaa acggtttcac
     3001 tcgccccgat ttataatgat caaaaccaac ttctcgttaa agaacgccat atcagttatg
     3061 acaaattagt gatcgcgatc ggcagtaaat ccaatgattt tggcaccaaa ggggttgcag
     3121 aaaattgcat tttcttagat ggctcagagc aagcaaaaga tttccaaaaa cgaatgatgg
     3181 agctgttttt acgtttttca catagtgaaa ataaagatgt aaaaattgcg attgtggggg
     3241 ggggagcaac aggtattgag ctttcagcgg agctttacca cgtggtgaaa aatttaaatt
     3301 cttacggctt tggtaaatta aaccgtgcca gcttgaaagt cactttaatt gaggcaggcc
     3361 ctcgtttgat tccggcatta ccggagaaag tgtcggtttc tgctttccac gaattgaaaa
     3421 aagcgggtgt ttcggtgcgt ttaggtacga tgattaccga agctcgtcca gatgggctaa
     3481 tgacccgttt aggtgagaaa attgaggcgg atattatggt ttgggcggct ggcgtgaaag
     3541 cccctgaaat tacccgtgaa tttggttttg aaactaaccg cttgaaccaa attgagatta
     3601 aagacacgct acaaaccacc gttgatgagt cagtgtttgt cattggcgat tgtgcatcat
     3661 taattcaaga tggcaagcca attccaccca gagcacaagc agcccaccaa atggcaaccc
     3721 gatgtggtaa aaatattgtg gcattgatag aaggaaaaga gatgaagccg tttcgattta
     3781 acgataaagg ctcactgctt tccttctcaa aattcggcac ggtgggtaat ttaatgggga
     3841 atttagtgag cggtgatatg tttattgaag gtaaaattgc ccgcttggct tacctctcgc
     3901 tttatcgaat gcaccaagtg gcattacacg gctgtgtcaa aaccggcttg attgtgttgg
     3961 tagggcaaat taaccgtttc ttaagaccaa caatgaaact acattaaaca aaaatccgca
     4021 tcaaatgatg cggatttttt atggcaaaat aacaagcggt tattttcttg cctatttttg
     4081 caaatactca cgcctagttt gctaatttaa tttccgccaa ccatttatca attaagcgtt
     4141 tgccctcttc gctggaacct gctttttggt aatcaatttc cacaaagtct aacgcttcgg
     4201 ctttggttga ttgtggagca acttcggcgt tgatgtttgt tggggtttgg taaacaccgt
     4261 gttttttcca aggaatttcc tgtgcttctt ttgaaagcac ccaatccata aagagtttgg
     4321 cgttatctaa attacgggca tttttgataa tgctgacacc gcctaacgca tagcccactt
     4381 taccttccgg aataatggct tcaataggcg cacctttttc tttttcagtg gcataactat
     4441 gtacaaagcc taccgtaacc gcactttcac cacgagcaag attgctggtg actagggtgc
     4501 ttttcacata ttgcgaaacg ttattgttga gttttttcag ataatcaaag gttttctctt
     4561 cgccccataa ggttgaaaga gtggtcataa acgtataagt cgtgccggag ctacgaggat
     4621 caggcagttg tacttcacct tttaagcgag gatctgataa atcttcccat tttttcggtg
     4681 cctcaatgcc tagtttggcg agtttttcgg tattcacgcc taaccctaat acaagcatat
     4741 aaacgataga ggtaaattta ccttgttcac tttcaactaa ggatttaaat tgtggcagaa
     4801 tttcagcttg ttttggtgaa cggtaggctt ccagtaagcc taattcgcct gcttgaaagt
     4861 gaggttcaat cgtgccgcca taccaaatat ctgcctgagg gttcgatgct tccgctttta
     4921 cttttccgaa aattgtaccg gttccgccgt gaatgaattt agtttcgaca ttatatttgt
     4981 gtgaaaattg cttggtcatt tcttcacaaa cattattttg taccgagcaa taaacagtta
     5041 aacgaccttc tgcttgtgct gcttgagctg ataagaaaat gccagaggcg attaagatcg
     5101 attttaatga gattaatttg agtacgttca tcactttcct gaaaacataa aataaaaggt
     5161 agtgaagtct agcatttcaa agcgctggtt gaaaatagtt aattgcaatg aagtagggca
     5221 attgtgccta ttactttaat atttaccaac tatttgcaag ttttagcaaa aaataaccgc
     5281 ttgtagtagc tcttgctatt ttgtcaaaat tcagaataat aaatgccttt agtctaatgt
     5341 taaattttag ttatggaaaa tagttggaaa tatgctttta aattaatcac gccgattttt
     5401 atgggctatt ttgcggcagg ggttgcttac ggaatgcttg ccaccaatgc cggaatgcct
     5461 gcgtggttta cgattgtaat gagttttacc gtggtatcgg ggacggcaca atatgcagcg
     5521 attccatttt ttgtctccgg tgttggggcg gtgtcggtct ttctcagtac gcttttaatg
     5581 agtctacgtt ttagttttta caccttaaat atgatggagc ataagccgat atccaaagcg
     5641 aaaagtctgg tcgctattgc aggtttaact gatgaaggct ttgcggtgtt atcttcatta
     5701 ccgaaagagc aaaagcaagc attattcttt aaaatcgctg tgctatgtgt ggcttattgg
     5761 acattttcca cgattgtcgg tgtgttgtta ggcgattcag tggcgaacta tattccgcat
     5821 ttggattttg ctctgccttg tttgtttgca attttagcct atgagcaata caaaaaccaa
     5881 aaacaatgga aaccgattgt gattgcgtta atcggatttt tacttgctcg tcagattacc
     5941 gaaaccagcg tgttattggt ggcaatttta gtagcgattg tcattgtggc tttattacct
     6001 caatcttctt caatcaaact agagaaagga gtagaaaatg agcacaaatg atactttgat
     6061 aatgtttgca gcattagtgc tcggctcgca aatttgtcgt tttttgccgg aatttttacc
     6121 gaaaaaggtg ttatcttcgc ccattttgca aaaattaaac aaaatgttac cgcttgtgat
     6181 tatgctttta ttgcttttaa cgagcctaaa ctttcctaaa aacggggaag gctttaactt
     6241 aatattggca caaattctgg ctttaatagg cgtattaggt agctatgttt ggcttaaaaa
     6301 taccttttta agcgtagcgt tggggatttt cggtgtgaat gtatttttat ccctgttagg
     6361 ataaatacca aaggtcattt tataggagcg aaacaccttc gctcaatcat taacagatgt
     6421 ggggcgaaaa atttttcgcc ccttatttat cacaagcggt ctttttcttt caattttttg
     6481 caaattaaat cgctaaatca aacgcataga aggcaactaa aataatcgca ataattactg
     6541 tacctaggtt taatttattg gcttcgcctg aaattaagcg accaatcaca agggtggcga
     6601 aacctagcat aatgcctgtc acaatgttgg cggttaatac gatgaacacc gcacagacta
     6661 aacctgacat tgcacctaca aaatcgctga aatctaattt agagacatta cttagcatta
     6721 ataagcccac atacattaat gccggtgcgg tggcatagct tggtactaag aatgcaagag
     6781 gttggaagaa cagcataaat aagaaaccga taccaaccac tacagcggtt aaacctgttt
     6841 taccgccaac ggctgtacct gctgccgatt caatatacac tgccgctggt gctgtaccaa
     6901 ataagcccga taaaattgat ccgaatgagt cagaagttag ggctttatcg ccattgataa
     6961 tttgtccgtc tttatctaat aaaccggctt gccctgcaac cgcacggata gtacctgttg
     7021 catcaaaaat agcggtcatt actaacgcaa acactaccgg taaaatggcg gtatttaatg
     7081 ctcccataat atcaagattt aggaattgcg aattttcacc aaaactcggc attttgaaaa
     7141 agcctgtgta ttttacgtta gggtcaaaaa ttaaacctac gatggtaata gcaataatga
     7201 cccataaaat actgcctttt actttcagct tttctaaccc gataatggcg gctagaccga
     7261 ttaatgacac taaaaccgga aatgaagtga agtcccctaa tttaaccgga atatccatac
     7321 cgctattgac cactaattta acgttagtgg cggcaataat cagtaagaat aaaccaatac
     7381 caattccagc accgtgggca atgctgcttg gcaaattacg taaaatccaa gtacgaatac
     7441 cggtagcaga aatcaaggta aatactacgc ccattaagaa aatcgccccg agtgcaacag
     7501 gaatagaaac ttgttgccct aatactaagc taaaggcagt aaaagcagta agtgaaatcg
     7561 cacaaccgat tgccattggg gcatttgccc ataaaccgat taagatagag ccgagacctg
     7621 aaactaaaca ggtggcaata aataccgatt cggcaggaaa gcctgcttgg cttagcattc
     7681 ccggcacaac gatgacggaa taaaccatgg ctaaaaaggt agttaaaccg gcgatgattt
     7741 cttgacgagc gtttgaacca cgctcctcaa atttaaataa cgacataaga acctcaaaag
     7801 aagaaaatga aaggggaaat tttaggatgc ggaattttac agaaatttaa aataattagc
     7861 aaacgtttgc gtaaaaagtg aaagaaaagc aggaataaat cctgcttttg tttgatggtt
     7921 agtaatcgat gaaagcgtct tgatctgccc cttccttttc aactttaggc tgaaccatat
     7981 gttcacgttt tagcccaagt tgtagtgcca caccaattgc aatgtagatg gatgaataag
     8041 taccgaaacc gataccgatc aataatgcaa gtgagaaact atgaagcgtt ggaccaccta
     8101 gatagaataa ggctagtacc acaaagaggg tggttactga tgtcattaaa gtacgcgaaa
     8161 gtgtttggct caaggaaata tcgataattt caattgagct ggagcgacga actttagaaa
     8221 agttttcacg tacacggtca aacaccacaa ttgagtcatt taacgagtaa ccgacaacag
     8281 ataaaatcgc tgctacaaag gtcaagtcaa tttcaatctg taagaaagag aagattccga
     8341 tcgtcactaa tacatcgtga aataaagcca caataccgcc taccgctaaa cgccactcaa
     8401 aacgtgttcc cacgtaaata agtagcatag caagtgttgc caaagtggca taaatagccc
     8461 cttgggttag ctcttccccc acgtttgggc caacgaattc aatgctcttg atagtcgcat
     8521 tcggatctaa tttttgatgg atcatctcca tcactttatt cccaacagac atatcaccgg
     8581 cactggcggc aagtcggatc attaaatctt tttgactgcc tgtggtttgc actaaggcat
     8641 tgccgtagcc gctattttca agctccgtac gcagttttgc taaatcagca ggttgtgaaa
     8701 attgagtttc gattactgtc ccgccggtaa aatctaaccc ccagttaaag ccttttgtcg
     8761 caatagtaaa aatgcataaa gcagttacaa tcagcgaaaa aatgaatccg acatagcggt
     8821 atttcataaa ggggattaat ttataaggca gtttaatttc tgctacatct tgttgtacat
     8881 tttcaatagc catttttcca ccttaaatcc aaagtttctt cacgcgtttg ccaccgtaaa
     8941 cccagtttac aagcattcga gtacctgtaa ttgcggtaaa catagaaata attaccccta
     9001 atgcaagcgt taccgcaaag ccttttaccg gacctgtacc tacaccataa agcacaagag
     9061 aagtcaaaat agtggtgagg ttggagtcaa aaatacttga gaatgcgcca ttataacctt
     9121 cgtggattgc ttgttgaatt gggcgaccgt tacgaatctc ttctttgatc cgctcgtaga
     9181 ttagtacgtt ggcatcaact gacataccca cagcaagtac gataccggca attcccggca
     9241 tagtaagggt tgcaccgatt aatgacatta aaccaatcgt taagatcata ttcacaatca
     9301 aggcaagaga ggcaaatata ccaaatactt tataaaaggc tagacagaac aggatcgtta
     9361 agcctaagcc taaaatacta gcttccatac cttgtttaac attatctgcc ccaagagaag
     9421 caccgatagt acgctcttcc acaatcacga ttggagcaat caacgcacct gaacgtaata
     9481 ataccgcaag gttttgagct tccgctggtg aattaatccc tgtaatctgg aattgattac
     9541 ctaaacgggt ttgaatggtt gcaacgttaa ttacctcttg gtgtttttct aaaatgactt
     9601 taccgttagc atctttacga cctgaatctt taaattcggt ataaagtgtt gccatcggtt
     9661 tttggattgc cattttagta atttcaccca tcatctcgcc gccttcggta tcgagtcgga
     9721 tactcacttg cggcaagcca cgctcatcag tgcctgaggt tgcatcaata atatgttcac
     9781 cccctaacga aggtttacgg cgtaatacaa ctggctcgcc atcacgggtg ttttgcagtc
     9841 ctgaatcagc cggcacaatg cctttcgccg cagaggccac attggcttcg gtattgacta
     9901 accggaactc aagggttgca gttgccccta aaagctcttt ggcacgagcg gtatcttgca
     9961 cacccggtaa ttcaactacg atacgatctg caccttgacg ctgaatggtc ggctcagaaa
    10021 cgcccaattc ctcaacacgt ttacgcaaaa tagaaaggtt ttgttcgatt gccatcgtgc
    10081 gagattcaga aagagcttgt gctgatggcg ttaaggtgac tttattatca tttaccaaaa
    10141 tatcaagcgt tgggtgagag agacgcacta aacgcactgc tttttcggcg gtatcgttat
    10201 cggcaaattc aacctcagtt gcaaaatttt cgcctttttt gaccgcttga tattgcaatt
    10261 tttctttacg gaaatcacta cgcaggctgt cttgcaaagt gtcttgttgt tttgcaagcg
    10321 ccgtgttcat atccacttcc attaagaaac gaacaccgcc aagcaagtcc aagcctcgct
    10381 tcatcgggct accgccaatg tcagacaacc actgtggcgt tgctggtgca aggtttaagg
    10441 caacagagta gttattcccc aatgcttctg agattttttc tttggcaggc aattgctgtt
    10501 cgctgctttc gagacgaacc aaaatcgagc cattttctaa cacggcagat ttcggctgaa
    10561 tattcattgc tgaaagtgtg gattgcactt gagacagtgt ctcaggtgtg gcttgttgcc
    10621 cacgagtacc ggaaatttgt accgaaggat catcgccata taaatttgga agggcatata
    10681 aagcaccaat ggcgatcacg aagatcacca ttaaattctt ccatagaggg aaacggttta
    10741 acacaataac tccccgaatg ttaaagttgg ataagagggt tgattaaagt gattttaatg
    10801 aaccttttgg taacaccgca acaacgaaat cacgtttgat ggtcacttca gttgtgtcat
    10861 ttaatgcaat cacgatgtta tcgttatcag cggtcacttt ggtaatttta ccgattaaac
    10921 caccgctggt taatacttca tcgccttttg tcaagcttgc cagtaaatca cgttgttgtt
    10981 tttggcgttt tgcctgagga cgataaatca taaaatagaa aattgcaccg aaaataatca
    11041 ggataaagat catttccatt ccgccacctt gttgcataaa aactccttaa atgtttgagt
    11101 ggtataaaaa taagtgttat aaaaaacgcc tgttaaaata ccataaattc aatgaattaa
    11161 cgagtagaaa aattcatcga atgcttttct tttaaacaaa aatttgagta gaatcagcac
    11221 ttttagttta ggattaggtt cttggcgtgt tcttgcgctg acacaatagg agaaaaaatg
    11281 aaaaaattat tcgctcaagc ggttattttt ggggcttttt ttgcaagttc cgcttttgct
    11341 cacaatgtgc aattaaatca agcattacct gctgtttcgg ttgcaaaaga cggggaattg
    11401 gcagtggcag gtggaaaggt tagctataaa aattggcatt catcatctct ggcaggtaaa
    11461 gtccgtgtta ttcatcattt tgccggtaga agttcggtga aagaaaaaaa tgaagatttg
    11521 atgacagcaa ttaaaaatgc cggttttgat cgctcgaaat accaaacggt gacgattgta
    11581 aatgctgatg atgcgattgt cggcacaggg gtatttgtga aaaatagtgt ggaaaacggc
    11641 aaacttgaca atcctcacag ccaagtagtg ttagaccagc aaggcagtgt gaaaaaagcg
    11701 tggggcttaa aagagaaaga gagctttatt gcagtgctgg ataaatcggg taaggtacaa
    11761 tttacctctg agggcaaact ctctgcaaaa cagattcaag aagtgattgg gttggtgaaa
    11821 acattaacgc aataaccagt gtttttatgg gcggattttg tatccgccca tcattctaga
    11881 taataaatcg ataacttatc gtgtgatgat actcttctcc tgcttttgtt atcccgccaa
    11941 attggagtaa ttcaggctgg tttagtgaat ttgggaaaaa ctcaggctct aatgctacac
    12001 cagcgtaatc ttcatattcg cctttagtca aattaggttg tccttttagc cagttgccgg
    12061 tgtaaagttg taatgctggc atggaggtgc ggagttccat ttttaagtct tccacggcta
    12121 aacaagcggt cggattttca ctattttttg caagatgaaa ggagtgatcg taacctttta
    12181 ccgctttttg gtcgtcatca gccaataaat cttgcccaat ttttttagca ttgcggaagt
    12241 caaaactggt actctccact tttttcagtg gagcattagg aataccgctg gcatcaaccg
    12301 gtaagtatcc gtctgcatta attatcagct cgtgatctaa aatcgtctct gaaccttgca
    12361 aattaaaata ggcgtgatta gttaagcaaa gcggtgtatc ttggttagca acggcatcaa
    12421 agctgatttg aagctcattc tctgttaagc gatactccac aaaagctttc acttcgccgc
    12481 caaatccttc ctcgccatct gcaaaaaaat aactaaattt gaccgcttgt tcgctttggc
    12541 tttcaagttg ccacactatt ttatctgccc caagctcgcc accgtggaga ttatgttcac
    12601 cgttattttt agcgagctgg taggttttgc cgtttaagcg atattcggca ttggcaatgc
    12661 ggttagcgta acgcccaatg gtcgctccaa agaaagcggt ctgtttttgc caattttttg
    12721 cagacgtggt gactaatact tcccgttcct cgttcggcat tttgacaatg cacgaaagcc
    12781 aagaagcccc aacatcagaa agggtaatgc gtaaaaacgc attttcaagg gtgaataatt
    12841 tcatcggttg accttaatta cctagcacgg catagccgta ctaggttaag cataattcag
    12901 ccctgctagg gctgaggtta tttattttag agtagcggag ctacttcctt atgcttaacc
    12961 cggtacgctt tagcgtgccg ggcattctcg caccccatcg gaggcagtac aaacgtggaa
    13021 ggtttcttta atgccggttt gcttttcgta attgttagca acggcttggc ggagatcttc
    13081 cactttgtca tttggcacta ggcacacgac acaaccgcca aagccgccgc cagtcattct
    13141 ggctccgccg tttttaccga tagcttgttg ggcgatttcg gctaagcaat ccacttcagg
    13201 gcaggtgatt tcaaaatcat cacgcattga gtcgtgagat tgagccatca actccccgag
    13261 tttgaccata tcattcgctt ttaaggcctc tactgcttcc agaactcgtt gattttcgct
    13321 gatgatatgt tttgctcgtt tatacgccag ctcattctct tcactaagtt ctgaggctcg
    13381 ttcaataaat tgttccgctg tgacatcacg caattttgct ttgccgaaga agtgggcggc
    13441 aaattcgcac tgttcacggc gactgttgta ttcgccggta accaagtcgt gttttacgtt
    13501 ggagttaata atcgcaatcg aatagccttg tggcacaggg gttggggtga tttctaaact
    13561 acggcagtcg atcatcacta aatgatcttg ttgcccgaga gcggaggtga gctgatccat
    13621 attgccgcag ttgcagccga caaatttatt ctcagcctct tgcccgatta atgcgatttg
    13681 cggtaaagaa agcggtaaat cgccgagtaa ttgagcggtt ttaccaatcg acacttccaa
    13741 tgcggcggaa gaacttaaac ctgatgacat cggcacatcg ctggtaatgg ctaaatctgc
    13801 tccttgtttg aattcggggt gtttggcttg aataaatttc accacgccac gcacataatt
    13861 cgcccatttt tgctcgcttg gctcaatcgc ctggcttaaa tcaaattcat cttgttggtt
    13921 gagatcaatg gcgaacaccc gccatttgtt gtcactacgt ttggcaaagc taaccgctgt
    13981 gccgtaattg atggcacaag gcattacaaa cccatcgttg taatcagtat gttcgccgat
    14041 aatattcact ctgcccgggg caaataccgt gcgttctgct ttataaccaa aatgttgttc
    14101 aaattgttgc aaagcgattt cttgtggttt catttcaatt ccttatttat ctttatagtg
    14161 tttggtatca cttactgcat ttaaacgttc ggcagcttgt tccggggtta aatcacgttg
    14221 gctttctgcc atcatttcat aaccgaccat aaatttacgc actgttgccg aacgcaagag
    14281 cggcggatag aagtgagcgt gtaattgcca gtgagcattt tccttgccgt taaacggagc
    14341 gaagtgaaag cccattgaat aaggaaagct gatgttaaac agattgtcgt aacgggtggt
    14401 gagctttttc aatgcaaggg ctaaatccgc tttttccgct tcgtttaaat cggtaatgga
    14461 tttgaactgc ttggctttcg gcaacagcaa ggtttcaaac ggccaagccg cccagtaagg
    14521 cacaaccgca atccaatctt cggtttctgc cacaattcgc tcttgtttgt ctaattcacg
    14581 ttgtgcgtag tcaagcaaca gtggcgagcc atattgagca aaatatttcg cttggcattc
    14641 gtcttcaatc gcaatttcat taggtagaaa attacttgcc caaatttgcc cgtgtgggtg
    14701 agggttagaa caccccatca ttgagccttt gttctcaaaa atttgcaccc actgataatg
    14761 ctctttcagc tcattcgctt gctcttgcca aactgttacc acatcagtaa tttcctcgat
    14821 ggaaagttgc ggtaaggttt tactatgatc aggcgaaaaa cagatcacac ggctttcgcc
    14881 ttgtgtatga gaaatctgaa acagcggatc atcattcggt attggtgccg gtgtgtctgg
    14941 tagcagggca gagaagtcgt ttttaaacac aaacggcttg gtgtaattcg ggttttgttc
    15001 gccggtaatc cgcttattgc cggggcagag gtaacaactt gggtcgtagc tcggtttttc
    15061 atcttgcacg atttcttctt gttgcccttg ccacgggcgt tttgcccgat gcggagagac
    15121 taaaatccat tgatttttta atggattaaa acgacgatgt gggtgatcgt tgaggacaaa
    15181 ttcgctcata taaaactcct cgaaattagt tatgtaaaga gtatagcgaa agtcagacaa
    15241 aatgactgtg acatagctca caaaataatg atgtcaagcg gtcaaatttc agaaaaattt
    15301 tgcaagtttt cctccatttt gcgatttaag gtagcttacg tggaattgaa tgtggctttt
    15361 ggtagaatag atgaatatgc aagatattaa gacaaaaata gatggaaaga ctgaataaat
    15421 ttgatgcttg gttaatgaat cataaaccta atgctaggtt aagcggagcg agtcgtttgt
    15481 tgacagagtt ttggttcttt gggttaaaag aagctagagc ctgtttattt gcgggattat
    15541 tttttattgc gatgttttcg gtaccaaaaa cgggattatg gggcttacct cgttatgata
    15601 ttttgctgat ttttgccata gtggtgcaaa ttgcaatggt gaaactgggg ctggaaacgt
    15661 gggacgagct aaaagcaata agcctatttc atttggttgg ttttgtgtta gaagtcttta
    15721 aaacatcgag taatattcaa tcttgggcat atccggattt tgcctatact aaattgttca
    15781 atgtgccatt atttactggt tttatgtatg cagcagttgg ttcttacatt atccaagcgt
    15841 ggcggttgtt tgatttgaaa attaaaagcc acctgcccta ttggttagcc actttaacgg
    15901 cactgatgat ttacctgaat ttctttacgc atcattacat tggggattac cgttggtata
    15961 ttgccgcttt tgcattaggg ctgtatgcac gtacttttgt atttttcacc ccttatgaca
    16021 ttacacgaaa aatgccactg ctgctttctt tcttcctgat aggttttttc atttggttgg
    16081 cggaaaatat cggtacgttt gccggaattt ggcgctaccc gaatcagttt ggggcttggt
    16141 ctatggtgca tatgagcaag tggagtgctt gggcgttatt ggtgatgatg acttttacca
    16201 tcattgtgca tttaaagcat atcaagcaaa cagtcagagt ctcgagcgat taacaagctg
    16261 tgggttttgg cgaaaatttt actcatcagt tattttcagt ggaattaggg gcaaataata
    16321 atttgcccct atatcaaatt atggattttc cccttccaca tcaataatca tcacttccga
    16381 ctgtgagcct aaccgcatcg gcacgcccca gaatccgtag ccggaggtga caaaataatg
    16441 cccgaagccg attttttcat agccgtaatg taatcgatag atcagtttgg taataatact
    16501 tgcagggaac acttgccctt tgtgagcgtg tcctgaaact tgaatatcaa tcggcaattt
    16561 agcatgttgc tcaatttcag tcgggcggtg gtcaagcaaa attaccggta gtttagtgtt
    16621 cacgttttgt aaaagctgtt cggcagaagg tcgatttttg actaaatcat cattacgccc
    16681 aataagggta aattttccgt taatttcggc cgtttgatcc cataaaacag taataccggc
    16741 gtcggtaatt tcttttgcaa tcgtttcttg agccccaaaa aagtcgtgat tgccaagggt
    16801 agcatacacg ccaagaggag cttttaattt ggctaaatga ggctgcattt tatcggcaac
    16861 ataaacttcg gtattgtcgt ccataatatc gcccggcaat aaaatcagat cgactttttg
    16921 ctggttgaaa atctctgcca gttggtcaag ttgcttggtt ccgaacagtt ttcctaaatg
    16981 cagatcgctt gccataccaa tgcgaagcgg tttctctaat ggtttatcca atttcaccga
    17041 ataatgtact actgttgggg tataagcgtt gtaatagcca agcccaagta agccaaagaa
    17101 tgcaaatggg taggcgattt tcagccagcg attgacggta gtattgccgt tgaatatttt
    17161 gtaaatacaa gcggtgaaaa aactgataaa aaatgcaaaa agtaacaata ccaatatgaa
    17221 tgccattatt ctaaatagcg caaaagtacg agtaagatgc aaaatcacta atccgtttgc
    17281 gactaagaaa gtgagaatac caactgtttt acggttttta cttgataaat taaataacca
    17341 gctgacagtc tttgcaaagt tgaataaaaa gagttgtaac accgcaatca caagggcggt
    17401 ggtaatgtag taacgatatt ccatattttt ccttcaataa attggctaaa cccagccgat
    17461 ttgtcttaat aaaaataagc cgatgctggc actaaacatt gagccgagag tcgtaatgcc
    17521 gatcagattt gcggctgcct cgccgtctcc gccatagttg cgtgtcattg cgtaggtggc
    17581 tgaagcaacg ggagcagaag cagccacaaa gacaatgcct agttccatcg gcggaagttg
    17641 aaacacaaat ttcccgagta gtagcaagaa aattggagca aaaatcagcc gaatcgaggc
    17701 agaaaacagc acaattttat tgatggtgct ttccactcct tgattaaatt gtttcaactg
    17761 tttgaaatta atgcttgctc cggtgcagat aagtgctaat ggtagtgtca ggctcgccat
    17821 taatttacca gcagactcaa gcggggttgg aatttggtgg cttaattcaa aatagttaaa
    17881 agttaagcct gcaatgacgg ctagaatcag cggatttctc aatatcgaca atattaatct
    17941 gccaaaattc acttttttct cgcttaacga tgaagtgagg gtaatcactg caagcacatt
    18001 aaaggtaatc accaagcacg aaatataaac tgaagcggca gcgagagctt tatcgccata
    18061 agcattgaga attaaggcaa tgcctaaaat cgccgcattg gtacggaaag tgccttgagt
    18121 gaaaatacaa cgataacggc ggttttcaat atgtcgagcc gcccaccatt ccgcccataa
    18181 atagatcaaa atcgaaccgc cgactccggt cgagatcagg ttgatttggc tggagaaatc
    18241 taacgggctt tttagcatat tcaagaaaat catcggtggc agggtaaaat taaataccac
    18301 ctttgatgcc atattgcaaa aggtatcgtc aataaatttt cgtctgcgtg gaaaaatacc
    18361 gaacagcatt aacaaaatgg ttggtaaggt aacgccaatg ctaaattgga tagagtcgaa
    18421 aagcataatg tttgccttaa atgatggcac gagtgtcttt tgcttgtacc gtagattatc
    18481 aataaagtac cagcgtggac gctggtacta tcatcaatgg aaatgaaatt acaatcctgc
    18541 ctttaagctt gcttcgacaa atttatccaa atcaccgtcc agcacttgtt gggtggtgcg
    18601 atgttccaca ccggtacggt ggtctttaat ccgtgaatcg tctagcacat aagagcggat
    18661 ctggctgccc cagccgatgt cggatttgtt gtcttccatc gcctgttttt ccgcattttt
    18721 cttgctcatt tccagctcat atagcttcgc tttaagctgt ttcatcgcct gatctttatt
    18781 ttgatgttgt gaacgaccgt tctggcactg caccacaatg ccgctcggta tatgggtaat
    18841 tcgcaccgcc gattcggttt tattgacgtg ctgaccaccc gcccctgagg cacgatacac
    18901 atcaatccgc aaatccgcag ggttgatttc aatatcaata tcgtcatcga cttccggata
    18961 aacgaaagcc gccgagaacg aggtatgacg accgttattg gcatcaaacg ggcttttacg
    19021 caccaagcgg tgaatacccg tttcggttct gaaccagccg taagcatagt cgccggaaat
    19081 tttcacggtg gcggatttaa tccctgccac atcaccgtct gaggcttcca ttagttcggc
    19141 tttaaaccct ttgctctctg cccaacgcaa atacatacgc agtaacattt ctgtccagtc
    19201 ctgagcttcc gttccacccg aaccggcttg caaatccaaa tagcaatcgg cactgtcgtg
    19261 tgggccgctg aacatccgct taaattctaa atcggcaagt tttttctcta attcgtctgc
    19321 ttccacttgg gcttcattga aggtatcctg atcttctgct tccaccgcca gctcaatcaa
    19381 cccttcaaca tcttcaatcc cttgctctaa ggctttaatc gtattgacga tctgctccaa
    19441 cattgcccgc tctttaccaa gcgcttgtgc tttttccggc ttgttccata catcgggttg
    19501 ttccagctcg gcattgacct cttctaagcg ttcgacttta tgctcaaagt caaagatacc
    19561 ccctgatcac cgcggtgcgc tcgcttaaat cagttagttg gtttttaatt gggtttaatt
    19621 caaacattgt cgttcctgtt tttgcttatt ttaaaaagat gaattatagc tgaagttaag
    19681 caagcggtcg aattttgcaa gaaatggagc aatgatcgtt tctagtaatg agatttggtt
    19741 cataaaagtt gcaactgttt ctgctatttg gctttgatag ctaaaaatct ttaaaaaaac
    19801 aagcggtcgt tttaccccat tttttgcaaa acgaccgtag cttcttgcta taatcgctga
    19861 aaaaatgctg caaggagatt ttatggcaaa gcgcccaagt gatattgatg caaccctatt
    19921 gcaactggaa atcctacgcc gtatccccaa attacccgct aaaattgatg ctaaaagttt
    19981 gcaccaacag ctattagatg ccggctttga acgggatatt cgcactgttc agcgttcgct
    20041 caaaatgtta tgcgagcatt ttgatattga atgcgatgag cggagcaaac cctttggtta
    20101 tagctggaaa atccgctcag aggggctggc attgccgatt ctcaacgaac aacaatcatt
    20161 actgctaaaa cttgccgagc aacagctgaa atatctgtta cccgcaaatt taatggcatc
    20221 aatgaaaccc ttttttgagc aggcagacag aatggtttcc ggggcgaaag acaagcccga
    20281 ataccaatgg ctaaataaag tttgctccac gccaaccagc ctaccgctga tccctgcaaa
    20341 aattaaagaa gagattttta attccgtaag ccaagcctta tttcaaaata agttgttaaa
    20401 gatcgaatat cagaaccagc acggcaaaaa acaccaagcg acaattatgc cgttggcgat
    20461 ttcacaacaa ggtgcgagca tttatttggt ctgccgttac gaagggtttg acgacaaccg
    20521 cctgttggct cttcaccgca ttcgtaaagc ggagatttct acttttagtt ttgaacgccc
    20581 gaaagatttt aatttgcaag cctaccaaga tgccggacac ctcggttttg gcaatggcga
    20641 aaaagctagc cttacctttt cgattagcag agacgccggt ttccatttaa ccgaaacacc
    20701 gcttgccaaa gatcaaaaaa ttctcgagga gagtgaaact cactaccgta ttcaagccat
    20761 agtcgctgat aatgatatgc taacctggta gctacgcaaa tttggcgaag atatttggga
    20821 tatcgagaaa gaagcgctaa aataagctaa acaagcggtc ggttttgtgg gaatttttgc
    20881 taaatagtat cgaccgctcc tccctaaaca gacctttatc ataaatacaa ctctttcaat
    20941 cagatattct tactgtctat tgatgaacga ttcgaatttt tctagtggtt gaaatttaaa
    21001 ctaattttct tgctttttgg catttttcag acttttaatt ctctccatta gcctgttttt
    21061 ttacgctctt tttcataaac aggaataacc aatgcctttt caacttactt tctgccaaca
    21121 agccggcaat cagcaccaga aaaatcaaga tgcactgttt aacggcaaag cggtgtacca
    21181 atggcaactt aaaaatgccg agagttatct gctggataac gacaaagtaa tttttggggt
    21241 tgcggacggc gtttccagcc accctcgaaa tcatcttgcc tcacattatt taatggcgtt
    21301 actcagccaa tgccaatccc ttgatagcca atggttgcga caggctcacg gcgatttttg
    21361 cgaaaaatta gcgaaagatt attttggtgc ttcttgcact tttgttgctt gtgaattaca
    21421 ccataacggc agagggcgta tggttaatgt gggcgacagt cgagcctata aaattacggc
    21481 aaacggggag tggcaacaac tgagttttga tcacaccata ctggctgaaa tgaaacagaa
    21541 aggcttggtt aaggaaggga gcaactatgc ctcaatgtat aacggcttaa ccgattgtat
    21601 tgttgccgat tttgacgccg atgatttccg cattcatata gccgaatttc aactggaaaa
    21661 aggcgagagc attttgctct gttctgacgg tttgcacgaa caactcgccc cagaagctat
    21721 tcaggcgatt taggacggat acgaaagccc gtctcatcgt ctgcaaattt gcagaaaaat
    21781 ggtaaaaatg caccgcttgt atgacgattt ttctgcggtg atttgtgaaa ttgtgtaatt
    21841 aaaacgacat tatttgtcgc attggtgctt aaaatccgca taaaacagag gagaaaaaaa
    21901 tgaaaaacga tttccattat gccgctgaat taatccgcaa tgcagacggc attttaatta
    21961 ccgcaggggc tggaatgtcg gtggacagtg gcttgcccga tttccgtagc gtgggagggt
    22021 tatggaattc ctacccaccg ctcaaaaaat ttaatttgca atttatgcag attgccacac
    22081 cgcttgccta tcaggaacgc cctga
//
LOCUS       DANMGB010000021        21966 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.021, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000021 DANMGB010000000
VERSION     DANMGB010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.021"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(13..285)
                     /locus_tag="PXG19_000605"
     CDS             complement(13..285)
                     /locus_tag="PXG19_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL6065931.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
     gene            complement(421..1011)
                     /locus_tag="PXG19_000606"
     CDS             complement(421..1011)
                     /locus_tag="PXG19_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL6065932.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            complement(1158..2222)
                     /gene="hemE"
                     /locus_tag="PXG19_000607"
     CDS             complement(1158..2222)
                     /gene="hemE"
                     /locus_tag="PXG19_000607"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL6065933.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARHRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            complement(2320..2877)
                     /locus_tag="PXG19_000608"
     CDS             complement(2320..2877)
                     /locus_tag="PXG19_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL6065934.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            2956..3246
                     /locus_tag="PXG19_000609"
     CDS             2956..3246
                     /locus_tag="PXG19_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL6065935.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            3351..3542
                     /gene="ssrS"
                     /locus_tag="PXG19_000610"
     ncRNA           3351..3542
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXG19_000610"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            3544..4122
                     /locus_tag="PXG19_000611"
     CDS             3544..4122
                     /locus_tag="PXG19_000611"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL6065936.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQASHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            4119..4907
                     /locus_tag="PXG19_000612"
     CDS             4119..4907
                     /locus_tag="PXG19_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL6065937.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            5001..6515
                     /gene="putP"
                     /locus_tag="PXG19_000613"
     CDS             5001..6515
                     /gene="putP"
                     /locus_tag="PXG19_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL6065938.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            6667..7833
                     /locus_tag="PXG19_000614"
     CDS             6667..7833
                     /locus_tag="PXG19_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6065939.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(8078..8950)
                     /gene="rsmI"
                     /locus_tag="PXG19_000615"
     CDS             complement(8078..8950)
                     /gene="rsmI"
                     /locus_tag="PXG19_000615"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL6065940.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            9024..10745
                     /locus_tag="PXG19_000616"
     CDS             9024..10745
                     /locus_tag="PXG19_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL6065941.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10720..11091
                     /locus_tag="PXG19_000617"
     CDS             10720..11091
                     /locus_tag="PXG19_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL6065942.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            11097..11681
                     /locus_tag="PXG19_000618"
     CDS             11097..11681
                     /locus_tag="PXG19_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL6065943.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            11691..12281
                     /gene="yraP"
                     /locus_tag="PXG19_000619"
     CDS             11691..12281
                     /gene="yraP"
                     /locus_tag="PXG19_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL6065944.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            12571..12762
                     /locus_tag="PXG19_000620"
     CDS             12571..12762
                     /locus_tag="PXG19_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065945.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            12755..13042
                     /locus_tag="PXG19_000621"
     CDS             12755..13042
                     /locus_tag="PXG19_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6065946.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(13189..14331)
                     /gene="argE"
                     /locus_tag="PXG19_000622"
     CDS             complement(13189..14331)
                     /gene="argE"
                     /locus_tag="PXG19_000622"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL6065947.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(14335..15126)
                     /locus_tag="PXG19_000623"
     CDS             complement(14335..15126)
                     /locus_tag="PXG19_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL6065948.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            complement(15142..15747)
                     /locus_tag="PXG19_000624"
     CDS             complement(15142..15747)
                     /locus_tag="PXG19_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL6065949.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            complement(15768..16676)
                     /gene="rdgC"
                     /locus_tag="PXG19_000625"
     CDS             complement(15768..16676)
                     /gene="rdgC"
                     /locus_tag="PXG19_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL6065950.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            16753..17571
                     /locus_tag="PXG19_000626"
     CDS             16753..17571
                     /locus_tag="PXG19_000626"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL6065951.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            17568..18722
                     /locus_tag="PXG19_000627"
     CDS             17568..18722
                     /locus_tag="PXG19_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL6065952.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(18782..18994)
                     /locus_tag="PXG19_000628"
     CDS             complement(18782..18994)
                     /locus_tag="PXG19_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL6065953.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            19322..19858
                     /gene="proQ"
                     /locus_tag="PXG19_000629"
     CDS             19322..19858
                     /gene="proQ"
                     /locus_tag="PXG19_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL6065954.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
     gene            19944..21956
                     /gene="prc"
                     /locus_tag="PXG19_000630"
     CDS             19944..21956
                     /gene="prc"
                     /locus_tag="PXG19_000630"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL6065955.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
BASE COUNT         6284 a         4366 c         4850 g         6466 t
ORIGIN      
        1 atctttaaag aattatttta ctaaatcttt taatgcttta cctgaaacga atgcaggtac
       61 tttagctgct gcaattttga tctcttcacc agtttttggg ttacgaccag tacgtgcttt
      121 acgctcattt actttaaaag taccgaagcc gattaattga acagcgtcgc ctgcttttaa
      181 gcttgcagag attgcatcaa gagttgcttc taatgctgct ttagcatctt tcttggttaa
      241 gtttgcacca gcggcgatag catcgattaa ctcagttttg ttcatagttt tatcctctaa
      301 gatatgtgtt tttaataaat gacgtaaaac gtctgagaag ttattgaaac cttgcgatag
      361 cttaattcaa agttaagatt tctcaaagta ttattaagca agattttgca aatatcaatg
      421 ctattggtta atatttaacc cgatattact aatcccgctg cttctgattt catctttaag
      481 ttcaaaaatg agatcaagat cacgtttttc acattcgttt agcaagcggt atatttgcca
      541 ctgtacgtcc agttcttctt gaatttcttc agaattcttt agctcttgct cgttcagttc
      601 tttatcttgt tgcatttcca aatagctggc aactgtgcct aatgaaattt ggctgatgcg
      661 gattgcttgt tcaagggttg aaccagcgat aatactgtga agaagttcag aaagggcttc
      721 gcaagcttcc tgtgcaggta agacaccaaa aaacgcatat tcgttcacat caggaatgat
      781 ttcttctaat ttttccagtt ggttatcgaa attaattttt gcccctttta tggttaaata
      841 ttcccagact aaatttaaaa tattttggaa taccttagct ttttcaggct gttcggttac
      901 ttcacaaaaa agctgatagt tggggtacat tctttcgcat aggcacgcca taaatgtggt
      961 gttttgccaa ggctcgaaac gttccatgcg tttatgaatc gggtttctca ttgtatttcc
     1021 ttctttattt ttcagagaga agggaacgat tttgcaaaat tctgtataaa aatgaccgct
     1081 tgcccctctc cctgattttt cttctgaaca aagaaaaatc tgtccctctc ccacaaggag
     1141 agagggcatt ttatccatta tttatgatac tgcttcgagt agttgtgaat cgcatcaaca
     1201 aacactttcg ggctttccac cggcacatct aaatgaatgc cgtgtccaag attaaagacg
     1261 tgtccgctgc cgttgccgaa gccggcaaga atgtttttta cttcttgttc gattcgttca
     1321 gggcttgcat acagcacgct tggatccata ttgccttgca acgcaacttt gtcgccaata
     1381 cggtggcgag catcggcaat atcgactgtc caatctagcc caacggcatc gcagcccgtt
     1441 tctgcaatcg cttctaacca taagcctccg cctttggtga atagggtaac aggcacttta
     1501 cgtccttcat tttctcgaat taagccgtcc acaattttgt gcatatagtg taatgagaag
     1561 gctttgtaat cctcgtgagc caatacaccg ccccaagtgt cgaataccat caccgcttga
     1621 gcaccggctt tgatttgggc atttaagtat aagatgacac tgtcagctaa cttgtccagc
     1681 aatttgtgta gaatgtgagg ctcagcgtaa agcatttttt tgattttggt aaatgctttg
     1741 cttgaaccac cttccaccat ataggtggcg agtgtccaag ggctgccaga aaaaccaatt
     1801 agtggcactt cgcctttcaa ttctcggcga atggtacgca ccgcattcat tacatattgc
     1861 aactcgtctt ccggatcagg aatcggtagc tgattgacat cattgaggct tgccaccggg
     1921 cgggcaaatt tagggccttc acctgcacca aaacttaaac ctaatcccat tgcatcaggc
     1981 acagttaaaa tatcggaaaa taggatagct gcatcgagtt cataacggcg tagcggttgt
     2041 aaggtgactt cacacgctaa atcagcgtta cggcagagtg acataaaatc gccggcttct
     2101 gctcgggtgg ctttatattc cggcaaataa cgcccggctt gacgcatcat ccagaccggg
     2161 gtcatatcca caggttcacg caataacgct tttaaatagc gatcgttttt taattctgac
     2221 attggttttt cctttgattt tggtaggggc gaaatatttt tcgccccgca taatatattt
     2281 gcaaaataga gatgaaattg aaccgcttgt atttattcat tagtgtaatg gtggcttttc
     2341 ttcggttttc ggcacgccta aagcaaaatg gctgtgcaag aataaggcta aaactcgcag
     2401 atattccaac acttcttcgc cagcctccag tagttcctcg ttattatcat cgtcactgta
     2461 gcctagtttg gcgatttcat ctaaatcatc gattgcctcg ccaacctcat cggtttcttg
     2521 ttgtaattta ggttgagcaa cgccaagtcc aagtaagaaa ctgtttgtcc attcggagat
     2581 accatcagct aaggcaaaac catcttcttc gttttgtggc aaccaaaggc taaacagcgt
     2641 gttggcttct gaaaagcttt cacttaattg ctgataaaaa tcggttaaag tgtttaacgg
     2701 ctcgatggaa aatgcgtgtc cgtcattggt aaattggtag gtgagggttt tccaagactc
     2761 atcttgaata ccgccggcaa ttaaaccgca taaaaaaccg tgaaactctg ccggtgtatc
     2821 atcaatttgt aattgtgata ccagttgttt aaattgttgg gaatctgtga tagccataat
     2881 gggattattt gtgattttgc taaagaatgg cataatatag caaaaatttt gcgattaagt
     2941 gaggatttcg tatttatgtc ggcaaataat atcgaactac agatttttgg gcaggtttta
     3001 cgcttgcaat gccctgttga acagcaagag catttactgg cttcagcaca gcgtttggaa
     3061 gagcgtgtgg tggtattgaa agagcagtcc ggcattattc agcttgaaaa agtgttagcg
     3121 attgtggcac tgaatttaaa ttatgaactg gagcaagccc aacgccaaaa tgcagaaaat
     3181 aaaaatgtgt tggtggcttg tattgagcag ttagataatt cgcttggcaa atttcaatcc
     3241 aattaggtaa tttttaatcg aattgattag gaatagagcc aaaaagattg agaatttgca
     3301 ttttgtggga ttaaatacta ggaaaaatca tcaaattccg ttactataag tcttgcctgg
     3361 ggtgtgcgtt acgagttacg tccctgagcc gataatttga aactttgagt tggacatcta
     3421 acgctggtga gcaagcttac cctaatttaa ttaggagtaa gaagcctaaa agcagttaag
     3481 tttgactccc ttgaaccgac tggttcaagg accattactg gtagcggcat ctcgggtctt
     3541 tatatgaatc aatcatcttt aaccgatctt cgtagccaat tacggcaatc aatgcggctt
     3601 aaacggcaaa gtttaactgc cggtcagcaa actcaagcag ccgaatccat tattcctcaa
     3661 gctctttcat tgattgaatc ttaccaagcc tcacatattg ccttttattt gccttttaac
     3721 ggtgaaattt ctcctattcc tttaatggaa caattacttc aacagggcaa aaagctgtat
     3781 ctgccgctgt tgcacccttt tacaagcggt caattattgt ttgtaaatta caattgcaaa
     3841 actattctaa aatttaaccg cttggggatt caagagccga tattagatgt tagaaatatc
     3901 cttccgttgc aagaattaga gatgattttt accccacttg ttgcttgtga taaagccgga
     3961 aatcggctgg gaatgggagg tggcttttat gatagaaccc ttgctcaagc acctcatctg
     4021 attagtgtcg gtttggcaca cgaatgtcag caagtcgaac aattaccgat tgagagttgg
     4081 gatatgccgt tagatcatat tattttggga gcagccaaat gaatgcaaag aaagaaaagg
     4141 aatcgagtgg aaatcaaagt ttaattcgtg gcttaacact attggaattg ttagcgaaat
     4201 tcccaaacgg ctgtccgctt gcccatttag ccgagctttc ggggctgaac aaaagcacgg
     4261 ttcaccgtct gctacaaggc ttacaacaag agggctacgt ccgccctgca ccgactgcgg
     4321 gcagttatcg tttaaccacc aaatgtttgg caatcgggca gcgagcctta agttcgatta
     4381 acattttgca tattgccgcc ccacatttag aagccctaaa tttaacctta ggcgagacgg
     4441 taaattttgc gatgcgggaa aacgatcacg ctattttaat caataaatta gaagctacca
     4501 ccggaatgat gcgtacccga gcctatatcg ggcaacaaat gcaactctat tgctcgggaa
     4561 tgggaaaact gtttcttgct tatggttcgg cagattacat tccacaatat tggcagacta
     4621 aatcggacat cattcaaaaa ctgacggtca ataccatcac cacgattgac ggaatgcaaa
     4681 ccgagctgga aaccattcgc cgtcaaggtt ttgcaatgga taacgaagaa aatgaattag
     4741 gggtttcttg tattgcttgc ccgatttttg atcaccaaca aaaagtccat tatgcgattt
     4801 ctgtttcgct ttcaactgct cgtttaaatc agctggggcg ggaaaatcta ctaccggcta
     4861 ttcaagaaac agcagaaaaa atttcagctg agctgggcgg acggtaattt tgtgttgcca
     4921 ttttgattat ttcaggtaat cttttaccct ttactcactt taatctttat acaataagaa
     4981 atcttgagga ttcattaata atgtttggtc ttgatccaac aacaattatg tttgttgtct
     5041 atattctagg aatgattgcc atcggcttta ttgcctatcg tgttaccaat aacctttcag
     5101 actatatttt aggcggtcgc cgtttaggta gctttgtgac cgcactttct gccggtgcat
     5161 cagatatgtc cggctggttg ctgatgggat tacccggagc cgtttatgca ggcggtttga
     5221 tcgaaggctg gatcgcaatc ggtttaacta tcggtgctta tctaaactgg aaattagtcg
     5281 caggcagatt acgctcgcat acagaacaca gtggcgatgc cttaacctta cccgaatatt
     5341 ttcataaccg ttttggcgat aaaacccgtt taattaagat tttatcagcg gtcatttttt
     5401 tactcttttt tgcaatttac tgtgcatcag gcgttgtggc cggtgcgagg gtatttgaaa
     5461 acttatttgg cttaccttac caccaagcaa tttggtatgg ggctgttgct accattcttt
     5521 acacctttat tggtggtttc ttagcagtaa gttggacgga tactattcaa gcttcattaa
     5581 tggtttttgc cctgattctc accccgtttt ttgtgatgta taacttaggt ggttttgatg
     5641 aaatgcaagc cttaatcgac cgtgcaggcg agatggcaca aaaagactac aacgacattt
     5701 tcaccggcac cagcgtatta ggcattatca gcttaatggc gtgggggctg ggttatttcg
     5761 gacaaccgca tattgtggtg cgttttatgg cggcagaaag tgtgaagtct cttgaaaatg
     5821 cacgccgtat cagtatgact tggatgatta tctgcttact gggggcaata ggcattggtt
     5881 attttggtat ggcatatttc tttggcaacc cggagcaagt cggcaatatc agcaaaaatc
     5941 cggaacaaat tttcattgaa ttagctaaat tgttatttaa cccttgggta gccggcattt
     6001 tattatctgc cattcttgct gcggtaatga gtaccctttc cgctcaatta ctgatttgtt
     6061 caagtgcgat taccgaagat ttatacaaag gcattttacg ccctcaagcc tccgataaag
     6121 aactggtttg gttaagccgc ttgatggtgc ttgcggtggc agcattagct atttatattg
     6181 cccaagaccc ggacagcaaa gtatttggct tagtgcgtaa tgcgtgggca ggtttcggct
     6241 cggcatttgg gcctgtggta ttgctttcac tattctggaa acgtatgaac ggttttgggg
     6301 cgattgccgg aatgctgacc ggtgcgttaa tcgtgcattt ttggggcgat attacactta
     6361 agctcgcctt accggaaatt tactcgatga tcccgggctt tattgctgct accctaatga
     6421 tcattgtggt atcacttatc acgccaatgc caagcaaagc cgtattagac acctttgacc
     6481 gtgctaataa ggcctatttg gcagaagtga aataataaaa tttggcttaa ggtctcctta
     6541 agccattttt ttacaaaaaa tttatcaaaa attattcaca atccttgtaa ggattgttca
     6601 cagcttcgct cccgttggca gagccaacgt tcaaaaagcg atgctttttg tgaccgattg
     6661 taagctatga ctaacctcct actcgctatt atttatctct cttttatcag ccttgggttg
     6721 cctgatgcaa ttttaggctc ggcgtggccg tcaatgcacc aacagcttgc tgttccgctt
     6781 tcctatgccg gtgtggtctc gatgattatg tcgattggca ctattacctc tagcttaatg
     6841 tcggacaaac tgacctacca tctcggcaca ggcaaagtaa tggtcatcag cgttgcctta
     6901 acggctttag cattgtgggg cttttcaatc agtgatgctt tctggatctt atgtttatgg
     6961 gcaattcctt acggcttagg ggctggagcg gttgatgcgg cgttgaataa ctatgtagca
     7021 gttcactacg caagccgcca tatgagctgg ctgcattgta tgtggggcgt tggagcttct
     7081 atcgggccgc acattttagg ctacgcctta ttgcaagggc gaggctggga ggcaggctat
     7141 ttcaccattt caatgttaca aatcgggcta acgctaatgc tgttttgctc actgcctttt
     7201 tggaaattac gcaagcagat taccgctgaa atcaaccatt cggcaaaacc gatgagctta
     7261 aaagaaacgc taaaaattcc gggcgtgaaa tatggcattt tagctttttt tggctattgt
     7321 ggcgtagaac aaaccgccgg actgtgggcg agtagctatt ttgtaatggt taaagatgtc
     7381 ggcttagaac aagcggctgc gttcggcagt attttcttta tcggcattac cgttggcaga
     7441 ggcgtaagtg gcttcttgac gcttaaattt agcaacagac aaatgattaa acttggttca
     7501 gccttgatct tagtcggcat tgcgatactg tgcttgccgt taggcaaata tgttacgctg
     7561 gcaagtttaa ttattatcgg gctaggttgt gccccgattt tcccgtgctt aattcattcg
     7621 acccctgcgt ttttcggcga ggacaagtct caatcggtga tcggcgtgca aatggcaagt
     7681 gcctatatcg gcgtcctgtt attgccaccg attttcggct ttattgctaa tgctatcagc
     7741 attcaattat taccgcttta cttgctgttg atgtttgcga ttatggcata tgcttatcgg
     7801 aatttagtgc gagaaacttc cccctctccc tgatttttct tctgaacgaa gaagaatctg
     7861 tccctctccc acgagtggag aggggtcgac aagcgaataa tttagctctc tccccttatg
     7921 ggacaaatgt ttacatttga acgttggctt tgccaacggc tccgaaggag cgagcgtagc
     7981 gagtattgag accgggaaat gtttcgttca gaaacatttt tcagagagag gggagtgcca
     8041 atctgcaaaa aactcacaaa atctgaccgc ttgtctgtta ctcaaaatgc tccaatccat
     8101 attgatacag ggcatttttc ttatagccga aggtttctgc cacaatggca gcggcttttt
     8161 taagcggaag ttcttggcag agtaatgtca gtaatttgat cgcttggctg gaaaaggctt
     8221 cctcactact ttgcggttta ccttcaacca ccagaacaat ttcgccttta attcggttgc
     8281 tatcctcatt tagccattca attaagttac ccagttgatc tccataaatg gtttcccacg
     8341 ttttcgtgat ttcacgcgcc attaccacat agcgatcttc gccaaaaaca gtctgcatat
     8401 cggcaagagt gtctaaaata cggtgggtgg attcataaaa aatcagtgtg cgaggctcgt
     8461 tttcaagctc ggtaagttta tcgcaacggg attttgtttt tgccggtaag aacccttcaa
     8521 aacaaaaacg gtctgaagct atgcctgaag cacataaggc agtaacagcg gcacaagccc
     8581 cggggatcgg cacaactttt accccggctt ggcggcaatg acggacaaga tgaaagcccg
     8641 ggtcgctaat cagtggcgtt ccggcatcgg aaattaacgc aatgttttcc ccttttgcta
     8701 atttttcgac taaaacgacc gctttctgct gttcattatg gtcgtgcaag gcgaaaaacg
     8761 gttttttaat gccgtagtgg ctcagcaata aaccgctgtg gcgagtgtct tcggcggcga
     8821 ctaaatcgac agatgaaagg gtgtctaacg cccgttgggt aatatcgcct aaattgccga
     8881 taggcgtggc aacaatatat aaaattccgt aatttgggtt gattccagat gaattttgtc
     8941 tgtttttcat ttgcttttag ctcgtttgat aagtaagatt tcacattaaa tttagcacat
     9001 tatattctat tgaggatctg acaatggcaa ctattttaaa ccatacaatg aaaaaggcat
     9061 tggtgccaac ggcgattgca ttattcattt ctgcctgtac atcggtaaat cctgtcaccg
     9121 aatccattaa aaatgaagcc tattcaagct cggaattcta tattaataaa gcagatcaaa
     9181 ccaaagaagc ggaagataaa atttcgtatc aacttttagc tgtacgcaaa ttaattgatg
     9241 aaaataagga atatgaggct caaaatacct ttagtgaaat tctgaccgca gagatgaacg
     9301 aggtgcaaaa gttagagtat gccttggttt ccgcccagct tgccgcctta caagggaaaa
     9361 acgagcaagc aacaagccaa ttaaaagcca ttcaagatcc gctattaagt tcggcacagc
     9421 gtttgcgtta tattcaaacc caagcccgta ttgctgccaa tcagaaagat gtgattggca
     9481 ttgtgcgtgc aagatcgcaa cttaacaatt tctataaaat gaaccgtgaa cgccaagaaa
     9541 ataacgatat tatttggcaa accttgcgtg atgcaaatcg aggaatgctg gaaaaaactg
     9601 tgcctgaagc gggtgagatg gagcttgctg gttggttggc attaattaat atctataatc
     9661 aaaatgtgac gacaccggca caaatgccac aagcaattaa taattggaaa gcccaatacc
     9721 cgagccatag tgcggttgcc gtaatgccaa cggaattaca aggggtgagt aatttccaac
     9781 aaacccagtt aaacagtgtc gcattgctat tgcctctaag tggtgatgca aaaattttgg
     9841 gtgatattat caagcgtggt tttaatgatg ctaaggctga tgactcaacc gcagtgcaaa
     9901 cttttgatac cgattcatct gatgttaatt ccttaatttc acaggcaaaa cagcaagggg
     9961 caaatgtgat tgtcgggcca ttgctcaaat ctcgtgttga tgaaatgcta cttagcccag
    10021 aaatccaaaa cgtgaatatt ttggcactga atgccactga aaatgtgcgt aatattgctc
    10081 aggtgtgtta ctacggttta tctcctgaat ctgaggcaca atcaggggcg gaaaaaattt
    10141 atcaagacgg taatagtgtc gctatcgttg cggcccctca agatgactac ggcaaccgct
    10201 cggcagaagc ctttgccaaa cgctggcgtc agcttaccaa tagcgatgct gatgtgcgtt
    10261 actacaacca accgcttgat gccgttgccg ctattcaaaa tgcaggtgtg agcaaagcag
    10321 ctttatatat tttggggaat gccgagcaag tattagaaat taaacaaggt attgatagct
    10381 caaccttaaa agatcgttta gcgatctata cctcatctcg cagtaattcg ccaaataacg
    10441 gcattgattt ttacacttca atggaagggg taaaatttag tgaagtgcca ctgttagctg
    10501 atcaaagttc tagtgaatat aaaaaagccg agaatttagc caatagcgat ttctcaatga
    10561 tgcgtttata cgcaatgggg gctgatgcgt ggtcattggc aaccaaattc aatgaattcc
    10621 gccatattcc gggctacaaa atttcaggtt taaccggtga gttaaaagcc ggacaacatt
    10681 gtaatattga acgtagttta tcttggatgc aatatcgcaa tggagctatt caacaagctt
    10741 attaataaac gggaacaagg ctcgttttat gaacaaaaag cccgagtgtt tttagaacag
    10801 caagggcttc gttttgttgc cgctaaccaa gcatttaaag gtggcgaact ggatccgatt
    10861 atgcaagacg gacaaaccgt tgtgtttgta gaagttcgcc agcgtaaaag caaccgcttc
    10921 ggttcagccg ttgagagtat tgattaccgc aagcaacaaa aatggcaaaa tgccgctaat
    10981 atgtggttgc ttaaacaaaa ccaaagttta gaaactgcaa attgccgttt tgatgtggtt
    11041 gcttttgaag gaaaccaaac gcctgtgtgg attcccaact ttttaggtta gaaagaatgt
    11101 taaataaaat ccaagataga tttaccgaaa gtattcaaac ccaaatttcc gcctctgagc
    11161 tattgccggc taaattaagt gaagcggcaa accgcattgt tgcctgtttg ttgcgtggcg
    11221 ataaagttat cgtctgcgga cacggtcgct cttacggtaa tgccgaatta ttggtcagcc
    11281 acttacttca ccgttatgaa ctggcaagac cgagttttgc tgccgtacaa ctgcaattaa
    11341 gcggtgtatt ggcaggagtt gtggcacaag ataacgagtt agaggctgtt tataaaaaac
    11401 agttgcaggc ggttgcaaaa gagggtgatc tcttcattgt tttttcgcct gtgggtaatg
    11461 aagaatgtat attgcaagct attcatacgg cgaaaaatca acatttagat ttagatatta
    11521 ttgctttaac aggcagtaat aacgaccaca cactcggctt attagatgaa agtgatattg
    11581 aaatttcagc cccttcaacc aatcaactga gggtgattga aagccatcat ttttatgtga
    11641 atttattatg tgaacttatc gaccatttac tattttcgta aggagagatt atgaacaaat
    11701 tagcaaataa actattaaag ggcagcctat tagtattagg ttttatctct ttacaaggtt
    11761 gtatcaccac ggcggtggtg acttctgcgg cggttgcaac taaagtggcg acagacccac
    11821 gcaccaccgg cacgcaagtt gatgatgaaa ttttagaaga aaaagtcgct tacaacatta
    11881 ataaagacga gcaaatcaaa caagaagccc gcattaacgt ggtggcttac aacggcaaag
    11941 tgttattaat cgggcaagca ccaagtatgg acgtagtgga aaatgcgaaa aacctcgctg
    12001 ctggggcgga gggcgtgacg gaaatttaca acgaaatccg ccaaggcgaa aaaatcggct
    12061 ttggacagat tacacaagac agctggatta ccacccaagt gaaatccaaa ctgttagtaa
    12121 atagcgaggt aaaagccacc gaagtgaaag tcgtcaccga aaacggcgaa gtgtttttaa
    12181 tgggcaaagt cagccaaaac caagctgatg ccgccgccga agccgctcgc aatgtaggtg
    12241 gagtaaccaa agtggtgaaa gtatttagtt atgcgcagta attgataagc tcaattagtt
    12301 tatatttttg taactcacaa gcggtctaaa tttgtcattt ttttgcaaat ttagaccgct
    12361 tgtttgatat aagaagatga ccttagatag gaagataaaa tctatgagtg ggtgatcgta
    12421 atgatgattt ttaattcatt tgactcgaaa aatatgcaca ccctatcaac ataaggattc
    12481 ccttgactct tcattgcttt gagcgtagat ttaaacttaa actatgtctt gaacatagtg
    12541 gaatcaagac acaaatcaaa ggagcagaat atgctattca aagaacaagg atatgatgag
    12601 tttcttgcag agcaaattaa agctggtcaa gaagcaatag ctcgaggaga aacctttacc
    12661 aaagaacaaa tcaataacga attaaatcat ttatttgcgg atatgcagaa acgtcagcaa
    12721 ttacgagaaa atgaaaattt gtttgaggtt aattatgcct aaatcttggg agctgtcact
    12781 taccgcaagg tctaatgtca ttgagatttt acagtcggta gaagattata cagggcattg
    12841 gttgagcgca gtttcacttt gggaacaatt acaaaataaa ctcgatctca ttgcatttat
    12901 gcctacaata gggcgacgta gagaagatgg cacattagaa acattctgcc gcaattatcg
    12961 tattgtctat gagatacacc tagaaaaagt atatattatt actataattc attctcgccg
    13021 tttgtatcca agacctagct agagattaat acctatctaa cagaatctcc ttaaatcaat
    13081 gatgaagtat ggaagtttat aggtcactca atactaaata tcaagcggtc atttttgccg
    13141 attcttttgc aaaaagtatg gcgaaaatga gcgcttgttt ctgttgattt atccacaaaa
    13201 atgataaatc aatttagtca ataactcttt tgtcggttcg atatatttca tttccaaaaa
    13261 ctcatcgggc tggtgggctt gttcaatgga gccggggcct agtaccagcg ttgggcagag
    13321 ttgttgaatg aatggggctt cggtgcagta attgacggca tcgcattttt cgcccagtag
    13381 cttttcaacc acttgcacga tttgtgccga gtgttcgcat tcgtagcccg gaattccatc
    13441 gtgtaaatgg cggatttcaa ttaaatcgcc atattgttcc agcatcggtt ttaaatgctc
    13501 gtttaccatt gcatacaaat cttgcaccgc catattcggt agtggtcgca tatcaaattg
    13561 caattcgcaa caggcacaaa tgcggttaat ggcatcgccg ccgtgaatat tgccgaagtt
    13621 cattgtcggg tgggtgactt ggaacagcgg attgtggtat ttctctcgca gttcatcacg
    13681 cattttcatt aaataaccga tagattggtg cattaattca atcgcattaa tgcctttggc
    13741 ggggtcgctg gagtgtccgc ttctgccggt aatgcgaacc gattcgccaa tatgcccttt
    13801 gtgggctcga atcggtttga gcgaggtcgg ctcgccaata atcgcacaat cggggcgaat
    13861 gtggctgtgc tgagcaaagg ttcttgcccc cagcattgtg gtttcttcat cagcggtggc
    13921 aagaatgcga atcggctttt tgatttgggt taggtcgagt tggctcacaa cctccaccac
    13981 aaaggcgaaa aagcctttca tatctgccgt gcctaagccg tagagtttgc ctgctttttc
    14041 ggttaattgg aatggattga agcgccattt tccttcatca aacggcacgg tgtcggtatg
    14101 ccctgccaat aataagccgc cctcaccctc gccataggtc gcaagtaaat tgtatttatt
    14161 acggctgcct tctaccgcta aaatctcggt tttaaagccg aaatctgcca gccaagtggc
    14221 gagcaattca atcaaacggc ggttcgataa atcttcttcg gcaacaaggc tggaaatggt
    14281 cggtagctca atcagttgag catagcgttg aataaaggga atctgtttca ttggttatcc
    14341 ttgttgtctg aatgagggca atttcaacag gcgtttaatg atggcaaaac cggctaaaat
    14401 ttcccacagc ataatggtat aaatacctgc tcgttcaatt aacgggctaa acagggttgg
    14461 taggaaaatc gtgattaaaa tacagattgc cccgataacg cccgcaccaa tgctaaagcg
    14521 tttaaaaaat tgcattgaag ggtggtagag atcgaagcct gcgatgatca gcgttaaatt
    14581 gccgattaaa aacgtaatgc ttgcccctaa attgtaaatg ccgaattcgc cacgactgct
    14641 tggctgaata ccggcaacta gtgagcagcc aatcgcaaag catagcgaaa gcaataagcc
    14701 gatgacccgc aatttgttgt gagcaatgtg ggtgatgccg attgcataaa taaagaaaaa
    14761 aacgactgct tgtagcacaa acattgaacg cattaccacc gaaagtggtg ataattcgct
    14821 gattttttca tctatcattg tgccgactgg aatcatcaat tcaagggtgc tatggtggaa
    14881 gtaagtggtg agcgatcttt cgctaaataa aatcgtgatg tgttccgcca ccaaataaaa
    14941 tagcccgcta aaacttgaaa ccatagcaat aataaaaatc aaaaaggcac agcttttacg
    15001 aaaacaaggg tgcattagaa aagggtagaa tttcacccca aatgaaccgc tggtaaagta
    15061 gttttcgatg gctttggaaa gcgtggttaa ttgttgaatt aaatgtttaa tccattctgt
    15121 tttcatataa acctatcatt tttaacgggt tgagtgagtt atcgtattcg tacgtacatc
    15181 aaacacgttc atattgccgt tgagggcggc ttgcacgcct aaatcggcat cttcaaacac
    15241 caaacagcgg tgtggggcaa tgccaagttt ttccgcacat tttaaaaagg tttcaggggc
    15301 tggcttatgg ttgcttacat catcagaatc tacaataacc gaaacatatt gacgtaagtt
    15361 aaatttttgg tctaataatt ccaccattgc acggtgtgag cctgtgccga ttgccattgg
    15421 ttttttgcca acgttagctt taataatctc aaaggcaggc aacagagtgg cattggctaa
    15481 caccatttca atcccaaatt cccgttttag ttgtaccact tgctcaaaat aatgctcggg
    15541 gatattggag cgttgcatta tttctcgggc aatcacaaaa gtggttgagc cactcagttc
    15601 gtacattggc tttggattga ttgggtagcc taacacttcg cccacctttt cccacgcctt
    15661 ggcgtggctt ggcatcgtgt caattaatgt gccgtccata tcaaaaatca aggcgtcata
    15721 ttggtcgata atggtttgat ctaacattgc tttccttaaa tttttttcta aattctggat
    15781 ttaattccgc caaattcggc aatcattttt tcggtgaaaa gtttcagctc ttcggtcatt
    15841 aataagaaat cggcatcaaa gcgttgagcc acatcttctt tgagaatatc gtcatttttc
    15901 tctcgcactt catcggcaaa cttcaggcgt gaaagcgtgg cgtcttcatt taacacgcaa
    15961 ttgaaatgcc cttcccattc aatcgcaagt tttgtgataa atttgcccgc ttgcaagtgc
    16021 cgggcgattt cttccgtctc taaatcttgg cgtttacagc gaataatgct gtcggtatcg
    16081 aaagatttca gttctgcctc ttccaacaaa ttcaaccaac ttggcgtatg ccctttggcg
    16141 atccaattcg tcattacctc tgccggcggt agggtaaagg aaatcggcac aaccggcaac
    16201 gagccaagtg tttttcgcag taacgccagc gtatcttccg cccgtttgct cgaggctgca
    16261 tccacataaa ccaactgatt atctaaatcc aaccaaagag cggtgaattg atgtttgctg
    16321 aatgctcgag gcaataacgc agaaacgacc tgatctttca cggcttgttt ttcggttttt
    16381 ttcagcttac gagcctcttt ttcttccagt tctgcaatgc gttgctcggt ttcggctttc
    16441 accacattgg caggtaataa tttatcttct ttgtgtgaaa tcagcaaaaa ttggttcgct
    16501 tgtgagaaat gcagtaaatc cgagccggta agtggcgtag cccagccgaa tttgctcata
    16561 tcgtgctggc tgcaaggggt aaagcgggtt tcttgctgta actcgttaag gctattgctt
    16621 tccaacgcca gctcgccggt taatttatag atcatcacat ttttgaacca aaccattttt
    16681 gcatatcctt tatcgggtgt agaatagtgt tattttaaca gacctcaacc caacacagta
    16741 gagaatttgc gaatgaacga gaaaaaactt gcctttatcg gcaccggaaa tatggcgtat
    16801 gcgattattc aaggcttatt aaaaagcggt tattctgccg aacaaatcat tgcgtgcaat
    16861 aaaagtaatt tggctcgccg agaggagtta caagcggtcg gaattgcgac aaattttgca
    16921 aatcgtgagg cggtagagca ggctgacgtg atcgtgctgg cggtaaaacc acagatgatg
    16981 gcacaagtgt gtgccgagtt tgccgatgtt gatttttcca acaaatgggt gatttcagta
    17041 gcagcaggta tttctgtgca acgcttggaa acgctgttgc cgagtgcgaa aaatatcatt
    17101 cgcacgatgc caaacacccc gtctttaatc agcgaaggaa tgaccggatt atttgcaaaa
    17161 aaatcggtaa atccgaccgc ttgccaattt gccgaacagt tgatgtcagc cgttggtaaa
    17221 tgttactggg tggaaaccga ggagcaaatc aaccacatta ttgcgataac cggctcaagc
    17281 ccggcgtatt tcttccgttt tatggaggca atgcagcaaa gtgcggtgca aatgggcttt
    17341 tccgagcagg acgcaagaac gcttgtacaa tctgtcgcat tgggggcggc gaaattggtg
    17401 gaagcgaacc cgactacgcc actttcgacc ttgcgggaaa atgtgacctc aaagggaggc
    17461 acaacggcga aagcccttga ggtgtttgag cagcacgatc ttgctaaaac cgttgatgat
    17521 gcaatgtggg cggcaattca tcgagccaga gaaatggagc aatcgttatg atgaaagttt
    17581 ccccgttcca atgggcggca tttaattact ttggcttttt ttgtgcctat ggcgtgttgt
    17641 tgccgttttt gccagtgtgg cttaaacatc acggctattc gactgaaatg atcggcttat
    17701 ttgccgccgt tggctatttg ttccgctttg ccggcagtat gcttgcctca caacgggtaa
    17761 aaaccgtgag ccaactcatt cccaccgccc gcagtttaac ttggctgaat attgcggctg
    17821 cggcggcgtt gctgttttca ggggatttca tttggctact ttttccggtg ttaatgttgt
    17881 ttcaaatgtt caattcgggg gcaatgccga tagccgatag cattgcctca atttggcaac
    17941 atcagatcgg gctggattac ggcagagcaa ggttattcgg ctcaatggcg tttgtggtag
    18001 gctcactttc tgccggctat cttatcggct tgcttggtga aaattcggtg gtgtggatta
    18061 tcatcggttt cttggttttt ttaggaatag ggcagcttgc tacgcccaaa gtcgggtttg
    18121 aagaacaagg taataaagcc aatacttcaa gcgtaactta tcgccaatta ttgaaagagc
    18181 cggaaacctt aaaaatgttg atcgcggtgt cgttaatttc agcctcgcac gccgcttatt
    18241 acacttacag caccattcat tggtcaaatg ccagtatttc aaccgcaatg actagcctgt
    18301 tttggggctt ggcggtggtg gcggaaattt tgttcttttt ggtctctaaa cgcttgttta
    18361 aatcgtggaa aatcagccat ttaatgattt tagctgccgt ttttgcagtg attcgttggg
    18421 caataatggg tagtactaca gagatcgtgc tgattattgt aatgcaaatg ctacattcta
    18481 ttaccttcgg ggcggctcat attgcgatga ttcgctatat ttcgatgcaa tcggcagagc
    18541 gtgtgacgaa attacaaggt ctctattttg gcttggcaag ctgtgctttt atggcagtat
    18601 ttacctttat tgccggaatg gtctatcaac attccccaag cctgacattt tggttgatgg
    18661 caatttttac cctacctgcc atttttattg tgccgaaaag gtttgaagta cagattaatt
    18721 gatagcaaaa atgccgacaa gttgtcggca tttttatcga aattcattga atttgctgaa
    18781 attagattgt tttcacgttt acggctgaag ctccacgctc tgaatcttgg atttcaaatt
    18841 gtactttagc accgtcttct aatgtgcggt agccgccgtt tgcttcgata gcagagaagt
    18901 gtacgaatac atctttgcca ccttgatcag gggtgataaa accaaaacct ttggtggcgt
    18961 tgaaccattt tactgtgccg gtaattgctg acataaaatt ttccttatat aaatacaaaa
    19021 agtgataaaa gatagctaaa cgggatatta cagacgtatc tatcaatcac ttgccttgag
    19081 gaaaataact aacaagattc aactttaatt aacgcacgaa cagcttgagc cattacacca
    19141 cttattcatt ttttaagcaa atcattttta tacttttatg aacattcaaa tgaaaaaaga
    19201 gtctatctct tttgtaaacg taatgtggaa tttatatgga cgaagcctta taaatcaaat
    19261 atagtatcca gttagatttt cacttatcta attattagat ttttattaaa taggacttat
    19321 tatgtcagag caaattgagc aaaaagtaga acaaactcag aataaaacca atccaagtac
    19381 caaggaagtg attgcttatt tagcggagaa atttccgctt tgtttcacgc ttgaaggtga
    19441 agtaaaacca ttgaaagttg ggttgtttca ggaattagct gaagcattaa aagatgatga
    19501 gaaaatcagt aaaacgttat tgcgccaagt attgcggaat tacactaatt cttggcgtta
    19561 cttggctgcc agccaagcta atgttgctcg tgtcggctta cagggtgaag aagttggcgt
    19621 ggtaacagaa gacgaagcta ctcacgccgc agaagctttg gctgctgcga aagcggtggt
    19681 tgcagaacgt aaagcacaag agcgtaaagc acaacgtaaa gagtacttca aacagaaagc
    19741 acgtgaagaa aatgcgaaaa agcgtgcaga atttaaggcg aaaaaagcaa tagataattt
    19801 acctaaagct tcagaagaaa aattagctgc attagcagat aaattcggtc gtaaatagtt
    19861 ttcaagtcgc tttgtgctta caagcggtcg gattttagta aaattttgca aaaaaatgac
    19921 cgcttgatta tttggaaaag aagatgaaat taacaagatt aaataaaatt tttgccctag
    19981 ccctaggttt aatgatagga aacgcttttg ccgttcagcc ggacattaaa gaaagtgcga
    20041 ttgtgatgcc aaaacctaat gagcagcata gcttatcaac caagcgtgta acagcccgat
    20101 taactcaatc gcattatcat aaatttcaac tgaatgatga gtttgcaggg aagattttta
    20161 accgctatgt cgattggctt gatccttctc ataatacttt tcttcaagcc gatattgatg
    20221 aaatgcgtag taaatatgct acaacattag atgatgattt atatgctggt aaattagatg
    20281 cagcatttgc aatgtatgag ttaatgtcta aacgtcgtta tgagcgttat agctatgcct
    20341 tatctttact agataaagag cctgacttaa aagggaatga tgaaattgag attgaccgtg
    20401 agaaggccgc atttccaaaa agtgtagaag aggcaaatac actttgggag cagcgagtta
    20461 aaaacgatat tatcaattta tatcttaaag ataaaaaatg gcctgaaatt aagaaaacac
    20521 tcactaaacg ttataacttt gcgattaagc gtttaactca agttaaggct gatgatattt
    20581 tacaaactta cttaaattca ttctctcgtg agatcgatcc ccacactagc tatttgtctc
    20641 ctcgtgcggc aaaagcgttc caagagagca tgaatctgtc gctagaagga attggtgcaa
    20701 cgctaaccca agaagatgat gtaaccagca ttagagcatt agtgccagga gcccctgccg
    20761 ctaaaagtaa gaagctggta gtcggcgata aaattgtcgg tgtaggtcaa ggtgagagag
    20821 gtgagattga agatgttatc ggttggcgtt tggataatgt agtcgataaa atcaaaggta
    20881 aaaaaggcac taaagttcgt ttagaaattg agcctgaaaa aggtggaaaa actaaaatta
    20941 ttacccttgt gcgtgataaa gttcgtattg aggatagtgc tgctaaatta acggtagaaa
    21001 aagtagatgg aaaaaatgta ggggtaatta agatccctac tttttatatc ggtttgactt
    21061 cagatgtacg taaattactt actcaaatag agaaaaaaaa tgttgaagga ttgatcattg
    21121 atttacgtga aaacggtggt ggttcgttaa ctgaagtgat tgaattaact ggtttattta
    21181 ttaaagatgg gcctgtagtg caagtacaag acgcattcaa tcgtatcaaa gtacacgaag
    21241 atccagaatc aaaatcagtt tatgatggaa aagtgatggt gatgattaat cgccatagtg
    21301 cttcagcctc tgaaatcttc gctgcggcaa tgcaagatta caaccgtgca attattgtag
    21361 ggcaacaaac ctttggtaag ggaactgttc aacagagccg ttcattgaat tttgtatatg
    21421 atttggatca agagcctctt ggttttatcc aatatacgat tcaaaaattc taccgtatca
    21481 atggtggaag tacccagcta aaaggggttg aggcggatat taaattcccg gaaatcatta
    21541 atgctgcaaa aacaggtgaa agttttgaag ataatgcgct tccttgggat aaaattccag
    21601 cagctaatta taaagaggct gggaatgctc gtaacgcggt tgctgcatta acagcgaaac
    21661 atcaagagcg tattgctaaa aacccagagt ttatagtatt aaacgagaat attgcgattc
    21721 gaaaagaacg tgatgagcgt aagtttttat cgttaaattt agaagaacgc ctgaaagaaa
    21781 ataaagcaga tgaaagcaag cgcttaaaag atattaatgc tcgttttgcc cgtgaaggca
    21841 aaaaagcatt aaaagatatt gatgatttac caaaagacta tgaagcaccg gactttttct
    21901 taaaagaagc tgaacagatg atgcttgatt ggtcagaatt tgataaaaaa tcataaatgt
    21961 gtttat
//
LOCUS       DANMGB010000022        21720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.022, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000022 DANMGB010000000
VERSION     DANMGB010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.022"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(23..646)
                     /locus_tag="PXG19_000631"
     CDS             complement(23..646)
                     /locus_tag="PXG19_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6065956.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
     gene            complement(692..1264)
                     /gene="rpoE"
                     /locus_tag="PXG19_000632"
     CDS             complement(692..1264)
                     /gene="rpoE"
                     /locus_tag="PXG19_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL6065957.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            complement(1486..3030)
                     /gene="leuA"
                     /locus_tag="PXG19_000633"
     CDS             complement(1486..3030)
                     /gene="leuA"
                     /locus_tag="PXG19_000633"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL6065958.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
     gene            3524..4339
                     /locus_tag="PXG19_000634"
     CDS             3524..4339
                     /locus_tag="PXG19_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6065959.1"
                     /translation="MTLPFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFA
                     TGRNHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDD
                     QNVCLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEA
                     LVPIEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGD
                     GMNDVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
     gene            4405..5568
                     /locus_tag="PXG19_000635"
     CDS             4405..5568
                     /locus_tag="PXG19_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6065960.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(5681..6624)
                     /locus_tag="PXG19_000636"
                     /pseudo
     CDS             complement(5681..6624)
                     /locus_tag="PXG19_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            6772..7593
                     /locus_tag="PXG19_000637"
     CDS             6772..7593
                     /locus_tag="PXG19_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL6065961.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            7732..9012
                     /gene="pepB"
                     /locus_tag="PXG19_000638"
     CDS             7732..9012
                     /gene="pepB"
                     /locus_tag="PXG19_000638"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL6065962.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            9063..9545
                     /gene="greB"
                     /locus_tag="PXG19_000639"
     CDS             9063..9545
                     /gene="greB"
                     /locus_tag="PXG19_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL6065963.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(9587..13111)
                     /gene="recB"
                     /locus_tag="PXG19_000640"
     CDS             complement(9587..13111)
                     /gene="recB"
                     /locus_tag="PXG19_000640"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL6065964.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(13170..14561)
                     /locus_tag="PXG19_000641"
     CDS             complement(13170..14561)
                     /locus_tag="PXG19_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL6065965.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            complement(14697..15791)
                     /locus_tag="PXG19_000642"
     CDS             complement(14697..15791)
                     /locus_tag="PXG19_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL6065966.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            16013..16609
                     /gene="grpE"
                     /locus_tag="PXG19_000643"
     CDS             16013..16609
                     /gene="grpE"
                     /locus_tag="PXG19_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL6065967.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            16707..16976
                     /locus_tag="PXG19_000644"
     CDS             16707..16976
                     /locus_tag="PXG19_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6065968.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            17039..17491
                     /locus_tag="PXG19_000645"
     CDS             17039..17491
                     /locus_tag="PXG19_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL6065969.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            17595..21581
                     /gene="hrpA"
                     /locus_tag="PXG19_000646"
     CDS             17595..21581
                     /gene="hrpA"
                     /locus_tag="PXG19_000646"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL6065970.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
BASE COUNT         6503 a         4696 c         4411 g         6110 t
ORIGIN      
        1 tttcagtaac ttattttacc tattattttt gtatatttgg ctctgattct gtattggaag
       61 aagtttgtgc tttttgcttt tcttcctcag ataaggttaa atttttaacg ttattagtac
      121 ggcgttgtaa ctcatggttt tctaataacg cattaatctt acgctgttga agctctaact
      181 gttcttctgt tggttgatct tgaactggcg cattataact taccgcttca actgaattgc
      241 taaatggcaa tgtttgtaat actggttgtt gcgtttgagc tatttcatca ctcgcattca
      301 ttgaattaac ccctaatacc gcaactaagc acactgaagc tgcaataccg gcttgcataa
      361 ttggagttcc ccaacgcttg agcttgagca ataagccttt aggtttctct acatttgctt
      421 gagattcaat ttcttcattt tccagtaatg cttccatttt agcagagaaa tctctcccta
      481 aaatgatctc atcaccttgc atcacactac gaatagtgtg ataacttgcc catttttgct
      541 gtaattcagg gctgttagtt aatgtttcta caaatgctgt atcaacattt tgcccatcca
      601 tataagctga aaggcgttca ttttgttgag tgatgcgttc ttgcataatt gactccaatg
      661 atttaaatct cttctaaaat aatctttcta tctattgcat aagtggcttg attttagcat
      721 caatcgcttc ccttgctcgg aaaatacggg aacgtacagt accaaccgga cattccatca
      781 cttctgcgat ttcttcgtaa cttagccctt ccaattctct taaacgaatg gcggttttaa
      841 gctcatcagg taaattttca atcgtatcaa acacgacttt ctttaattcc tcggataata
      901 tcaaattctc tggcgtatca ctttcacgaa gttgcgcgcc tacatcataa ctttcagcgt
      961 cttcggcaag aatatcttct tttggcggtc ttctgcctaa agaggttaaa tgatttttcg
     1021 cagtattcac tgcaatgcga taaagccacg tataaaaagc actttcgcca cggaaagact
     1081 ctaaagaacg ataggcttta ataaaagatt cttgcacaat gtccggaata tcatctcttg
     1141 caacataacg agtcagcaaa ccggctactc tattttgata acgtacaaca agtaaattaa
     1201 atgctttttt atcacctttt tgtgcttttt cgactaattc ttggtcggtg atctgttcgc
     1261 tcaactgcgg actctcctaa atatcaatat gtcattttcc attgcacact ttgttagtgt
     1321 gtgctttatg acaaaagttc aaaaaatttg aaaaattgtg taatttttta cattcctaga
     1381 taaaacctac ttaataaact aagcaagcgg tcggatttta gcgaaatttt gcaaaaattt
     1441 caaaaaatcc gaccgcttgt ctatgttatg ctttcgctct ataagttatt tcttcgcttt
     1501 taaatctgcc actttttgtg aacggtaaat cgcattaatg gcgtgaatta aagctcgggc
     1561 tgaagattcc acaatatcgg ttgccaaacc cacaccgtgg aattttcgac cttcatattc
     1621 cactacaata tccacttgcc ctaatgcttc tgctccttcg cctttcgcag tcagattata
     1681 gtgcgacatt tttagctcca ttcccacaat gttcataatg gcattgtaag ttgcctcaac
     1741 tggaccattt cccccttgag atgtagcact ttgacgaacg ccgtctaatt ccacctgtac
     1801 aaaagccgaa gccggtaaac cgctgattag ttgggtggta attacatcta attttaagcg
     1861 gtcttcatcg ccttgctgca tatcaatgaa ggcaagagct tctaagtcat aatcaaacac
     1921 ttgccctttt ttatcagcaa gttgcaagaa ggcctcataa agtttatcta aatcgtaatc
     1981 cgtttccgta taacccatat cagccatatg ccctttcacc gctgctctac ctgaacgggc
     2041 agttaaattc agcttctctt ttttcaagcc gatggtttcc ggcgacataa tttcataagt
     2101 atttttattt ttcagcatac cgtcttggtg aatacctgaa gagtgagcaa aggcattgct
     2161 accgacaatc gctttgttcg gctgaatcgg catattgcaa agctggctga ccatttggct
     2221 gacacggtga atttcttggg tattaatgcg ggtatcaacc cccataaatt cttggcgggt
     2281 tttaattgcc attaccactt cttcaagagc ggtgttaccg gcacgttcgc caataccgtt
     2341 gatagtacac tcaatctgtc tcgctccgtt ttgcaccgct gtcaatgagt tggcggtagc
     2401 catacctaaa tcgttatggc agtgaacaga gacaatcgct ttatcgatat tcggaacacg
     2461 gttcatcact tggtggataa tattgccgta ttcattcggt aaacagaaac cgactgtatc
     2521 cggaatattc actgtggttg caccggcatt aatggcagct tctacaatgc ggcagatgtt
     2581 atcaattcca gtacgcccag catcttcaca ggaaaactca acatcatcag tataatttct
     2641 ggcgcgtttt accgctgcaa ccgccatttc gactacatca tcaaatgaac gttttaattt
     2701 agcctcaacg tgtaatgccg agctggcaat aaaggtatgg atacggaatg cttctgctac
     2761 ttttaaggct tcataagctg catcaatgtc ttttgcaacc gctcgggaaa gcgccgccac
     2821 ccggctgttt ttgatatgac gagcgatggt ttgtactgat tcaaaatcgc ccgctgaaga
     2881 aactggaaaa ccgacttcca tcacatcaac ccctaaacgt tctaaagcaa gggcaatttg
     2941 caatttttct tttacggtta aacttgcttt taatgattgc tcaccatcac gtaaagtcgt
     3001 atcaaaaata ataatgttat tgttgctcat agaagcctct ttttaggtgt ttttatttga
     3061 taaaaaaagc ccgcatttta aggtgcgggc aagaatgtgg atagtccatt tactttttcc
     3121 aatcaatctt tatcctcgca caaaatacga taacagagat aatcggagta aggtaaattt
     3181 ttccatgttg tgttgtatgt ttatgtttgc attgttattc agtagttgag gtgtatatta
     3241 tccttatcca aatcaatgtc aatagcattt ttctcttcac gcaaccgttt accagcccat
     3301 taattcaagt cataccagat tattatattg aataaatcca acttattagt aaaaaaaact
     3361 atttcattta agcaaaatga tacaaagaat taattttaat aataaaacag atatttagaa
     3421 tttaatgata tttttgtaaa aaaatttaaa aaaatttgtt ttctttgaag tttcagatca
     3481 aatttggtag cctttgatat tattttattg ttaggaatag attatgactc tcccatttcg
     3541 tgcaattatt tccgatcttg atggcacact attaaatgcc aatcataaaa ttggtgattt
     3601 cactattgat acattagaac aactatcaaa aaaaggtgtt gatatttttt tcgccaccgg
     3661 tcgcaatcat ccagatgtgt ctcagattat tgggaaagta aacgttaaaa atgcaatgtt
     3721 agtcacttca aacggggcaa gagccaacaa tttagagggt aaaaaaattc tcaaccatta
     3781 tttaccggaa gatcttgcct ttgaattaat gaacattgaa tttgacgacc aaaatgtgtg
     3841 cttaaacagc tatcaaggcg atgaatggtt tatcaataaa gagattgcag agttaaaaaa
     3901 attccatcaa gattcaggat ttagctatca agtagtaaat tttgctcatc atcacggtcg
     3961 aaataccgag aaagtgtttt ttatcggcaa aactgctgaa gctttagtac cgattgaaca
     4021 ttatattcgg gatacctatg gcgaccgtgt gcaaatgacc tactctgccc tactttgcct
     4081 tgaagtgatg gcaaaaggag tgtgtaaagc caatgctctc gccgaattgg tcaaattacg
     4141 gggctacacc ttagccgatt gtatcgcttt tggtgacggt atgaatgatg tggaaatgct
     4201 aagtttagcc ggcaaaggtt gtttaatggg taatgccgat ccacgtttaa aagccgtatt
     4261 accgaataat gaagtgattg gctttaacaa agatgaagcg gtggcaagct atcttcgagc
     4321 cacatttggc attgtttagt tgagagcaac ttttttgcaa atttttgtct aaatttgacc
     4381 gcttgtatat catcaaggaa cagtatgaaa cgtaaaacat tagccactct tgtgctaatt
     4441 gccgctctcg gaataggcgg ctatttttat tatcagcaac aaaccaataa accgcaaatc
     4501 cattacatta cccaagctgt cacacgggca gaaattaaca aaaatgtgct ggcaaccggt
     4561 tcggttcgag cgaataaacg caccgaagtg ggggctcaag tttcgggcaa aatccaaaaa
     4621 ctctatgtcg agctcgggca atcggtgaag caaggagatt taattgcaga tattgattcc
     4681 agcaaccaga gcaacacctt aagcaccgct caagcccggc tttcttctta taaagcacag
     4741 ctcacctctg cacaggttgc acttgaagta gctcaatcga actacaaccg cttaaataaa
     4801 ctctatcggg caaatagtgc ctctttaaac gatcttgaaa cggctaaaaa taccttagct
     4861 tcagccaaag ccacggtgga taacattaaa gcacaattaa aatcggctga aatttcggta
     4921 aacgatgcta aaaccaactt aacttatacg caaattatct cgccaatgga cggcgtgatt
     4981 gtgtctgtac cggtttctgt cgggcaaacg gtcaattcca atcaaacttc gccaactatt
     5041 gtacaggtag cagatttatc taagatgctg attaaacttg aaatttcgga gggcgatatt
     5101 gcacaggtta aagtcgggca aaaagttaag ttttccaccc ttgctgagcc aaatcgagaa
     5161 tatagtgcta ccattgattc agttgatccg gcactcacca cgctgaccga taataactac
     5221 accgaacaat cgggtaatac cgaagcggtt tattactacg ctaatgtttc cgttgataat
     5281 gccgataaca gtttacgcat cggaatgact actcaagccc aaattactat tgataaacgg
     5341 gaacaggttt tagttgtacc caccagcgta atcaaaaaac gtggtaaaga gaattatgtg
     5401 ttggtgctgg aaaatgagca gtcggttgaa agaaaaatcc aaattggcat ttcggatacg
     5461 caaaataccg aagtattagc aggcttaaat gagggtgatc aagtgattgt tacccaaaga
     5521 gcggatgatg aaaaaatcag cactgcacgt ggaccaagaa tgttctaaat tctaaacaac
     5581 aagcggttaa attttctgaa cattttgcaa aaaattagaa aaatttaacc gtttgtctat
     5641 tctttattaa aacattaaaa cgtctgtatt aaaacgaatt ttatttttcg ttatcgtttt
     5701 tcattttagc gaaaatcatc gccaaaatcg ggcctgaaat attgtgccag aagctaaata
     5761 ccgcacttgg caccgcaatg atagggttgg ctttaaagtg taatgcggca agtgctgccc
     5821 ccaatcctga gttttgcatc cccacttcaa tcgccaccgc tttgctgtct gcaatcggta
     5881 attttaataa acggctcgcc aaataaccga ttaaataacc taaaccgttg tgtaatgcta
     5941 ctaccgcaaa aattaataaa ccggattcaa taatacgatc tcggctaact gacaccaccg
     6001 ccgtgacaat taatacgatt gcaatcactg aaattaatgg cattgtttgg ctaaattgct
     6061 ctactttttg tttgaaaata gtacgaatca ccacgcccac aaaaattggc aatagcacca
     6121 tttgcaacac cgaaataaac attgccgttg cattaatttc taaccattgg ctggcaaata
     6181 aatagaaaat tgccggcgtg agcactgggg caagtaaagt tgaaatagtg gtacaagcta
     6241 ccgataacgc tgtgttgcca cgagccaaat aggtcatcac gtttgaagaa gtaccgcccg
     6301 ggcaacaacc aactaaaatc acaccaatgg ctaaatctgc gggtaagtta aatgcttttg
     6361 ccaatccata agctacactc ggcataccac gaattgagcg atcacgccga taatcactga
     6421 tttcggattt ttcgttacct cggcaaaatc tttgaaagtt aaggttaacc ccattcccaa
     6481 catcacaatc cctaacagat aaggaatcca aggcaggaat tgcttaaagg tttccggaaa
     6541 ttgtgctgcg ataaaagcaa aaaacaccac ccaaatggcg aaggttttgc tgataaattg
     6601 tgtaaatttt aataatgttt gcatatagcc tctgtgtaat tgttataaaa aggttactag
     6661 gctaccttag tttgctttaa aagtgaatag gagcaataaa ctattagcca taagcaactc
     6721 tttttaggta taatcgctct gtttatcaac aataaaacta aggatatacg tatgaaaaac
     6781 atcaaacttt ctgctatgag cctcacagct ttatttgtat taactgcttg ttcgcacacg
     6841 cataaaaaca gcgatgagca tcatcaaatg gtgttgcaag agcaagctac attagggata
     6901 aactggatgc aacaatccgg cgaataccaa gctcttgccc atcaagcatt caatgcagcg
     6961 aaagtggcat tcgaccaagc caaagtgaaa aaaggcaaga aaaaagccgt ggtagtagat
     7021 ttagatgaaa ctatggtgga caacagcctt tatgccggct ggcaggttaa aaaccacaag
     7081 ccgtttgatg gtgaaagctg gactcgttgg gtaaatgccc gccaaaccgg agcgattgcc
     7141 ggtgcagtgg aatttaacaa ctacgttaat agccacaaag gaactatgtt ctatgtttca
     7201 aaccgtaaag acagcagtga aaaagccggt actattgatg atatgaacaa attaggcttt
     7261 agtggtgtga gcgaacaaac actcttgttg aaaaaagaca aatcgaacaa aacccctcgc
     7321 tttgaagaaa tcgaaaaaca aggctatgaa atcgtgctct atattggcga caacttaaac
     7381 gatttcggcg atgcgactta ccgtaaatca aacgcggaac gccgtgcatt cgtagccgaa
     7441 aacagccaac aattcggtaa aaaattcatt atgttaccga acccgaacta tggcgactgg
     7501 gaaggcggtt tagataaaga ttactacaaa ggcaatgctg aaagccgtgt taaaatccgc
     7561 cacaatgcaa ttaaagcttg ggacggcaaa taatccgtcc ttaatcaggt tgtaaaaaca
     7621 cgaaacaatg accgcttgtc aaggctatgc tctgcaagcg gtcatttttg tataaaactt
     7681 tgcaaaagtt tgttaggata aagcaaaatc cattttctaa ggaaaccgat aatgacagca
     7741 atgaaaattt cactttctac tcaaaacgcc cctgaaattt ggggtaaaaa tgctattctt
     7801 tccgcaaatg atgcggggtt taccgtacat aatccgaaca acgatttagc cactattcaa
     7861 aaagccgccc gcaaaattaa aaatcaaggt atttcaaccg tggagctgac cggcgatagt
     7921 tgggatttag aatcctgctg ggcgtttcat caaggatttc attcggtaaa aaatcaaggc
     7981 tcggtacaat acccagactt agacgaacag caagccgaat ttgataaccg tgtaaaatgt
     8041 gccactttcg tgcgtgaatt aattaataag ccatcagata aattaacccc tgaaaaatta
     8101 gccgaacaag cggtcgagtt tatccaaaaa atggcaaaac cgaatacggt ttcttaccag
     8161 atcattcgtg gcgaagcatt acaagaacaa ggctatcacg gcatttggac agttggaaaa
     8221 ggctctgcca atccgcctgc attcttagta ttagacttca acccaaccaa cgatgaaaac
     8281 gcacaggtac tggcttgctt ggtcggcaaa ggcattacct ttgacaccgg cggttatagt
     8341 ctaaaaccaa gcgatagtat gagcacaatg cgaaccgata tgggcggagc ggcactttta
     8401 accggctcac ttgcttttgc cattgctcga ggcttgaata aacgagtgaa actctacctc
     8461 tgctgtgcgg aaaatatggt cagccacaat gcgttcaaat taggcgatat tatcacttac
     8521 cgcaatggcg taactgttga agttttaaac accgatgctg aagggcgttt agtgcttgcc
     8581 gatggtttaa ttgatgcgtg caagcaaaat ccacaattta ttattgatgc tgcaaccctc
     8641 acaggagcag caaaagtcgc agtcggcaat gactaccact cggtgctttc aatggacgac
     8701 aacctaaccg aagcactatt taagtctgcc aaaacggaaa atgaaccgtt ctggcgttta
     8761 ccgtttgaag aatttcaccg tgggcaaatt gcttcttcct ttgcagacat cgccaatatc
     8821 ggctctgtgc cggtgggggc tggggcaagt accgccaccg catttttatc ttactttgta
     8881 gaaaactacc agcaaaactg gctacatatt gacgcctctg ccacattccg caaaacggcg
     8941 agcgatttat gggcggcagg agcaaccgga ctgggaataa gaacagtagc gaatttattg
     9001 ctttcaaaat agaaacttcg taggggcaaa tcactatttg ctccataaac aattaaataa
     9061 ctatggctaa atcaaattac attacccgtt caggctggca agccttagat caggaattaa
     9121 aatttctatg gcgggaagaa cgcccgaaag tgactcaagc ggtgtctgat gctgccgcat
     9181 tgggtgatcg aagcgaaaat gccgaatata tttacggcaa acgccgtttg agagaaatcg
     9241 accgccgtgt gcgtttttta tctaagcggc tagaggtgct acaaattgtt gattatcacc
     9301 ctaaacaaga aggcaaagtc tttttcggcg cttgggtgga attagaaaat gaagagggcg
     9361 aggcaaaaca gtaccgtatt gttggttgcg atgagttcga cccagcaaaa aactggattt
     9421 cgattgactc ccctgtcgcc cgagccttaa tcggcaaaca ggttgatgat gaaattaggg
     9481 tagaaactcc gcttggtaaa gtgttgcttt atatcaataa gatttggtat gagcaagcga
     9541 gttaattacc cataaagggg cgaaaaattt tcgcccctac acatatttac ccaaacaacc
     9601 gatccatttc ttcaatcaac tgcttagtcg gcttgtcaaa ataaacgccg ttatcatttt
     9661 cgccgttcat tgcccttaag aacaagtaag ccactccgcc gaagtctcgt tcataatcgt
     9721 atttttcacc taaacgggca gttagataac ggtgtaaggc gagagtgtaa agcagatatt
     9781 gcaaatcata gcgttgtctg cccatttccc gttgaatgtg ttctttcgca taattttgtg
     9841 gcagatagcc taagaaattc gatttgtaat caattaagta gaatttctcc tccacttgca
     9901 cgatacaatc tacaaagcct cgcacaaaac cttctaattg cggtaattgc aattcaggta
     9961 aagtttttgc taaagggcta tgttgcttta ataacgcatt taattgatgt aaggctttat
    10021 cattttttaa gcgtaaatag aattgccact cgtttaatcg tttggtttca tcaatcgctt
    10081 ttaagcagaa atttgcctct gccaaagggg tagttagaat acgctcaaac cataatgctg
    10141 ttggttcaat ccattcctcg cttagcccta attgctcgca tactttagca acagcctctc
    10201 tatcaatttg ttcgttaaat tggcaatgct caaaaaagtg atgtaacacc gtgcccactt
    10261 taataccgtg tgggaattgg aatggcgaga aagcggcagt ttcacttgaa taacctgcct
    10321 caatggtttc tatatgtaca tctcgatctt gggctaaatc cattaccctt tctgatttcc
    10381 cttcactaaa acgctcgtgt tgggcataaa gtgaagtaaa gctggtaatt tgaccaacca
    10441 cacggatatt gccactaaag gtttttgctt ggtaatcgtc tgaagattgt tctccttccc
    10501 acagtgagaa aggtaattcc ccggctactt caaccaaatt agcagcaatc cgtttttggc
    10561 taaaataatc tgaaacaggc acttttcctg taggtatttc cccgtctgct aacaagtaat
    10621 ggagtggaga ccagccggaa atctctttcg gcaacactaa gttaagctga gattccgcgc
    10681 gggttaatgc cacatacagc aaacgtaaat cttccgcata agcctcatac tgtagcgaaa
    10741 aacttgcctc ttctgagcct aaacaccaat ccagcgcacc ttgagaattg cgatataaac
    10801 ttaatgctgt ctgcgtgtct ccctcacttt tttgtgaaac aaaaggtaac caaacaattg
    10861 gatattgcaa gcctttcgag ccgtgaatcg tcacaatttt gattagctcc tcttcacttt
    10921 ccaaccgaag ttgttgctcg tcattaaaat cgggcgaatt aacttgcttt tcataccacc
    10981 gcaacagttc agcttcagac tctaacgctt gcgaggtttc ctgcaaaatt tcggttaaat
    11041 gcaataaatc cgtaatcaag cgatccgcat tttccaaacc tttcaaacgt tcgataatgc
    11101 cctgctccaa gtagatttta tgcaacatcg gcagaacgcc ctgctctttc caaatgttgc
    11161 tgtattccac aaactgattg actttcagat cccaaagttg ctcattttcc ttatagcggt
    11221 ggatctctgc cgccgttaag ccccacaagg ttgagcctaa cgccgataat aatgccttgt
    11281 aatgatacgg attcagtgcg gcttgcaata accaacacaa ttctgttgca atttccgaac
    11341 caaatacaga agctgattca gctaaataga cggatttgat attacgtttt gccaacgcct
    11401 ttttgattcg cttagcttgt gaaccttttc ggactaaaat cgcaatatct tttgcagcaa
    11461 aggattgaaa ttcgccgttt ttttcaactc cgaatttgcc ttgagccatc gcctcaagct
    11521 gttgatgaat ttgataagca cacatttcag ccaaatcatc taatttactg ttttccgtga
    11581 tgtagcctac aaaatgccct tgctcactaa ctaactgacc tttttggcta tcagcctcca
    11641 ctgggtgaaa gccaatatcc tcataaagaa acggagagtt atcatttgca aaagaaaaca
    11701 aattattgac cgcttgcacc acttcaggca acgaacgcca gtttttgccc aatgtgaatt
    11761 gttcatcagc ctgctttgct gctcgcaaat acgtgaaaat atccgcccca cggaatttat
    11821 agatcgactg tttcgggtcg ccaatcataa taaagccgtt ctctgcattc tctgccataa
    11881 aaatttggct gaaaatttca tattgggtta aatcggtatc ttggaactca tcgatcatcg
    11941 caaaaggata catcgcccga attttctgag acaaggcttc gcccgtgtgt agatttttca
    12001 acgcttggtt tagcattgtg agtaaatcat caaaactgcg ttgtgggtgc gattgtttgt
    12061 actctgccaa ttttgctttg agagcaatta aaaattgata ctgcaacatt gctgacaagc
    12121 tgttttcaaa acgttccttg taagcggtca aaaaagcctg attttttgca agatgagggg
    12181 aatctatcgg ctcacagctc tttttcgtgc cagccgcaat tttctctgta gtgaataaat
    12241 aaagccctgc cgggaaatgg ttatgttgcg aattagccca ctggttcatc acttccacac
    12301 cggcttcaaa agtggtcgct cgataccaac ctccgtgcag cgtaatttta tgctttaaat
    12361 cgtggcggat agtttcaacc agttcatctg aatgcgtttt ccaataggat ttcacctcat
    12421 taataaactg ctgatattga gccaaatgct cggcaatatc ttgatttaaa gaggcatttg
    12481 gttcaggtaa ttcagtagat aaataacgcc ttaccgcatt gagggcatat tccggcgtac
    12541 caagttgttc ggcaaccgca taagtgatgg ctaaatcttg cggatagaat tgctctcgcc
    12601 agacttcttc acttaatttt ttaagtagat cactttggtt tggctgtaaa tccaagtcaa
    12661 accgcacgcc cgactcaaac gcaaactgaa ccagcatttt ttgacaaaag ccgtgaatgg
    12721 taaacacgct ggcggtatca atttcccgtt cggcaatact taaacgtaac aatgcttcgt
    12781 gaatattcgg aatgagcgga taaatctgtg ccaaaaaatc aaggttgttt cgataggatt
    12841 ttgtactttc cacttccaaa ccatcagctt gatcttttaa aaagtcggca cattgctgaa
    12901 tatttttacg gatacggttt ttcaactctt cggttgctgc tttggtaaat gtcaccacca
    12961 aaatttgttc caccgttaac gggttgcaac caatgccgag caataaacgc aaatacaggt
    13021 tggcaatggt aaaggttttc cctgtacctg ccgacgcttc gattaaaacg gatttattca
    13081 aaggtagttg gataggattt aggtttttca tcagcaaagt tatcttctaa aagtaaaaag
    13141 cactgctatg ttccatagca gagaatctgt tatttaatcc gttctaattt tgcaattaat
    13201 tgtgcttttg gcaccgcttg tatttttcgc atttgccata ataacaagcc accagccaaa
    13261 cttaagccga tacaaaagac taaccaaaaa ccttgagcag ccattggttg tacaatccaa
    13321 tcggttcttg ccaaaatgta gcccagcggc atactcaccc cccaataaca aaacagagta
    13381 acgtataaaa tcggttgggt atgtttataa ccacgcagaa tgccgtttgc taccgcttga
    13441 atggcatccg gtatttgata aaccgccgca aaaatcaata aatgagcggt aatcgcaatc
    13501 gaaatcgggt tgttggtaaa cgcaaaaggg ataaaatttt tcaacaaaat aataatgatg
    13561 gcggcaataa tagctaaagc ggttgcggta atcagtgcgt ggtaacttaa gattttcgcc
    13621 ccctccacat ttttctgccc aagtgtttgt ccgatcataa tggtggttgc aatgccaaac
    13681 gacatcggaa tcataaaaaa tagcgagctg gtttgcaatg cagcttggtg gctagccacc
    13741 acctgtgaac caagtggtga cagaaacagc gatgaggtcg aaaacagcat cacttcggta
    13801 aaaatcgcaa aggcaatcgg cagccctaat ttgcaaagtt ttagcaaaat ttgaccgctt
    13861 ggagcatcaa tccatttctc aaacaaacga atatcttttt gggcagaatt ggtgtagcaa
    13921 taatgcaaca acataaaaaa cataatcaag ttcacaattg cggttgctac accacagcct
    13981 accgctccca tttcaggcaa gccaaatttg ccgaaaatga aaatatagtt tagcggaatg
    14041 ttcagcaata aaccgaaaaa ggtaatccgc atcgcaggtt tagggttaga taatccatcg
    14101 ttcatacaac gtaaactcac cgccagcaaa gcaggaataa gcccaactgc cattactgct
    14161 aaatattgtt gcgatttgat tgaaaactca gccggtgttt gcattaagtc taaaatcaga
    14221 tggctgttta ggaaaattgc cattaatgga atagacattg caaacacaat ccaatagccc
    14281 tgccttactt ggttagcaat taaatggcga ttgctcgagc cgtttaagta agaaacggtt
    14341 ggggtaattg cattcagcaa ccctgacaca aacagaaaga gcggaaagta aatcgaatta
    14401 cttaccgcaa tcgccgagac atcatcatca ctcaccaagc cagccattac aatatccgcc
    14461 agccccattc cggaagctga aagctgagaa ataaaaatgg gtagggatag tttaaataat
    14521 ttgcgggcat tttcaggata ttcttgccat cttaagttca tggtttaatc tctcaaaatc
    14581 taagtatgtt tttatgattg taccttagaa agcggtcgtt tttgccaaat tttttgcaac
    14641 tcaaaagaga aagcctctaa agattgctcc ctagaggctt cagaattaat cagctattat
    14701 tttgctgctt ttaactcttg gtagtatttt tcgtaaagct caattgcatc accaacatca
    14761 tcttgccatt gagatttttg taaaacctct gcagatgggt aaattgctgt atcttcagta
    14821 atttctttcg gtaatacttt taatgcttct acgtttgaag ttgggtaacc aatcgctaac
    14881 gttaattttt cagctacttt tgcacttaat aagtagttga ttaatttatg tgcattttct
    14941 ttgtttttcg catttgccgg aatggctaaa gtatcgaccc aaagcacagg accttctttc
    15001 gggaatacca tatcaaccgg tgcgttttct ttcttcgcaa tacgtacaga accgttccat
    15061 aactgaccta cagaaacctc accagcaata aatgagtttg ccgggttatc agaggtaaat
    15121 gaaagcacat ttggacgtaa ttttttcaac tcttcaaagg cttctttgat ttcatccgga
    15181 ttagttgtat ttgggttttt acctaatttt aataacgcaa tgttgaatac ttcacgagca
    15241 tcatctaata attgtacttt acctgcaaat tcaggtttcc acaaatcacc ccaagaagtg
    15301 aatgtttcac ctttgtaatc tgccgtatta aatgcaatac ccggcgcacc taataattga
    15361 ggtaatgaat atttgtttcc ttgatcgtaa ggtttattta accaatcttg gtttaattct
    15421 ttaataaccg gaagttgtgc gtgatctaat tccgctaaca ttccttcttt cgccatttta
    15481 gatacaaagt agtttgatgg agcaattaca tcataaccgc catctttgcc ttgtaatttt
    15541 aatttagcgt acattgtttc gttagattca agacttgaaa cttcaacttt aatgccggtt
    15601 tctttcgtaa attcatctaa caaaccttca ggcacatatt cagtccaagt ataaaggtga
    15661 actgtttgat ttgttgcttg aggttttgct tcagccgcag ttgcttttgg ctctgccgct
    15721 ttttcttcat tacacgctgt taatgcaact gttgctaaac ctgctgcaaa taaacccgct
    15781 aattttttca tttaagtttt ctccgttaaa gaaaagtgat taaaaaatat agccttgcct
    15841 aagggcggaa aagactaggg cattttaagc ccccccccgt attttgcaag ccttttctga
    15901 ttaaaaagtg aattattttc gcaaaaagaa agagatatgc ttgaaatccc ttaatttatc
    15961 gctatattaa ggaagattta catttccaga ttagtctttt aaaggataaa aaatgaccac
    16021 tcaaaatgaa cacttacaag aagaagtaaa acaagaagaa attcaacctg aagttgtaac
    16081 tgaagaaact caagcggaag aacaaaatac acctcaagaa gaaccgttag ctctcgctca
    16141 agctcgaatt gccgagttag aagcctatat tgcagaagcc gacaaacgtg agcaagatat
    16201 tcagcttagg gctcaagcag aaattcaaaa tatccgccgc cgtgcagagc aagatgttga
    16261 aaaagctcac aaattcgctt tagaaaaatt ctccaaagaa ttgttaacag tggttgataa
    16321 ccttgaacgt ggattagatg cccttgataa agccgtgacc gatgaaacca ctcaagcgtt
    16381 agttgacggc gttgaaatga ctcataaaga attcatcaat acactggcta aatttggtgt
    16441 ggtggcaatt ggcgaagtag gcgaggcatt taaccctgaa ttgcacgaag ctatttcaat
    16501 gcaacctgcc gaaggaattg aagccaacca tgtcagcaca gtgctacaaa aaggctacac
    16561 gcttcacgga cgagtgattc gcccggcaat ggtgatggtg gcaaactaaa ttgtcgattt
    16621 tcgacgaaga tcacaaaatc tcctaaaatt cctgcttgtg attatgctaa attagtttat
    16681 aacttaacca caagaggata attgaaatgg atgcagctat gagcctacga tttgacaaat
    16741 tacgttttgt aaaacgcttg caagaagcca atcaaacacc tgaaatggct gaggcatttg
    16801 ctaatgctct cgatgaagcc ttagagcaaa gtcaaagccc actagcaaca aaagctgatt
    16861 tgcaacttga acttgaaaag ctaaaaaatg aaatcaatac cacgatattt aaagcaatta
    16921 ccttaaatat cacaattctt ggctttttaa tggcaataat gaaatttatt aactagctca
    16981 acgtttaatt aaccactccc ttacttctat gaagtaaggg tttttacgtt ttaatcctat
    17041 gactttacaa tttaacgcag tggcacttct acttgtggtg ctgattattt tagggctgat
    17101 cagccaaaac agtgcggtta ctatttcagc cgccgtattg ctgattatgc aacaaacctt
    17161 actttctaaa tttatcccct ttgtcgatca atacggctta aaaatcggga ttatcatttt
    17221 aaccatcggc gtacttagcc ccttggtttc agggcgaatt acgcttcccg aacttgccca
    17281 actattgaac tggaaaatgg cactctcaat aattgctggc gtgctggtag cgtggctagg
    17341 tggcaggggc gtgaatttaa tgggcagcca gccggtgttg gtaactgggc ttttaatcgg
    17401 cacggtgatc ggcgtggcgt tcttaaaagg cgtaccggtc gggccgttga ttgcggcagg
    17461 gattttgtca ctgattgttg gtaaaaccta atgtagggtg gacgtaagtc cacgcataaa
    17521 atccctattc tgttacgtgg gcttacgccc accctacaat aaatcacaag gtcttaatgc
    17581 aaaagagaaa ttaaatggaa acacctttgc aaaaaaatca taagaaacca ccgcttgtga
    17641 agctggaaaa tatcaccacc gccgatttcc gccgcctgct cggtcgctta aaaggggcgg
    17701 aaaatattaa aaacatcgat cacaagcggt cagttttggc agaaatttcg caagatctca
    17761 ccgcttgtca ggcacgtttt ttcgcacgaa ctcagcacgc ccaaaacctg aaaattgact
    17821 accctgatct gcctgtttcc gctcgccgtg aggaaatttt aaaactgatt agcgaaaatc
    17881 aggtggtggt gatcgcaggg gaaaccggtt cgggcaaaac cacccagtta ccgaaaatgt
    17941 gcttagaact cgggcgtggg gtgaagggct tgattgggca tacccagccc cgccgaattg
    18001 ccgcacgttc ggtggcgact cgcattgccg aagagctgaa atcggaactg ggcgagacgg
    18061 tcggttacaa agtccgcttt aacgatcaag tcagtgaaaa cagcttaatc aagctaatga
    18121 cggacggtat tctgctggcg gaaatccagc acgacagcta tttaaatcag tacgatacgc
    18181 tgattattga cgaagctcac gagcgttcgc tgaacaacga ttttattttg ggttatctga
    18241 aacaaattct gcacaaacgc cccgatctga aagtgatcat cacctcggca actattgatg
    18301 tagaacgttt ttccaaacat ttcaacaacg ccccgattat tgaagtctct ggtcggacat
    18361 tcccggtgga agtgcgttat cgcccgatag tggaagatca agatcaactg caaggtattc
    18421 taaatgcggt ggacgaactg caagccgaag ggcgtggcga tattctgatt tttatgaacg
    18481 gtgaacggga aattcgtgac actgccgaag ccttgcaaaa gcaggaactg cgacatagcg
    18541 aaattttacc cctttacgcc cgcttatcgg ctgccgaaca acaacggatt ttccagccaa
    18601 gcggtgggct aaaccgaatt attctggcga ccaacgtggc agaaacctcc ctcactattc
    18661 cgaatattaa atatgtgatc gacaccggca cggctcgtat ttctcgttat agctaccgca
    18721 ccaaagtgca acgcttgccg attgagccga tttcgcaagc ctccgccaac cagcggaaag
    18781 ggcgttgtgg gcgaacctcg gaagggatct gtatccgcct ctattcagaa gaggatttca
    18841 acagccgtcc acaatttacc gatcctgaaa ttctacgaac taaccttgca gcggttattt
    18901 tacaaatgac ttcgcttgga ttgagtgata ttgccaattt cccgtttgtt gatgcccctg
    18961 acagccgaca aattcaggac gggattcggt tgttggaaga attacaggcg attattccaa
    19021 atgaaaaaat cccctccacc gcttgcgggg gagggctagg gaggggggaa atccgttcta
    19081 atgatggcac tccccccctc ccaacctccc cccgtaaacg gggggatggg tttagattaa
    19141 ccccaatcgg tcgccaactc gcccaactgc cagtcgatcc tcgcttaggc agaatggtga
    19201 tcgaggcggc gaaaaacggt tcgttgcacg aagtgatgat gattgtgtca gctctctcaa
    19261 tccaagaccc tcgtgagcgt ccgcaggaaa aacagcagtc ggcagacgat aaacaccgcc
    19321 gttttgccga taaagagagc gatttcttag cctttgtgaa tttgtggcac tttatccaag
    19381 cccaacaaaa agaactgtcg aaaaaccagt tccgtaatct ctgccgtaag gattatttga
    19441 actacaaccg tgtgcgggag tggcaggata tctaccacca actccgcctt gcagttagag
    19501 aaatgggctt aaaaattaac agtgagccgg caagttatca gccgattcac accgccctgc
    19561 tcgccggctt gttgtcgcat atcggcttga aagataatga aaaaatgcac tatttaggag
    19621 caagaaatgc ccactttttc attttcccga actcggcact tttcaaaaaa cagccgaaat
    19681 gggtaatggc cgcagagctg gtggaaacta ccaaactttg gggacgaatg gtcgctcgca
    19741 ttgagccgga atgggtggaa ccgttggcag tacacctcac taaatccagt tacagcgaac
    19801 cacactgggc gaagtcaaaa ggagcggtaa tggcatcgga aaaagtgtcg ctctacggca
    19861 ttccgattgt ggcacaacgc tcggtgaatt atggctcgat agacccaacc gtcagccgtg
    19921 agatttttat ccgctcggcg ttggtggaag gcgaatgtca caacaattac aaatttttca
    19981 aagaaaatca ccgcttgatc cgtgaagttg aggcattgga acacaaatcc cgccgccgtg
    20041 atattttggt ggacgagcag gtgctgtttg agttttacga tcagcggatt ggcaccgaag
    20101 ttgtgtcgag caagcatttt gatacttggt ggaaacaggc aagcaaaaaa gatcctgaac
    20161 tgctgaactt tgaaaaatcg ttcctgatca acgacaacgc caaccttgcc agcgagctgg
    20221 atttcccgaa tttctggcat caaggcgatt taaaactcaa actgagctat cagtttgagg
    20281 tcggaaaaga tcacgatggc gtgacggtgc atattccgct accgctgctt aaccaagtgg
    20341 aacccgaagg tttcgattgg caaattccgg ggctacgcca cgagctgatc gtctcgctga
    20401 ttaaatcttt accgaaatcg ctacggcgaa attttgtgcc ggcgccgaat tatgcggacg
    20461 cctttttagg gcgagccgag ccgtttaaaa aaccgttgct ggacaatcta agccacgaac
    20521 tacgccgaat gacgggtgta ttggtcgagc ctgaacagtg ggatttaagc caactgccgc
    20581 cacatttgcg gatgactttc cgtgtgattg atgataaagg caagaaactg caagagagcg
    20641 aaaaccttga tgagctgaaa tttgccttga aagatgaggt gcagaacacc ctttccaaca
    20701 ttgccgatga cggcattgag caaagtggtg tgcatatttg gaattttgcc gaattgccac
    20761 agttctatga gcagaaaaaa gcccatttca gcgtgaaagc ctaccctgcg attgtcgatg
    20821 aacaaacggc tgtgggggtg aaactgtttg aaacggaatt tgagcaggct cgtgcaatgc
    20881 aggcaggact tcgccgtctg ctgttgctaa atgtgccatc gccgattaaa tatctacacg
    20941 aaaaactgcc gaacaaagcc aagctgggct tatattttgc cccgttcggc aaagtattgg
    21001 agctgattga cgactgcatt gcctgtgcgg tagatcagct ggtagaagag ttcggcgggt
    21061 ttgtctggac ggaggaaaaa ttcacccaac tgcacgaatt tgtgcgggca aatttaaacg
    21121 ataaaaccgt agaaattgcc aaacaggttg aaaagtgcct cacactggcc tacgagctaa
    21181 acaagcggtt aaaaggcaag ctcgatttta cgatggcgtt tgcgttaagc gacatcaaaa
    21241 cccaaatcga agggctgatt taccccgact ttgtcaccaa aaccggctac gcccgccttg
    21301 cagatttata ccgttatttg accgctatcg aacgccgttt ggataaactg ttggtggaca
    21361 gcaacaccga ccgagccaaa atgctacggg tggaagcagt gcaagaggca tataaacagc
    21421 tccttgccaa actgccaaaa tccaaagcgg tgccggacga ggtactggaa attcgatata
    21481 tgatcgaaga actgcgggtc agtctgttcg ctcaacagct cggcacaaaa tacccgattt
    21541 cggataagcg gattttgaat gtgatcaatg aaataaagta atattcccta tacaacaagc
    21601 ggtcagataa gtaaaaaatt ttgcaactct gaccgcttgt tttctcgaat acctattcct
    21661 ctcgcttcag aagcaaacct gctacatttt tttgattaaa aaaatctcaa gataaaaatt
//
LOCUS       DANMGB010000023        21227 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.023, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000023 DANMGB010000000
VERSION     DANMGB010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21227
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.023"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..167)
                     /locus_tag="PXG19_000647"
     CDS             complement(<1..167)
                     /locus_tag="PXG19_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6065971.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(373..2034)
                     /locus_tag="PXG19_000648"
     CDS             complement(373..2034)
                     /locus_tag="PXG19_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6065972.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXG19_000649"
     CDS             complement(2047..3516)
                     /locus_tag="PXG19_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL6065973.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXG19_000650"
     CDS             complement(3564..5915)
                     /locus_tag="PXG19_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6065974.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXG19_000651"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXG19_000651"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6065975.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXG19_000652"
     CDS             complement(7045..7383)
                     /locus_tag="PXG19_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL6065976.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXG19_000653"
     CDS             7676..8995
                     /locus_tag="PXG19_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL6065977.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXG19_000654"
     CDS             9113..9475
                     /locus_tag="PXG19_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL6065978.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXG19_000655"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXG19_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL6065979.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXG19_000656"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXG19_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL6065980.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVEWQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXG19_000657"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXG19_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL6065981.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXG19_000658"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXG19_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL6065982.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXG19_000659"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXG19_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL6065983.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            15009..16193
                     /gene="tuf"
                     /locus_tag="PXG19_000660"
     CDS             15009..16193
                     /gene="tuf"
                     /locus_tag="PXG19_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL6065984.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
     gene            16490..17788
                     /gene="tig"
                     /locus_tag="PXG19_000661"
     CDS             16490..17788
                     /gene="tig"
                     /locus_tag="PXG19_000661"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL6065985.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            17904..18356
                     /locus_tag="PXG19_000662"
     CDS             17904..18356
                     /locus_tag="PXG19_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6065986.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            18377..18877
                     /gene="secB"
                     /locus_tag="PXG19_000663"
     CDS             18377..18877
                     /gene="secB"
                     /locus_tag="PXG19_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL6065987.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            18984..19994
                     /gene="gpsA"
                     /locus_tag="PXG19_000664"
     CDS             18984..19994
                     /gene="gpsA"
                     /locus_tag="PXG19_000664"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL6065988.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            20010..20825
                     /gene="cysE"
                     /locus_tag="PXG19_000665"
     CDS             20010..20825
                     /gene="cysE"
                     /locus_tag="PXG19_000665"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL6065989.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            20874..>21227
                     /locus_tag="PXG19_000666"
     CDS             20874..>21227
                     /locus_tag="PXG19_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6065990.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLAL"
BASE COUNT         6403 a         4076 c         4570 g         6178 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atggcagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaagt gtctaaagaa aaatttgaac gtacaaaacc gcacgttaat gtgggtacaa
    15061 tcggccacgt tgaccatggt aaaacaactt taacagcagc aatcactacc gtattagcaa
    15121 aacacttcgg tggtgcagct cgtgcatttg accaaatcga taacgcgcca gaagaaaaag
    15181 cgcgtggtat caccatcaac acttcacacg ttgagtacga tacagcaact cgtcactacg
    15241 cacacgttga ctgcccggga cacgcggact atgttaaaaa catgattacc ggtgcggcac
    15301 aaatggacgg cgctatctta gtagtagcag caactgacgg tccaatgcca caaactcgtg
    15361 agcacatctt attaggtcgc caagtaggtg taccatacat catcgtattc ttaaacaaat
    15421 gcgacatggt agatgacgaa gagttattag aattagttga gatggaagtg cgtgaacttc
    15481 tttcacaata cgacttccca ggtgatgaca ctccaatcgt acgtggttca gcgttacaag
    15541 cgttaaacgg cgtagcagag tgggaagaga aaatccttga attagcaaac cacttagaca
    15601 catacattcc agagcctgag cgtgcgattg ataaaccatt cttattacca atcgaagacg
    15661 tattctcaat ttcaggtcgt ggtacagtag taacaggtcg tgttgagcgt ggtatcatcc
    15721 gcactggtga tgaagttgaa atcgtaggta tcaaagatac agcgaaaaca accgtaacag
    15781 gtgttgagat gttccgtaaa ttattagacg aaggtcgtgc gggtgagaac gtaggtgcat
    15841 tattacgtgg tactaaacgt gaagaaatcg aacgtggtca agtattagcg aaaccgggtt
    15901 caatcactcc acacacagac ttcgaatcag aagtttacgt attatcaaaa gaagaaggtg
    15961 gtcgtcacac tccattcttc aaaggttacc gtccacagtt ctacttccgt acaacggacg
    16021 taacaggtac aatcgaatta ccggaaggtg tagagatggt aatgccgggc gacaacatca
    16081 aaatgactgt tagcctaatt cacccaatcg cgatggacga aggtttacgt tttgcgattc
    16141 gtgaaggtgg tcgtacagta ggtgcgggcg ttgtagctaa aatcatcaaa taattaagat
    16201 tgtttgataa attgaaaagc taaataaaaa ctagaaagag gcatatcgaa aggtatgcct
    16261 cttttgcttt tatgccgatt aagctagcca tatcatatca tttcatttgc aaaaatcggt
    16321 gaaaaaagac cgcttgtagg caagcccatt gacaagcagt cagattttag ggatttttta
    16381 caaaactgtt tatttgcgaa tgagtttctt ctcgacagtt tcttgataga acgctacaat
    16441 aaccgtctat ttgtatatct tttttatatc cctaaaccga ggtttaagaa tgtcattttc
    16501 aattgaaaca ttagaaggct taaaacgccg tgttactatt aacgtaccag ctgataaaat
    16561 cgaagcagca tacaaagaac aattaaaagg ctatgcgaaa aatgctcgtg tagatggctt
    16621 ccgtaaaggt aaagtgccac actcaattat cgaacaacgt tttggtattg cagcccgtca
    16681 agatgtgtta tctgatgaaa tgcaacgtgc attctttgaa gccgtcattg ctgaaaaaat
    16741 caacttggca ggtcgcccta ctttcacgcc aaacaactac caaccaggtc aagacttcag
    16801 ctttactgcg gaatttgaag tattcccaga agtggaatta aaaggtttag agaatatcga
    16861 agtagaaaaa ccggttgttg aaatcgcaga cgctgattta gacaaaatgg tagatgtatt
    16921 acgcaaacaa caagcgactt ggtcagaaag ccaagaggct gcaaaagccg aatctcgtgt
    16981 aactattgat ttcgttggtt cagtagatgg tgaagaattc gaaggcggta aagcatcaga
    17041 cttcgtgtta tttatggggc aaggtcgtat gatcccgggg tttgaagacg gaatcgtagg
    17101 tcgtaaagcg ggtgagcaat tcgacattga tgtgactttc ccagaagaat accacgctga
    17161 aaacttaaaa ggcaaagcag cgaaatttgc aattaccttg aaaaaagtag aagagatggt
    17221 attaccggaa ttaaccgaag agtttgtgaa aaaattcggt aatgcaaaat cagtggaaga
    17281 attacgcgca gaaattaaga aaaatatgca acgtgaactt aaaaatgcag tcacttcacg
    17341 tgtgaaaact caagtaatca acggcttaat tgctcaaaat gatgttgaag tgccggctgc
    17401 tgcggttgaa gaagaaatca acgtattacg ccaacaagcg gtgcaacgtt ttggtggtaa
    17461 gcctgaaatg gcagctcaat taccggctga attatttgaa gcagaagcta aacgccgtgt
    17521 tcaagtgggc ttattattat cttcaatcat cggttctaac gaattaaaag tagatgaaaa
    17581 acgtgttgaa gagatgatcg cagatatcgc ttcagcttac gaacaaccgg ctgaagtggt
    17641 tgctcactat gcgaaaaacc gtcaattaac tgaaaatatc cgcaatgtgg tattagaaga
    17701 gcaagcggtt gatgcagtgc tagcgaaagc gaaagtgact gaaaaaacaa tgtcatttga
    17761 cgaagtaatg tcacaacaag ctcaataatt tccttataag gtgggctttt gctcaccttt
    17821 tattactttt acaagcggtt aaatttagtg ataaatttgc atcaaaacga ccgcttattt
    17881 tttgatgtta aggaaattga attatggaac aactaacttt tgctcaacaa ttagagcaat
    17941 tttttgccaa tcataccttg atggtgtttg cttgggttgc attattgatt gcggtaattt
    18001 ttagctttta taaaagtgca acgcaaaaat ataaaattgt cgataacgca caggctacac
    18061 agctgattaa taaagaagag gcagtagtgg ttgatttacg ttctgatgaa gagttccgtg
    18121 ccggtcatat tattgatagc attcacgtgt taccgtcaga cattaaagca gctaaaatca
    18181 atcagattga taaatacaaa gctcgcccgg taattgtagt agacactaat gacttcactt
    18241 caggtggtgt tgcggcagat cttgctaaac aaggctttag cagagtttat gtattaaaag
    18301 aagggattgg cggctggcgt gcagcaagcc taccaactat taaaaaacat aaataatcta
    18361 ttattaagga aattttatgt cagaagaaaa tcaagttgca tcaacagaag aagctacaca
    18421 aacccctttt gagcttcaaa ttcaacgcat ttatgtaaaa gatgtttcat ttgaagcacc
    18481 aaatttaccg actattttcc aacaagagtg gaaaccacaa ttaggctttg agttagatac
    18541 tgaaaccaaa gaaattggtg aagatttata cgaagttacc ttacacatta cggtgcaaac
    18601 tacgttagaa gacagcaatg atgtcgcttt catttgtgaa gtaaaacaag caggtgtgtt
    18661 tactattaaa ggtttagaag gcattcaact tgctcactgc ttagcttcac aatgtccgaa
    18721 tgtgctttat ccttatgctc gtgagctaat ctcaagcctt gtgaatcgtg gtacattccc
    18781 ggcattaaat ctctcaccgg taaactttga tgcgttattt atggattatc tccaacgcca
    18841 agaagaaagt gcagaagagc cggctttagc gaactaagca ttttagatag aaaataggta
    18901 tgcaaggcat acctattttt ttacaagcgg ttattttttc tactattttt tgcaattttc
    18961 taaataagcc gaacagagga aatatgagtg aaatctattc tgccccaatc acggtattag
    19021 gtgcaggttc ttatggaaca gctttagcca ttgccctttc tcgaaatggt cacaaaacct
    19081 atttatgggg gcataatccc gacaaaatgg ccgttttggc atcagagcga atgaaccaag
    19141 attttctgcc tgatattgta ttcccggaag ccttagaaat tgtcgcagat cttgctacag
    19201 cggtacaaaa atcgaaagat ctgctgattg tggtgccaag tcatgtattc tctgaagtat
    19261 tggctcaaat caagcctttt ttgtcccaag atcaccgtat aatgtgggca accaaagggc
    19321 tggagcgaga taccgggcgt ttgttgcaaa cggtagctaa ggaaattttg ggggaaattt
    19381 acccgcttgc ggtgctttcc ggtccgactt ttgccaaaga actggcggca ggcttgccaa
    19441 cagcgatttc gcttgcctca actgatcctg tttttgccga tcaaatgcaa aaacggagtc
    19501 actgttccaa agcgttccga gtttacctca acaatgatat tatcggtgtg caactcggtg
    19561 gggctattaa aaatgtgatt gcaattggtg ccggtatttc agacggaatg ggattcgggg
    19621 cgaatgctcg taccgccttg attactcgag ggctggcgga gattagccgt ttgggtgttt
    19681 cgctcggggc tgatccgaaa acctttaccg gaatggcggg gcttggagat ttagtgctga
    19741 cgtgtaccga taaccaatcc cgaaaccgcc gatttggttt ggcgttaggg caaggaaaat
    19801 cggcagaagt cgcgatagcg gaaatcggtc aagtggtaga aggattttat aataccaaag
    19861 aagcctattt gctcgctcaa acacagggcg ttgaaatgcc gattgtagaa caaatttacc
    19921 aaatgttatt ttgtggcaaa caggcttcgg atgtggtgaa aaccttgttg gggcgtgaac
    19981 gaaaaggcga ataaagaaag gagaataaaa tgcagcagag tgaaattaat cagatttggc
    20041 aagcaattcg agatgaagcc aaagagctgg cgaattgtga acctatgtta gcaagttttt
    20101 tccacgctac cattttaaaa caccataatc taggcgatgc gttaagttat attttggcga
    20161 ataagttaga aaacccgatt atgccggcaa tcgccttaaa agaaattatt gaggaagctt
    20221 atcgagcaga gccacaaatt attgctagtg cagcttgtga tattaatgcg gtcagaacta
    20281 gagatcctgc ggtggacaaa tggagtacac ctctgctgta cttaaaaggc ttccacgctt
    20341 tacaaagcta tcgggtgacg cattatcttt ggaatcaagg caggaaagca ttagcggttt
    20401 atttacaaaa tgaaatttct gttgcctttg atgtggatat tcatcctgcg gcaaaggtcg
    20461 gttgcggaat tatgtttgac cacgccaccg gtattgtggt gggtgaaacc tctgtgatcg
    20521 aaaatgatgt ctcgatttta caaggtgtaa cactaggcgg tacagggaaa gaaaatggcg
    20581 accgccaccc gaaaatccgt gaaggcgtga tgattggagc cggtgcaaaa attctcggta
    20641 atattgaaat cggacgctat tctaaaatcg gggcaaattc agtggtgcta caacctgtgc
    20701 ctgatcacgc cacagcagca ggtgtaccgg ctcgcattat cggcaaatcc tctgaacaaa
    20761 aaccggcttt tgatatgaat caatactttg aagatgagca aggtttgttt ggtgatggga
    20821 tttaggtaag agttattcct ttaatttatg atttagacat tgctaagtac aagttgcaat
    20881 taacctttaa tgattttcag aactactata atggtaaagg ggatttaact atgttttctt
    20941 tttatggtaa gaaaacatgg gaaaatggca tttatgtagg gattgatggt agcattgggc
    21001 gtgcgaataa caaattaagc catcaaagcc agacgataaa actagccaga aatgtatatt
    21061 ctttaggatt aacggtaggt aaaacgttgg aagttgcaag ttttaaccta caaccgtcat
    21121 ttggtatgcg ctatcatcat ttaacatctg caaatgccca attagagaac acaaaatttg
    21181 agactgatag ggtagatctt ttggccattc aagctggttt agcatta
//
LOCUS       DANMGB010000024        21031 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.024, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000024 DANMGB010000000
VERSION     DANMGB010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21031
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.024"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(203..1552)
                     /locus_tag="PXG19_000667"
     CDS             complement(203..1552)
                     /locus_tag="PXG19_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6065991.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            1739..2254
                     /locus_tag="PXG19_000668"
     CDS             1739..2254
                     /locus_tag="PXG19_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL6065992.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            complement(2308..3306)
                     /gene="gntR"
                     /locus_tag="PXG19_000669"
     CDS             complement(2308..3306)
                     /gene="gntR"
                     /locus_tag="PXG19_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HDL6065993.1"
                     /translation="MRKPKRPTLQDIATHLGITKMTVSRFLRDPNTVAKETGERIAQA
                     IELFGYIPNRAPDILSNAKSRAIGVLVPSLTNQVFADVIKGIEQITDQASYQTMLAHY
                     GYSEQKEEQRIESLLSYNIDGIILSENHHSPRTLKMLEVANIPVIEIMESGECGIQQA
                     VGFDNISAAQAMVETMIHRGCRQVVYFGARMDKRSQLKMQGYEQAMLKHGLSPHSITT
                     AEHSSFTLGASQLKQALQHIPQLDGIFCTNDDLAIGALFECQRLGIHVPQQIKIAGFH
                     GHDVGQSLTPQLASVITPRLEIGRVAAQELLNRIHGVPQQSSIINLGYQIHLGESV"
     gene            complement(3399..4559)
                     /locus_tag="PXG19_000670"
     CDS             complement(3399..4559)
                     /locus_tag="PXG19_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL6065994.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAAKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4682..5068)
                     /gene="rplQ"
                     /locus_tag="PXG19_000671"
     CDS             complement(4682..5068)
                     /gene="rplQ"
                     /locus_tag="PXG19_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL6065995.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(5104..6093)
                     /gene="rpoA"
                     /locus_tag="PXG19_000672"
     CDS             complement(5104..6093)
                     /gene="rpoA"
                     /locus_tag="PXG19_000672"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL6065996.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(6124..6750)
                     /gene="rpsD"
                     /locus_tag="PXG19_000673"
     CDS             complement(6124..6750)
                     /gene="rpsD"
                     /locus_tag="PXG19_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL6065997.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6779..7168)
                     /gene="rpsK"
                     /locus_tag="PXG19_000674"
     CDS             complement(6779..7168)
                     /gene="rpsK"
                     /locus_tag="PXG19_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL6065998.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7185..7541)
                     /gene="rpsM"
                     /locus_tag="PXG19_000675"
     CDS             complement(7185..7541)
                     /gene="rpsM"
                     /locus_tag="PXG19_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL6065999.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7679..7792)
                     /gene="rpmJ"
                     /locus_tag="PXG19_000676"
     CDS             complement(7679..7792)
                     /gene="rpmJ"
                     /locus_tag="PXG19_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL6066000.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7817..9136)
                     /gene="secY"
                     /locus_tag="PXG19_000677"
     CDS             complement(7817..9136)
                     /gene="secY"
                     /locus_tag="PXG19_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL6066001.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(9139..9573)
                     /gene="rplO"
                     /locus_tag="PXG19_000678"
     CDS             complement(9139..9573)
                     /gene="rplO"
                     /locus_tag="PXG19_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL6066002.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9578..9754)
                     /gene="rpmD"
                     /locus_tag="PXG19_000679"
     CDS             complement(9578..9754)
                     /gene="rpmD"
                     /locus_tag="PXG19_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL6066003.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9761..10261)
                     /gene="rpsE"
                     /locus_tag="PXG19_000680"
     CDS             complement(9761..10261)
                     /gene="rpsE"
                     /locus_tag="PXG19_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL6066004.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10276..10629)
                     /gene="rplR"
                     /locus_tag="PXG19_000681"
     CDS             complement(10276..10629)
                     /gene="rplR"
                     /locus_tag="PXG19_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL6066005.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10644..11177)
                     /gene="rplF"
                     /locus_tag="PXG19_000682"
     CDS             complement(10644..11177)
                     /gene="rplF"
                     /locus_tag="PXG19_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL6066006.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11194..11586)
                     /gene="rpsH"
                     /locus_tag="PXG19_000683"
     CDS             complement(11194..11586)
                     /gene="rpsH"
                     /locus_tag="PXG19_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL6066007.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11623..11928)
                     /gene="rpsN"
                     /locus_tag="PXG19_000684"
     CDS             complement(11623..11928)
                     /gene="rpsN"
                     /locus_tag="PXG19_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL6066008.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11940..12479)
                     /gene="rplE"
                     /locus_tag="PXG19_000685"
     CDS             complement(11940..12479)
                     /gene="rplE"
                     /locus_tag="PXG19_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL6066009.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12497..12808)
                     /gene="rplX"
                     /locus_tag="PXG19_000686"
     CDS             complement(12497..12808)
                     /gene="rplX"
                     /locus_tag="PXG19_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL6066010.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(12819..13190)
                     /gene="rplN"
                     /locus_tag="PXG19_000687"
     CDS             complement(12819..13190)
                     /gene="rplN"
                     /locus_tag="PXG19_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL6066011.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(13413..15248)
                     /gene="glmS"
                     /locus_tag="PXG19_000688"
     CDS             complement(13413..15248)
                     /gene="glmS"
                     /locus_tag="PXG19_000688"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL6066012.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(15296..16057)
                     /locus_tag="PXG19_000689"
     CDS             complement(15296..16057)
                     /locus_tag="PXG19_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL6066013.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(16214..16414)
                     /locus_tag="PXG19_000690"
     CDS             complement(16214..16414)
                     /locus_tag="PXG19_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6066014.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            16639..17673
                     /locus_tag="PXG19_000691"
     CDS             16639..17673
                     /locus_tag="PXG19_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066015.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            17741..19777
                     /locus_tag="PXG19_000692"
     CDS             17741..19777
                     /locus_tag="PXG19_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6066016.1"
                     /translation="MQNFSFSRPLVWVLIGLLGFLLLPSKALDYGLFDSTSDELLAAM
                     GWASLNITWAWFLPLLVFLLPNSTACKTRAKLELVGLGVLFAFIFLSAIVLKISLGYA
                     VLPLIIAIMGLATPNLATLKVMQGDRFIIGSLLSIILLIFFFIVYPTIAIFVSMFYNG
                     SEFVPSQVLTILQQPYVVRVIGNSLSVAGTVGVLSTLFGLAFALYTTRIAKRSAFIGR
                     IFSILPIVTPPFVVGLGVTLMLGRSGYVTEFLVDYFGFANNWLYGFTGIVIAHTLALT
                     PMSFMILEGALKSIHPSVEEAAYTLRSNRYQAFFNIIFPLLKPALANSFLVVAIQSLA
                     DFSTPLVLGGSFDVIATQIYFYIAGSQLDYASASTLGAILLVFSLAIFVIQYLWIGNR
                     SYVTVSGKSYRGDVQDLPSGMKWLIICTLLFWGTFNLVLYGSIFYGSFTVNWGVDYTL
                     TLDNYIKLFGQGFSDGGFPSLIQTVIFAAAAAPITALFGLLIAYVTVRRDFKGKKTLE
                     FLTLLCFAVPGTVAGVSYILAFNDAPIYLTGTGMIIILSMVMRNMPVGMRAAIAGLGQ
                     LDKSLDEASLSLKAGSFKTMLFVVLPLLKPALLSALVTSFVRAMTTVSAIVFLVTADT
                     RVATSYILNRVEDGEYGIAIAYGSILIVVMMAIILIFDWIVGDTRIARSKAKKM"
     gene            19875..20924
                     /gene="fbpC"
                     /locus_tag="PXG19_000693"
     CDS             19875..20924
                     /gene="fbpC"
                     /locus_tag="PXG19_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL6066017.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         5952 a         4691 c         4170 g         6218 t
ORIGIN      
        1 tccaataaaa agttatattt acagaatgaa tacgagacta aataatgcag cagaaaggtt
       61 ttggaataat ttacaaaata ttcagtttat aaatgaagat atattaaata aaccctaaca
      121 ttctataata agaaaaagcg gtcgattctc tgccaaattt tgcaaatttt agaagaaaac
      181 agaccgcttg tcagggttgg aattagagta accagctgcc aatcaatgca caggcaaaac
      241 cggttaaacc gatggcagtt tcaagcattg tccacgtttt gagggtagtt ttttcgtcca
      301 tttcaaggaa acggctcatc agccagaaac cggagtcatt gacgtgggaa agcaccgtcg
      361 caccggaggc gatagcaatc acgataaaac agaggtcgaa ctggcttaaa tcagtcgctg
      421 ccgccacagt tggcgcaatc aacgctgctg tggtggttaa agcaacggtt gccgagcctt
      481 gtgcgacacg gaataccgta gcaataataa aggcggcaac cacaatcggc attccggtgt
      541 ctttcatcat ttccgataat acatcgccaa tcccgctggc acgcaacacg ccaccaaaca
      601 ttccgcctgc accggttact aagacaatcg agcagattgg gccaagggca ttgttacaga
      661 ttttttcgat ttggtcgaaa ctgcgattat cccgcaacag cataatcgcc acaattaagg
      721 taatcagtaa agcaacaggg gttttgccga ttaagcgaag gctctgcacc cacatttcac
      781 tgccatcaat cactttagca acggagaggg tattcaagcc ggtatcaaac aaaatcagga
      841 taatcggcag caccaacacc gtgagtacct tgccaaaact tggcgggttt tgtactgcca
      901 tttcgtttgc cgataagccg tttaaaaacg ctttcggcaa atcaacgtga atgcgtttgc
      961 tgataaattg gctgaacagg taagtgccga tataccacgt tgggattgca caaaccaagc
     1021 ccaccaagac taacagcccc atattcacac caagcagatc gccggaggca accgggccgg
     1081 ggtgcggagg tagaaaggcg tgcattaccg caaacgcacc ggcagacgga aacgcatagc
     1141 gcaacaccga accgccgaac tgttttgcca cgctaaaaat aatcggtaac atcaccacca
     1201 agccggcatc aaagaaaatc gggaagccga ataacagcga ggcaacgccc aacgcaaaag
     1261 gcgcacgttc tttgccgaat ttattgataa gcgtatccgc aagcactttc gccccgccgg
     1321 tgatttcaag caagcgacca atcatcgccc caagccccac cagtaacgcc actgatgcca
     1381 gcgtactacc aaaaccattc aacaatgttg gcaggatttt atctaccgga ataccggcag
     1441 ctaatgcagt gagcaggctc acaataatca atgccacaaa agcgtggact ttaaatttca
     1501 taatcagcac cagcaataaa atgatggcag caaacataat gaacagtaac ataggatctc
     1561 ctaaggttga attgttatcg gtaacataac caaaaagcag tttagagtaa acggttgcag
     1621 ggcttttatt ttaaaaatgt gatctacttc aagttttctg gaaatagcag atgatttttc
     1681 agcataacct gttacattaa cggctaagtt aacattacca gtaacacaag gaaattcaat
     1741 ggcaaacggc aaagcattta ttttgatggg cgtgtccagc accggcaaaa ccagcgtggg
     1801 aacggcagtc gcacagcggt tgggaataaa attgattgat ggggacgact tacaccctcg
     1861 tgccaatata ctgaaaatgg caagtggcac gccactcaat gatgcagatc gcacaccgtg
     1921 gttggagcgg attaacgatg cagtgttcag ttttgaacaa aaaagcgaaa aagggattat
     1981 cgtctgctca gcattgaaga aaaagtaccg agaccagatc cgacaaggca atgccgatgt
     2041 gacttttcta ttcttgcacg gctcgtttga actggtgctg gctcgaatgc aacaacgcaa
     2101 agggcatttt atgaaaccgg aaatgcttca aagccaattt aatacgctgg aaattccgca
     2161 ggcagacgaa ccagatgtga tatttattga tattgacggc agttttgacg aggtggtgga
     2221 gcgttgcgtg aaagcagttg agccgttgct ttaatcacaa gtggtggatt ttgcggattt
     2281 ttttgcaaat ttaaccgctt gtccgggcta cacactttcc cccaaatgga tctgatagcc
     2341 caagttaatt atggagcttt gttgtggtac gccgtgaata cggttgagca gctcttgggc
     2401 ggcaactctg cctatttcaa ggcgaggtgt gatgacgctg gcaagctgtg gcgtgaggga
     2461 ttgcccgaca tcgtgtccgt gaaagccggc gattttaatc tgctgcggca catgaatgcc
     2521 taaccgttgg cactcaaata atgccccgat tgccaaatcg tcattggtgc aaaaaatgcc
     2581 gtctagctgc ggaatgtgtt gcagggcttg ttttagctgg cttgcgccaa gcgtgaaaga
     2641 agaatgctct gcagtagtaa tgctgtgtgg gcttaagccg tgtttgagca ttgcctgttc
     2701 gtagccctgc attttcagct gagagcgttt atccattctc gccccgaaat acaccacctg
     2761 tcggcagcct cgatgaatca ttgtctcgac cattgcttga gccgcagaaa tattgtcaaa
     2821 tccgaccgct tgttgaatgc cacattcgcc gctttccatt atctcaatca ccggaatatt
     2881 cgccacttcc agcattttca aggtgcgggg cgagtggtga ttttccgata agataatgcc
     2941 gtcaatattg tacgaaagca gcgactcaat ccgctgctct tccttttgtt cgctgtaacc
     3001 atagtgggcg agcatggttt gatagctggc ttggtcggta atctgctcaa tgcctttaat
     3061 cacatcggca aacacttgat tggtaagcga aggaaccagc acgccaattg cacggctttt
     3121 ggcattcgag agaatatccg gtgcacggtt tgggatatag ccaaacagct caatcgcttg
     3181 tgcaatccgc tcgccggtct ccttggcaac ggtgtttgga tcccgcaaaa agcgactgac
     3241 cgtcattttg gtaatgccga gatgggtagc gatgtcttgc aaagttgggc gtttcggttt
     3301 tctcattgga atagataacg aaaaaattta atttcgctga ttataactga agataaggca
     3361 ataattgcaa aatattcggt gaaattgacc gcttgttact actcttgcct gaactctttc
     3421 ggggttttac caaactcttt tttaaacacg gcatagaaat attgtaaaga gggataaccg
     3481 cacacattgg caatttcttg ggtcgaaatc tcggtaaatt tgagcatata tgttgctctt
     3541 gctaattttt cctcgtgaat cacctggtga attgtcttat tcatttcctg cttaaaacgc
     3601 tgttcaaggt tagagcggga aattttaaga tgatccagta cttgctctac tttaatgcct
     3661 tggcaagctc ggtgacgaat aaagtgcata gcttggatta ccattgggtc ttgcaaagaa
     3721 cgataatcgg tcgaacggcg ttcttccact tttaccggcg ggattaaaat cggcttggtt
     3781 gaaaccggta gattatttaa ttttcgatat aataacttcg cagcgtgata gccgatttgt
     3841 gatgttcctt gtgtgactga agaaagagaa acccgagaga ggtattgaat caactcttcg
     3901 ttatcaatgc cgatcacgca aagttgttca ggtacagcga tttttaaatg ctcacaggtt
     3961 tgaagcaggt gtcttgccct tgcgtcagta acggcaataa tgcccgtgtg ggctggtaag
     4021 gtttgtaacc actcgcctaa tttggcttgt aattcaaccc aattatctga atgaaattga
     4081 tcaccaatat aacaatttgg gtgatgttca tatttttcca tcaactgaat aaaggcattt
     4141 tttcgctcta tcgcccaatg tttttccgtt tctgcaggat agccgtaaaa cgcaaattgg
     4201 ttgattcctt tttgttttag gtgtaaaaat gctgcctcaa ctaaggcgta attgtcggta
     4261 gcaacataag gaaggtcagg gtaatagtca gggttttggt aagaaccgcc tactgctaca
     4321 atggggacgt caatatcttt aagtagctca actgtttcca aatcgtcaaa atcggcaata
     4381 atgccgtcaa tcgacaggct ttcgatacta tttttatgat agacaaaatc atcttccaca
     4441 aaaatatccc aagtacattg tgatgcttga ataaactgcc caatgccctg cattactcct
     4501 ctgtcataaa ttttgttagc attaaaaagt aaggcaattt tataagattg ttctatcatt
     4561 acttcctcca gtacccactt tcaaaagtaa ctataaaata aaattatttt ttgatcaaaa
     4621 cgaataaaag aataaaaccc cggtatttct accagggttt taagctcaat tttgattaag
     4681 attattccgc agctgcttca gttgcaactt ctgggcgatc cactaactca atgtaagcca
     4741 ttggagcatt atcacctgca cggaaaccac attttaaaat gcgagtgtaa ccacccgcac
     4801 gttgtgcaaa acgtggacct aattcattga ataatttagc aactgtatca acgttgcgtg
     4861 tacgggcaaa agctaaacgg cgatttgcaa cgctgtctgc tttagctaaa gtaattaacg
     4921 gctcaactac acggcgtaac tctttcgctt ttggtaaagt tgtcttgatg atttcgtgtt
     4981 caacaagcgc acttgccata ttacggaaca tcgcttggcg atggctgctg ttacggttta
     5041 attgacgtcc actcttacga tggcgcataa cctattcctt cttagaaaat ctataccgaa
     5101 aaactagtct tctgcaatac ttgcaggtgg ccagttttca aggcgcatac cgagtgataa
     5161 accacgagaa gcaagaacat ccttaatctc tgtaagagat tttttaccca agttcggggt
     5221 tttaagaagt tcaacttctg tacgttgtac taaatcaccg atatagtgaa ttgtctctgc
     5281 tttcaaacag ttagcagaac gaactgtcag ctctaggtca tctactggac gaagaagaat
     5341 aggatcaaat tccggttttt cttctttcac ttcaggttga cgaacatcac gcaaatcaac
     5401 gaatgcagca agttgttctg ctaaaatcgt tgcagcacga cggatagctt cttcaggatc
     5461 taacgttccg ttagtttcca tctcaataac aagtttatct aagtctgtac gttgttcaac
     5521 acgagcagct tcgacattgt aagcaatgcg atctacaggt gaaaaacgtg catctactaa
     5581 taaacgaccg atagggcggt catcgttttg agtatgaaga cgtgctgatg caggaacata
     5641 acctcgacca cgttgaacac gaatgcgcat attaattgat gcattcttat ctgttaaatg
     5701 acagattacg tgatcaggat tcacaatttc tacatcgcca tcgtgtgtga tgtcggctgc
     5761 agttacaggg ccaattccag atttatttag tgtcaaaata atatcatctt tattttgcac
     5821 ttttaccgct agacctttaa ggtttaataa tacctcaaga atatcttcct gaacgccttc
     5881 tttgctgctg tactcatgca gtacaccatc aatttcaact tcagtaactg cacaacccgg
     5941 catagatgaa agtaaaatgc ggcgaagtgc gttacctaat gtatggccaa aaccacgctc
     6001 taacggctct aatgtcactt tagcatgagt tgaactaact tgttcaatat ttactaagtg
     6061 cggctttaaa aattctgtca cagaaccctg cattttttcc tctctttgcg gttaagctaa
     6121 ctattattta gagtaaagct caacgatcag atgttcatta atatctgctg atagatcaga
     6181 acgctctgga cgacgtttaa atacgccttc cattttagtt gcatcaactt ctaaccaagt
     6241 tggtttttca cgttgagttg ctaattctaa tgatgcttta atacgtgctt gttttttcga
     6301 tttttcacga acagcaacaa catcatcaac agaaacttgg aatgaaggaa tgtttactac
     6361 acgaccgttt actacgattg atttatggct aacaagctga cgtgcttctg cacgtgttgc
     6421 tgcaaaaccc atacgataaa ctacgttatc taaacgacct tccaataata ctagtaagtt
     6481 ttcaccggta ttacctttta agcggttcgc ttctgtataa taattacgga attgacgctc
     6541 taagatacca taaatacggc gaactttttg tttttcacgt aattgactac catagtcaga
     6601 taaacgtggc ttgcgagcac catgttgacc aggcgctaca tcaagtctat ttctacattt
     6661 tgattcaatc gcacgaacgc ctgattttaa gaataaatca gtaccttcac gacggcttag
     6721 cttgagctta ggacccaaat atcttgccat tttctttctc caattctttt aacgtcaatt
     6781 aaacacgacg ttttttcggt ggacgacaac cgttatgtgg aatcggagtc acatcagtaa
     6841 tattcgtgat acggaaacct gctgcattta atgcacggat tgttgactca cgacctggac
     6901 ccggtccttt aaccataact tccaaattct ttaaaccaaa ctctttaacc atttctgcac
     6961 aacgctctgc agcaacttga gcagcgaatg gagtcgattt acgagaacca cggaaacctg
     7021 aaccacctgc agttgcccaa gctagagcat taccttgacg gtcagtaata gtaacgattg
     7081 tgttattgaa agatgcgtgg atatgagcta cgccatctgc aatctgtttt tttacgcgct
     7141 tacgtgcgcg aactggtgtt ttagccatta tttatctact ccgactattt tttgatcggt
     7201 ttgcgtggac ctttacgggt acgcgcatta gtcttagtac gttgaccacg taccggtaaa
     7261 ctacgacgat gacgtaaacc acggtagcaa cctaagtcta aaagacgttt gatgcttaaa
     7321 gttacttcac gacgtaaatc cccttcgaca gtaaatttac caacttcttc acgcagtttt
     7381 tcaatctgct cttcagacaa ttctctgatc tttacatctt cagcaatacc cgttgcagca
     7441 cagatggctt ttgcacgagt tttaccgata ccgtaaattg cagttaatgc gattacagtg
     7501 tgtttttgat caggaatgtt aatgcctgca atacgggcca ctatgcactc ctattattta
     7561 agtttattga tatactgatc ttgaaaagcc cgtttcagga tactcaaaca gtatatcagg
     7621 acgaatgagc tgagcagtat aactgctcag cgggttcttt gcaagaaata tgcgtaaatt
     7681 aaccttgacg ttgtttgtgt ttaggatcgc tacaaattac acgaaccaca ccttcacgtt
     7741 tgattacttt acaattacgg cacattcttt ttactgaagc acgaactttc attgcttatc
     7801 ctttattaac ggcctattaa tttagacctt ttaagttagc tttcttcaac acagaatcat
     7861 attgttgaga cattaaatga ctctgaacct gtgcgatgaa atccataata acaaccacta
     7921 caatcaataa tgatgtacca cctaattgga atggcacctt ccataacgac gtaatgatgt
     7981 aaggaaccaa acaaacaaaa gcaatatata acgcaccaat taaggttaaa cgtgtcatta
     8041 ctttatcgat ataacgagat gtttgttcgc ctggtcggta acctggtaca aacgcacctg
     8101 atttcttaag attatccgct gtatcacgag gattatactg cattcctgta taaaagaaag
     8161 caaagaaaat cactgccatt gtgaataata caacatacag tggttgacct ggctgtaata
     8221 gttgtgaaag gttaaataac cactcaaatc cttcgctttg accaaaccat tgagtaatgc
     8281 ttgccgggaa taaaataata cttgaagcaa aaattgccgg tattacccct gccatattca
     8341 cttttaatgg taagtgagaa gttcttgcag gcgccatcat tcgaccttgt tggcgacttg
     8401 catagtttac aactattctt ctttgtccac gttcaacaaa aacaacaaaa taagttactg
     8461 caaatgcaat tattgcaact agtagtaaga cgataaatga taactcgcct tgacgggctt
     8521 gttctattgt ctgccctatc gttgctggaa gatctgcaac aatacctgta aaaataatca
     8581 atgagatacc gtttccgata ccacgctcag tgatttgttc gcctagccac attaggaaca
     8641 ttgttcctgt cactaagctt actacagagg ttacatagaa taatatactt ggattaggaa
     8701 ctaatccatg taccatattc ggtagggcta gtgaaatacc aatagattga ataaatgcta
     8761 ataacagtgt gccatagcgt gtatatttac tgattttccg acgacctgct tcaccttctt
     8821 tctttaattc agctagaggt gggtgaatcg ctgtcaataa ttggataata attgacgctg
     8881 aaatataagg cataatacct agtgcaaata tagatgcacg gcttaaagca ccaccagaga
     8941 acatattaaa catatcaatg atggtgcctt gctgttgtcg aattaattcg gataatacag
     9001 aagcatcaat gccaggaaca ggtataaaag aaccgatacg gaaaacgatt aacgcaccta
     9061 aaacaaacaa tagtcttgat ttaagctcgc cagtcccttt ttgtgtacta ccttggtacc
     9121 ctggttgctt tgccatcttt attcctcgat agaaccgcca gcagcttcaa tagcagcttt
     9181 agcgccttta gttacacgta agcctttaac aactactgct ctttcaattt tgcctgctaa
     9241 aattacttta gcagataaaa tatctttagt aatgatgttt gctgctttta atgtctctaa
     9301 agttacttcg ttgccatcta ctttagctaa gtcgtttaaa cgaatttcag ccacatggaa
     9361 tgattttaat gaagtaaaac caaattttgg caaacgacga tataaaggca tttgaccacc
     9421 ctcgaaacca cgacgaacac cgccgcctgt acgagatttt tgacctttat gaccgcgccc
     9481 accagtttta cctaaaccag aaccaatacc acgacctaga cgttttgcac tgtgcttagc
     9541 accttcagct ggagaaagag aatttaaacg cattctatta ctcctctact ttaaccatat
     9601 aagacacttg attgatcata ccacgcactg ctggtgtatc ttcaagttct acagtatgac
     9661 gaatatgacg aagacctaag ccttttaacg ttgctttatg tttcggtaaa cgagcgatag
     9721 agctacgagt ttgagttact ttaatttttg ccatatccaa ttaccccaaa atttcttcaa
     9781 ctgttttgcc acgttttgca gcaaccattt caggtgattt catgttctca agtgcatcga
     9841 ttgttgcacg aacaacgtta attgggttag ttgaaccata cgctttagaa agaacgttac
     9901 gaacacccgc aacttctaat actgcacgca ttgcaccacc agcgatgata cctgtacctt
     9961 cacttgctgg ttgcataaat acgcgtgaac ctgtatgtga acctttaact ggatgttgta
    10021 atgtaccttc atttaaagct acattaatca tattgcgacg agctttttcc atcgcttttt
    10081 ggattgctgc tggaacttca cgtgctttac cgtgaccaaa acctacacga ccgttaccat
    10141 cgcccactac tgttaaagca gtgaaactca taatacgacc accttttacg gtttttgaaa
    10201 cacggttaac cgcgattagc ttttcctgca gttcaccagc ttgtttttcg atgtttgaca
    10261 tctcaaattc ctctattaga actgtagacc agcttcacga gcagcatctg ctaatgattg
    10321 cacacgaccg tggtatttaa aaccagaacg gtcaaaagca accgctttaa tacctttggc
    10381 aattgcacgc tcagcaacga ttttacccac tactgctgcg gcttctttat tgccggtata
    10441 tttaacttgc tctttaatta ctttttcaac agttgaagct gctgctagta cttctgagcc
    10501 attaggtgca atcacctgcg catagatatg gcgaggtgtg cgatgcacaa ctaaacgtgt
    10561 tgcaccttgc tctctcatta aatgacgtgc acggcttgca cgacggatac gagctacttt
    10621 cttatccata gtgttacctt actttacttt ttcttcgctt cttttgtacg cactacttca
    10681 tcagagtaac gtacaccttt acctttataa ggttcaggtt tgcgatatgc acgaatatct
    10741 gctgccactt gaccaattaa ctgtttgtca gcacttttca gaataatttc tgtttgtgat
    10801 ggacattcac cagttacgcc tgctggcaac gtgtgttcta ctgggtgaga gaaacctaaa
    10861 cttaaagcaa cagcattgcc tttcatttgt gctctataac caacacccac taattgcaat
    10921 ttcttagtaa agccttcagt aaccccgatt accatattat ttactagtgc acgagcagta
    10981 cctgcttgag catctgcatt agcgatacct tcacgtggag cgaaagttaa tgcatctgct
    11041 tcttgtttta cttcaactgc attgtgaatt tcacgagata actcgccgtt tttaccttta
    11101 actgttaata gctgaccgtt aagttttacc tcaacaccgg caggaatatt aacaggtgct
    11161 tttgcaacac gagacatttt tcctacctct ctattatgct acgtaacaga taatttcacc
    11221 gccgaggccc gcttgacgcg cagcacggtc ggtcattaca cctttagatg tagaaacaac
    11281 tgcgatacct aaaccaccca ttacttttgg taattcgtct ttgcgtttat aaatacgcag
    11341 acccggacgg ctcacacgtt ggatactttc tacaaccggt ttgttttgga aatattttaa
    11401 agtaatttcc agttcaggtt taacaccttc aacaacttta acgctttcga tataaccttc
    11461 ttcagctaaa acatttgcaa tagcaacttt taacttagat gaaggcatac tgattgcaac
    11521 tttgttcgca gcttgaccgt tacgaatacg ggtcagcata tctgcgattg gatcttgcat
    11581 gctcatgtat ttactcccat gattccaaat taaaagaggt tattaccagc ttgccttctt
    11641 aagacccgga atttcaccgc gcatagcagc ttcacgaacc ttaatacggc ttaaaccaaa
    11701 cttacgaagt acgccatgtg gacgaccagt ttggcggcaa cgattacgct gacggattgg
    11761 gctagaatca cgaggaagtg tttgtaattt taacactgct gcccaacggt cttcatcaga
    11821 tgcattcaca tcagagatga ttttctttaa ttcttcacgt tttgcgtaga atttatcagc
    11881 taatttagca cgttttacat cgcgtgcgat cattgattgt tttgccacga taacctacct
    11941 tatttacgga atgggaaatt gaaagcagct aataaagctt gaccttcttc atcagttttc
    12001 gctgaggtgg tgatagtaat atctaaacca cgaacacgat ctactttatc gtagtcgatt
    12061 tcagggaaaa tgatttgttc acgaacaccc atactgtaat taccacgacc atcgaatgac
    12121 ttagcgttta aaccgcggaa gtcacgaata cgtggaacag cgatagtaat caatctttca
    12181 aagaattccc acatacgttc accacgtagg gttactttgc aaccgattgg atacccttga
    12241 cggattttaa agcctgcaac agatttgcga gctttagtta ctaaaggttt ttgaccgctg
    12301 attgctgcta aatccgctac tgcgttatct aacagttttt tgtcggtcaa tgcttcaccc
    12361 acacccatgt taagggtaat cttttcgatt cgtgggactt gcatgacaga tgagtagttg
    12421 aattttgctt ttaattcatt aactactgta tctctgtagt aatcatgcag tttcgccatc
    12481 acattactcc agttaattaa attgttttct cgttagattt gaagaaacgc acttttttgc
    12541 catcttcgaa tctaaatcct acacggtcag ctttgttggt ttcagggttg aagatcgcaa
    12601 cgtttgaaac atcgattgca gcttctttct tcactaaacc accagctttg cctaatgcag
    12661 gaactggttt ttcgtgttta gtgatgatgt tgataccctc aacaaaaact ttaccatttg
    12721 gtaacacttt agttacctta ccacgtttgc ccttatcttt accggtaaga acaattactt
    12781 catcgttttg acggattttt gcagccatta cattctcctt atagtacttc tggagctaaa
    12841 gagatgattt tcataaactt ctcagaacga agttcacgag tcaccggtcc aaaaatacga
    12901 gtaccgattg gttgctcagt gttattgttt aaaattacac aagcattgcc atcgaaacga
    12961 ataactgcgc catctgggcg acgaacaccc ttcttggtgc gcacaacaac tgcttttaac
    13021 acatcacctt ttttcacttt accgcgtgga attgcttctt ttacagtaac tttaatgata
    13081 tcgccaatag cagcgtaacg acggtgcgat ccacctagaa ccttgataca cattacgcta
    13141 cgagcccctg agttatcagc aacatccagc atagtctgtt cttggatcat attagtgctc
    13201 cgttaaaata aaaaaacacc ctttcgggac gaacctattt atacaaatat aaatagggtg
    13261 caaaatatac tacaaaaacc actagttaat caagtgaatt tttaagctaa tttaatagtt
    13321 taagtaagct tatttataaa ttgtttcaac tatcaataaa ctgtcctata actcatataa
    13381 aaaccccaag atatcttggg gtttaactaa cattactcta cagtcaccgc ttttgcaagg
    13441 ttacgaggtt ggtcaacgtc cgttcctttg attaaggcaa tgtgatatga aagtagttgt
    13501 aacggcacgg tgtagaaaat cggtgcggtt acttcatcaa ctttcggcat tacaatcgtt
    13561 ttgaagcctt ctgcttcttc aaaacctgca tcgtgatcgg caaacacata taactgaccg
    13621 cctcttgcac gcacttcttc aatattggat ttcactttct caagcaagtc attttccggt
    13681 gctaccacca ctaccggcat atcgctatca attaatgcta acgggccgtg ttttaactcg
    13741 cctgcggcat aagcttctgc gtgaatatat gaaatctctt ttaatttcaa tgcagattcc
    13801 atcgcaaccg ggtaatattc tccacgacct aagaacaatg tgtggtgttt atccgcaaaa
    13861 tcttccgata atttttcgat ttgtttatcg aacactaacg cactttcaat ttgtgctggt
    13921 aagcgttgta aagattgcac gatatggtgt tcttgctctt cactcattct gccttgtaag
    13981 cgtccaatcg ccacatttaa taacaataag caagttaatt gagtagtgaa tgctttggtt
    14041 gatgctacac caatttcaac accagctttg gttaagaatg caaaatcgga ttcacgcact
    14101 aatgaagaac ttgccacatt acacaccgtc attgccgcca tatagccaga ttctttcgct
    14161 aaacgcagtg cagctaacgt atctgcggtt tcacctgatt gtgaaagcgt gattaataag
    14221 ctgttcgggc gagtaacgaa tttacggtaa cggaattcgg aggcaatttc cacatcacag
    14281 ctcacgcctg caatggattc aaaccaataa cgtgaaacca taccagcatt gtaagaggtt
    14341 ccacaagcca caatttgcac gtgttctact ttcgataaaa tctctgccgc attcggtgca
    14401 atggctgaaa tatctacttt accgtctttg atacgaccat ctaaggtatt cataatcgca
    14461 accggctgct caaaaatctc tttttgcata tagtgacgat attgtccttt atctgccgcg
    14521 tctgcctcaa aattgccttc gtgaatttca cgctctgcct tgttgccttc acggtcataa
    14581 atatccactg tgcgacgggt aatttcggct acatcacctt cttctagata agcaaaacgg
    14641 cgagttacgc ttaataatgc aagtgggtct gaagcaagga agttctcgcc tacaccgtaa
    14701 ccaatcacta acgggctacc tgagcgagcc acaattaaat gctccggctc ttcttcattt
    14761 aataccactg tgccgtaagc accacgcagt tgcaccacgg ttttttgtac cgcttccaat
    14821 aatgaagaag cagaacgcaa ttcccattca actaaatgag caatgacttc ggtatcggtt
    14881 tgagattgga acacataacc acgctcttgt aacactattt ttaactcttc gtagttttcg
    14941 ataatcccgt tatgaactac tgcaattttg ccactgcggt gtgggtgagc attagtttct
    15001 gacggctcgc cgtgcgttgc ccagcgagtg tgtgcgatcc cagtgccgcc taatagtggc
    15061 ttagtgtcta acgcctcatc taaggctttg actttaccga cacggcgtac aatttgcatt
    15121 gttttatcat ctgcatttaa tactgctaca ccagcagagt catatccacg gtattctaag
    15181 cgatgtaaac catcaaccaa gatttctgcg atatcacgtt gtgctactgc acctacaatt
    15241 ccacacataa atttgctttc ctatgtttaa gtttaaaaat tcatttgagc tactgctatt
    15301 ttgcaataac cacttcgaca cccatttttt cgatttgttc tttcgtttca aaacttaatt
    15361 gactgtcggt aataattttg gtaatatttt gccatttcaa ttcaatattc ggcattttcc
    15421 gaccgatttt ttgcgattca attaacacaa tcacttcacg gctcacttct gccatcacct
    15481 gacttaagcc aactaattca ttaaaggtag tcgtgcctcg agccaaatct aaaccgtccg
    15541 caccaataaa aagctgatcg aaatcatatg aacgcaatac ctgttctgct actttgcctt
    15601 gaaaggactc agaacggcta tcccaagtgc cgccggtcat caacactgtt ggttcgcatt
    15661 cgagggaagt caattccgtc gctaaattca gcgaatttgt catcaccacc aagccggttt
    15721 ggttcaatgc ttttaccaaa gctccggtcg tgctgccgct gtcaataatg atgcgattat
    15781 gatcacgaat acaatcacgt gcggcttgag caatcatttt cttttgaatc gaaagttgct
    15841 caataaacgc ttcttccatc atttccgatg gaatttttac cgccccacca tacttacgca
    15901 ataaaaaacc actttcttcc aaagcggtta aatcttttct aatcgtaact tcagacgtct
    15961 caaagaaatg agcgagttca tctacactca cttcattttt ctcttgtacc atttgaacaa
    16021 ttaaatggcg gcgttgttgc gtgttacgtt ttgacattat aatcttcact taaatttcgt
    16081 ttcaaaactt ttgcattata aagaaagctc gcgaaaagaa aagcagaaaa tgcaaaattt
    16141 acaaaatcta tacaaaataa aaccgcttgt aatattgatt tacaagcggt tgatttcttg
    16201 aaattttttg caattatttg atttggctac caatcacgcc accaagtgcg gcaccaccta
    16261 aagttgcacc ggtagattca ccaatcgcgt gaccagccac accgccaatt gctgcaccga
    16321 ttgcagtatt acgttgcgtt tttgtcatat tgttacagcc agacacagca accattaata
    16381 ccattgcacc aacaactttc aaaatagatt tcataataat ccctcataat taatcaattt
    16441 caaataagcc aatattcttg gctatgctat aagatttaat ttatttagaa aggttcaact
    16501 actaccacct atgaattgca aattttttca caatttaggc cgcttgttga ttgaactgtg
    16561 agcttgctca cagaatttta tggtatttct tgctatattg tatagcaatc tatgcgataa
    16621 ctcattaagg aaataaaaat gaaattaaaa aaattatctt tagcactctc gactttatta
    16681 ctcggttcag cctttgccaa ctctgcttta gcggaaggtc gtttaaccgt ttattgtagt
    16741 gccactaatg aactttgtga gcaagaagtg caagcattcg gcaaaaaata taatgttaaa
    16801 gtagcatttg tgcgtaatgg ttcaggcagt acattggcga aaattgaagc ggagaaaaac
    16861 aatcctcaag ctgatgtatg gtatggcggt actttagatc cacattcaca agctgcagaa
    16921 atgggtttac tcgagccgta taaatcaccg aatctcgaac aaattatcga aaaattccgt
    16981 gatccggcaa aattaaaagg caactactct tcggctgtgt atatggggat tttaggttat
    17041 ggtgtgaatt tagaccgaat caaaaaactc ggcattgaaa aagtgcctag cacttgggaa
    17101 gacttgctcg acccacgcct agccggtgaa atccaaattg ccgacccaca aagctccggc
    17161 acggcttata ctgcgattgc gaccttcgta caacttttag gagaagaaaa agccttcgac
    17221 tatttccgca aattacacaa aaacatttca caatatacca aatccggcat cacaccggca
    17281 cgcaataccg cccgtggtga aaccgctatc ggtatcggtt tcttacacga ctatgcgatt
    17341 gagaagaaaa acggggctaa cattgaaatg accgcaccaa cagacggcac aggctacgaa
    17401 ttaggtggtg tgagtatcct caaaggtgca agaaatcttg ataatgcaaa actgttcgtg
    17461 gattggtcgc tttctaaaga agctcaagaa ctctcttggc aaaaaggcaa tgcgttccaa
    17521 gtattaacca acaccaccgc agaatcttcc ccttatgctc tagatccgaa aaacttaaac
    17581 ttaatcaact atgatttcga gaaatacggc tcgagcgaag agcgtaaacg cttgattgat
    17641 aagtgggtaa atgaagtaaa attagcgaaa tagtgttaat ctttccactg aggggataag
    17701 caattatccc ctctctaatt ataagaatct gtgaggtgtt atgcagaatt tttccttttc
    17761 ccgaccgctt gtttgggtgc ttatcgggtt actcggtttt ctcttgttac cgtctaaagc
    17821 cttagattat gggctgtttg actcaacctc tgatgaactg ctcgccgcaa tgggctgggc
    17881 gagtctgaac atcacttggg cgtggttttt accgcttttg gtatttttat tgccaaattc
    17941 gaccgcttgt aaaactagag ccaagctgga attagtaggg ctgggcgtgc tgttcgcctt
    18001 tattttcctg tcagcgattg tgctgaaaat cagcctcggt tatgcggtgt tgccgttgat
    18061 tattgccatt atggggcttg cgaccccaaa tttagcaacg ctcaaagtaa tgcagggtga
    18121 ccgctttatt atcggctcgt tactgagcat tattctgctg attttctttt ttattgtgta
    18181 tccgaccatc gccatttttg tgtcgatgtt ctacaacggc tcggaatttg tgccaagcca
    18241 agtgctgaca attttgcaac aaccttatgt cgttcgagtc atcggtaact cgctctcggt
    18301 tgccggcacg gtgggcgttc tctccaccct attcggctta gcctttgctc tctacaccac
    18361 tcggattgct aaacgctcgg cgtttatcgg gcggattttc tcgattttac ctatcgtcac
    18421 cccgccgttt gtggtcggtt taggcgtaac cctgatgctt gggcgttccg gctatgttac
    18481 tgaattttta gtggattact ttggctttgc caacaattgg ctgtacggtt tcaccggtat
    18541 tgtgatagcc cataccctcg cgctcacgcc aatgtcgttt atgattttgg aaggggcatt
    18601 gaaatccatt cacccatcgg tggaagaagc agcttacacc ctgcgttcca accgctatca
    18661 agcctttttt aacattattt tcccattgtt aaaaccggca ttggcaaact cctttttagt
    18721 ggtggcaatt caatccctcg ccgatttcag tacgccgtta gtattgggcg gtagctttga
    18781 tgtgattgca acccaaatct acttctacat tgccggttct caactggatt atgcctctgc
    18841 tagcacgctt ggggcaattt tgttggtgtt ctccttagcc attttcgtga tccaatacct
    18901 ctggatcggc aatcgctctt atgtgacggt gtccggcaaa tcctatcggg gtgatgtcca
    18961 agacttacca agcggtatga aatggctgat tatttgcacc ttattgttct ggggaacctt
    19021 caacttagtg ctgtacggca gtattttcta cggcagtttc accgtgaact ggggtgtgga
    19081 ttatacctta acccttgata actacatcaa gctattcggg caagggttta gcgatggcgg
    19141 tttcccttcg ttaattcaaa ccgtgatttt cgctgccgct gccgccccga ttactgcact
    19201 attcggcttg ctgatcgcct atgtgacagt tcggcgtgat ttcaaaggca agaaaaccct
    19261 ggaattttta accctgctct gctttgccgt accgggaacg gtggcaggtg tttcttacat
    19321 tctcgccttt aacgatgccc cgatttacct aaccggcacc ggtatgatca tcattctctc
    19381 aatggtaatg cggaatatgc ctgtgggtat gcgagcggca attgccggct tagggcagtt
    19441 ggataaatcg ctggacgaag cctcgctctc gctgaaagcc ggttcgttca aaacgatgct
    19501 gtttgtggtg ttaccgctac tcaaaccggc actgctctcc gccctcgtca ccagctttgt
    19561 gcgggcaatg acgactgtca gtgcgattgt attcttagtc accgccgaca ctcgtgtggc
    19621 aacctcctac attctcaacc gtgtggaaga cggtgaatac ggcattgcga ttgcctacgg
    19681 ctcaatttta attgtggtga tgatggcgat tatcctgatt tttgactgga ttgtcggcga
    19741 cacccgtatc gcccgttcta aggcgaaaaa aatgtaaaaa gacatctact ctctcccttt
    19801 atgggagaga gacagaaaaa tacttcgttc agaagtattt ttcagagaga gggatataat
    19861 taaaaggaca atatatgaac aacgatttct tagtattaaa aaacgtcacc aaatctttcg
    19921 gcaaggtgac ggtcattgat aatctcaacc tcagtattcc gcaaggtaaa atggtgacat
    19981 tactcgggcc gtccggctgt ggtaaaacca ccgtactgcg tttagtggca gggctggaaa
    20041 acccgacttc ggggcaaatt tttattgatg gcgaagatgt tacccaaagt tcgatccaac
    20101 accgtgatat ttgcattgtg ttccaatctt atgcgttatt tccgcatatg tcgattggcg
    20161 ataatgtcgg ctacggcttg aaaatgcagg gcgtaccgaa agaagaacgg ctgcaacgag
    20221 tgaaagaggc gttggaattg gtggatttag gcggctttga agatcgcttt gtcgatcaaa
    20281 tctctggcgg acaacaacaa cgtgtcgccc tcgcccgtgc cttaattctg aaaccgaaag
    20341 tgctactgtt cgatgaaccg ctgagtaacc ttgacgctaa cttacgccgt tcaatgcggg
    20401 agaaaatccg tgaattacag caacgtttaa acattacttc cctttatgtg actcacgatc
    20461 agtccgaagc ctttgcggtt tcagatgaag taattgtgat gaacaaggga aaaattatgc
    20521 aaaaagctcc agccaaagag ttataccttc gccctaattc tttattctta gcaaatttta
    20581 tgggtgaaag cagcattttt gaaggcacga tagctggcaa ccaaattaat ataaatggat
    20641 atcaatttac gttagcaaat gctgaacaat ttgagttacc cgatggggaa tacttagttg
    20701 gcattcgtcc agaagctatt catttagctg aacaaggaaa tataagtcaa ctctgtaaaa
    20761 ttaaaaatgc agtttatatg ggaaatcatt gggaaattat agctgaatgg gaagggaaag
    20821 atttattagt caatactaaa cctgaaaatt tttaccctca tatcaaacag gcctatgtac
    20881 attttatcga acaaggtgtt tttcttttaa agaaagagct ataacgaatt tatactaaat
    20941 taagaggaag gtagttataa ctatttagca attttgagaa aaataggccg catgcaaaat
    21001 ctcttgatga caagcggtct tttctcgccg a
//
LOCUS       DANMGB010000025        20602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.025, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000025 DANMGB010000000
VERSION     DANMGB010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.025"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..331)
                     /locus_tag="PXG19_000694"
     CDS             complement(<1..331)
                     /locus_tag="PXG19_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6066018.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEA"
     gene            534..1988
                     /locus_tag="PXG19_000695"
     CDS             534..1988
                     /locus_tag="PXG19_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL6066019.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2063..3352)
                     /locus_tag="PXG19_000696"
     CDS             complement(2063..3352)
                     /locus_tag="PXG19_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6066020.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(3556..3891)
                     /locus_tag="PXG19_000697"
     CDS             complement(3556..3891)
                     /locus_tag="PXG19_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL6066021.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(3881..4315)
                     /locus_tag="PXG19_000698"
     CDS             complement(3881..4315)
                     /locus_tag="PXG19_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL6066022.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(4370..5425)
                     /gene="modC"
                     /locus_tag="PXG19_000699"
     CDS             complement(4370..5425)
                     /gene="modC"
                     /locus_tag="PXG19_000699"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL6066023.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            complement(5412..6104)
                     /gene="modB"
                     /locus_tag="PXG19_000700"
     CDS             complement(5412..6104)
                     /gene="modB"
                     /locus_tag="PXG19_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL6066024.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(6288..7043)
                     /gene="modA"
                     /locus_tag="PXG19_000701"
     CDS             complement(6288..7043)
                     /gene="modA"
                     /locus_tag="PXG19_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6066025.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(7064..7825)
                     /locus_tag="PXG19_000702"
     CDS             complement(7064..7825)
                     /locus_tag="PXG19_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066026.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(7827..8735)
                     /locus_tag="PXG19_000703"
     CDS             complement(7827..8735)
                     /locus_tag="PXG19_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066027.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(8741..10798)
                     /gene="dnaX"
                     /locus_tag="PXG19_000704"
     CDS             complement(8741..10798)
                     /gene="dnaX"
                     /locus_tag="PXG19_000704"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL6066028.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(10889..11428)
                     /gene="apt"
                     /locus_tag="PXG19_000705"
     CDS             complement(10889..11428)
                     /gene="apt"
                     /locus_tag="PXG19_000705"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL6066029.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            complement(11556..12506)
                     /gene="lpxM"
                     /locus_tag="PXG19_000706"
                     /gene_synonym="msbB"
     CDS             complement(11556..12506)
                     /gene="lpxM"
                     /locus_tag="PXG19_000706"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL6066030.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(12947..13630)
                     /locus_tag="PXG19_000707"
     CDS             complement(12947..13630)
                     /locus_tag="PXG19_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL6066031.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(13639..14271)
                     /gene="rsxG"
                     /locus_tag="PXG19_000708"
     CDS             complement(13639..14271)
                     /gene="rsxG"
                     /locus_tag="PXG19_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL6066032.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(14271..15326)
                     /gene="rsxD"
                     /locus_tag="PXG19_000709"
     CDS             complement(14271..15326)
                     /gene="rsxD"
                     /locus_tag="PXG19_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL6066033.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(15372..16007)
                     /locus_tag="PXG19_000710"
     CDS             complement(15372..16007)
                     /locus_tag="PXG19_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL6066034.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(16000..18294)
                     /gene="rsxC"
                     /locus_tag="PXG19_000711"
     CDS             complement(16000..18294)
                     /gene="rsxC"
                     /locus_tag="PXG19_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL6066035.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(18281..18898)
                     /gene="rsxB"
                     /locus_tag="PXG19_000712"
     CDS             complement(18281..18898)
                     /gene="rsxB"
                     /locus_tag="PXG19_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL6066036.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(18898..19479)
                     /gene="rsxA"
                     /locus_tag="PXG19_000713"
     CDS             complement(18898..19479)
                     /gene="rsxA"
                     /locus_tag="PXG19_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL6066037.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLKPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
     gene            complement(19794..20279)
                     /locus_tag="PXG19_000714"
     CDS             complement(19794..20279)
                     /locus_tag="PXG19_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066038.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQTLSAASHNELKINRGY
                     KFKEKMLDEFYNLIELSEKDDEEYSEEEVKLPLWKKIYYVFIIFGIIMFIYRVINWLL
                     F"
     gene            complement(20307..>20602)
                     /locus_tag="PXG19_000715"
     CDS             complement(20307..>20602)
                     /locus_tag="PXG19_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066039.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
BASE COUNT         5860 a         4653 c         4260 g         5829 t
ORIGIN      
        1 ctgcttcggc tttttctttc gctgcttttt ccgccgctaa acgttccgct tcggcttttt
       61 ctttcgctgc tttttccgcc gctaaacgtt ctgcttccgc tttctcttta gctgcttttt
      121 ctgctgctaa acgttctgct tctgctttct ctttcgctgc cttgtctttt gctgcttttt
      181 ctgctgccgc tttatcggtt tgttgctgag tagtttgcgg tttagtattc ggttttgcca
      241 cattgtttga gctactgccc gaaccaccac tactacacgc cgttaaaccc aataaaatca
      301 aactggctaa agttactttt ttgatagaca taaaatgttc cttttgtaag ataaacaaaa
      361 atagatgtgt ataaaacaca cgcatattgt acaaaaaaaa aacaactcgt catcaagtac
      421 tttttaagat ttttttgtta aatttctcct aaatattcta caatgtcaga ggtctatatc
      481 agcttgaata caagcggtta ttttttctta aaattttaca aaaggggctt attatgtctg
      541 aaatctcaac gctcgcaccg cagctacttt ggcagtggtt tgataaagcc tgtgctattc
      601 cgcacccgtc ttaccacgaa aatgaactgg ctgaatttat tgtgaattgg gcaaaatcga
      661 aaaatttctt tgttgaacgt gatgaagtgg gtaatgtgtt aatccgtaaa ccggcaacta
      721 aaggtatgga aaaccgccaa actgtcgctc tgcaagccca tcttgatatg gtgccacaag
      781 ccaataccgg cacggttcac gatttcacta aagatccgat tcagccttat attgacggcg
      841 aatgggtaaa agccaaaggc acaacattgg gggcagataa cggcattgga ttggcttcgt
      901 gcttggcggt gttggatagc gatgatttag cccacccaac cattgaagtg ttgctcacaa
      961 tgaccgaaga agccggtatg gaaggggcga ttggtttacg cccgaactgg ctaaccgccg
     1021 atattatgat taacaccgac accgaagaaa acggggaaat ttacatcggc tgtgcaggtg
     1081 gggaaaatgt gaatgtgaca ctgccaattt tcttggtgcc tcatcagcaa gatagtgcag
     1141 taaccgttac gcttaaaggc ctaaacggcg ggcattcggg ctgtgatatt cacaccaccc
     1201 gagcgaatgc gattaaagtg ttcgcccgca ttttggaaca agcccacaac gaagtggaat
     1261 tccaaattgc agaaattcaa ggcggttcgg tgcggaatgc cattccacga gaagcccacg
     1321 caaccttggt tttctctgca aaaaatcagc aaaaattaac cgcttgttta agccaaaccg
     1381 ccgaacaagt aaaagcagaa ctcaaaattg ccgagccaaa cttccaattt ttaattgaag
     1441 aagctcaact gcctgagcaa gcctttgacc ttgccagcac tgctcgagta atccatttct
     1501 taaatgtgat gccaaatggt gtggtgcgta atagcgatgt ggtggaaaat gtggtggaaa
     1561 cctcactcag tattggtgtg cttaacaccg aagcgagtga ggtgaaagcg accattcttg
     1621 cccgctcatt aattgagggc ggaaaagagg aaattcgcag taaaatccgc tcattaaccg
     1681 cattagtggg agcagaagtg gaattttcgg gcaactaccc gggctgggag ccaaacccaa
     1741 attccaaaat cacgccatta accaaagcga tttatgatga aattttaggt tatgaatctc
     1801 aaattaaagt gattcacgca gggctagaat gtggcttaat caacaaaatc tacccgaata
     1861 tggattttgt ctcgattgga ccaactattc tcaacgccca ttctccggac gaaaaagtgc
     1921 atattccggc agtggagatt tattggaaac tcctaaccaa actacttgaa caagcacctg
     1981 agaaataaat ttaatcaaaa aaattatata atcttgcccc gtaattaatt gaataaaacc
     2041 tcaattaatt acggggtagc tcttattttc tctgttttaa aaaatgtacc gtgaaagcag
     2101 caattaataa gacgactgct gcacctaaat aaagctcgtt ctttttccag ccggcgtcta
     2161 ataaaatacc tgcaagagtt ggggaaacaa ttgagcctaa acgccctaca ccgatggcgg
     2221 tgcctacgcc cgtgctgcgg aaatccggtg cgtatagggt tgggttaatg gtataaagcc
     2281 cggtaatgca gccgttaatt aatccgccaa ccaaaatggc tagtgttatc gcaagcccta
     2341 aattgccggc aaacacaaag gcaaccacag cagatgcagc cagaatactg aatgcctgca
     2401 aaatatgttt tgccgcccag cgactgacta aaaagccgaa aattaacgag ccgattgtac
     2461 caccaactga aattgccatt cccacagttt ggctttgggt tttaggcatt ccggcttctt
     2521 ctaatagtgc cggagtccaa gagctgataa agtaaaatga ggctgaaatt gcaataaagg
     2581 caagccaaat tagcaacgta ttgcggcgat attcaggctc gaataaacgg gtaattgcca
     2641 ctttgctttt actttttgcc tcaatttcag gaagttccca gccgtttcct aagcctaatt
     2701 taacggcaat ttgatttaaa cgagctttag cattcaccgg gtgttttgaa attaaaaatt
     2761 ccaccgattc gggcaataca aagaataata aaacgaatac cgcaccggtt aaaatcgacc
     2821 caacgaggaa aaccgcacgc cagccatatt ctccttgcaa taacaccgca gacattccgc
     2881 ccagcattgc accaatccca aagcctgagg cataaattgc aatcgctaag ccacgccatt
     2941 tttggctgga gtattcactc actagcacat tagtgccggt taaaatggcg gctacgccta
     3001 aaccggttaa aacacgccat acaccaattt caaacgcaga agtagcgaaa taagttagga
     3061 gcattcctaa cgtggctaag cctgtgccga ttaaaagcaa cgggcggcga ccaaatttat
     3121 cagcaagtgg tgaaagaaag agtgagccta tcgccatacc gaataaaccg gcactcatta
     3181 agctgccgat ggctgcaccg tctaactgca attcttctcg gatgcttttg gcggtaaagg
     3241 cgagtgccat taaatcaaag ccgtccagca tattaagtaa caccgtaagc ccaaccacta
     3301 accattggaa tgaagtcatt ttgttatgag caattttttg acgaatatcc ataagctccc
     3361 tctgcatcaa aattgataaa attttattta gagtgaacta tagaaagttg attaaatata
     3421 atcaaactca aaatttacat aaaatttatg aaagattttc atatttaatc aaaggaggga
     3481 atttatagca ggaatggcga gggagaaaat agatagggcg aataattatt cacccctaga
     3541 ttgaatagga gaaagctatt tcttctccgc ttgctcagcc gctcttttgc gtctgatttc
     3601 tttcggatca gcaattaacg ggcgatagat ctcaattctg tcgccttctt ccaccgtttc
     3661 attcagtttt gccgggcggc taaaaatacc gactttgttt tcacgcaagt caatttcggt
     3721 atatttttcc aacacgccgg agagcaaaat aatagtttga atggtcgcgt tttgcggtac
     3781 ttgcagtttt ttcagaaaat atttatcagg gtaagcataa agcacctcaa cattaatttt
     3841 ctgttcttca cttttttgtt cttctggatt ttgacgttgt tcagacacca tacacctctt
     3901 ttgcacgttg tttgaaagca tttaccattt ttaaagttaa ttcgttgaac accttgccga
     3961 acaccattgc tacaattggg ctggaaaatt caaaatttaa ttgcagggca attttgcaac
     4021 tttgctcatc aaagggggtg aatgtccaag ctccgtgtaa atggcggaaa ggcccttcaa
     4081 ttaatgccat ctcgatttta tagggcggcg tcattttatt gtgggtactg aaagtttggc
     4141 taatgcctaa tttctgaatg tgtaactctg cctttaattc attttcgccg gtgctaaggg
     4201 ttttggtact cacgcagccg gataaaaatt cggggtattt ttcatactga ttaacaagtt
     4261 gatacatttg ctcggcacta taaggcacga gggcagattg attaacgatt ggcataatgt
     4321 ctcttttggg aattaacaag cggtcatatt ttagcgtaaa tttgcaagcc tataaagaaa
     4381 cgcttttgat ttgaagatag acctcttgct ccggttgaat cgctaattca ttaaaagacc
     4441 aaaggctgat cgtactccaa atttgctgat tttcgacttg aattgccaga tcaacccgat
     4501 ctaaatgcgt ttctattttc cgaacattgc cttttaacac attacgaatt gagctttgag
     4561 tcggtttttg taagctgatt gaaacctctt tgctggcaat agttaccctt agcttctcgc
     4621 ctatttgatg gcgggggagt tggttcaccc ataatcgctg tgcgttcaag ctcaagccaa
     4681 gcatattata gtggggaagt gtttcttcca ccggtaattc aagcaggcta attcgctgat
     4741 gatttggctg ccaagcggaa aatgccgagc tgtgccaaac cgctgaaagg gtatcaaatg
     4801 cggttacttt gccgttttcc aacagcacaa gatgatctgc caatcgaact acttcctcta
     4861 aactgtggct gacatacaga atcggtattt caagccgagc ggataattta tctaaatagt
     4921 ccagtagctc ttgcttacga gggagatcga gggcagataa tggttcgtcc atcagcaaaa
     4981 tattcggtga gcttaataac gcccgcccaa tcgccacacg ttgtttttcg ccaccggaaa
     5041 ggcttgccgg atagcgatta agcaaagggg caatgcctaa cagttccaca atttgcaaaa
     5101 aatccgcaga atccgaccgc ttgtagccat attttaagtt tttttccacc gaataatgag
     5161 ggaaaaggcg atgctcttga aacacatagc caatgttgcg tttttcaggt ggtaaattga
     5221 tgccgttttg gctgtcaaac agcacctgac cgtttaattc gataaagccg gcttgagcgg
     5281 ttgaaagccc cgcaattaaa ttaatcaggc tggatttacc ggcaccggaa cgcccgaaaa
     5341 tagcggtgat tcctttattc ggcaaatcga gattgacatt gagcgtcaga ttgccgagtt
     5401 gctgaagaag tttaagtttg agcatagcgt ttttgccttt ctgccagcca ttccgaacag
     5461 aacagggcaa tgagtgaaat cagaatcgcc accaagcaca aacgggcggc agccatttcg
     5521 ccatcggggg tttcaataaa ggtgaaaagg gcggcaggaa tggtttgggt ttggttggga
     5581 atgttggaga caaaggtgat ggttgcccca aactccccca aagagcgggc aaaacccagc
     5641 acgccaccgg caataatgcc tgaaaaagag agcggtaaag tgagcgtgaa aaacactttt
     5701 aacggtattg ctccaagcgt tctggcggct tgctccaatt taggatcaac tgcctcaaag
     5761 gctaaacgga tagaacgcac cattagcgga aacgccatca ccattgaggc aagcactgct
     5821 cctttccacg aaaaactcaa gctgaaatga aaccattccc acaaatattg cccgattacc
     5881 cctcgtttcg ccatcgaaat aagcaataaa tagccaatga caaccggcgg taacaccaga
     5941 gggagatgca taataccatt gagcagattt tttccccaaa actgtttgcg ggcaagcagc
     6001 cacgccaccc acacggcaag cggtaatgca agcactacag caatggaggc aacttttagg
     6061 cttagaacaa tcgcattgag ttcttgtggg gtgaaattaa gcataatcta aaactatttg
     6121 gttataagct taccctcgcc ccttgtggga gagggataga tttttcttcg ttcagaagaa
     6181 aaatcaggga gagggggaat attttaaacg ctatttgccc tctctctgaa aaatatgtct
     6241 gaacgacata tttttctgtc tctctcccac aaggggagag agtaaattta atttacagga
     6301 taaaacccag ctgcctcaaa tttcgctttt gctttcgggg ttttgagaaa atctaaaaat
     6361 gtggcggcag aggctttttc actgactgcc gcagcagggt aaacaatttc gccgtagctt
     6421 tccggtggga aaacggcaac cactttgact ttattcgaca ctttagcatc ggtggaatag
     6481 acaatcccaa gtggggattc gcctcgctcg acaaaagaga gggcatctcg tacatttttt
     6541 gccctcgcta aacgaggttc aacactttcc cataattggt aatgactaag ggcttttttg
     6601 gcatatttgc cggcaggaac gtggtttggg tctcccaccg ataaatagct gtttgctaat
     6661 tctttggcaa aatcgaccgc ttgtatcgct tttggctcaa tgttactttc ggtaggtgca
     6721 attaatacta actcgtttct gactaaattg cggcgatgtt taactttctc aggttgtttt
     6781 tcggcaacat aatccatcca cttttggtcg gcggaaataa aaatatctgc cggtgcatct
     6841 tgctcaatct gctttgctaa taccgatgat gaagcgaagg agaacgtgat tttatcctgt
     6901 ggataggctt tttcaaaatc ctgctgaata tcttgtaaca catttgtcat tgaagcggca
     6961 gcaaacacgg taatctcttg tgaaaaggct gtgcctgata acgttaatgc cattgtaatt
     7021 gctagttttt ttaatgcttt cattttcata acctcacaat tagttaagaa cgcagcccaa
     7081 cccctcgttg aattaaggaa taggcaataa tatacaagcc gatgcaaagt gaagtaagca
     7141 ctgcaaaagt ataacctaac ggcacatcgc tgataccgag aaagccatat cttaagccgt
     7201 taatcatata aacgatcggg ttgaatttag acaccgtttg ccaaaattca ggcagtaatg
     7261 aaatagagta aaatacgccg cctaagtaag ttaagggagt aagcacaaag gttggaatca
     7321 gccccacatc atcaaaggag cgggcgaaca ccgcattaat tacgccacct aacgcaaagg
     7381 caatgattgt cagcaacagg gttaagacga taatcgcaac cgagtagatt tcaaacgaga
     7441 caaacaccat tgccacgcac attactaagg ttgcggctaa acctgcacgc aaaatactgc
     7501 cggtgacata accccaaata atattatggg tagagagtgg cgaaatcagc atctcttcaa
     7561 aatctcgggt aaatttactc aagaaaaatg aagaggcggt attcacataa gaggcggtga
     7621 tggcggtcat cataattaag ccgggtgcaa taaattgggt gtaacccacg ccattcattt
     7681 ccccgattcg cccaccaatc agcgtgccga agattaaaaa atagagcgtg gtagtaatca
     7741 ccggtggcac taaagtttgt cgccaaatcc gcaaaatgcg gcggcactct ttgtaagcta
     7801 aggtataaaa tccgattaaa ttcattttac tgagccatat tgataaatag ttcttccaag
     7861 cggtttgatt tgtttcgcat acttagcacc tcagcccctt gggcggaaat ttgcgaaaac
     7921 agattggtta gcccttgctg gcgttttaca ttcacttcaa gggtgttttc atcaagccat
     7981 ttatgcgggt aattttgaat cacaagcggt tgattttgct cagaattttg caaatctaac
     8041 acaaatacct cactttccaa tttggcaagc aaggctttca ttgaggtgtt ttcaattaat
     8101 tcgccgtgtt gaataatgcc gatgtgacgg catagggttt ccgcctcttc taaatagtgg
     8161 gtagtgagaa taatagttgt gccttgattg tttagatccc gcaagaaatc ccacaatgag
     8221 cggcggagtt caatatccac ccctgcggta ggttcatcta aaatcagtag ttttggattg
     8281 tgcattaagg ctcgggcaat catcacccga cgtttcattc caccagaaag ctcacgggtg
     8341 aggtgggtgc gtttttccca taggtcgagc aatttcagcc acttttcggc acgtactaag
     8401 gcttcactgc gaggaatgcc gtaaaacccg gcttgttgca ctagcacatc aatcactttt
     8461 tcaaactgat tgaaattaaa ctcttgtggc actaagccga tttgatgctt taattcgact
     8521 ttttgggtgt ctaaatcata gccaaacact ttcacgctgc cgctggtttt atttaccagt
     8581 gagctgataa tgccaatagt agtagattta cctgccccgt tatgcccaag tagggcatag
     8641 aaatcacctt gctcgaccac aagattaatg cctttaacgg cttttacacc tgttgggtag
     8701 gtttttacca aatcaattaa ttctaatgct ttcatttgtt ttactcagtt tccgccaccg
     8761 ctcgaatggt cgattcatca atttgtgcat caaaagcgtt gcgaagtaac attaattttt
     8821 catcgttaag cagagctgat tttgctgcct cagttaattg tttgaaaatg gctcgccgaa
     8881 tttcaagcgg agtttgctgt tcgctattgt caccaatggt caattcgtat gaatagcctt
     8941 tttcggcaag ggcagcttct aaatttttac gtgattccgg attatctaag tgagccatat
     9001 tcggctttaa caccaatgcg aggtgctgtt cattttgttc cgctaaatag ctatttaagg
     9061 cgatctgacg ggaaaatccg cctaaattga gtgagttggc gatgtcacac catttatcct
     9121 gctgacaaga taaatgaatg gtttttgcca ctaattcagg ggtgcgttct tgcaaaatcg
     9181 cttgtttaat atcagaaggt ttggcactgt ctgcttgatt ttctaattca ggattgagcc
     9241 acgtccagcg ataatcttca tcttccacac ttttaggggc ggattcggtt ttctttgaaa
     9301 cttgcagtac ggctttgtgc tgattttccg ccaagctgat aaaccgctct tgcaatgaag
     9361 cggtctgatt tgccgatttt tttgcaataa cttgaggggc ttttagctca ggcttttttt
     9421 tttcggtttg agctaaattt gcctgctgtg cttgtagctt tttgcgggct tcgagggctg
     9481 ccattgccgg tgaaagagtc gcaggagcag acggcgaaat agcggtatct actgcctgtg
     9541 gcggttgagc aatgctttca accgctgtgg tagtattggc aacagtaacc gttttttgct
     9601 gattttgctc aaaattttct cttagctggc taatttgatt ttgtggtttt gctgtcgtaa
     9661 ccgctgaaac cgaatggttt ggttgtgtaa ccttttccac tgcaactgtt gctatttttt
     9721 ctgcctgttt agggtggaaa gccaacgcac gcaaaatcgc catttcaaca ccggcacgtt
     9781 gctccggtgc aaaaggcaac tcttttttac tgttgaggat taattgatag aaaaattgca
     9841 cgtcttcggg cggaatttgt tttgccagaa aatgcactaa tgtttcttcg gttgtaggtg
     9901 ttttcactaa ttgcaacatt gcaattttgt gtaacacttc tgccacatcg cttaataatt
     9961 gttgccaatc aacgcctttc gctgcaattt gctcgatgat cgccattgct ttttcaccgt
    10021 cggcttgggc ggttgcttgc actaattcta gtggttgatt atcgtcaatc aaccctagca
    10081 tttggctgac tatcgcaagc gtaatattgg cattactcat tgcaatggct tgatcggtga
    10141 ggctgagaga gtctcggata ctaccttgtg ctgcttttgc caacttttct agtgccaaag
    10201 gctcaaacgg aatgttctct gcatttagaa taaattcaag atgacgggca atttgcgatt
    10261 gctctaatgc ccgcagatga aattgcatac agcgagagag gatcgtaatc ggcagttttt
    10321 gcggatcagt ggtagccagc aagaatttga catattcagg cggctcttca agggttttta
    10381 gtaaggcgtt gaaactatga cgagagagca tatgcacttc gtcaattaaa taaaccttaa
    10441 aacgcccaac ggtgggtttg tattgaacgt tatcaagtag ctcacgggtg tcttccactt
    10501 tagtacgaga agcagcatca atttcaatga gatcgataaa atgcccttct tcaatcgctt
    10561 tacaattcgc acattcaccg caaggctcgg cggtgatccc gtttacacag tttaagcctt
    10621 tggcgaataa acgggcaata gaggttttac ccacaccacg agtgcctgaa aacaggtaag
    10681 cgtggtgcag tctatcttct cttaagctgt tttcaagagc agataaaacg tgttgctgac
    10741 caactacttc cgagaagcgt tgcggtctcc atttacgggc taaaacttga taactcattg
    10801 atttttctat tcaatttgga aatcacaagc ggtcatcttt ccgaaaaatt ttgcaaaatt
    10861 ttagcaaaaa gccaccgctt gttccccatt aatgaccttc aaagctgact aggctaaagg
    10921 atttaacccc ttctttttcc aaacgctctt taccacctaa ctcaggcagc caaatcacaa
    10981 aggcagcgtg ttctacgtta ccacctaagc gacgaattag ttttgcagtt gcatcaatag
    11041 taccaccggt tgcgagtaaa tcgtcgatga ccaatacatt atcattagca ctcactgcgt
    11101 ctttatgaat ttctagcgtg tcttcaccat attcaagcgt gtaagattgc gaaatcactt
    11161 cacgtggtaa ttttttcggt ttacgaacca acacaaaagg cacgcctaac gctaatgcaa
    11221 caggggcacc aaaaataaac ccgcgagatt ctgtgccgac aattttagta atacctttgt
    11281 ctttaaattc tgcaacgatg gcatcaatgg tggcttggaa tgcagttggc acttctaaaa
    11341 gtgaagtgat atcacggaag ataatccctg ctttcggata atctggaatg gatttgatag
    11401 aagatttaat taaatctaat tggttcattg tttgacctac gtgtaataaa aaaataactg
    11461 gaaaactcta tagaaaaaca gcagaaattt caaggagaaa ttgataacct tacgtttgat
    11521 agtacagctt acttttcagt ttccttttcc ctatattata gataaatatc ttccctgttt
    11581 cgtctggttt taagcaaacg taaaatccaa acatactgct cggggttttt ctccacaaaa
    11641 tattcaatta ctcggttcat ttctcgggcg gattgaattg ggtctcctga aaattcaagc
    11701 ggtggcaaaa tttccatttc atattttgct ttttccgcat tataaatcga gaacattggg
    11761 atcacttccg catttgccac tcttgccatt ttatttaagc ccggcaaagt ggctttttcg
    11821 gtggcaaaaa agtcggcata cacacttagc tcttcgccga aatcttcatc gggcagaaaa
    11881 taaccaacat cacctttacg cacatcggct aaaaacgctt taatcccatt ttgacgagtg
    11941 tgcattcgcc cacctaaacg ctcacgggta atattccaca gccagtccac caacgcatta
    12001 cggtgtggat tgtacattga tgtcatcgga taaccgagcg agaacatcgc cacccccgcc
    12061 atatcaatcg accaagtatg tggcactaac ataatcacgt ttttaccgct ctctttggct
    12121 ttcaccacat tttcaaagcc ggtaaattca caccgttttt gtaaataaga ggccgggcgg
    12181 attgcagttt cgccaatcgc caacatggtt tgtgctaccg tgataaacat tttctcgacc
    12241 acttcttcac gctttttctc actccaatcg ggaaaacagt aacgcaaatt cactttagca
    12301 cggtggtagc cttttttatt tttctgcttg agatagcgat acgccatctt acccacaaaa
    12361 gcggataatt tatccctaat tcgcaccggc acataggcta aaatcactaa tcctaataca
    12421 cctaaccata cgccccaata tttcgggtgt agaaaagacc ataggaattt gtgcgtatag
    12481 ccgtcttggg cggtaattcg tgtcattcta taattcctca ttatttgtca ctttctttgc
    12541 ttcgccaaag aaagtaacca aagaaaggca accctacttc accgctatct tcgcttggtt
    12601 tgaatttgct taacgaaaaa attccaaact cgccgcttcg ctgctcaaac aaggaatttt
    12661 tcctacaaat tcaaagtcgt tcgggcggtt cagaagggaa cccggcagag catcattttg
    12721 caaaattttc caaaaaaatc accgcttgta tggtcggatc gggttccctt ctgagttgcc
    12781 cgaacgactt gaaattttta ggaaaataac tcgagcgaga gcgaagcgaa catcagggtt
    12841 atttttcgtt aagaaaattt caaccaagtg aggatagcaa caaagcaggg tgtgctttct
    12901 tttggttact tttctttgca caagcaaaga aaagtgacat aacacatcat ctcttatcaa
    12961 taatattctt caccgccaat atcaccccaa gtccaataaa agcccccgga ggtaaaattg
    13021 ccagtagtaa acctgaatca atatgcaata catcaatgcg tagggctttt gcccaatcgc
    13081 caaggagtag atctaagcct gaaaacagcg tgccgttgcc aataatttca cgcaacgcgc
    13141 ctagcaccac aaggctaaaa gtcattccca gccccattga aaagccgtca aaagccgaga
    13201 atttgacctc attttttgag gcataggctt ctgctcgtcc aatcacgata cagttggtta
    13261 caatcagcgg aataaaaatc ccgagcgatt ggtaaacagg gaaagcaaaa gcattcatta
    13321 aaagctgtac tgccgttacc accgttgcaa ttaccatcac ataaatcgga atccgaatat
    13381 cgtgtggagt gattttccga aacagggaaa ccgtgatatt ggtgcaaatt agcacaaaca
    13441 ttgttgccaa gcctagtcca agtgcattgg ttacgctgtt tgaaaccgcc agtagtgggc
    13501 aaagccctaa taattgcacc aaagcaccat tatttttcca cacaccatca gcgaaaatcg
    13561 ttttccaaac gctggattgt ttcggggcaa cgtcaatatt cgtcacaggg atttgttgtt
    13621 ctctttccat ttctccccct atttgcacgc tttaaattga ttaaacattg tcgggttttg
    13681 agccagctct gtcaccaccc atttcgcact ttggcggata tgattgacca ccgcacgagg
    13741 tgtaatagtt gcaccggtaa attggtcgaa cttgccgcca tcttttttta cattccaatc
    13801 cgcttcgttt tctaaactaa aaagttgatt ggtaaaagat aagatccaat ccgacactcg
    13861 ggtctcaatt ttatctccca gccccggagt ttctttatgc tcaagggtgc gaacgcctaa
    13921 aatgttgccg ttcggctcaa tccccatcaa tagcacaata tcgccggaat agccgtccgg
    13981 agccgttcct tgaactaggt aagcggtcag attttccgat ttttttgcaa cataaatacg
    14041 gttcaaataa ggggcatttt cgagctgaac cagtttgcaa gtcgccaaca catcattatc
    14101 aaaatggctt ttcggcacaa cctcttccaa taatttgcgt tgttgcattg cggttacatc
    14161 atcaatcttg cctttggtaa gcaggtacac accggttgaa acagcggtgc aaagcaaggc
    14221 aataaagcct aaaattaagg cgtaatttaa ggtaattttt gaggtgttca ttatctgtta
    14281 tccaattttg tgccgtataa tctcggctgc gtataatggt cgattaacgg tacgcaaatg
    14341 tttgccaata acactgaaaa tgcaatcgca tcagggtaat ttccgtagta gcggattaga
    14401 taaaccaata atcccaccaa gccaccgaaa atcagttttc ctcttggggt aatggaggct
    14461 gttaccgggt cggtcgcaat aaaaaatgcc ccgaacatca tcgcaccgct aaagaaatgg
    14521 ctcacaaaat gcaagtgcga ttgttggcta aacagctcgg tgaatccact aaaaaaggca
    14581 aaagttgcca acattgctac cggaatttgc caatggataa tccgtttata aatcaacacc
    14641 aaaccgccga ataagaacgc aaggttcagt tgtagccaac cggtcgcaaa cagcccgttg
    14701 aaaatcggcg tattcattac cgcgtcaaaa cctgattttg caaggctgct tttcatacta
    14761 tcaagcgggg tagcttgtgc aatgccatca acactattaa ctagctgatg aatactaaaa
    14821 ccatcgctag ttaccccgta aaaaatcaac gaaatcgcat cacgaaatgt cggtggttca
    14881 cttaataact caatcggcac tatccacgcc gtcatttgca ccgggaaaga aaccaacaac
    14941 aacgcatagc caaccattgc cgggttaaat agattctgcc ccaagccacc ataactgtgt
    15001 tttgccaata ataacgccac aatcacgcca atcaacacaa gccaataagg agcataaggc
    15061 ggaatcgaca tcgccaaaat caaggcggtt aaaatacctg ataagtcagc caaatagaaa
    15121 gcggttgttt ttttgcgtaa ttttgcaatc ccgatttcaa tcacaatcgc aaggctaacg
    15181 gcaagcaacg tttgaatcag cacaccatag ccgaaataat aaagctgaac cccaaaagca
    15241 ggtaacatca tcgcaatcac ccacagcata aaattcgcag tgagattgct cgaatgagtg
    15301 tggggggaac tgaccatttt aaacatctat aaaacctttt tagtaaaaaa ttgcaaaaaa
    15361 atgaccgctt attaaagtct cggcaaattc aaattaaagc gtattgccag caggcggata
    15421 ataattacgg tgaacacggt ggcaaggtaa acccaatcgc tttcgagccc aactgagttt
    15481 gcagccacaa aaatcacacc accgataagg ctggcggtca catacacttc tttttgcaaa
    15541 atgatcggca cttcgttgcg taaaatatca cggattaagc caccaaaaca gcctgtcaca
    15601 ccgcccagag ccacacagat cagtgggtgc aagccgaaat ccaagccttt ttgcacgcca
    15661 atcacggtaa atacgccaag cccgatggca tcaaacacca gcaagccggt ttgccaactt
    15721 ttgcgggaaa tttggttgcg gaaaatagcg gtaatcacca ctgcaagggt aatcatcagc
    15781 acatagatcg gttgtttcat ccaaaacacc ggcgtggagc caatcatcat atcccttagc
    15841 gtaccgcccc cgaccccggt cacaaacgct aaaataaaca taccgaaaat gtccattttg
    15901 tgctggcggg cagcaattgc ccccgaaatc gcaaacacga tagtgccgat taagtcctga
    15961 ataaacagga acgaccacgg caatgccgga attagctcgc taaacattgt tgcttttctc
    16021 ctgctgagcg gcttttttcg ctttagctct ggcgatggcg gccgcaacgg cggctttgcg
    16081 tgggtcttcg ctttccgttt tgggcgaatg gttattcgcc cctacagatt tatccgatgt
    16141 agtttcgttc attgattgta ggggcaaatc attatttacc ccaatcacag cattggcaat
    16201 atcttccggt ttttcgaccg cttgttgagc ttgttttttc gctttagctc tagcgatagc
    16261 tgctgcaacg gcggctttgc gtgggtcttc gctttctgtt tcgggcgaat ggttattcgc
    16321 ccctacagat ttatccgata ccgtttcgtt cattgattgt aggggcaaat cattatttac
    16381 cccaatcacg gcattggtaa tattttctga tttttcgacc gcttgctgtg cctgtttttt
    16441 ggctttggct cgggcaaggg cagccgcaac ggcggctttg cgtgggtctt cgctttctgc
    16501 ttcgggcgaa tagttattcg cccctacaga tttatccgat gcagtttcgt tcattgattg
    16561 tagaggcaaa tcattatttg ccccaatcaa ggcatttgta acattttccg atttttcgac
    16621 cgcttgttct gcctgtttgg ctaaacgtct ggctctgcgt tgtgccatta aatcgctgtt
    16681 atcaggctcg ccgttaggtt ttacctgtac ttctgccggt atttcttgga ctgtttcaac
    16741 cgcttttttc gctttcaggc gttcaagagc cgcttttaca ggatcaacac cacctgcatt
    16801 tgccacttct tcacggcgtt tttccgccgc ttggctaatg cgagcagttc tggcatctcg
    16861 ttctttttgt aagcgagctt ctctcgcctc aaagcggatt ttagcctctt ccgctttgcg
    16921 ggctttttcc tcaatttcct cgatttttgc tttttcttgg cggaaatatt ggattaacgg
    16981 aatgtagctt gggcaaacgt aagcacaaac gccacactca atgcaggcat ctaaatggta
    17041 ttctttcgat ttatcgtgat cttctgcacg ggcaaaccaa taaagttgct gtggcaataa
    17101 ccccaccggg caagcatcgg aacagcttga acagcggata caactacgct ccggttcagg
    17161 tggtgcatat tcaaaatgat caggggcaat caagcagttc gcagttttgg taatcggggc
    17221 ttgcaatgca ggcaaaataa agcccatcat cggtccgcct aaaaacaccg gaaagcgttt
    17281 atcggcttga taatctacct gctccaacaa gtgctgaatt ggcgtgccta atcttgccca
    17341 cacgttcccc ttgttgcgaa ttttatcgcc tgtcagcgtc actacccgtt caatcaaagg
    17401 ttcatcatca ataattgccc gtttaaccgc aaacgccgtg ccgacattgt gcatcacaat
    17461 gcccatttca atagtgcgtt tgccagccgg aatctcaagt ccggtcaaca cttgaatcag
    17521 ctgatcagaa gctccggagg gatatttagt cgggatcgcc cgcacaaaca tatcgttcga
    17581 gccttttaaa gcggtttcta aagcttgaat agcgtgcggt ttgttgtctt caatcgcaat
    17641 caccacttct tccgggcgaa gcacataacg cagaatgcga ataccttcga taagatccgc
    17701 agtgaaatct tgcattaagc gatcgtcaca ggtgatgtaa ggctcacatt ctgccccgtt
    17761 aatcaccagt aatttacagc gtttatccgc caaacttaat tttgttgcgg ttgggaatac
    17821 cgcaccgcct aaaccggcaa tgccatattg gtaaactttt tggataattt gatcgcttgt
    17881 taggcttaaa aaatcctcaa tcggctggcg ttccacccat ttatctttac catcggtttc
    17941 aataatcacc gttatttcgg gcaaacctga ggcgtgagcg gaaacataag gctcaatccc
    18001 aatcacccgc ccggaggttg ggctgtgtac gggcagttga cggaagtgat cgcctttcgt
    18061 gagcggctgc cctttcaata ccacatcgcc gactttgact aataattccc ctgcccagcc
    18121 agaatgttga accagtggca catagaaaaa cttcggtaaa tttaaggtgc gaattggctt
    18181 gctgtttgat tgggatttat tttccatcgg gtgaataccg cccgggaaat cccacagttt
    18241 acccgtttct ttattttggc ggattcgctc aatcactaaa ttaggattgc tcatttttgc
    18301 ctccgccggt aactaatttt ctctgcaatt cagtggtatt cacaatcgga ataattaaat
    18361 cttggtcaaa tttccagttc caagattggg ttgtcggttt aattggtcgc atttcaatac
    18421 agttggtcgg gcaaggggcg acacaaagtt cacagccggt gcaaagatcc ggaataatgg
    18481 tgtgcattgc tttattcgtg ccgataatcg catcaaccgg gcaagcctga atgcacttag
    18541 tacagccaat gcagagatct tcaatcacaa aagccacttt catctcaggc tctgccatac
    18601 cttccattgg cggcacttct accccaagca attcggcaag attcaccact aaaggttgtc
    18661 cacccggcac acatttagtg atcacatcac cattagcaat cgcctcagca taaggcttac
    18721 agcccgggta gccacattga ccgcattggc tttgtggtaa aagggcatca atttgatcga
    18781 caatcgggtc ggattcaact ttcagtttaa tcgaggaata gcctaaaacc gccccgaaaa
    18841 tcagtgcgat cacagcaata gcgataagaa tataagcgat aattggcaaa tcaagcatta
    18901 gagtttcacc aatcctgtaa agcccataaa ggcaagcgac atcaagcctg cggtaatcag
    18961 agcaattgat gctccttgga acggacgagg cacatcagcg gcagccaaac gctcacgcag
    19021 agccgcaaat aaaactaaca ccagcgagaa accggcagcg gctccaaaac cataaagaac
    19081 agattccacc aagttattgg ctaaattcac gtttaataat gccaccccta atacggcaca
    19141 gttggtggta atcagcggta aatagatccc aagcaagcga taaagtgtcg ggctggtttt
    19201 atgcacaatc atttccgtta attgcacgat caccgcaatc actaaaataa acaccaaggt
    19261 acgcaaaaat tgagcgttta acggcttaag caaataggtt tccatcaaat aagcagagag
    19321 cgaggcaacc gtcagcacaa aggttgtcgc caaccccata ccaatagcag tttccacctt
    19381 tttcgacact cccataaacg gacaaagccc tagaaattta actaagacaa agttattaat
    19441 aagggcggtg ctgatgacca acagaatata atcgaccata aattccacaa aattaaatat
    19501 acaagcggtc aaaaacgcat tttattttgc aaaaaacaga gaaaatctga ccgtttgtta
    19561 aagcatctca ttaaaaataa acgttatatt atctcttgtt ttcggctcat tcacaataag
    19621 aaatcggagg tacttctagt aaacatacca tatcaaatat gatcttgtta cctttgtttc
    19681 tatctctggt agaatggaga atgtggggac taagctatac agcatgaaag gtgaaaggag
    19741 cttgattttc taagttaatc ctaaaaagtc tcactccttt gatatagagg atattagaat
    19801 aacaaccaat taattactcg ataaataaac ataataatcc caaatataat gaaaacataa
    19861 taaatctttt tccataaagg gagttttacc tcttcttcag aatattcttc atcatccttt
    19921 tcagacaact ctataagatt atagaattca tcaagcattt tttctttgaa tttatatcct
    19981 cgatttattt taagttcatt atgagacgct gccgaaagtg tttggaaaag aaacgggttt
    20041 tccagtacgt ttggaaagtt ctcttgaaca taagctttag attgagataa tttgttaaaa
    20101 gtatggaaac aaccaacata cataataagt tgttttgttg gcatttcttt tacccaagat
    20161 tcaagttcat cacactgtgc tataacctca tcaacttgtt ctttcccaaa ttgttttaca
    20221 gcatctttat agtgatcact atttttcttt ttgaaataag gtggtaataa tccagccatt
    20281 tttactccac attggttaga gataaattaa gtgttatctt ttttgctaaa ccatttattg
    20341 gctacaaaac caaccccagc agttacagcc gcaccaagta acattgaact gagcgatgaa
    20401 ctttcttgtg gttgagattg cttttccttg acagattttg ttgtagcatt agcttttgct
    20461 ggacgtgtta catatgtctc agaccctcta acacaagaaa taatttttgc gtatggatgg
    20521 ctcgctttaa aacgattttt agcatctata atatttcttt cagaaacagc accttgccca
    20581 ttcttgttat atctggtatc tg
//
LOCUS       DANMGB010000026        20541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.026, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000026 DANMGB010000000
VERSION     DANMGB010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.026"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..549
                     /locus_tag="PXG19_000716"
     CDS             <1..549
                     /locus_tag="PXG19_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL6066040.1"
                     /translation="LSDQYNFLALYPQDKTQICQKFQKEQISQADLSDKQFRFLQYQF
                     ACQFHSLFKDKKPTKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIV
                     LAKNAINENLPQEFYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAEL
                     EARYSAWRYLPYSEHLMGAVDD"
     gene            542..835
                     /locus_tag="PXG19_000717"
     CDS             542..835
                     /locus_tag="PXG19_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL6066041.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            884..4174
                     /gene="recC"
                     /locus_tag="PXG19_000718"
     CDS             884..4174
                     /gene="recC"
                     /locus_tag="PXG19_000718"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL6066042.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4310..7255
                     /gene="ptrA"
                     /locus_tag="PXG19_000719"
     CDS             4310..7255
                     /gene="ptrA"
                     /locus_tag="PXG19_000719"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL6066043.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7304..8950)
                     /locus_tag="PXG19_000720"
     CDS             complement(7304..8950)
                     /locus_tag="PXG19_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066044.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            9026..11116
                     /locus_tag="PXG19_000721"
     CDS             9026..11116
                     /locus_tag="PXG19_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6066045.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11187..12875
                     /locus_tag="PXG19_000722"
     CDS             11187..12875
                     /locus_tag="PXG19_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL6066046.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12887..15703
                     /locus_tag="PXG19_000723"
     CDS             12887..15703
                     /locus_tag="PXG19_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL6066047.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15826..15957
                     /locus_tag="PXG19_000724"
                     /pseudo
     CDS             15826..15957
                     /locus_tag="PXG19_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(16012..16773)
                     /locus_tag="PXG19_000725"
     CDS             complement(16012..16773)
                     /locus_tag="PXG19_000725"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL6066048.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16785..17816)
                     /gene="murB"
                     /locus_tag="PXG19_000726"
     CDS             complement(16785..17816)
                     /gene="murB"
                     /locus_tag="PXG19_000726"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL6066049.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17920..18594)
                     /gene="crp"
                     /locus_tag="PXG19_000727"
     CDS             complement(17920..18594)
                     /gene="crp"
                     /locus_tag="PXG19_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL6066050.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18656..18874)
                     /locus_tag="PXG19_000728"
     CDS             complement(18656..18874)
                     /locus_tag="PXG19_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL6066051.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18877..19482)
                     /gene="slmA"
                     /locus_tag="PXG19_000729"
     CDS             complement(18877..19482)
                     /gene="slmA"
                     /locus_tag="PXG19_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL6066052.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19494..19949)
                     /gene="dut"
                     /locus_tag="PXG19_000730"
     CDS             complement(19494..19949)
                     /gene="dut"
                     /locus_tag="PXG19_000730"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL6066053.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
     gene            complement(19983..20516)
                     /locus_tag="PXG19_000731"
     CDS             complement(19983..20516)
                     /locus_tag="PXG19_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL6066054.1"
                     /translation="MYLDCDLVVNGNITDPFTNLDFSFGSIAAIADPYVNKLKNHPYI
                     YKNYFNAGVFYLNAKHFSKQPFIQLTERFKENLPFGDQDILNYCFQYNWIELDRKYNY
                     QTEHLLDDIAQQKISPNYIPHIIHFTGGIKPLEGKFNSSYVENVASLFRFYHNTSWEI
                     LTELPLGTIQLKPFITE"
BASE COUNT         6172 a         4247 c         4444 g         5678 t
ORIGIN      
        1 ctttccgatc aatataattt tttagcgtta tatccacaag ataaaacgca aatatgccaa
       61 aaatttcaaa aagagcagat cagccaagcg gatttatccg ataaacaatt caggttttta
      121 cagtatcaat ttgcctgcca attccatagt ttatttaaag ataaaaaacc gactaaagag
      181 aaatatattc actttaccca tttggcggat tatttagatt tatcaaatgt gccaaaccaa
      241 gagatttata ctattcattc tttagctgaa ttacctagta gcagtgaacg tgagcctaaa
      301 attgtgcttg ctaaaaacgc aattaatgaa aacttaccgc aagagtttta cggcattgtg
      361 ataaccgact atctgtttga tattaccggc aaaaaaatgt acggcacgct ttattcctct
      421 tatgataatg cccgagagga gcgaaattta acgtttaaaa aagaggtact ggcagagctt
      481 gaggcgaggt attccgcttg gcgatatttg ccatattccg aacatttgat gggagcggtt
      541 gatgattaaa tataaagcag aaacggcttt gtcgcttttg gttgccatca cgctatttgc
      601 gattgtggtg ttgagtttca gccagtggca atcggcacaa aaccacaggc taaatcaaca
      661 tttccaacag caacaagcgg ttatgatttt agaaaatcag cttgccctca aattagccgg
      721 gttagattgt gaatcaagta ttactcaaaa tcagattcgc tatcagattc aatgctctgg
      781 caatcgctta accattcgct ttccgttagg caaaattgag ctgaataatg attgaatcgt
      841 ccctcgcttt ggaggacaat aattcaatta gcgaggcgtt attatgttta cactttacca
      901 atccaaccaa atttcatcac tggcggagat gctggtgaaa atccagcagg taaacccact
      961 tgaagatccg tttgagccgg aaaccatttt gatccaaagt cagggaatgg cacagtggct
     1021 acaaatgcag attgctgaat taaacggtgt gatggggaat tgcgattttc tctaccctac
     1081 tacattttta tggcaacagt atcggctgtt gttcccggag ctgccgaaag agaatatttt
     1141 tgagcgtagt tcgttggttt ggcggattat gcggttattg ccgagttgct tgacactatc
     1201 ggagtttgct ccgctaaagc gttatttagg tgatcaacct aataaagaac agtatcagct
     1261 taagctctat caactttctg ccaaaattgc cgaattgttc gaccaatatt tggtgtatcg
     1321 cccccattgg ctggttagct gggaagaggg caacttacaa gcgatcgaaa atgagataaa
     1381 aattgcaact gccgctaagc cgattgattt tgacttaatt cgagccgata tgaaatggca
     1441 aagccattta tggcaacaga ttgtatctga tctgcaatcg gaatctgatg agcaggtttt
     1501 tactacctcc caccgtgcct atttgcaaca aaattacttc gctaagttag atgaccttac
     1561 tgaaacggaa aaagccaaat tgccaaaacg cattttcatt tttgggattt cgtccttctc
     1621 gccattacag ttagcggtgt ttaagaaact cagcgagcat tgcgatattc acctgttctt
     1681 ttttaaccca agcgaaaaat attggggcga cagtgtggaa gaaaaagtgt ggcaaaaatt
     1741 ggcgttaagc cacaagattt cgcaagacga tctggataac ttattggcgg agcaaagaaa
     1801 taaactactg aatctttggg gcaaacaagg gcgggatttc ttagctcaat taatcgaatt
     1861 tgagccgaat accatggatg tctttgtcga accagaggaa aacagcaacc tcaataaact
     1921 caaaaaacag attttcagct tagaaaatga cgccactatt accgatttaa ccgccgataa
     1981 ttcactccaa attcattcgt gccacagccc aatgcgggaa gtggaagtgt tgcataacca
     2041 gctcctgaat ttgtttgagc aagatagcac tttgctgccg aaagatatta ttgtgatgtc
     2101 gccggatatt aataaatacg ctccttacat tgatgcggtg ttttctcgct acaatacggg
     2161 taatcgggat cctcgctata ttcctttttc attatccgac caagcattta cgcaggttga
     2221 tccgattatc cacagtttcc tgcaactgct ggcaatgaaa gaaagcccgt ttaatgccga
     2281 agaactgttt gatttactgg aagtgaatgc gatccaaacc cgttttggct ttagtacgga
     2341 agatattcat accctgcggg tttgggtgag aaatgccggc gtacgttcgg gtgtagaaat
     2401 cgagcaacct cactggcaaa actacaattc gtgggaaaac gggctaaacc gtttattgct
     2461 tggctcaagc ctgaaagaag agcaggggat ttgggaaaac acccttgcct ttggggatag
     2521 ctatggctta aatgccgagc tggtggggcg acttgcctct tttattgagg ctttattagc
     2581 gtgggtaaac tttctgcaaa cgccacagcc gttggcagcg tggcagcagg caataaaaaa
     2641 tttgactgct gatctgtatc aagaaaatgc cgaaaatgct gcatcaattt tattgttgaa
     2701 taatgtgaat gatcagatta tcgagcaaat ttccgcaacc catttttcag acgatctgca
     2761 aattgaggtt ttagccttat tgtttgagca gcagctcagc caacattcac agcagcttaa
     2821 tttcttggtc ggacgggtga attttgccac cttgcttccg atgcgggcga ttccgtttaa
     2881 ggtaatttgc ttgctgggta tgaatgaggc agatttccct cgccaacaac aaatcaatag
     2941 ctttgattta atgcagtacg ccccgaaaaa gggagaccgt gccaaacgtg atgatgaccg
     3001 ctacttgttc ttagaagcct tactttccgc tcagcaaatg ttttacatca gctatatcgg
     3061 gcagtcgcaa aaagacggca aagagatgct accgtcgatt ttggtttccc aactgttaga
     3121 tgcaatgaat gaagctttaa cgcctgaatg caagcaacaa ttaagcgatg aagtggaagt
     3181 tttggtcaga aaacaacctt taagtgtgtt tagcaaaaag aattttaccc acccacgaga
     3241 tcacgcttat aacgcagagt ggattatcaa gccgactgtt gccgtacaag attttcttag
     3301 tgagccttta accaatgaaa gcgtggcttc gctagaactt gatgaattaa tctcttttgt
     3361 acaaaacccg attaggtttt tctttctaaa agtgttgggg atttcgttta acacttatga
     3421 tgacaccatt gatgaaagcg aaatttttga gatgtcgggg ctggataact accggatttt
     3481 aaacgaatta ttaacgataa atttagcaca acagcaacgt ttttttgccg aagagcaact
     3541 caaaggcaat ttacctgctt cttattttgc tcaaattgcc acacaagatt tgatcggcaa
     3601 aattaccgaa atgcaagcgg cgttaagcca ctatttagcc agcgaaagcc gtattttgag
     3661 tgttaatcgg gaggttgagc tggaacgcca aaccctcacc ctaaacggca atattgccaa
     3721 cctatatcag aatgaagtgg tgctatggcg agtagggcat ttacgagata aagacaagat
     3781 tcagacttgg atctaccatt tattattgtg tgcctatttc cctgaaaaaa cggtgaaatt
     3841 ctattaccga gagggtgagc aagttggtgt gttgagcttt gaaaccgtct cgcagataga
     3901 ggcattatcg caattaagca tttatttgaa tgcttatttg gacggattat cgcaagccca
     3961 gttagtgatc tacgaccgaa ttgaggaata tctcaaaggt gatggcacaa acagcgaaca
     4021 agttcttatc gatttagcag agaaagatga gcgagacggc agctatctcc atcggcttct
     4081 cgctcaaact aaagagctgg attctcaagc gattcaccaa cgtactcaaa gctggtttag
     4141 cttaatgaat cagaaaatag cgaaaggcga ttaactacaa gcggtcgttt ttggctgaaa
     4201 atttgcaaaa tgagaaggcg aataataatt cgcctaccta taaaaataga attttttccg
     4261 tattttactg tcaatttatt actacaatgc taatttcaaa aggagatgta tgaaattatc
     4321 ttttcttacc caattcgttg cagcggcttt tgccctcaat gtgatgactt accctgcatt
     4381 tgcggaagtt gcaaaaaatt ctgaaaaaac gaccgctagt caaccccaat cccaactcgg
     4441 ttttgagctg attaaacaga gcattaacaa aagcccgaat gataaagcga tttatcaagg
     4501 tattaaactt gataatggaa tggaagtgct actgatttcc gacagtcaag cgaataaatc
     4561 gttgatgtct gccattattc cgattggctc aatggatgac ccgatttctc agcaaggttt
     4621 agcccactat cttgagcata tgatcttgat gggctcgaaa aactatccgg aaaccaacag
     4681 cttagacggt tttttaacca aaaatggcgg tatgaataat gcctcgactg cttctcaccg
     4741 cacggcgtat tatctacaag tcaataacga agcctttagc gaagcggtaa cacgactggc
     4801 ggatacgtta gctttcccgt tattgctgga aaccaacgcc aagaaagagg ttaatgcggt
     4861 caatgcggag atggtgcgag ctaaatcgca cgatgggcat ttattgcaca gtgttaattt
     4921 agccaccgca aacccggctc atcctgctac caaatttgcg gtaggcaata aagagacgtt
     4981 atctgacaag ccggatagca aattacaaac cgagttggag caattttata aacagcatta
     5041 ttctgcgaat ctgtttaaag tggtgcttta ttccaatcaa tcgattgagc agatggcaaa
     5101 attggcagcc aacactttag gcaaaatgga aaacaaacat ttcagcatac cgcaaaccgc
     5161 tgagccacgt tatcgtgatg aggacaaatc ggtatttatt caatataagc cggtgaaatc
     5221 caacaaaatg ttagtcattg gctttgattt tccgaatgac gaaatgcagt ttaagcacaa
     5281 aaccggtaaa tatattgctt atatgttaaa caataatact gacggcacgc tttcggatta
     5341 cttgattaaa caggggttgt ctgacggcgg tattgaggcg gttagcagtg ccaatatcgg
     5401 gcgggatcga ggctcgtttg acatctatat tgaactgaca gacaaaggtt tgagcgagca
     5461 agatcaaatt atttcattgg ttttccaaca aattgagaag atcaaacaag aaggcattca
     5521 agagagctat tttagcgaag tgaaagagag cctgaagcag gatttccaac atttgcaagt
     5581 ggaaaaaaat atggatttcg tggaatttat tgccgatcaa atgctccatt tcccgttaga
     5641 acacgttatc gatcagcctt atctgaccga aacaatggat aacgaggcaa ttaaagcaaa
     5701 attggcggca atgaatattg ataatgcccg cattatgtta gtcagcgata ctgccaaaac
     5761 cgacaagaaa accccttatt ttgaagcagg ttattcggtg gcaaaaatca cgcaagaaca
     5821 aaagcaaaaa tggctggatt tcagtaaaaa tccacagctc aatttgcctg aattgaaccc
     5881 gtatttcact accgatttta ccttaaacaa ggtcgaaacc ggcttaacta aaccgaaatt
     5941 gattaacgac caagcgggga atttaatcta tacaatgccg agcgtgtatt ttaccaatga
     6001 accgaaggct aaaatcggcg ttggctttaa tattcgcccg agaaaagatg acttaaagag
     6061 cctgaccgca gcgtctattt tgggttatat gaacaattta gcccaaacca agttagattt
     6121 tcagtcttcg gtggcgggta tgaatttaag tttagctccg gcggcaaacg gtttagcctt
     6181 aagtgcagag ggttataccc aaaatctggc taaattaatg ctagacagcg taaaacagtt
     6241 cagccgcttt gagtttaacg aagacgtgtt ggcacaggct aaacaacgtt tgcaccaaga
     6301 gctggatcgt aacgaaaaag aaaacagcct taatcaagct aatgcagcat taagccgttt
     6361 tgcctcttac ccttattttg atgtgccgaa acagcgtgag atgattgata gcattaccct
     6421 tgcggatatt gagcaactac gccagcgaat tttgcagcag agcagcggct ttaagttgtt
     6481 atcggtgggg aatttgtcgg ctgagcaggt ttctgctctg gcagaggatt tacaagcggt
     6541 cataaaaaac caaaaatctg caaatgctac cggacagtat gtggatgtga gtaccagtca
     6601 gcgtaagatt aatgtgatta aaagcgtgcc gaatgaagat aatgcgttgc taatggcatt
     6661 tatgccgaac ggctataacg agctggaaag ccttactcga gccaaattgc tcagaagcat
     6721 tatttcccgt tggtattttg atgatttgcg tactgataag caactaggct atgtggttta
     6781 tgcgacagat aatatcatcg ggaaaaccgc cggtatccag tttatggtac aaagcccgaa
     6841 taccacaccg gcagggattt tagagcataa cgaacgtttc tttacacaaa gtttcgaacg
     6901 tttaaaaaat ctatctgatg aggaatttgg aaaatatcgt gatagcctag tggaaaaact
     6961 gcaatataaa ccggagtctt tagcggaaga gttttctgag ttcggttcag actttagcag
     7021 aaataacccg aaatttgacc gcttgcaaca ggtgatcgaa ttaaccaaag cactcaccaa
     7081 agcagatatt gtggcatttt accaaaaagc tgtgattgaa aagcaaggct tcgtgtttgt
     7141 cagccaagct gtcggcacca aaaccaaagc tgaagacgtt gcgaaatttg acggttttga
     7201 acagatcgaa agcattgaaa agctacaacg agagtttgag attaaggatt attagagagt
     7261 tattagagag agttaggggc gaaaaatttt cgcccctcat tttttaatcc acaattttca
     7321 ccggatataa gtaagtatat ccgaacggac tttgtttgta gccttcaaca cgtttgctgg
     7381 ttggggcaaa gttaattgag tgagccacgt taatccacgg agcttgctct cttaagataa
     7441 cctgtgcctg ctcgtataac ttagtacgtt ctgctttatc agatgagcct aatgcttttt
     7501 ctaataacgc atctaactca gggttagtaa agcgagcata gttactgttg ccgatatttg
     7561 gcgtgccgaa tagtggcgat aagaagttat ccggatcgcc gttatcgccc gaccaaccgt
     7621 aagttccggc ggttaattca ccggctttgg tacgcttgat gtaatcaccc cattcatagg
     7681 tgactaattt tgcttttacg ccgatttttt cccagtcggc ttgaataatt tcagacatac
     7741 ggcgtgggtt cgggttagaa gcacgcacca caggctgcac ccataattcg gtttcaaaac
     7801 cgttcgggaa gcctgcttca gctaatagtt gcttcgcttt ttccacgtta tattctgaat
     7861 ccgctaagct gtcgttatag ccccaaatgg ttggcggaag tgggtttttc gccgcaaaac
     7921 cgttaccttg gtaaactaca tcaataatcg cttttttatc cactgctaag tttaacgctt
     7981 ggcgaacttt cacgttatca aacggagctt tttcggtatt gaatgccaca taagcaatgt
     8041 tcaaacccgg ttgagaaagt aaattgattt tcggatcatt tttcattttc tcaatgtcgg
     8101 ttgcatttgg gaagtccatt aaatcacatt gaccggattg taatttcgca taacgggttg
     8161 ttgcatccgg cacgatctca aaaatcaaac ggtcaatgtc aggcttacct ttccaatact
     8221 ctttgtttgc tacataacga ctggcttggt ctagcacata accgctaaac acaaacggac
     8281 ctgtgccgat tggcgtggta tctaccgctt caggtatgcc ggctttcatc attttatccg
     8341 catattccgc cgaataaatg gaggtgaaat ccataccaag gctggataag aatgacgcat
     8401 cacgtttggt taaggtaata cgaacggtgc tgtcgtccac tttttccacc gatttcaata
     8461 atgtcgggaa tttcattgcg ttgaaatacg gataagtgcc gttagagacg gtgtgatacg
     8521 gatgattttt atctaactga cggttaaatg aaaatactac atcgtccgca ttcaattcac
     8581 ggcttggagt gaagtctttg tttgaatgga atttcacgcc tttgcgtaat ttaaaggtgt
     8641 aagttaagcc gtcttcgctg atttcccagc tttctgccaa tgccggttca atatcggttg
     8701 tacccggcac aaattccacc aagcggttgt aaatttgttg cgagctggcg ttataagata
     8761 aaccgtccat cattaaaatc gggctaaaac cggttggcga acggctaacg cagtttacaa
     8821 aggttttctc ggtttgcggt tttgctgctg ccgcagtagg tttattttcg ttgcttttat
     8881 catcgcaagc cgctagagct aataccgcta aaacgcttgc actaattttg gttaacgttg
     8941 gaaatttcat attattctcc gcttaatctt aggattaact tacgaagatt accttttcca
     9001 caatgaggag taaagaacaa aaagcattat ttttgcaaat caatccatag aattagatac
     9061 cgtcaacgtc attgccaccc gtgatccaag taaatttgcc gatacgccac aaaaacaaac
     9121 taaagatgca cttttggtaa aacaagcgac gagtgtggcg gcggcattaa aagcgttgcc
     9181 gaatgtggat gtgcaaggag gggcccgtgc gattgtgcag aagccgtcta ttcgtgggtt
     9241 gagcgataat cgtattgtgc aggtgattga cggagtgcgt cagaattttg atttggctca
     9301 ccgtggttct tattttgtgc cgatgtcatt gattcaagaa attgaagtaa tcaaaggtcc
     9361 aagcagctcg ttgtggggga gcggtgcctt aggtggggtg gtggcaatgc gcacaccgaa
     9421 tgcgttggat ttattgaaaa ataatgacaa attcggggca aaaatccgtc aaggttatca
     9481 aacggcgaat aatctttccg aaaccgaagc ctcggtgttt gcagcaaatg atcggtttga
     9541 tgccctgctg agtggtttct acaataatgc tgacaatttg cgtagcggtg aaggcaagga
     9601 actgaataac acgggctata agcaagccgg cggtttagta aaattcggct ggcaaattaa
     9661 cgatactcat cgtttggaat tatcccatcg tcatagccaa tttaaacaaa ctgcaccggg
     9721 taataacgag gtagaaaatc aatttaccga taatgatgtt agtgcacaaa ttagtgcttg
     9781 gcatgcggct aatcctggaa atccaagtaa tccagtatat cttgcgaaaa tgttagcctt
     9841 ttacggtcaa ttacattcaa gtcttggtag tgtgagttat ttaagtgatc aaaaaattac
     9901 cgataaaagc acctcactta actactattt caacccaagc aatccttatt tgagcacaca
     9961 agtgacatta tatagcaata gtaccactga aaacgaacat cgaaaaataa gtggtgtgga
    10021 agatcaaact aaactaagca ctcgtggtgt gaatatccgt aatcattccg aattgtcttg
    10081 gttctccttg gtgtatggcg tggattatat gttggataaa gtagccactc agcgtgggag
    10141 aaataatacg gacgcacaat accgtgctaa tccttatgat gctaaatcta aaactacagg
    10201 tgcttattta attgcacata ttccgctgtt tgatgaaaaa gtggtctttt ctccgagcgt
    10261 gcgttacgac cgtttcgata cttcaagtga aacggtgaaa tataaagaca gccattggtc
    10321 tcctgctgca aaacttactt ggaaagcgac aaattggttg gatttaaccg cgaaatataa
    10381 cgaagctttc agagcccctt ctatgcaaga acgatttgtg agcgggtctc attttggtac
    10441 cacagtgaga ggattaccta ttaataatat tttcttaact aaccctaatt tacgcccgga
    10501 aacggcaaaa aataaggaag taaccttcaa tgtacatttt gataatgtca tctcgcaagg
    10561 agataaattt aactttgaag cgacttattt ccgtaatgat gtgaaggatt tgattaatct
    10621 tcaagtattc aaagcaaatc ctacaagccc aatggaattt attcccactc gttcccaata
    10681 tcaaaatatt gcgaatgcac gtttgagtgg tattgaatta caaactcgtt atcaaactga
    10741 acgtttggca gtttttgcta actacggtag tacaaaaggt aaagataaag acagcgggga
    10801 agccttgtcg aacattgctg caagcaaaat cggcttcggg gtcaattatg ccgtggtgca
    10861 agacaaattc acggtggggg caaacgtaac ccgttatcaa gcacaacatc gtgtgccgaa
    10921 aaaccacggc gtgacttacc aaggctatac gctgaccgat ctacacgcca cttacgcccc
    10981 attaaaaggc gaatggaaaa acctgcgttt agacgtggcg gttgaaaacc tattcgataa
    11041 aaaataccaa ccggcattca gcttaatgga aggcagcggt cgtaatgtga aactcagtgc
    11101 ggcttacagc ttctaatgtc tttaacggaa gacggcacaa gcggtcgttt tccggttatt
    11161 ttttgcaata ttaaaaggga gttactatga aattttatcc gtcgctgatc gcaagtgcgg
    11221 tcagttttgc cgttgttttg agtggacaag cggcagtgaa tgtgccggat gccggctcgt
    11281 tacagcgtga attagaccaa cgtcaagctc aacaaaaagt caaaccgagt ggcgaatggt
    11341 ttaatcaagc ggcaaaagca ccttataccg caacggacgg tcaagaactg acatttccat
    11401 taactcaggt acaagttttt gatcgaacca accaagaaat ctctaccccg gaattagccc
    11461 cgattttggc aaactatgtg ggtaaagcgg tttcgctgac cgatttaagc aacttggcaa
    11521 atgagatcac cgagttttat cgtagccaca attatctggt ggcaaaagcc attttaccgc
    11581 cacaggaaat tgaacaaggt aaggtgaaaa tcctgttgtt taaaggcaat gtcggtgaag
    11641 tgcggttaca aaatcagagt gctttaagcg ataaatttgt tgcacgcctt gccaacacca
    11701 cagtgaatgg ttcggaattt atcctaaaag acgaattgga aaaatttgcc ctcacgatga
    11761 atgatgttcc cggggtgaat accggcttgg agctttctgc cggtaagcaa gcaggcgagg
    11821 cgaatttgct gattaagctc caaaatgccg agcgtttctc aggctatgta tcggcagata
    11881 accaaggcaa taaaaatacc ggacgttacc gtttagccac agggataaaa gccaataatc
    11941 tgataggttg gggcgatgag ttgaaagtgg atttgatgag ttccaacaac gctaatttaa
    12001 aaaatgcgcg tttggattat tcgagcttga ttgacggcta cgctacccgt ttgggcttaa
    12061 cggcgaatta tctcgactac gaattaggcg gtaactttaa agccctgcaa tcccaagggc
    12121 atactcacaa tcttggggct tatgtgttgc acccgacaat ccgcttgccg gattttcggt
    12181 taaacaccaa agtcagcttt aatcatcaac gtttaaccga caaacaacaa gcggtcaatg
    12241 tggcacaaaa acgccaagta aacagcttaa cggtgggcat taacgggtcg tggaattcgc
    12301 ttaaagacgg cacaagctat ttctctctgt ctgccttgtt cggcaattta gctaaccaca
    12361 ccaacgagca agcgcattat gtggcaacag attttcagcc caaatcccgt tttacggtct
    12421 atcaatacag cctgtctcac gaacaagcgc tgccaaaatc ctttgccttc aaccttggcg
    12481 tgaacgggca gtttgcggat aaaaccctcg acagctcaca aaaaatgtta ctgggcggtt
    12541 tatacggcgt gcgtggtcat caagccggtg tcgcttcggt ggatgagggg catttagtgc
    12601 aaaccgaact caagcattat ttaccgctct tttccaaaag cctgctgacc agctcggtct
    12661 tctatgatta tggttgggga aaatactata aacacagcgg atttttggcg cgtggtgtaa
    12721 acaatagcgt gaaattacag agtatcggag cagggctttc gctctctgaa gcaggcagtt
    12781 atgccattaa cgccagtgtt gccaaaccgc tgggtaaaaa aatcgagaat gcagataaac
    12841 accaattctg gttctccgcc atcaaaacct tctaaggaga caaactatgt ttaaacgtaa
    12901 tgcaatttct ctctgcattt tgaccgcttg cagcggttta gcctatgcca atacagcaga
    12961 tttgccgcaa ggtgaaaggg tgcgtgtcgg gacggcaacg attgagcgca caaccgataa
    13021 aatgaccgtg aatcaatcca gcaataaagt acaaattgat tggaacagct ttgatattgg
    13081 taagaataaa gaagtggaat tcaaacagcc gacagagatg gcggtggcat ataaccgtgt
    13141 taccggcgga aacgccagtc aaattcaagg caagctgacc gcaaacggca aagtgtattt
    13201 agccaacccg aacggtgtac tcatcaccaa agatgcggaa gtgaatgtgg gcggtttgtt
    13261 agtgaccaca aaagatttag aaaaaatcag cgaaaacggc acaaaagata aattcagtcg
    13321 caaattagcg aaagaaggca aaattcttaa ccaaggtaaa attacggcca aaggcgagcg
    13381 ggcttttgtg gtattggtgg gcgacgatgt ggctaatgaa ggggaaatta acgccaaaaa
    13441 ttattaccac aaagaaacga aaaaagtcac cgaatgttat gacgattctt ggagcttggt
    13501 aaaacaatgc tacgattttg ataaagaaat cgtgaaaagt accagtggag aagtgcattt
    13561 atcctccgga gaaaatgtca cctttacttt aagcgaccgc tatattgatg tggcgttaga
    13621 cgataatacg gtcaatagca ttatcaaaaa tgacggggca atcatcgcca atggtgacat
    13681 taccctcact gccaaagggc gaaatcaagc cttagacagc ttaattatca ataacggcgt
    13741 attgcaagcc aataaggtgc aaaataaaaa cggtacgatc attttatctg ccggtgaaac
    13801 ccaattacac gaaaaaagcc aaattaaagg cgagaaagtg agctttgccg aagcttctta
    13861 ttacggtccg acagaagaca ttaaagtggt ttccaaaacc ggctcaaaag tgaccgcacc
    13921 tgtgatcgat ttcaaaggta aaaccgtgaa tattcaaggg gaatttgggc gtgaagacag
    13981 caccgatctc tataacgatg aactacaaat cctcaaaacc acggtgaata ttgaagtccc
    14041 gaatacggaa gatattcgca ttgcagatac cgacaacgga ggtagcggtt cctttataca
    14101 agcgggtgct ttagcctcat tacttgcaaa taacggacgg gttaatgtac agggcaaagg
    14161 ttttgatgtc tcaggcaagt tgaatgtgaa tgcctttaaa caaacggatt ccgtgctgaa
    14221 atttatcaat caggcgggca tcaatatcca caatgccgat attcacgcaa acgggcgttt
    14281 attctttgtg acaaacttgc cgaatgacac cgatttccaa tcgaatatcc gcattaccga
    14341 cagcaaaatc aacttaggca acggctcaat gggctttggt cgcagtagca aacgttggga
    14401 aatgcacgat gtggttcgac gtgccgatac ggaactgcgt aaaaaattca atctggatat
    14461 gaaaaacgtg gaattaaacc aagtggatga ttttgtggta gcgggcggtt tccaacaagt
    14521 taatttggat aacgtgaaag cccgtggcaa aaccaacttc tatctggatt ccggcaactc
    14581 ccgcatgttt gtcggtgagc agatttatga atatggcgta accgatattg aaaaacgcac
    14641 ccaattggcg aatttagacc agcgtagaaa acgttggaat tcggataact atgatgagac
    14701 cgatctcaac tgggaataca accaacgctt tgacggcttt gcagcaaaac acaatcaccg
    14761 cgcgccgatt gccgatacgg aaatcaatat tgccaatagt gatatcagct tagataacgg
    14821 ttttgtgcat ttaatggcag aaaaaatcaa tctggacgac agcaaaatca atatcacctt
    14881 caaccaagac aacagcttgg atgaaagtac ccaaatcaac cgcttaggac taaacggcaa
    14941 agtgtcgatg aaaaacagcc atattaacgt agtgggcgat gaaaaagacg gtatctcacc
    15001 ggctcgccat tatgccacga tgttcttagt gggggagctg cttggtgaaa agagttctat
    15061 tttcctcaaa tcccaccaag gtgcagtatt gagaaccgac agcaatgtta caattgccgg
    15121 taaaaacagc aaagacgacc tcaaaattac cgccattacc accggtaaaa aaatgggcaa
    15181 tgaaatcatc ggaccggacg gcttgccaac ctcggaagat aacgatgcca acgccagcaa
    15241 caccgccttt gccatcggct atgaacctaa cgctacggct atcgtcgaaa atgcaagcat
    15301 taccgcatta gcaccaaacg gcggcttggc atacaccggc acgtctaaaa cccaaattga
    15361 cgcgaaggat aatgctacct ttaccttctt tgaaaaacct cgagccggct atgacaaatt
    15421 gcttggcgac atcaaaggta accccgataa attaacccca cgcgatttcg cccgtttata
    15481 cgacaacatt aaaggcatca aagccagcag cctatccgaa caacagcttg gcctagcaga
    15541 caccgcgaag aaaaccagcg aacacacctt agcaaacagc ctagacgtag aaaatttggt
    15601 ttcagtgaca gtgtgtgatg agcagaataa gtgtgaggag cgtatgttag gtaacaaaaa
    15661 taccaatgct aaagttattg tcggagatat caaatttgag tagcgttgaa gaaagtggta
    15721 gaagctcaga cttgatctga taaagcacta taaaaagtga gagtttcccg tttagaatat
    15781 gagtgtcaaa attcaatcta aacaaaaagg aaactctcat gttttattac ttacaatccc
    15841 ctcattaaac acaagaccgg tttattaaat ttagcagaag aaccgggcaa tatctctcaa
    15901 gcctgcaatg tggtgggtat gagcctagat acattctatt gctatcaaca agcggttatt
    15961 tttggcaact aatttgcaaa aaaacaataa aatccgaccg cttgtagagg gttaatccgc
    16021 ccttagtgaa atttcaccga tgccgaaata gcggaggttg tcgccctgtt ttagaatgag
    16081 ttcgccctgc tcgttaatgc cttgcgaaat gccgtggatt tcttcggctt cggtaatgag
    16141 cttaaccgct ttatggcgga aaaggtcgaa actttgccag cgttcggcat aatgagcgaa
    16201 gccgacaagc ggataaattt tgagattttt ttgcaattca taggctaaac ggcaaaccaa
    16261 ttcgttgcgg ttgaaatgat attgcgataa atctgcccac gcttgcgtca caatattttc
    16321 atccactttt gccattccta ggttcagccc aatgccgata accacatcta aaccattgcg
    16381 attggcttgg gtttccaaca aaatgccccc catttttttg ccttggtaat aaatgtcatt
    16441 cggccattta atttgaatat cttttacatt ttgaacagta aggctttccg caatgatcaa
    16501 ggctaccact aaacttaagg gcggtaaatc tgccgcctgc tccatcgggt aatgccataa
    16561 aatcgagaaa tagagatttt cactctcggg cgaataccaa gttcgacctc gtctgccacg
    16621 tccggcagtt tgtttttcag cgaggcaaac cgtgccgttt tccaaacgtt ggtgatgagt
    16681 gagcaaatat tcattggttg aatcaatttc atcgaacaca acggcttgcc cgcaaattaa
    16741 agcattttgg atttgagctt ggttaagttt cattatttcc ccacttagcg agtgattttt
    16801 tcgctatcga cctcaccgtt tttaccgata aaacgcactt caggctgaat ttctacccca
    16861 aatttttctt tcactctctg gcgaacggtt ttggctagag ccaagacatc ttgccctgtt
    16921 gcattttctt tattaatcag cactaaggct tgctgggtat gtaccgccgc tccgccaatt
    16981 tgtaagtctt tcagcccggt ttggtcaatt aaccaacctg cggctaattt taccgttcca
    17041 tcagcttgag ggtagtgagg aatggctggg aatttggctt gtattggtgc aaattgttcg
    17101 tttgaaatca ccggattttt aaaaaagctg ccggcattgc caaattcgtc agggtttggc
    17161 aatttggagg agcgaaccgc acagacttca tcaaaaatct gtattggcgt aacggtttcc
    17221 ggattgagtt gggctaatga tccgtaactt agcaccggtt tccacgcttt ggctaacttt
    17281 aagcctaccg agataatcgc aaattcatca cggtattggt gtttaaacac actttcacga
    17341 tagccaaatt cgcactcgga tttggatagc ttaaagagtt ctccggaacg taaatttaac
    17401 acttccacga aatcacatac ctgttcaaat tcaaccccat aagctcctat attttgaatg
    17461 ggagcagagc tggcgacacc cggaattaac gccagatttt caatgccggc aatattgtgt
    17521 gccaacgtcc atttaaccaa ttcgtgccag ttttccccac cttgaacgtg caaatagtgg
    17581 aaatgttcgt cttcgtggtg cgtaatccct ttgagtttat ttactaacac cacaccgtca
    17641 aaatcctcta aaaacaaaac gttagagcct tgcccgagaa tcaagattgg cagttgagcg
    17701 ttaaaggctt tttgccattc gctcaatagc tgttcgactg tggtaaattc aataatttgg
    17761 gtcgcttttg caggcaaatg gaaagtgtga aaaggggtta agctatgttt catcatcaaa
    17821 ttagttagtt aagaagtgga aataacaagc ggtgatattt ttacaaaatt ttgcaattaa
    17881 gattttgggc aggcacagga tctgccccta cattcagaat taccttgccc catataccac
    17941 aatggttttg ccgtgagcag aaattaagcc ttcgtcttcc aacattttta taatgcgtcc
    18001 aacggtttca cgggaacaac cgaccatttg cccgatttct tggcgggtaa ttttgatctg
    18061 cataccttcc gggtgagtca ttgcatccgg cattttagct aagttgagca aggtttgagc
    18121 aatgcgaccg gcaacgtcta aaaaggcaag attaccgact tggcgtgaag tttgacgtaa
    18181 acggcgagcc atttgtgccg ataaatacat taaaatatcg gggtttaaat ggactagttg
    18241 tttgaatttt ttataggaaa tttccgcaat ttcacaagga cctttagtgc ggacgtaagc
    18301 ggtacgttgt tggacttttt cttcaaataa acttaattca ccgacaaact cacctgtgcc
    18361 taagttagtt aagagcatct ctttggtttc atcatctttg atgtaaaccg acactgagcc
    18421 attcacgatg tagaaaagtg attctgcatc ttcaccggcg tgaatgagtg tatatttcgc
    18481 cggataacga tggatatgac aatgggttaa aaaccactcc accgcagggt cgtgaataga
    18541 gggcggagga gttacatttt ccagaggagc tgttgaaagt gtcatatctt gcatagtatt
    18601 tcctataact cttatactag gttaaatttt tagaatttta acacgaaatt aaaggttagc
    18661 ctaaaaaaga ttttttgtct ttaatatcaa ggctttcgtg taattccgac caaacaatca
    18721 ccactttatc tgccttaagt tgtgtgagta atcgttctct tttttctgcc agagaaagtt
    18781 ccctttcccc gtagtctgtg ccttctcgta aaatgaagga atctaaaata ttatgtaagg
    18841 ttgattcttc gagttcttgc caaggtataa tcataattaa tcaaataaag gcttaataaa
    18901 tgcccactgt ttttcaaaat gttggtgttg gttatagctg aaattagaac gaaccaagcg
    18961 taaaaattgc ccttcgcaga aattcactaa ataaccggct aaggctcttt cgtcttcaaa
    19021 gctcttgcgt tcacgcagtt tactaagttg caaaatattg gcaaattgta actccaagtt
    19081 atcaaagaat tttgccactc gagctttgag caactcctct tcaaacatca aggcgtgtcc
    19141 ggtcaggatg cgggtaacgc ccgggttttt gcgagcaaat tctaaaatca catataaaat
    19201 tgctcgcacc gaattggcac tgctgtcttg gcgtttattg gcgtgaatat agctggtgag
    19261 ggtctgctcg attttctcga ttaacgcttc aaacatcttg gttttacttg ggaaatagcg
    19321 atacaacgcc ccctccgaca cccccaccgc agcggctaaa cgctcggtag tgatacgctg
    19381 cattccctct tcagaattta acaagctgat taacacttcc aacacttgtt ggcggcgttc
    19441 caccactgat tttttcggca ttttaatttt aggttctgtc attgccaatc ctattattgc
    19501 ttacctgaat gcccaaaacc gccttcgcca cggtcggtct gctcaaactc ttgcacaatg
    19561 ttaaaacttg cctgaaccac cggcacaaag actaactgag caatacggtc gcccacgttc
    19621 acggtaaaat cagcttggct acggttccaa agcgacactt tcagctcgcc ttggtaatcg
    19681 ctatcgatca agccgactaa gttgcctagc acgatcccgt ttttatgccc taaacctgat
    19741 cttggtaaga tcaccgctgc caaattcgga tcggcgatat aaattgaaat ccccgttggg
    19801 atcaacaccg tttcacccgc ttttaccgtc agcggctcgt tgagcatcgc ccgtagatcc
    19861 aagcctgccg agccttcggt cgcatacgca ggtaatggaa attcattgcc gatacggcta
    19921 tctaaaattt ttaaatcaat ttgtttcatt ctttttcctt tttgtaaatt tttaaaacta
    19981 tattattcag ttataaaagg ttttaattgt atcgttccaa gtggaagttc agtcaatatt
    20041 tcccagcttg tgttgtggta aaatcgaaat aaacttgcaa cgttttcaac gtagcttgaa
    20101 ttaaatttac cttctaatgg ctttattcct ccagtaaaat gaattatatg tggaatataa
    20161 tttggcgaaa ttttttgctg ggcaatatca tctaataaat gttctgtctg ataattatat
    20221 tttcgatcta actcaatcca attatattga aagcagtaat taagaatatc ttgatcccca
    20281 aatggtaaat tttctttaaa tctctcagta agctgtataa atggttgctt actaaaatgc
    20341 tttgcattta gataaaatac accagcattg aaatagtttt tgtaaatata gggatgattt
    20401 tttagtttgt ttacataagg atcagcaatt gcagcaatac ttccaaaaga aaaatctagg
    20461 tttgtaaatg gatccgtaat atttccatta accacaagat cgcaatctaa ataaatccaa
    20521 tatgggctat cgctgtgttc a
//
LOCUS       DANMGB010000027        19916 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.027, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000027 DANMGB010000000
VERSION     DANMGB010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19916
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.027"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(87..725)
                     /locus_tag="PXG19_000732"
     CDS             complement(87..725)
                     /locus_tag="PXG19_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL6066055.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(813..1760)
                     /locus_tag="PXG19_000733"
     CDS             complement(813..1760)
                     /locus_tag="PXG19_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL6066056.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(1777..2622)
                     /locus_tag="PXG19_000734"
     CDS             complement(1777..2622)
                     /locus_tag="PXG19_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6066057.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(2634..3905)
                     /locus_tag="PXG19_000735"
     CDS             complement(2634..3905)
                     /locus_tag="PXG19_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL6066058.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(3908..4387)
                     /locus_tag="PXG19_000736"
     CDS             complement(3908..4387)
                     /locus_tag="PXG19_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6066059.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(4448..5431)
                     /locus_tag="PXG19_000737"
     CDS             complement(4448..5431)
                     /locus_tag="PXG19_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6066060.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(5460..6485)
                     /locus_tag="PXG19_000738"
     CDS             complement(5460..6485)
                     /locus_tag="PXG19_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6066061.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            6649..7410
                     /locus_tag="PXG19_000739"
     CDS             6649..7410
                     /locus_tag="PXG19_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL6066062.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            7440..8624
                     /gene="uxuA"
                     /locus_tag="PXG19_000740"
     CDS             7440..8624
                     /gene="uxuA"
                     /locus_tag="PXG19_000740"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL6066063.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            8675..9544
                     /locus_tag="PXG19_000741"
     CDS             8675..9544
                     /locus_tag="PXG19_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6066064.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            9712..10026
                     /gene="rsfS"
                     /locus_tag="PXG19_000742"
     CDS             9712..10026
                     /gene="rsfS"
                     /locus_tag="PXG19_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL6066065.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            10103..10570
                     /gene="rlmH"
                     /locus_tag="PXG19_000743"
     CDS             10103..10570
                     /gene="rlmH"
                     /locus_tag="PXG19_000743"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL6066066.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            10594..12543
                     /gene="mrdA"
                     /locus_tag="PXG19_000744"
     CDS             10594..12543
                     /gene="mrdA"
                     /locus_tag="PXG19_000744"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL6066067.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            12536..13663
                     /gene="rodA"
                     /locus_tag="PXG19_000745"
     CDS             12536..13663
                     /gene="rodA"
                     /locus_tag="PXG19_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL6066068.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            13755..14414
                     /locus_tag="PXG19_000746"
     CDS             13755..14414
                     /locus_tag="PXG19_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL6066069.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            14428..15606
                     /locus_tag="PXG19_000747"
     CDS             14428..15606
                     /locus_tag="PXG19_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL6066070.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            15774..16073
                     /locus_tag="PXG19_000748"
     CDS             15774..16073
                     /locus_tag="PXG19_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL6066071.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            16135..16788
                     /gene="lipB"
                     /locus_tag="PXG19_000749"
     CDS             16135..16788
                     /gene="lipB"
                     /locus_tag="PXG19_000749"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL6066072.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            16803..17810
                     /gene="lipA"
                     /locus_tag="PXG19_000750"
     CDS             16803..17810
                     /gene="lipA"
                     /locus_tag="PXG19_000750"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL6066073.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            17997..19100
                     /locus_tag="PXG19_000751"
     CDS             17997..19100
                     /locus_tag="PXG19_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066074.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(19191..>19916)
                     /locus_tag="PXG19_000752"
     CDS             complement(19191..>19916)
                     /locus_tag="PXG19_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6066075.1"
                     /translation="SVVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTI
                     DFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEA
                     VDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINL
                     LEYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDS
                     IMSILRFYMMETARRLSARFANV"
BASE COUNT         5940 a         3836 c         4319 g         5821 t
ORIGIN      
        1 tatgcaatat ttgttatgct ttgtaaataa gaggaaagag atccattttg ggtagaaaat
       61 agctcattgc ttggaacttt aaatggttat ttcaccaatt caaccacttc cttcgtcaat
      121 ttcccaatct cctcccactt ctgttcctta atcagggatt tctccacaaa ccaagagccg
      181 ccgcaggcga ctacgttggg aatggcgagg tagtcgttga tgttttgtgg cgagatgccg
      241 ccggtcggca taatctgtaa gttgccgtaa gggccgagca gggctttaat cattttcacg
      301 ccgccactgg cttcggcagg gaaaaattta actgcttgta tgccaagttc gagggcggct
      361 tcaatcgcca tcgggttgtt cacacccggt gtaacaggca aacctaacac ttggcaatac
      421 ttaacgatag tcggattaaa acccggagtc acaatgcaat ccgccccagc gtttttggca
      481 gttaagactt gctctttggt cagcactgtg cctgctgcaa tcaatacttc cggatagttg
      541 gcttgcacta atttaattgc ctcttcagct gcttccgagc ggaaagtgat ttccaccacc
      601 ggcaaaccgt tttcggaaag ggttttcgcc agcggtaaaa tatcttctgc tttatccaaa
      661 gcaatcacgg gaacaacttt cagttgtctt aatttttcaa tgatttgttc ggtggtgtaa
      721 cgcatttcta gcctcattat gttgtattgc aagcggtcgc ttttgtaaaa aattttgcaa
      781 atttaaccgc ttgtcgttgt gctattgttg gtctaaatgg attgttcaaa ctgcgatttc
      841 aaatgagtag tggcggattt ggcaataatc gcccctttgt gctgaatgac gataccggca
      901 acggcatttc cttgttggca acaggtaacg acatctttac ccaataagta accgttaagg
      961 aagccggcat taaaggaatc gccggcggaa gtggtatcga ccaccttctc taccgcaaca
     1021 gttggcacaa aagtacgctc cccgttttgc aacaccgttg cccccagaga gccttgtttc
     1081 accacaatgg tctgaatgcc atattgagtg agacggtcaa aggtggcttg ctcattcaca
     1141 tcgccccaaa gcagttgctc gtcatcaaag gtcacgagag ctaaatcgac taattgcaac
     1201 agctcggcat agtgagcttg ggcagcagcc acactttccc acagtttcgg ccggtaattg
     1261 ctgtcaaagg cgattttcac cccttgtgtt ttgagctcac gcaactgtgc aatcagcaaa
     1321 gtgcggtcgt tttccggcaa gatggcaagg ctgataccgc tcaagtaaac catatctacc
     1381 tcgtttagtg ccgagagtgc tttgggatag ccggggtgtt gcaacaaata acgggcggca
     1441 gattgatttc gccaatagag gaacgttcgc tcgccctgtt tatccaactg aatcagatac
     1501 agccccggct ggcggtgctc gtcacgcaac acaaaatccg tgttgatatt atccacctgc
     1561 cacgccgcta acattccctg actgagctta tccgtgccga gagcggaaat ataacgcacc
     1621 tcaatctgtt caggcgaact cacccgagcc aaataggtag cggtgttgag cgaatcccca
     1681 ccataggttt ggtgcatctc cccaaacggc tccccgttta actcaatcat acattcaccg
     1741 agaatggcga gttttttcat aggaatacct tctaagttac acgccgctat aagcagagaa
     1801 tccgccatca acaggtaata caacgccatt gataaagctg gaataatggt gatccattaa
     1861 aaataggatt gcacctacca attcatcggc ttgtccgaaa cgtcccatag gggtattcgt
     1921 gaggatttta ttagctctag ctgttggcgt accatcggcg ttaaatagta gagctttatt
     1981 ttgattactc actaaaaatc ccggtgcaat agcattacag cggataccta cttttgagaa
     2041 ataaactgct aaccattgtg taaagttact gattgcagat tttgctccag aataggcagg
     2101 gattttagtt aatggagtaa aggcattcat actggatata ttaatgatat tagcgccctc
     2161 tttacccaac atatcttttg cgaaaacctg tgttggtaat agtgtgccta agtaatttaa
     2221 attaaataca aattcaatcc ctgctttatc taattcaaaa aaagattttg tattttccgg
     2281 taagttaata tcgtgaaatt cattatctgt cgttgctttt ggattattcc cacctgcacc
     2341 attaattaaa atatcacaag tgccaaaatc ttttagaatt tcatctcttg cctgttttat
     2401 gctttctaat tcaagtacat tagtttggta cgctttcgca atatagcctt catcggcaat
     2461 ttcagaagca aaattctgtg ctgcttctag attgatatcg agtagtgcaa cttttgcacc
     2521 tgtttttgca atttcttttg caaaataagc acatagcaca ccacctgctc cggtaataac
     2581 aacaacttta tctttaaaat tatgattttg ggcaatagac ataataagaa ctcctaagat
     2641 aaccaattca ttggtacgat aataatttca gggaaaagta ttaataagaa cagtattgca
     2701 gcatagacta gcaagaatgg atagatacct ttggttaatc tagcaatacc aatttttgct
     2761 ataccagaac caacatataa taccgttcca acaggaggcg taattaaacc gatagatagg
     2821 ttaattacca tcataatacc aaagtaagca atatcgatgt tatacgctct tagtaatggt
     2881 aatagtactg gtacaaaaat taatactgct gggattaagt ccattacaca gccgactaat
     2941 aataagaaaa tcataatgac gaacattagt acagtcgggc tatcggtaat acctttgata
     3001 aactcaacta actccatagg tatttgagca acagtaactg caaatgcaga tatcattgcc
     3061 gccgctgcaa caaacataac cattgcagtt gttttgatag tgcctaagaa aacatcttgg
     3121 attttatcta aggttaaccc ttttaagata atgctgatta ttgctgcata aattgctgct
     3181 acaactcccg cttctgttgg tgtaaagatg ccgcctctta aacctacgat aataataatt
     3241 ggaagtagca atggtaagaa tgctgattta aatgcagccc aacgttcttt acctgttttt
     3301 ttcggttcaa cggtttgttc ttcgtttcgg tataagaatt tccaaactaa ccataaacct
     3361 aaaaccatta aaaagcctgg aaccattcct cccataaata atttggtaat tgatgcaccg
     3421 gctgtaatac catagacaat cattggaatg cttggtggga taactacaga aataatacct
     3481 gctgcacaga ttaagcctgt tgaacgtgca acatcatatt ttcttgcaac catcatcgga
     3541 ataagaattg caccgagagc cgcggtatca gcaacagcgg agccggataa acctgcgaaa
     3601 attaagcctg aaataatcac tacatagccc aatccgcctt taatatggcc gaccatgctc
     3661 attgcaaaat tgataatacg ttcggaaata ccgccgtgtt tcataatttc accggtcagc
     3721 ataaaaaacg ggatagccat cagcggaaaa ttatttgtac ccattacgaa attctccgtg
     3781 attaattggg catcaaacat atccattttc catagcataa aactggcact aagtagcata
     3841 gagagagcaa cgggcactcc taaaaagaga aagaggaata gacttcctaa aaatagccat
     3901 aacatattta tttctcctct ttaatgaaag ctagccgaat atgtttccat aaatttgtga
     3961 atacaatagc gaaataggag atagatgaaa taactgctgc aaaatataga aacgcagatg
     4021 aaatttcagt tgctggcatt ttttgtgtgt atgtcaataa cattaactgg tatgcaccgt
     4081 aagtaataaa tgacagtgca actaagacta aaatatcagc aaagaacagt aagtacattt
     4141 gtacttttgc cggtagtgca gaaacaacaa tatcaacggt gaggtgtccc ctttcctttg
     4201 caacgaggat tattcctaga aagatcatat agacaaagca gattctggcg aattcctcag
     4261 accaagctat tccggagtca aaaaaatatc gtaaaaccgc attaaaaaag actaggataa
     4321 tcattgtaga tagagcaatt atcgcaagga gtttgagagt tctatctaat gctgtagaaa
     4381 tttgcataaa tttctccttc ttcatttaga tgggcgacct cttttatccg gtcgcctcgc
     4441 ttattgctta tttggctgcg tggatttttg aaataacatc tttagcccaa tcatatttct
     4501 gatagaaatt ttgataaagc gtttcggatg cttttaacat atcagcttta aattgttcac
     4561 tcggaacaat gacttctttg ccatttttgt ggaagaaatc ttttacatct tgttccatct
     4621 tcatcgctaa ttcccactct ttttcttggt agagttttgc tgcctctaag aagattgtct
     4681 gatcttcttt agacatttta ttccaagttt tcaaactaag ttgtagtaag ccaggtgaga
     4741 aaatatgatt agattcaata atatattttt gcacctcgta taaaccagaa tctttaatta
     4801 acatatatgg attttcttgc ccatcaatga ctttttgttc tagtgcggta aatacttcac
     4861 ttaaaggcat actttgaggg ttaatatgca ttgcttttgc ccagtccaca aacaacgaat
     4921 ttagtggaac ccttaatcgc aaacctttaa atccatcaaa attctcaact tttttattgg
     4981 aagagataac acggaagcca ttcataccat acgctagtaa tttaatgccg tacttctcca
     5041 ttttttcccc gatttcttga gcaataggag attctagaac tttcttagct tcggcattat
     5101 ctttaaatag atatggccac tcccatacgc caaaaattgg atcaacattt tgtagtaata
     5161 aacctgtaat gccaccttca atcgtgccat tacgcaaacc atttacaatt tgatcttctc
     5221 ctcccaactg gttatttggg aaaatacgga tttcgtagcg tccttctgtt ttttcttcaa
     5281 tggttttttt gaagtattcc tgcaatgcga tatttgatgg atgaacatct gaattatagt
     5341 gaccaatctt aatgatagtc ttcgcaaatg ccgaaccggt gaacatcagg ctagaaatta
     5401 atagagcttt agtgaaagtt ttgagtttca tagttattac ctcgtaggtg agttagtatt
     5461 taaaatacag cgatgatttt taagtaatca tcaggattag ctgagagttc ttcgatatag
     5521 tgaggtattt catcaaatgt aattacctta ctaatgatat cttttggttc aattcttctt
     5581 gatgccagaa gctctaatgc ttcttcaaat gcccccttgc ttgttcttgc cccataaata
     5641 ttaagttctt tgaaggtgat taaattagtt ggtaatggtg tttctgtttt cggccatccg
     5701 gttaaagcaa tacgtccagc aaaagaggtg tatttaagcg tattttgtac tgcgacattt
     5761 gctcctgacg cttcaataac cacctctgcc attcttccat tggtaattga tttaatagct
     5821 tcaagatcgt tttcttttgt tggattaatt gtgtgtggaa taccaataga ttttgcgtaa
     5881 tccaatcgct tatctaaaat gtcaattaaa atcggcgtcg ctccataagc tttggcaacc
     5941 aatgcagcca ttagcccaat tgcccctgct ccaatgatag caacatgttc accagctttg
     6001 acttttgttc tatgaattgc gtgtaaggaa atagttaagg gttctgctaa cgctaattcg
     6061 tgtattggca tatcaggtgt tttgattatc atatgggctg gatgtctaac aacctcttgc
     6121 attgccccat caatatgtac ccccaatact tttagagatt cgcaacaatt tgttctacca
     6181 atggagcagg gatagcaatg tccacaatag atgtaaggtt caatgatgac acgatctcct
     6241 acattaatat tatttggcat acctttacca gactcaatta ctgtgccaac gatttcatgc
     6301 cctaaaattc taggataagt aacaagtgga ttagtgcctc taaatgctcc aatatcagag
     6361 ccacatatcc ccataccttc tactttgatt agcacatcat tttcaccttt aacaggataa
     6421 gaaacggttt gtataccaac tttattaggt tctacaagac atactgattt gagtggtttt
     6481 tccatgattt tgtccttttt tgataaagtt aatcgacatt ttgtagtgtc aatggtattt
     6541 tatgcacaga tactaacacc aaaaaacaag tttggcattc caatttttgt gattttgtga
     6601 acctgatcac aaaaatgaaa ttttggaatt ccaatttcgt gaggatttat gcaaaatagt
     6661 tccagaactt acactaaaat aggaaaaatt ctcaaagagg aaattgctca aggaaaatac
     6721 agagtaggag ataagttacc tactgagaga gatatttctg aaagatttga agtgagtaga
     6781 actatcgtaa gggaggcgat agtgatgcta gaagtagaaa agcttattga ggtaaaaaaa
     6841 ggatcgggcg tgtatgtcat tagagtcccg gagctttttc cagaagattt tccagaagag
     6901 aaagataatg agctaaggga tgttgggcca tttgaactac ttcaagcacg acaattatta
     6961 gaaagcagta ttgctgagtt tgcagcacag caggctacca aacaagatat acaagtactt
     7021 cgtaacatat tagaaagtga gaagaaactt ttgttagaga agatggatga ctacagtgca
     7081 gataaggaat ttcatcttgc attagctcat atgacgggta acgatgttct gattcaatta
     7141 caagaacagc tttggcgata ccgctttaat agtgcgatgt gggctcagct acactccaga
     7201 attttacagc atgatcatca ccacttgtgg atagaggatc atgagcgaat tttaaatgca
     7261 atacagagaa aaaatcctgc attagctcgt aaagcaatgt ggcaacatct agaaaatgtt
     7321 aaaactaaat tgcttgaatt gtctgatgta gaggatccta aatttgatgg atatctattc
     7381 aatgtaaacc ccgttgtagt aggtatctaa aacctaaact acacaatgag gagtttacta
     7441 tggaacaagc atggcgttgg tatggaccaa acgatccggt atctttagat gatgtaagac
     7501 aagcaggggc aacggggatt gtgacagcgt tgcaccatat tcccaacggg caggtgtggt
     7561 cggttgagga aattaataaa cgtaaggcat tattagctga aaaagggctg gtttggtcgg
     7621 tggtagaaag tgtgcctgtt cacgaagaaa tcaaaactca aacaggcaac tatcagcaat
     7681 ggattgataa ctataagcaa accttgcgta atttggcaag ctgtgggatt gatacggtgt
     7741 gctataactt tatgccggtg ctagattgga ctcgtaccga tctggagtat gaaatgcctg
     7801 atggctcaaa agcattgcgt tttgaccaag tggcgtttgc ggcgtttgag ttatatatct
     7861 taaaacgccc gggagcggaa gccacttact catcagcaga acaagccgaa gccaaagcct
     7921 attttgagca gatgagtgac gctgatattg caaaattaac caaaaatatc attgccggtt
     7981 tgccggggtc tgaggaaggc tatacgctcg aagaattcca agcacagctt gaccgctatc
     8041 aagggctctc ggctgaaaaa ttccgtaccc atttagccta tttcttaaat gagattgtgc
     8101 cggttgcaca agaggtgggc attcgtatgg cgattcaccc tgacgatccg cctcgcccga
     8161 ttttaggctt gccacgcatt gtttcaacca tagaagatat gcaatggttt gtggaaactc
     8221 aaccgcttgc agccaatggc ttcacgttct gtaccggttc atacggcgta ttagccgaga
     8281 atgatttggt caaaatggca gagcagtttg cagatcgcat ttattttgct cacttacgag
     8341 ctacccaacg tgaagaaaat ccacaaagtt tccacgaagc ggatcatctt gccggtgatg
     8401 tcgatatgtt tggcgtggtg aaagcattac ttaccgaaga gtatcgccgc aaggcaaatg
     8461 gcgatcaccg attaattcca atgcgtccgg atcacggcca tcaaatgctc gatgatctga
     8521 agaaaaaaac caacccaggc tattctgcga ttggtcgttt aagaggatta gcggagttcc
     8581 gtggattgga gttggcactt aagaaagtct attttaacga ttagccttat ttattataat
     8641 gccctctact gtagagggca ttttatagtt tgatatgttc aaaaaatatt tcggcgaaat
     8701 aatccttttt ctcgttacct ttattgctgc agcggggtgg tttttctcta aacacgcttt
     8761 agttggatta ccgcctattg gctttatggg agggcgtttt atattagcct ctttgattct
     8821 tctgcctttt tcttaccgag agctgtatcg tttagataag gttcaagtta aatattcggt
     8881 gattaccggt cttacttacg gaatttatac tattttttgg gtattggggc tggcttttag
     8941 tacagtgttt ggtgaagggg cttttttggt gagccttgcg atgctgattg ctcctttgct
     9001 ctcttggttg atattcaaac atacgccacc gaagattttt tggttagcct tacccattgc
     9061 attaagtggg ctttactttc tttctgcgga gaaaggcatc tttcattttt ccttaggcag
     9121 tacgattttt ctggtgtcat cagtgtttgg ggcgttatat tttgtgttaa ataatcaata
     9181 cgccaaacaa gtctcattgt ttccattaat tactatccaa ttggcgatag tcggtgcggt
     9241 ctgtagcttg tattcctatt ttatggaaag ttggcatttc ccgattctca ccgaagtgtg
     9301 gctctggttt gccgcaagtg tattgattgc gacaaattta cgttttttaa tgcaaacact
     9361 ggggcaaaaa tattgccata ttggtacttc tgcactcatt atgttacttg agccggtttg
     9421 gacattgtta ttgagcgtga tgttattggg ggaacaactt agtgcgacaa aatggctagg
     9481 ttgcagcttg attttgatag cattgattat ttatcgactc cctattctac gactcaaaaa
     9541 ataggtaaaa caaaagcaaa tatgccatag tattggaagc agttaggcat tttagagtaa
     9601 gtaacaagcg gtcatttttg caaaaaatct tgcaaaaatg accgctttct ttcttttatc
     9661 cgttcaatct atgttaaaat tctacatttt tataagatga gagagagaaa cgtggaacag
     9721 aatttagtcg aatttttaac caaaacctta gatgatttaa aggcacaaga tattttagcc
     9781 attgatgtga aagggaaatc tagcattact gatacgatga ttttagccac cggtacatcg
     9841 agccgtcacg ttgcttcaac ggcagagcgt ttaattacgg aagcaaaaca ggctgggttc
     9901 gaggtatttg gagatgaagg taaagcagtt gccgattgga tcgtggtcga ttttgggaag
     9961 gcaatggttc acttgttgca atccgatagc cgtgagatgt accaattaga gaaactttgg
    10021 gcgtagcagt tcaataagga acgacaagcg gtgatttttg caacattttt tgcaaattaa
    10081 accgcttgta agtgaaagag agatgaaaat tcaattaatt gcggttggca ctaaaatgcc
    10141 ggcgtgggta acgacagggt ttgaagagta tcaacgccgt tttccgaaag agatgccgtt
    10201 tgagttggtg gaaattccgg caggaaaacg gggcaagaat gctgatacta aacgcattct
    10261 tgagcttgaa ggcaaagcaa tgttggcggc agcgggcaag gcaaaaatcg tgactttgga
    10321 tattccgggc aaagcgtgga caaccgagca gttagccact cagttagagg gctggaaaaa
    10381 cgatgggcga gatgtagcgt tattgattgg cggcccggaa ggattatcac cggaatgcaa
    10441 agccgctgcc gagcagagtt ggtcgttgtc gcctttaacc ttacctcacc cactggtgcg
    10501 ggtggtggtg gcggaaagtt tgtatcgggc gtggtcggtt accattaatc acccttatca
    10561 tcgagagtag tgagtcattt tagatagtgt tatatgtttg gtaaattagc aaaattcaca
    10621 gcttcaaacc agcgagaaaa ggtgcgagac gggcaggcag aaagcaatct gtatgcccgc
    10681 cgtgccttag ttgcgtttct gggggtgttg gcgttaagtg gtgttttatt aaccaacttg
    10741 tatcacttgc aagtggtgaa ttatgaggac taccaaaccc gttcaaacgg taaccgcatt
    10801 aaattgttgc ctgtgccacc ggctcgaggc ttaatttatg accgtaacgg taaagtattg
    10861 gcggaaaatt taacctattt cgggctgttt attgtgcctg aaaagacgga aaacattgag
    10921 cagactttaa ccgagttgaa ggatattgtt gggctgacgg acgaagatat cgagaattat
    10981 cataaagaga aaaaacgcag ttctcgctat accccaatta tgctcaaagg caatttgaat
    11041 gaggctcaga tggctcgttt tgcggtgaac caataccgtt ttccaagttt agatgtgcag
    11101 gcgtattata agcggaatta tccttacggc gagcttttaa cccatattat cggttatgtg
    11161 gcgaaaatta acgaaaacga taagaaaaag ctgcaagaag ccgggaaatt cggcaattat
    11221 gccggttcgc acgatatggg gaaattgggg attgaaaaat tctatgaaga tcagctccac
    11281 ggtgtcaccg gttttgaaga ggtagaaatt aataaccgag ggaaagtaat ccgtaaattg
    11341 cgtgaccaag caggggttgc cggtagcagt attcgcttga gtattgatgt ggaattacag
    11401 caatatgtga tgtcgttaat tgctaagcat aaaggggcgg tggtggtgct tgaccctcgt
    11461 gatagcagta ttttagcgat ggtctcaaac ccaagttatg acaataattt atttgtgggc
    11521 ggtatttcag ggcaggatta taaagcatta ttggacgatc caacccgacc actttatagc
    11581 cgtactacac aaggcactta tccaccggct tcaactatta agccatttat ggcggtggca
    11641 ggtttggaag agggaatgat taccccttct accaccattt cagaccccgg ctattggatt
    11701 ttgcccggca ctacacaacg ttatcgagat tggaaacgta gcggacacgg tgcaactaat
    11761 gtgaataaag caattaccga atcgtctgat acctttttct atcaattagc ctataaaatg
    11821 gggattgata aaatgtcgga ttggatgaaa aaattcggtt tcggagtgaa aaccggtatc
    11881 gatatttttg aggaatccgc aggggtaatg ccaacccgtg aatggaaaca aaaacgctat
    11941 aaaaaacctt gggtgcaggg cgatactatt ccggttggga ttgggcaggg ctactggatt
    12001 tcgaccccgt tacagttggc gaaagccacg gcggtgttaa tcaacaacgg gcgggtgaat
    12061 acaccgcatt taatgcttga agtgcaaagc agtaattcgg ttacgccgta tcaagaccca
    12121 ttgttgtatg aagatattaa aggcgtgccg gatgtctatt ggaatttagc aaaacaggga
    12181 atgtataacg taaaccacgc cgcaaacggt acggcacgaa aagtgtttgc cggtgcattt
    12241 tatcattcag cagggaaaac cggtacggct caggtgttta acttaaacgg taaaaattac
    12301 gataaaaatg cgattaaaaa agagttgcac gaccacgctt ggtttatcgg ctatgctcct
    12361 tatgaacaac ctaaaatagt ggtggcatta attttagaaa atgcaggcgg tggtggtagt
    12421 gccgcggctc ctgttgctcg tcagattatg gattatgctt tgagaaaagg cattggtgaa
    12481 cagccggatt cgcaaaattc tgagcaaaat aaaccgcttg tcacagagga acatcatgaa
    12541 tagtggcttt aaaaaacttt tctggaaaat tttttcactc gatctccttt tattatcagg
    12601 attattagct attaccggtt atggtttatt agtactatat agcgcaagcg gtgcaaatga
    12661 gcggatgttt accagtagac tgattcaagt ttcgctaggg cttgggctaa tgttgataat
    12721 ggcaatggta cctcctcgct tttatcaaaa agtttcgcct tatctgtata ttttctgtct
    12781 gatattattg attttggtgg atttggtcgg cgaaaccagt aaaggagcgc aacgttggtt
    12841 gaatttagga tttgttcgct ttcagccttc tgagattgcc aagctcgctg tgccactgat
    12901 ggtagccact tatttaggta agcggccgct tcctccgagt tttaaagata cttttatcgc
    12961 cttagccatt attattgtgc caaccttatt ggtggcaatt cagcccgatt tgggaacatc
    13021 tattttagtg tgttctgccg gtatttttgt tttatttttg gcagggctaa gttggaaatt
    13081 aattggcgca ggtgtggtgt ttttagccgg ttttatcccg ataatgtggt ttttcttaat
    13141 gcacgattat caaaaaaccc gggtgatgac cttaattgat cctaataaag acccgttggg
    13201 tgccggctat catattattc aatccaaaat tgcgataggc tctggtggca ttaatggaaa
    13261 aggctggatg gaaggaacgc aatcccagct tgaattttta cctgaaccgc ataccgattt
    13321 tatttttgca gtgttaagcg aagagcatgg tatgataggt gtgctgattt tattagcgat
    13381 ttatttgttt attattgccc gaggtttagt gattggcaca aaatcggatt ctgctttcgg
    13441 gcgtatatta tcaggtggta cagcccttct attttttgtt tacgtttttg taaatattgg
    13501 tatggtgagt ggtattttac ccgtagtcgg tgtaccatta ccgcttttca gttacggcgg
    13561 aacctcctat gtgacgctga tggcggcatt tggtttgatg atgtcaacct atgttcaccg
    13621 taagcgtgta ggtagtaata atccttatga taaactgaaa taaattaaac ttttgctttt
    13681 ttgcggtatc aaaaagcagt gaaacgatca tcgttacaaa caataacgac atccacatag
    13741 aggaaaaaac ttatatgaga ttaggtaaaa ttgtaaccct gttgttagct ggatttctga
    13801 catttagttc attaaattct ttggctgcga caaagaatac aaaagctaaa tcgagtattt
    13861 tagccaagaa gcaagcaact tctaaagcaa taaaaaaagt aggtatttct aaagttaaga
    13921 aaaaagaagt agtggctaaa gctacaaaaa agaaaacaat ttctactgtt acaactaagc
    13981 cgattaaatc tacaaaaaag ctggctcgca aggttgtcaa gaaaacggta accgctaaga
    14041 aaaaattggt aaaaaagcag cataagccac tggtcaaaaa acatttccag actggtgttg
    14101 ccagctatta tgcaaattac tttaatggtc gccgaaccgc taatggggag actttcaata
    14161 acgcaaaaat gacggctgca catcgaactt taccatttgg tactttaatt gaagtgacga
    14221 atttacgaaa tggtcgttct gtggtggtgc gtgtaaatga tcgcggacct tatgctcacg
    14281 cacgggtctt ggatttatca tcagccgcag cgaaaaaaat cggtatgcac cattcgggga
    14341 cggcaagagt gaaaattgcg attgttgata agtcaaaatt gggatcgact aatcagtttt
    14401 atgtaatgaa ttaatttaag agggaatatg aaaaaaacat tagtgaaagc gatgagcgtg
    14461 gtaggttttg cggtttcaag cattgcctat gcggatttaa acactaactt caatttatcg
    14521 gcaccccaga tcaacgcaca aacctatatt ttgatggatt acaactccgg tgaagtttta
    14581 gtgagcctaa atccggatca acgtcaatat cctgcatcat tgaccaaaat gatgactagc
    14641 tacgtagttg gtgaagccct aaaatcggga aaagtgcaaa acagtgatat ggtgatagtc
    14701 accgaaaatt cgtgggcgca aaaattcccc ggctcttcat taatgttttt agatttaaac
    14761 agcaaagttt cagtaggtga gttgatgaaa gggctgatta tcgtctcggg taatgatgcc
    14821 tctgtggcgc ttgctgaaca tgtttcaggc tcacaagcgg cgttcattaa tgaaatgaac
    14881 aaatatgccc aacagtttgg cttaaagaat actcacttta ccactgttca cggtttagat
    14941 gaccctgagc aatattcttc tgctcgtgat atggcgatta ttggttcgca tattattcgt
    15001 gatcagccgg aagagtataa aatttatgcg gaaaaagagt tccaatataa catcaaaaaa
    15061 ccacaaccaa accgcaacgg attattgtgg gataaaacca ttcaagttga tggtatgaaa
    15121 acagggcata ctgataaagc cggctataac ttagtcgcat cagcaattaa cccgaataca
    15181 cgtttaattt ctgtagtgat gggcgtgcca acttataaag ggcgtgaagt ggaaagtaag
    15241 aaattactgc aatggggctt tgcgaacttt gaaaccatta aatctattcc ggcagctcaa
    15301 tcggtggcag agcaaagtgt ctattacggt gaagtcaata aagtacaatt aggctcggtg
    15361 caagatagct ttgtgactat cccgaaaggt cgctcggcag atttaaaagc ccgttatgag
    15421 ttagagaaga aaaacctcga agctccttta gcaaaagggc aggtagtggg taaaatgatc
    15481 taccaacttg acggcaaaga tgttgcaagc actaacttac aagtcttaca agatgtaccg
    15541 gaagccggta ttttcggcaa agcgtgggat tggattgccc ttactgtgaa gagcttgttc
    15601 gattaatctt gttatttgcc tttttatccc catctaggga gcaatgcaag cggtgtgatt
    15661 ttgcaaaaaa tttgcaaaat ttcaccgctt accgttttag atatgaatgt ataaaaagtg
    15721 tagtggcgaa aaatttttcg cccctcgaag aaagaataga agaaggatca aaaatgtctc
    15781 aacccaaagc gataaactta caagatttac ctcaagccaa attaaaagat ctgctagagt
    15841 ttccgtgcca tttcacgttc aaagtggtgg gagcaaaccg agaagatttg gttgatgatg
    15901 tggtagtggt cacgcaaaaa tatgccaaag gcgattacaa tccacgtcag caaaaaagct
    15961 caaaaggtac ctataattcc gtttcgattg atattgtggc ggaaaatatt gagcaagtag
    16021 aaactctcta cacggaactt gccaaaatta atggcgtaag aatggtatta taatgcgagg
    16081 ggcgaatgac attcgccctc aatttttcaa taaagcgatg ttggaaaata gaaaatgaaa
    16141 ttaataattc gccaactagg cattcagcct tatgaagaaa tttggcacca aatgcaatct
    16201 ttcacagata gccgtgatgg gaataccgat gatgagatct ggctggttca gcacccggct
    16261 gtgtttacgc aaggatcggc aggcaaaccg gagcatttgt taaatccaac caatattccg
    16321 gtggtgcaaa gcgaccgtgg cggtcaaatt acttaccacg gcgaggggca gcaaattatg
    16381 tatgtgctga ttgatatcaa acggctgaaa tccttgggta aagaagtgtc ggttcgagat
    16441 ttagtgactg ccctggagca aaccgtggta caaacgttgg cagaatatgg catagaaagt
    16501 tatccaaaag ccgatgcacc cggggtgtat gtggacggca agaaaatctg ctcacttggt
    16561 ttacgaattc gaaaaggttg ctctttccac ggtttggcat taaatatcaa tatggactta
    16621 acgccttttc aaaacatcaa tccgtgcggt tatgcagggc tggaaatgtg ccaattaagt
    16681 gaactggttc atcgccctga tttgcgttgc gaagaggttg ctccaaaatt agtggctcat
    16741 ttcagcacaa ttttaggcta taataaccaa caaattatta acaattagga taaaacacag
    16801 taatggctac atcgacagct caaacgacgg caactgctac agtgaaaaaa atgagccctt
    16861 tcaaaatgga aaaaggggtg aaatatcgtg atgccgccaa aacctctgtg attcaggtgc
    16921 gtaatatcga cccggatcaa gaactcttaa aaaaaccgga gtggatgaaa atcaaactgc
    16981 cggcaaattc ggcaaaaatt gatagcatta aaaacggtat gcgtcgccac ggcttgcact
    17041 cggtgtgcga ggaagcctct tgcccgaatt tacacgaatg ttttaaccac ggtactgcaa
    17101 cctttatgat tatgggggca atctgtaccc gtcgttgccc gttctgtgat gtggcacacg
    17161 gcaaaccgct tccgcttgac ccggacgaac ctcgcaaagt ggcagaaacg gtgcaagata
    17221 tgaaactcaa atatgtggtg attacctcag tggatcgtga tgatttgccc gaccgtggtg
    17281 cggctcattt ctctgcgacc gtgcgtgaaa tcaaagcctt aaatccgcat tgtaaggttg
    17341 aaattttagt gcctgatttc cgtggacgtg tggagcaagc ggtggcaatt ctcaaagaaa
    17401 atccacctga tgtctttaac cacaacctag aaaatgtgcc acgtctctat cgtgaagttc
    17461 gtccgggagc ggattacaaa tggtcgttgg aattattgaa aatcttcaag caagagttcc
    17521 cgcatattcc gaccaaatcc ggcttaatgg taggcttagg tgaaaccaac gaagaaatct
    17581 tggaagtaat gcaagattta cgagaccacg gcgtgacgat gctcaccatc gggcaatact
    17641 tacaaccaag ccgccaccac ttaaaagtgg aacgttatgt gccaccggca gagtttgata
    17701 tgttccgtga ggaagctgaa aaaatgggct ttgaacacgc agcctgcgga ccgttcgtgc
    17761 gttcttctta ccacgcggat ttacaagcga aaggcgaatt ggtgaaataa aatcgataag
    17821 ggcgaatatt atttgccctt tgtttttgtg gtttgcaaag ttttagcaaa attaaaccgc
    17881 ttgtaatctc ttctaattta ctcttctata gataatttcg ttgttgcgaa ttattttcat
    17941 tgactatttg ttatagaaag ttacaattca actttccatt tctttttgga gttccaatga
    18001 aaaaattact attaaacagc gtatttgctg ccacattgct tgcttttggt gcaactgcca
    18061 atgccgaaat taaaaccatc actgatgtat tagggcgtga ggtcaaagtt gatgtgcctg
    18121 ctaaacgtgt tgcactgact ttctattacc ctgactatat tgcggtaacc ggtgttgaaa
    18181 atttcgataa ggtagtaggg atttcacgag agttttggga aaagttcaac ccaggcagtt
    18241 gggcattatt tgcagaaaaa atgccaaatc taaaaaacat tgccgatctt ggctatgtga
    18301 atagtggtac tttttcaaca gaaaaaacca tcgcattaaa accagatgtg ttagtgctac
    18361 ctgaaattca atatcaagcg ttagccagtg aaatttcacg cattgagcaa gctggcattc
    18421 ctgttgtagt agatttcaac aagcaaacta ttgaaaacca tacaaaaagc gtgagagttt
    18481 tcggtcagct tacaggcact gaagagagag cggagaaaat tgccaaagag tatgaagagg
    18541 gcattgctga tattcagagc tgtattgata atgcaaaagt aagtaagccg aaaatctatg
    18601 ctgaatttgg taataaaggc ccgaaagagc atagttttac ctttggtaaa aatatgtggg
    18661 gagcgattgc cgaaacggtg cgaggcgata acattagtgc cccgtttgta gaaaactggg
    18721 ggcagattaa ccctgagcag gtgttagttt ctaaacctga tgtgattatg atttcaggta
    18781 cggaactagg caacgacact aaccctgaga ttatgtcgat ggggattaat attgaagaag
    18841 ccgatgctca aaaacgctta aaaggcttta ttgagcgtac aggttggaaa gagttacctg
    18901 cggtaaaatc agggcgtgtt tatggtttat atcatacagc ttctcgctca atttcagatt
    18961 tagcgagtgc tcaatttatg gcaaaagcac tttatcctga attgtttaaa gatatcgatc
    19021 ctgaaaaaac gtatttggat ttccacaaca actacttacc aattacgcca aaaggcacat
    19081 tctttatgca actgaaataa aaataacaag cggtcatttt gcagatttat tttgcaaaat
    19141 gaccgcttgt attcgctttt actatttgcg gttcaaacag caatcaatat ttaaacattt
    19201 gcgaagcggg cggataatcg gcgagccgtt tccatcatat aaaatctcaa tattgacatt
    19261 atagagtctc tgaataatat cgcattccaa catatcacaa gctctgcctt gtgcttgaat
    19321 ttcccctcgc ttaatagcat cacactatcc gaaaattgag ccgcaaggct taaatcgtgc
    19381 agcaccataa ttgtaattag gttattcgct cgagtgtagg cattcacata ttcaagtaag
    19441 ttgatttgat gatacatatc caacgcactg acaggctcat ctagcagcag aatgtgtggt
    19501 ttacgtagca atacttgtgc gaacattacc atttgccgtt gcccgccact tagccgcata
    19561 atatcttgat gagctagatg tgaaataccg agtttatcca taatatcaac ggcttcattg
    19621 agtaattcat cgctaatata catattcagg ctatcaagtt gccctaataa aataacctct
    19681 aaggcactga gtgaggcctc tacctgtgtg tcttgtggca tatagccaat ttctttacgc
    19741 caactatgca agtggcttga ggttaattta ttaccgtcaa aatcaattgt gccttgatga
    19801 gcaatttccc caaatagagt tttaaggaga gaagatttac ccgcaccatt tgggccaagt
    19861 aaagtataga tcttgccttg ttcaaaatgt agattgattt tatcagccac cactga
//
LOCUS       DANMGB010000028        19873 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.028, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000028 DANMGB010000000
VERSION     DANMGB010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19873
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.028"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..1578)
                     /locus_tag="PXG19_000753"
     CDS             complement(<1..1578)
                     /locus_tag="PXG19_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL6066076.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDE"
     gene            complement(1641..2447)
                     /locus_tag="PXG19_000754"
     CDS             complement(1641..2447)
                     /locus_tag="PXG19_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066077.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            complement(2462..4432)
                     /locus_tag="PXG19_000755"
     CDS             complement(2462..4432)
                     /locus_tag="PXG19_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL6066078.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            complement(4434..5387)
                     /locus_tag="PXG19_000756"
     CDS             complement(4434..5387)
                     /locus_tag="PXG19_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066079.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            complement(5599..7182)
                     /locus_tag="PXG19_000757"
     CDS             complement(5599..7182)
                     /locus_tag="PXG19_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066080.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            7404..8561
                     /gene="hemW"
                     /locus_tag="PXG19_000758"
     CDS             7404..8561
                     /gene="hemW"
                     /locus_tag="PXG19_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL6066081.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            8704..9186
                     /locus_tag="PXG19_000759"
     CDS             8704..9186
                     /locus_tag="PXG19_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6066082.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            9200..9352
                     /locus_tag="PXG19_000760"
     CDS             9200..9352
                     /locus_tag="PXG19_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066083.1"
                     /translation="MRFDEAKLHAESEFEKYRIVQDRLFESDFDKVLKEMLRSENQYR
                     PSFSTT"
     gene            9439..9906
                     /gene="bcp"
                     /locus_tag="PXG19_000761"
     CDS             9439..9906
                     /gene="bcp"
                     /locus_tag="PXG19_000761"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL6066084.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGVEQVFDKFKTGEHHQMIVDYLRGR"
     gene            9906..10454
                     /gene="gmhB"
                     /locus_tag="PXG19_000762"
     CDS             9906..10454
                     /gene="gmhB"
                     /locus_tag="PXG19_000762"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL6066085.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            10459..11298
                     /gene="queF"
                     /locus_tag="PXG19_000763"
     CDS             10459..11298
                     /gene="queF"
                     /locus_tag="PXG19_000763"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL6066086.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            11490..12623
                     /locus_tag="PXG19_000764"
     CDS             11490..12623
                     /locus_tag="PXG19_000764"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL6066087.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(12620..13678)
                     /locus_tag="PXG19_000765"
     CDS             complement(12620..13678)
                     /locus_tag="PXG19_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6066088.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSA
                     FYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIIL
                     QIMPWFYALQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLI
                     LAITTLGVMNVLPYIFLI"
     gene            13761..14222
                     /locus_tag="PXG19_000766"
     CDS             13761..14222
                     /locus_tag="PXG19_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6066089.1"
                     /translation="MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILD
                     LNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLS
                     TDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            14235..15128
                     /gene="murQ"
                     /locus_tag="PXG19_000767"
     CDS             14235..15128
                     /gene="murQ"
                     /locus_tag="PXG19_000767"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL6066090.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(15212..16156)
                     /gene="prmB"
                     /locus_tag="PXG19_000768"
     CDS             complement(15212..16156)
                     /gene="prmB"
                     /locus_tag="PXG19_000768"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6066091.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            16249..16794
                     /gene="smrB"
                     /locus_tag="PXG19_000769"
     CDS             16249..16794
                     /gene="smrB"
                     /locus_tag="PXG19_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL6066092.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            16858..17343
                     /locus_tag="PXG19_000770"
     CDS             16858..17343
                     /locus_tag="PXG19_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL6066093.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(17345..18094)
                     /locus_tag="PXG19_000771"
     CDS             complement(17345..18094)
                     /locus_tag="PXG19_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6066094.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            18266..19129
                     /locus_tag="PXG19_000772"
     CDS             18266..19129
                     /locus_tag="PXG19_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL6066095.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            19253..19846
                     /locus_tag="PXG19_000773"
     CDS             19253..19846
                     /locus_tag="PXG19_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066096.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
BASE COUNT         6022 a         3880 c         4304 g         5667 t
ORIGIN      
        1 ttcatctaag tagtgcgcgc ctaaactctg ctcatttagc atttgattga ccactaattg
       61 agcggttttt aacgcattgt aaatttcaat gccttgatat tgagcgtgat agattgggtc
      121 aaattcttgt tccaaacggt ttaattcctc aagtagtagt ttgaggttgc tccgagtgcg
      181 gtacacattg gcgtataacg ccattttctc tcgaatagta gaaagcactt cactggcagt
      241 tagttctaga ttagcagttg aattagcaag ctgatttaat gctttttctg ccattgcaag
      301 cggtgagatt tcgctgtttt tttgcaaatc attctgttct agcgaacgaa caatttccga
      361 taccgcacgt ttggcaaaca ctaagccacc gccgactgag ttaccaccca tacggtttgc
      421 cccttcaatg cagtgagaaa tctcaccaat cgcaaatagc ccttttactg cactttcgcc
      481 ccattgatta atttgaatgc cgccgttaca gctatgagca aacggcttga ttgcaatctt
      541 atcttgcact aaatcaatcc cgacttcatt tttgagccaa ttcaaataga cggtataaaa
      601 ctcttccgtg tcttcataca gtttggggct gtatttaagg taaatgcctt tttcgtgagg
      661 gttttcaagc aaatgtttca tcatcactaa atcgaactcc acgccggcaa aatcaaggct
      721 gaaaggagca taatggctac gttccagcac catttttgca aattgctcgg catttaagtg
      781 tggaaataga ttgttaccct tagaatcggt gatttgggtg acatatttca atgtatgttc
      841 gccaaatagc accttgtatt ttggctcgac aaaggcagga atgaactgaa taaaggcaag
      901 attaaccaag gttgccccgg cttgttgtgc cacataatga agtgaaccga taacatcagc
      961 cgggtagaga ttatctttat acagcccagc aatcccgcct gcggctaaaa taagatgctt
     1021 ggttttgcaa aaaatatagg aaatttgacc gcttgtagtg agcgaaaata ccgcaccttg
     1081 cacttggtta ttgtctgtga cgatgtgtaa aagggtagca ttttcataga aagcaatgtg
     1141 ttgctcttgc aaaatctgtt tcgctcgtag ggcagattcc cgccaatctt taattaaata
     1201 aattgggcga gggtatttgg caaaacaagc cggacggttg tcgttacgct tccaaggctg
     1261 aaagccgata cggtggagta gttcaatcgc ttgtggtgaa tcttcgatat aggcttgtac
     1321 cacattaggg ttgattttgc ctttgccgat gttttcaata tcttctttaa agtgaatttt
     1381 atcggcttca tcgccggtta cttgaatgcc aagtgttgcc ttaagcggaa agtagctcgc
     1441 tcccgagcca atcgtagatt tgctaatcag taaggtatta atgccttttt cttttgcctc
     1501 aactgcagca gaaagcccag cgatgccaga gccgacaatt aataaatcaa tgttaatggt
     1561 ttgggtaatt tggatcataa ataaaaacac aagcggtaaa atttgcgaaa aattttaccg
     1621 cttgtaggca caaagcacaa ttataataaa gatggtgctg cttcaattaa ggttcgggtg
     1681 tactcttgcg ttgggcgttc aaatacgtct gaagcatcgc ccatttccac aattttaccg
     1741 ccgttcataa ccacaatgcg gtctgaaact tggtgaacgg tttgtaagtc gtgagagata
     1801 aataccatcg ctaaattgag ttcttttttc aagtctgcca gcaggttcag tacttgagct
     1861 cgaaccgata cgtcaagtgc agaggttggt tcatcagcca caatcagctt cggatttaat
     1921 gccaatgcac gagcaatcgc tacacgttgc ttttgcccac cagataatcg ggttggctcg
     1981 accaacgccg ctgaacgagg tagaccgact cgagagagca aatcataaac ccgcttctca
     2041 cgttcttgcg gttgtaagat attatgaata tccatcggat cttttaaaat atccaacaca
     2101 cgcatacgcg gatttagggc ggttgccggg tcttggaaaa ttactgacac ttggctaccg
     2161 aaatatttgc gagcttccgc actgccatat ttcatctcta agccgttaaa ttttactgtg
     2221 ccggaggttg gtttttgaag cccgatcatc acactggcta aagtagattt gccacaacca
     2281 gattgtccaa ccagaccgac tgtttcaccg gcgtgaattg ctaggctgac atcatttacc
     2341 gccgtgaatt ttttcgggtt aaataaggtg ccgtcacgag aagcaaattg cacaacaata
     2401 ttagacagtt caataattgg ctgttctttg ataaatttca tactcatcgt attgctctcc
     2461 tttatgcttc tttagattgt ggatcttcta agtgtgaagc ccagaagtgt tgtgggtgat
     2521 caccggttgg cactaatttc aagtgctgtt cagggtttgc atctggtctt aatgaacgac
     2581 tcgcaaaacg gtcacctttc gcaaaatcaa atggtgaagg cacactgccc ggaatttggt
     2641 ataggcgttc tgcacgcaat tcggtagaaa gtaccgagcc taataatcca cgtgtgtatt
     2701 cgtgtgttgg gtttgccaat aatggcgtag ttggtgcagt ttcaaccact tgaccagcat
     2761 acattaccgt gatgtggtga gcgatttgtg ccactaaagc taagtcgtgg ctcacgaata
     2821 ccattgcaaa tccaagtttc tcacgtaatt cgtttaataa tttgatcact tcagcttgaa
     2881 cggttacgtc taatgctgtt gttggttcat cagcaatcaa tagtttcggt tcacgagcaa
     2941 gtgccattgc aattaataca cgctgacgtt gtcctccaga taactcgtga ggataacggt
     3001 tgagcgtttt ttccgggtca agttttaccc attgcaataa tgtttctgct gattgtttac
     3061 caccacggct gattaattgt gccatttggt ctttaatacg cattgatggg tttaacgcac
     3121 ttaatgcatc ttggtaaatc atcgagattt cgtgaccacg aagggcattt aaatcggctg
     3181 attctaaaag attgtgttgt ttacctgaac ggtcggtaaa gaggatttca ccagtgattt
     3241 ttgcagtttt tggtaataaa cccataattg agaatgcggt gattgattta ccacaaccag
     3301 attcacccac taagcccatg gtttcgcctt cgtgaacagt aaagctgata ttatcaacaa
     3361 gcggagtttc accataacga tttgggaaac ggattgataa gtttttcact tgtaaaatcg
     3421 gtttggccgt tgagtttaat tgcatacggt cagtacgggt cgtttctttc tcgtgtaatt
     3481 tgagtaagta acgttttaac gcaagagttt cagacattgc ttcttgaacg tctgttgcca
     3541 atggttttgc gacatcttct ttactttgag ttgaacgttt tagttttgga tttactaacg
     3601 catcggttaa gccttcagca aggatattta acgcaagtac ggttaataaa atcataatcc
     3661 ctgcgaaagt tgtagcccac cagaagccac ttaatacaag gttacgacct tcagataaga
     3721 tatttcccca agatgggaat ggaggctgga cacctgcacc taagaatgaa agtgatgctt
     3781 caaatacgat ggcatcagca accatcactg ttgcgaatac taaaaccggt gcagcagtat
     3841 tacgcacaac gtgttttaat agaatataag tacggctacc accaattaca cgctcggcac
     3901 gcacataatc ttcttcccat tgagatacta cgttagcacg caccactcgg gcaagttggg
     3961 gagtgtaaac aaccgcaata gtcacgataa tcacaggtac agagttaccg aaagtggcaa
     4021 gtaatacagc agctaatgcg atacccggga atgccattaa gatatccata aaacgcataa
     4081 tcacttcgtt accgaattta tcggcggttg ccgcagttgc ccctaaaata ctaccgaata
     4141 gaatcgcaac gcctaccgca cctaaaccga taaagagaga tgttcttgct ccccatacca
     4201 tacgcgagaa aatatcacgt cctaaacggt ctgtaccgaa taaataatca ccgcttggag
     4261 cttgcactgg acgtagcgtt tgcagtgggt cataaggcgc tactaatggt gcaaaaatag
     4321 cgactaatgc gataaataca ataaagagta aggcgatttt tgagctggtt gataatgctc
     4381 taaatcttgc accgcctgaa gcaagtcgag cagctaatcc ttggcgaaac atattataaa
     4441 ctccgaattt ttggattaat gagcaagtaa agaatatcaa caatgatatt caccaacacg
     4501 aaagtaaatg cgatagttaa tactacacct tgcactaagt tcaagtcgtg attgacgata
     4561 ccgttgaaaa ttaatttacc cattcccggt aagtcgaaga tctgttcaat cacaactgca
     4621 ccacctaata aataaccaac ccgtaaacct aatactgtta ccggagtaat taaggcatta
     4681 cgaagcacgt tgtggcgaat caccgttgag taaggtacac cattaccgat ggctgttcga
     4741 acataatctt tatccatttc ttctaccatt gttgtacgca cgacacggat caatgaggca
     4801 catacaggaa cagctaaagc gagtgaaggg agaaccattg agtttacata gccttttgga
     4861 tcttcgctaa atggaataaa accgcctgaa ggcaaccaat ctaattttaa ggagaagtat
     4921 tgaatcaata aaatacccaa ccagaaagaa ggtgtggcaa cagcggcaac cgagattaaa
     4981 cggattaatt gatcaatcca agtatcacgg taaagtgctg ccgttacacc taatgtgaaa
     5041 gagacgatag cagctaagaa gaccccaata aaggtaagct gtaatgttaa agggaatgct
     5101 ttagcaatca tatcaacaat aggctgttct ggaggggttg tcataccgaa atctaatacg
     5161 aataaattcc ctaaaaagcg aaaatattgt acaagcaatg gatcatttaa cccatgttgt
     5221 tcacgataga tttctttagc ggcttcgctg gcgctttcac cgagagcaac ggttgccgga
     5281 tctccggggg tgaattgtaa aacaataaat accaaggcag ttacgcctaa gatcattacc
     5341 ggcagagcca ttaggcgacg ccataataat cggagtataa tttccatttt cttctccttg
     5401 agtgtagtta cactccaaaa ttaaatctaa gtttacctac aagctaatat agtgatatgt
     5461 aggattataa atgaaaatat agaaatggta agaattctga gtgatataag acgaatatta
     5521 catcattttg atttttattt atgcaagcgg taaatttttt gtaaaatatt accgcttgca
     5581 tttagctagc cgttacgact atttagcacg accaacaccg ataaatgaca tacctgttgt
     5641 tggtaatggt tggaaacctg ttaatgcctt atcattccac gcagttggca atttacggtg
     5701 aataattggg taaagaggca cttgttcagc gataatattg attgctttcg cccaggcttc
     5761 tttagaagca gcaggatttt tggccgcttc atcaagcagt ttttgtactt ctgcatattc
     5821 agctgtttca gaccagcgga aacgacgttt cggccataca tcaccacgat accaccagct
     5881 taataatagg tctaagtcat taccgaaaac tgatgggtcg ccaggtgcaa tcacaacttc
     5941 gtatgcacct ttatcaacgt gtgtgccata taatgcacct gattgtaagt gtttgagtga
     6001 aactttcacg ccttttaagc tgttccacga ttcaagaatt aatggcgcac attctttcac
     6061 ccaagagtga tcggttgcca acaattcaaa ttttaactct gtcacacccg cttctgctaa
     6121 taacgcttcg gctttcgctt tatcgaaatc atattgcgaa tttgctttca cataatccgg
     6181 gtgagtatct tgcacgtaag atgtagcagc ttttgcattg cctaagaaca ccacatcaat
     6241 taatttttgg gtatctaagc cataatgtaa cgcttggcga actttcgggt tgttaaacgg
     6301 tgctttttca cagttaaaca ttaagaacag taagccgaat gattgtactg actcaacggt
     6361 acctttacgt tttaagcgtt ctgcatctaa gtaaggcaca gactcaattg cttgaacacg
     6421 gccagattct tgagcggtta cacgagcggc atcatcagaa agtaagaacc aagtcatttt
     6481 ctcgacttgt gccgggtagc caccgttata atctgcaaat gcttcgaaaa caatacgatc
     6541 atctttagtt gcggatacaa atttatatgg gccagtcccc actggattag catcaaatgc
     6601 agcttgaccg gcttctacca ctgcttttgg tacgatttta acaatggtta ggcgctcttt
     6661 gaataacgca aatggatatt tcaatttgaa ttcaaccact ttgtcatcaa cttttttcac
     6721 agtgtcaata aatggaatga attgtgcgaa aagtgatgct ttagctgggt ctaatacacg
     6781 ttcaaatgag taaactacgt cttcagtggt aaccggatta ccattgtgga atttagcccc
     6841 gtcacgtaaa gtaattcgat aggttacatc atcaattttt tcaggctctg ctgctgccaa
     6901 tgctaaatat ggtttgcgag tggctggatg taagtccacg aggccttcaa aaatatggag
     6961 gtttgccgcc attgaggatg caccgcttga ggtaagcggg tcaaatccgg ttgatatggg
     7021 ataagctata ccggcctcaa tcgttgagcc ggcggcaggg gctgcaaatg ctttaggtgt
     7081 aaatgtacct aaagtgccac taaatgccat accggcaccg acacctgcaa ttagtttcat
     7141 aaaaccacgg cgggattcgt tgtgttcaaa ctgttttttc atcttaaagc tcctttaagt
     7201 ttttatgata ggggcggtat tatttgctga agtgaattta tcaaaaaatg cacttttttg
     7261 aattgaattt atcatatcat taatgtcaaa gtggtaaagc aagaattatt gaatttgtga
     7321 tctagctcac gaaaatcttt gcttttcact tcacgtgctt ttcgttatta ttcgccaatt
     7381 taatcataaa tgaaaaattg acagtgaacc tgattttacc gcctttaagc ctttatatcc
     7441 atatcccttg gtgcgtgcaa aaatgccctt attgcgattt taactcgcac gctcaaaaag
     7501 gattaattcc cgagcaagaa tatatcgaac atttacttgc agatttatcc caagatttga
     7561 ccgcttaccg agtggcaata ggtgatcgta aattatattc tatttttatt ggcggcggca
     7621 ccccgagctt attttcagcg gaagggatag cttatttatt aattgaagta gaaaaacgga
     7681 ttgcattcga gccaaatatc gaaattacac tggaagcgaa cccgggaacc gcagaggcag
     7741 agcgattttt aggttacgca caaggtggcg taacccgcat ttcaatggga atccaaagtt
     7801 ttgagccgga aaaattattg aaattaggac ggattcacga tgcaaatgaa gcaaaacaag
     7861 cgattaaatt tgcccaaaat tctgcaaaat cgggcttgca aagtttcaac attgatttaa
     7921 tgcacggctt accaaaccaa tcggttaaac aagccttggc ggatttagaa acagggattt
     7981 cactcaatcc accgcattta tcgtggtatc agctcacgat tgagccgaat acgatgttct
     8041 attatcgtaa gccaaccttg cctgatgatg acgagttatg ggatattttc gagcaagggc
     8101 atcaactttt aacgaatgcc ggctatgagc agtatgaaac ctcggcttat gccaaaaaag
     8161 gctaccaatg cagacacaat ttaaattatt ggcgatttgg ggattatttg gcgattggtt
     8221 gtggcgctca cggcaaaatt tcatatccga ccggggaaat ttatcgcttt agcaaaatca
     8281 aacacccgaa aggttatatg cgaggtgaat atcgctacag ccaagatttg attgaattag
     8341 acgaccgccc gtttgagttt tttatgaacc gctttagatt acttgaagcg acaccaaaac
     8401 aagaatttga atggtttaca gggttagaca gggaagttgt tcgcccgaca atcgattggg
     8461 cgttaaacca aaactatatt tccgaaaccg caacccattg gcaaattacc caacacggta
     8521 aattgttttt aaatgaatta ctggaaggat ttttggaata atttgcaaaa aaacgactaa
     8581 aaaaagaccg cattgtaatg ctaaattaca ggcgtttttt gtgatctgcg tcgaaaaatc
     8641 ctcatttttt actagacaaa aaaacagtat ttagtagcat agccttcaca ataaggagag
     8701 cttatgatcg ataaacaaat ccgtaatagt accgccgaat ttttgatttt tactcaacaa
     8761 aatggggcag aaaatattac cgttcgctat gaagataacg aaatttggct tacgcaaaaa
     8821 ttaattgctc agctttttga ttgctcaaca gataatgttt ctttgcattt aaaaaacatt
     8881 tttaatagta gggaactcga tccaaattca gttaccgagg atttctcggt aactgccgca
     8941 gatgtcaaaa attatcgtac caaacactac aactttgatg ccgttatttc gataggctat
     9001 agggtaaact cggtgcgggc gacacaattt cgccaatggg caactaaagt attacggaat
     9061 ttcgcccaaa aaggctatgt gattgaccgc caaagaatgg aaaatggtac atttttaaat
     9121 gaagattatt ttgagcagtt gctggcagaa attcgtgaaa tttggttatc tgaacggcgt
     9181 tcttgagggc aaaggcaaaa tgcgttttga tgaagcgaaa ttgcacgcag aaagcgaatt
     9241 tgagaaatac cgcattgttc aagacagatt atttgaaagc gattttgaca aggtattgaa
     9301 agaaatgttg cgttcggaaa atcaataccg tccatcattt tcaacaacat aaaacaaccg
     9361 cattttgcaa attttttgcc aagtttgacc gcttgccgtg tataatgcaa gcggttattt
     9421 tttatggaaa aattacaaat gaatatctta caagcaggcg ataaagcccc taaatttacc
     9481 cttcagaatc aggctgacga gccggtttct ctctctcaat ttgccggcaa aaaagtactg
     9541 gtttattttt atccgaaagc tcttacaccc ggttgcacta cgcaagcgtg cggactgcgt
     9601 gacagcaaat cagaacttga tgagctcaat gtggttgttc tcggaattag caccgattta
     9661 ccgaaaaaat tagctcaatt tgtagagaaa aaagcactta attttacctt attatctgac
     9721 ccggatcacc aagttgcaga agcctttggt gtatggggcg aaaagaaatt tatgggaaaa
     9781 acctatgacg gcattcatcg catcagtttt ttaattgatg agcagggggg ggttgagcaa
     9841 gtgtttgata aatttaaaac cggcgaacat caccaaatga tcgtggatta tctacggggt
     9901 cgctaatggg aaaaaaagcc atttttttag accgtgacgg cacaattaat atcgatcacg
     9961 gctatgtgca tcaaattgat gattttcaat ttattgacgg tgtcggcaag gcgttaaaac
    10021 agctacaaga caaaggttat ttattggtgc tggtaaccaa tcaatctggc attgcccgag
    10081 gctattttag cgaagcacaa tttatgcaac taaccgaatg gatggactgg tcgctcgatg
    10141 aagattatgg cgtggtacta gacggtattt actactgccc acatcacccc gaaggcaaag
    10201 gcgaataccg taaagattgt gattgccgta agcctaaagc aggtatgttt actcaagcga
    10261 ttcaagattt aaacatcgac ccaagccaat cttatatggt gggcgataaa ttagaagata
    10321 tccttgccgc agaagccgcc ggcgtgaaaa ccaaagtgct ggttcgcact gacaaagcag
    10381 tgacggaaga gggtcaggct aaagccgatt tggtgttaga tagtttagtt gatttagtaa
    10441 aatatattaa ataaagcaat gaattataac gataaatccc tttccgccct gaaattaggg
    10501 caaaaaaccg agtacaaaag cgaatatgat gcctcgcttt tgcaacctgt tcctcgtaaa
    10561 ttaaaccgtg atagtttagg cattacacaa gagcagcctt ttaaccgagg ggctgatgtg
    10621 tggacttgct atgagctatc ttggttgaac caaaatgggc taccgcaagt agcgattgca
    10681 gatgtcgcca ttgattttaa gagcgaaaac ttaattgaat cgaaaagttt caagctctat
    10741 ttgaacagtt ttaaccaaac caaatttagc tcaatagaag aagttgggaa aacgattcaa
    10801 gcggatctgg ctcgctgtgc aagcggtcag gtttcggtaa aaatttacca attatcacac
    10861 tacacgcaac agccgatagt tgattttgca ggcgattgca ttgatgagca agatattcaa
    10921 atcgacagtt atgcgttttc gactcattat ttagagaaca ttgcagaaga tgagttggtg
    10981 gaagaaacct tagtcagcca tttgctcaaa tctaactgct taattacgtc acagcctgac
    11041 tggggaagtg tgcaaattcg ctacaaaggc aaaaagctaa accgtgaaaa actgttacgt
    11101 tatttagtgt cgttccgtga gcataatgag ttccacgaac aatgtgtgga acgcattttc
    11161 tgtgatttaa tgcaatttgc cgagccggaa aaattaacag tttacgcacg ctacaccaga
    11221 cgaggcgggc tagacatcaa tccgtttaga tcgaattttg aggaagtgcc ggaaaatcta
    11281 agaatggcac gccaatgatt ttgttgtttt ttgttcccgt ctgaaccgcc tgagcgtgtt
    11341 tgaattggta ggtaaattta ctctgagcgg agcgaatgta aatttgccgt taagccaatt
    11401 caaactaagc gaggatagcg gtgaagctcg ggttgccttt cttttggtta cttttctttg
    11461 gcaaagcaaa gaaaagtaac aaatagcaga tgttgatttt tatgatgaat gaatatagcc
    11521 caaattacta tataggcgta atgtccggca cgagccttga tggggtggat attgctttgc
    11581 tggattttgc aaaaaatcca ccgaaaatga ccgcttgtga tttttttcca atgccggagg
    11641 aattacgggc ggatatttct gcgttactta aaaccggcga aaccaatctc caaaaactgg
    11701 gggaaattga tcaccgttta ggcttgcttt atgcagaaac gatcaatgcg tttttagcga
    11761 aaaatcagct aaaagcagaa gatattcaag ccataggttg tcacgggcag acggtgtggc
    11821 attcaccgga ttctgagtat cccttcacca cccaaattgg cgatatgaat ttggtggcag
    11881 agcaaaccgg tattaccact atcgctgatt ttcggcgtaa agatatggca gtaggtgggc
    11941 aaggggctcc gcttgtgccg gcatttcatc aagctatttt tagcgatcca aatcgtctaa
    12001 cagtggtgct gaatattggc ggcatcagca atatttcggt gttaaatccc aattccccta
    12061 cagttggtta tgatgtagga gccggaaata ctttgatgga tagttggatc gaacaacatc
    12121 aaggcaaaag atacgataaa aacggcgaat gggcgagaac gggcaagctc aatactgaac
    12181 tgttagcgac gttattagac gagtcgtttt ttgctaaagc cccgcctaaa agcactgggc
    12241 gggagctgtt taatttaacg tggcttgcaa aaaaattgga aaatttgacc gcttgtcagc
    12301 cacaagatgt gcaacgcacg ctggcagaat ttactgctca aagtattgcc aatgagttat
    12361 tacgctttga aagctctctg cctcgcttgc ttttagtttg tggtggtggg tcaagaaatc
    12421 cgttattaat ggaacggatt tctgctttac ttcccgagtg ggaggttaca accactacag
    12481 aatttggttt agatattgat tatgtagagg ctgccgcttt tgcttggtta gcttaccagc
    12541 gaatccataa tttacccagt aatatgccta gcgtgacagg agcaaaaaaa gccgtgagtt
    12601 tgggcgtgat ttaccctgct tagattaaga aaatgtaagg taatacattc attactccga
    12661 gagtggtaat agctaaaatt aatttagagc ttccaaacat taagccttgg tttttaccat
    12721 tgtctaattt cactagcata ttagatagtg ccgtattcgc atacacggta atagtggcaa
    12781 aaatcactaa atagagaaat gcagtgatgg ttgaaagcca ttggagtgca taaaaccaag
    12841 gcattatttg aagtataatc agtattggtg caatataaat aagtttatgt actgtcagat
    12901 ttaattttcg tgaaaaatca gattgcaata acactgcaat taaattattc acaaagaatg
    12961 agacagagac taattctggt ttatccagaa gattggtgaa tatatagggg aatataatat
    13021 aaaatgcact tcctagacca agcggaataa aaagtaataa atgtacaaaa ataaattgtt
    13081 catttagtat tccttttaat gcaccaaatt taaagcgttc gcattgccca tttgcacatt
    13141 catgtgtttt gggtgcggtt ttaaacataa cgaatagcat aataatttca atgcagcagc
    13201 taatccaaat aagccattct gctttacggt agaaaataaa tggaatagta agtaatggtg
    13261 ctaccatcgc tgacaggctt gataccttca gaaatttacc ttgagcctta gttttgagtt
    13321 ggtaactatc tccggtatct tgaatattgg ctaataagaa tgctctcgca ttggtactaa
    13381 ataaggtgct accgagcccg aagaaaaagg tagcaagtaa tagcagaggg taattttttg
    13441 ttgtcagtaa taaaatgtaa gctagggcat cgagcaaaca gccaagcatc atgatagggt
    13501 aacgtccaaa actatcaccc caagaacctg caaaaaggga aaatgcttgg ctggtaaaga
    13561 ccaacaaaga aaatgcagtt gcaatttggc tggtttcaaa gcctttgtag aatgtaagta
    13621 gataaaaaat acgctttgca ttgcagcata agcaagaccg gaaaagaatt tccgccataa
    13681 aatgatattt tggatattca tagataatat ttaatgagaa aaatgatttc taatataact
    13741 aaatttaata aggaagcaca atgagaaaaa tcaaattatt gcatgttatt ttatctttaa
    13801 tattagggct ttctgcggca gcgattggaa gttatccggc aataaaagag attggcgagg
    13861 agcgggcaaa aaaacatcaa gatatattag atttaaatag agaactttat agtgcaatgg
    13921 tgaaccgtga tttttcggct ttgcaaacat tactaagcga tgattttgag ctttattcat
    13981 caacaggtga agtgattgat aagcaagaat ggatcaaatt aatccaaaag agagtattgg
    14041 aatttgataa ggttgatttg ctatctaccg attttcaggg gaatcaatca tctggattat
    14101 taagagtaaa tggtgagttt tttgggatag agcgggataa tgtggtggta gaaatgaata
    14161 ttcgaaccat tgtgagaaat acagaacgcc aaattaaatg tattgtgatt aaagaggttt
    14221 aagtgtcgca actattgaat gccttagggc agatgattac cgaacaacgt aatccgaatt
    14281 cgatgaatat tgaccgcctt tcagcgttag atatagtcca agtcatcaac caagaagaca
    14341 aacaagtagc gattgcggtg gagcagtgcc tgcctcaaat tgcacaagcg gtggaaaaaa
    14401 ttgtgcaagc ctttgagaaa ggtggacgat tggtttatgt cggtgccggc acgagcggaa
    14461 gattaggggt gcttgatgct tcggaatgtc cgcccactta tggcgtaaaa cctgaaatgg
    14521 tggttggatt aattgccggt ggtgagcggg cattacgttt cccgattgaa ggggcggaag
    14581 ataatcgtga gcaaggcaaa gtagatttac aagcggtcaa ttttagcgaa aaagatgtat
    14641 tggtcgggat tgcagccagt gggcgaacgc cttatgtgtt aggggcgatg gaatatgcta
    14701 agcaacttgg tgcgaccacg gtgtcgattg ccagtaaccc aaattcggca atggcacaaa
    14761 ttgcggatat tgcgattgaa accgttgtcg ggccggaagt gctaaccggt tccagccgta
    14821 tgaaatccgg cacagctcaa aaattggtat tgaatatgct cactactgcg tcgatgattt
    14881 taatcggtaa atgctaccaa aatttaatgg tagatgtgca agcaactaat gaaaaactca
    14941 aagctagagc aattcggatt gtgatgcaag cgacagaatg tgaacgagaa gtggctgaag
    15001 atacactaaa attagccgaa aataacgcta aattggcaat tatgatgatt ttaggtaact
    15061 tagataagca gaaagccgaa gatttattaa gccaaaatca agggcgatta caaaaagcgt
    15121 taaaatagaa gtatgtctgc tctccccttg tgggagagag acagatcaat cattcattca
    15181 gaatgattga tcagagagag gggaggcaga tttaagcaaa taaatggcga tgtttcacta
    15241 gttcttcttt ggttaaactg aacaccccta agccaccgtg ttcaaattcc agccagttaa
    15301 acggcacact ggggaattgt tcgattaaat gcaccatact gttgccgact tcgcagacta
    15361 gcacgccatc atcatttaag taatcagcgg cttgagcaag aatccgcttg gttaaatcta
    15421 acccatcttt gcccgagcca agagctaatg ccggctcgtg atggaactct tcgggcatat
    15481 cgcctaagtc ttcttcatca acataaggcg gattagtcac aattaagtcg tatttatctt
    15541 gcggtaaatt gttaaacaga tcggaacaga tcgggaaaac tcggtgagac acctgatgac
    15601 gctcaatatt aatttgagca acgtctaagg catcaaggga aagatcaacc gcatcgactt
    15661 ctgcttccgg aaaacgctcg gcacaggcaa tcgcaataca accgctgccg gtacacatat
    15721 ctaaaattcg atgtggctcg tttttgataa tgcctttaaa cccttttttg atcagctcac
    15781 caatcggtga acgtggcacg atcacacgct catcgacata atattcaccg ccacaaaacc
    15841 aagccgagtt ggtaaggtat gctacaggtt tgcgagagcc taaacgctca cagattaaat
    15901 tgatgatacg ttctttctca actcgagtta agcgagagga ataaagtgtt tccggtacat
    15961 caaacggcaa ataaagccct gccaacacta attgttgtgc ctcgtcccac gcattatcgt
    16021 agccgtgccc gtaataaaga tcagaggcat taaaatagct atacccccaa cgcatcatat
    16081 cttgaatagt gactaaatca ttcacaatgg gcagggcgga aatttcatca agaagttcgg
    16141 tattatattt aaacattggc gtgccttttt tcgtattgtt aaaatggctg tgttatacca
    16201 cattttgctt tgtgttagaa tgtaaaaatg aataagaagg aaaagataat gaacgatacg
    16261 ttattagacg atgaatttgc attattcaga gaggcagcaa aaggcacgaa aaagctgaca
    16321 caaaatacct ttgtgccgaa agcggaacct cgcaagaaat tgcaagaatt gcgagaatta
    16381 aaagaaaaag ctgatacaga attttatttc tcggatgaat atgagccttt gctgaaagaa
    16441 gaaaatgaaa aagtgaaata tctgcgagaa gatgttgatc cttatattct caaacagtta
    16501 cggcgaggcg atttccaacc cgagctgttt ttagatctgc atggtttaac tcgagaaaaa
    16561 gcgaagaaag agttggcagc gttgatttta gcctgtgagc gggaaaaggt atattgtgcc
    16621 agtgtgatga ccggctttgg cactcgcacg ctcaaagatc aaattccacg ctggttggtt
    16681 cagcacccaa aagtaatggc gttgcaccag gccccgaaag agtggggcgg agatgcctct
    16741 attctaattt tggttgagca gcctgaaaat cctgaaaaaa tgtttgggcg ttaaaattcg
    16801 gctgaattgc caatttttta ttaaaaacga ccgcttgtgt atcattaagg agaaatgatg
    16861 tcagaacaaa ctttccacca acttacagca ttattagatt cgcatcgagc tcgctatcga
    16921 gtggtaggac atccttctgc cgggaaatcg gaagaagtgg caaaaattcg aggaacagaa
    16981 atcgggcaag gggcgaaagc cttagtttgc aaggtaaaag gcaatggggt aaagcaagct
    17041 gtgcttgcta tattacctgc tgattaccaa gcggatttaa caaaaattgc agagcatctt
    17101 ggtgggttaa gagcctcact tgccagcccg gctgaagtgg cagaattgac cgattgtgta
    17161 tttggggcaa ttccgccgtt tagctttcac cccgatttat tattggtggc tgagccaagt
    17221 ctgtttgagc gttatgctga attagccttt aatgccggta cgttggaacg ttcgattatt
    17281 ctgaataccg aggattacca aaagatagtt aatcctgtgt tggttcaatt cgccaaaagc
    17341 taggttatgg ggcgaaaaac tccacgattt tgccaatagc gatatccatt aatttagggt
    17401 tagaaaaagc gtgatctgcc ccttcaatcg ggagcagttc aatcacgtta ttatcggcaa
    17461 actgctgtga agtgcttaac gccaccattt catcttccgt gccgtgcaga attaaaattt
    17521 gctcggcata atccaaataa tcgttttggg taatatcggt tagctcatca aaaaaggctt
    17581 ggctgatttt catctggcga tcaaaccccc acaaaatttc tcgccctttg gcaagttttt
    17641 gccgttcctc ttctgacaag cggttcatta acgaatggta gatttgtact gccggtgccc
    17701 gcaatgcaat tttccgaaac ggattgcctt tttccgccag atatttcaag gttaaatagc
    17761 cgccaaaact agtgccgtag gcatacagat ttttagcatt caggctggtt ttggcataat
    17821 caatcaccag ttgcagataa gtaatggatt cctcaaccga gagtttttta cgggcatcat
    17881 caccgtggca agggaaatca aaggcaaggg cagcgtagcc tttatatttt gagctaaggc
    17941 gttccccaaa tttggtattc gatttcagat ctttagacga accaaagccg tgcaacacaa
    18001 tcactacatt ctcgatctgc tgcaattctt tttcataaaa cagtttacag cgaatgctga
    18061 gaccctgttc attaatctca aagcgttttt ccattttatg ttaagtattg aaattgaaga
    18121 tgacaaaatt ttagcactat ttgagtgcaa gcggtcggat ctctcgcaaa atttgcaaat
    18181 tttccggtaa atttaaccgc ttgtactagc caaaatttaa gcatatttat agaatacagc
    18241 cttcgttttt aaaaggagaa atgaaatgtt acaacttatt ttagcgattt tatgtagcgt
    18301 gactgtaggc gtgttgatta aattcgcccg ccaaaaaggg attcgtatcg accaaagtat
    18361 tgcggtgaac tatatcgtga ctaccacgat gacgttttta ttactaaaac cggattacca
    18421 agggcagtcg attaccgata ttattgctaa taacccgact tcctatattt ttgtgatttt
    18481 aagtatcaca ttgcctacta ttttcttggt gcaagcaaaa gccctagagt ttgccggtat
    18541 tatccgaacc gatgcggcac aacgtttatc gctgttcctg ccgattttgg cggcattcac
    18601 catttttggt gagcaggtta cgcaaaataa attaattgca cttctgttag ctttcgtggc
    18661 actcggttgc ttattatgga aaggcaatca gggaatggaa aaaggcggaa aaattgcgat
    18721 tatcagcctt gctctggttt gggtaggcta tggcgtgaac gatattttat ttaaacagat
    18781 tgccaaatca ggctctgctt tccctgtcac cctttcgatt gcctttatcg gtgcaggctg
    18841 ttttatgttt atctatttgc tacttaaacg cactcaatgg cacgttccaa gtgtcttaac
    18901 cggcttattg ctaggcgtgt tgaacttcgg caatattctg ttctatattc aagctcacca
    18961 agccatgaaa gatgacccaa ctttagtctt cactggaatg aacttagggg taatttgctt
    19021 aggcactttc gttggagcat tcttctttaa agagaaaatc cacaaagtga actacttagg
    19081 cgtggcgatt gcgattgtgg cgattatttg cttgttttat tggcggtaaa tatactttcc
    19141 aaaattaagg gcgaacataa tgttcgccct taatttttga gtaatatagt gtaaaatatt
    19201 caataaattc gaccgcttgt tgtaccgatt catatttcat aaaggacaaa aaatgaagct
    19261 aaaagcctta tctacactca ttgcctcttc aatgctatat agtcagagtt ttgctgtacc
    19321 gccggaaaaa acagctgaag agccacagcc ctttttcaat aaaaccgaat ctgggtatga
    19381 tttagtcttt aatgatcaaa actatcgttt aattgaaacg gaattaaatg gcgagaaaat
    19441 ccaattccgt gcctttgagc ggattgtgta tgtgaacaat ccgattgagc cagattacca
    19501 aacaattaat ctgtatgtgc cggaagctta ctacaataat ggcgaaatca atggctacca
    19561 agcggatacc gccccgatct tcttgccaaa ttcagtgggg ggctatatgc cggcaaaagc
    19621 ggcaagttat gataaaaaaa gacgtgacgg ttcaccaggt acgattttgg tggcgttatc
    19681 taaaggctat gtggtggcaa gtgtgggagc aagaggacgc acgctacaaa aagagggaaa
    19741 atacaccggc aaagcacctt ctgccattat tgattcaaaa tccgccgccc ataaagcgtg
    19801 tcggttcgag tccgaccact ggcaccactc actatgtaaa atttagtttt acatagtttg
    19861 ctgtaagcat ttg
//
LOCUS       DANMGB010000029        19784 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.029, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000029 DANMGB010000000
VERSION     DANMGB010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19784
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.029"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            109..867
                     /locus_tag="PXG19_000774"
     CDS             109..867
                     /locus_tag="PXG19_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066097.1"
                     /translation="MTTPLDLQLGPLRSEITFTLHTQYAHKLWMGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKNSGITRRDYQENNARYQAAVKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNGIVEEEQPVETHITTQANESQE"
     gene            876..1385
                     /locus_tag="PXG19_000775"
     CDS             876..1385
                     /locus_tag="PXG19_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL6066098.1"
                     /translation="MNLISDEIYRQLVKDSGLNASLKQLFSHFDTVSDYAVLQEQIQQ
                     ARAYFMNAQDGMVQYVRSEFSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDESVPVDVRQKVVAVEKDRILINMQISVFNHILRQLVDCTEKLKEVDNAVAKSGLY
                     PLKNPVCNP"
     gene            1491..1691
                     /locus_tag="PXG19_000776"
     CDS             1491..1691
                     /locus_tag="PXG19_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066099.1"
                     /translation="MANVKMKFSVEIDGEVIIQHEIEEQAEKRSYFSQERKLAKEIIN
                     KMNEFYSDRWIDAKPWIASDDK"
     gene            complement(1807..2010)
                     /locus_tag="PXG19_000777"
     CDS             complement(1807..2010)
                     /locus_tag="PXG19_000777"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066100.1"
                     /translation="MELRKFPHHIIFIEQAKYGLQNYLLFELLTRTGQAVYFKHPIFH
                     TPNKEMRIVFVQDHKFLSLWQNK"
     gene            2119..2637
                     /locus_tag="PXG19_000778"
     CDS             2119..2637
                     /locus_tag="PXG19_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6066101.1"
                     /translation="MRYIKYSLLLISTMIMSGCAELSAINDKVGDWAGQMNQTLYGSK
                     ESSVEQHNGRQVYIKTRNGKYVYQDSGTLQLKQNIDEVFLKVRREFGFRPTNADSDAR
                     KVYHTVQGTFYHVSGYFKSDVDNDGVDLGENYLEVIIEKGSKGTVNVEWKATGSTRWL
                     DSTKQRLLNTLK"
     gene            2798..4849
                     /locus_tag="PXG19_000779"
     CDS             2798..4849
                     /locus_tag="PXG19_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6066102.1"
                     /translation="MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGH
                     LVEQYQPEDYDEVWKRWAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAH
                     YSLAVQLATASDETFVAGLSIPEQYLDESGLCLDSRVIQQAEAQIKQVGIAKVITVET
                     KREKKAPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QLTEVPMVIRSLVAADSELQTLLPRLNLQQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLETDKTIATLQSSGHTLIARGNVIVSQGWRILFGKN
                     ADEDVGSDDEKQGLPALTANQQCRVTHSEVRTLQTKPPAHYTEGTLLEAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLIKKKKSLMASAEAIALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDDFMQRQETFVRQLIGNCMQQGMSLGNIEIRKCPEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSTSNKSTKKNSSLNVLDQLNKLRSQ
                     L"
     gene            5670..6101
                     /locus_tag="PXG19_000780"
     CDS             5670..6101
                     /locus_tag="PXG19_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6066103.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            6119..7111
                     /locus_tag="PXG19_000781"
     CDS             6119..7111
                     /locus_tag="PXG19_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066104.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            7108..8097
                     /gene="oppF"
                     /locus_tag="PXG19_000782"
     CDS             7108..8097
                     /gene="oppF"
                     /locus_tag="PXG19_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL6066105.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(8201..8959)
                     /locus_tag="PXG19_000783"
                     /pseudo
     CDS             complement(8201..8959)
                     /locus_tag="PXG19_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(9089..9730)
                     /gene="bioD"
                     /locus_tag="PXG19_000784"
     CDS             complement(9089..9730)
                     /gene="bioD"
                     /locus_tag="PXG19_000784"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL6066106.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(9748..10503)
                     /gene="bioC"
                     /locus_tag="PXG19_000785"
     CDS             complement(9748..10503)
                     /gene="bioC"
                     /locus_tag="PXG19_000785"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL6066107.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(10507..11154)
                     /locus_tag="PXG19_000786"
     CDS             complement(10507..11154)
                     /locus_tag="PXG19_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL6066108.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(11151..12314)
                     /gene="bioF"
                     /locus_tag="PXG19_000787"
     CDS             complement(11151..12314)
                     /gene="bioF"
                     /locus_tag="PXG19_000787"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL6066109.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(12311..13612)
                     /locus_tag="PXG19_000788"
     CDS             complement(12311..13612)
                     /locus_tag="PXG19_000788"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL6066110.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
     gene            13754..14641
                     /gene="psd"
                     /locus_tag="PXG19_000789"
     CDS             13754..14641
                     /gene="psd"
                     /locus_tag="PXG19_000789"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755522.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6066111.1"
                     /translation="MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAV
                     THFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADG
                     RISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
                     CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITA
                     SMSTVWAGVINPPRPEKITTWTYEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLA
                     SHLQVDSPVRMGEILAHQK"
     gene            14666..15220
                     /locus_tag="PXG19_000790"
     CDS             14666..15220
                     /locus_tag="PXG19_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6066112.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(15280..15603)
                     /locus_tag="PXG19_000791"
     CDS             complement(15280..15603)
                     /locus_tag="PXG19_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066113.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(15627..16730)
                     /gene="proB"
                     /locus_tag="PXG19_000792"
     CDS             complement(15627..16730)
                     /gene="proB"
                     /locus_tag="PXG19_000792"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6066114.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            16896..17884
                     /locus_tag="PXG19_000793"
                     /pseudo
     CDS             16896..17884
                     /locus_tag="PXG19_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            17959..18606
                     /locus_tag="PXG19_000794"
     CDS             17959..18606
                     /locus_tag="PXG19_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL6066115.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            18630..19037
                     /locus_tag="PXG19_000795"
     CDS             18630..19037
                     /locus_tag="PXG19_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6066116.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            19135..19485
                     /locus_tag="PXG19_000796"
     CDS             19135..19485
                     /locus_tag="PXG19_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066117.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
BASE COUNT         5894 a         4154 c         4080 g         5656 t
ORIGIN      
        1 tgattaaaaa ataaacagag tagacagtgt ctacaaaggt taaaaaaata gacaatggaa
       61 agcccctttc caaaggctaa aaaacaatca aataaacaag gagcatatat gaccacacca
      121 ttagacttac aattaggtcc acttcgtagt gagatcacgt ttacgctaca tacccaatat
      181 gcccataaat tatggatggg gagaccaatg attcgtaatg aggaaggcaa agtaactcaa
      241 tcctccatta tcagcgtacc aaattgcttt gcaatgctaa cccaaattca acgggctgca
      301 tcagaagatg atccttatgc tgatgattac cttattcaat tcgaggaaag tgtgatcaat
      361 tatcggaagg aaattcaaaa actcaccaac gatattgtca cgctctacgc caaaatgttg
      421 ccggagggaa tttctattga acgctgtgcc aatatttccc cgatttctta cccgatttat
      481 gttaattcac agttaggcta tcagttgctt tacttacttg gtgattttga cagtctttgt
      541 cgctcagtaa tgacagctgc tcatattgcc attatcaatc gtgcagaagc tcaagattgg
      601 attgaagcag gtgcaagatt aattcgtaaa tgttttggga ttgttgaacg ttataaaaat
      661 tccggtatta ctcgccgaga ctaccaagaa aataatgctc gctatcaagc tgctgtaaaa
      721 cgaatgggct atacattgtc agatgctgta cttaccggtg agcatcgtgc tgaatttgct
      781 cctttcatca agcaaaacgg cattgttgaa gaagaacaac ccgtagaaac ccatatcacg
      841 acacaagcaa atgaatctca agaataagga gtgatatgaa cctcatttct gatgaaattt
      901 atcggcaatt agtcaaagac tccgggttaa atgcatctct gaaacagcta tttagccatt
      961 ttgatactgt ctcagactat gctgtattgc aggagcaaat acagcaagca cgggcttatt
     1021 ttatgaatgc acaggatggt atggttcagt atgttcgtag cgaattctct ccccttgcgg
     1081 tctatatgat taaagataag gcttcttctt ccggtggtac gtttttacgc tggcgcagta
     1141 tgcagaatgc cagaaccggt ggcacagttt ggcaaccgat tgtagatgat gaatcagtcc
     1201 cggtcgatgt gagacaaaaa gttgtcgcag tggaaaaaga cagaattttg atcaatatgc
     1261 agatttccgt gtttaaccat attttgcgac agttggttga ttgtactgaa aaactaaaag
     1321 aagtggataa tgcggttgca aaatcaggtt tgtatcccct gaaaaatcca gtttgtaatc
     1381 cctgaaaaag taaggtttgt aaagcctgca ttaaaaggcc ttttaaaggt aaggggacaa
     1441 gcccccttac ctttcacgaa gaaaatgcct ttattatttc ggagtaaaca atggcaaatg
     1501 taaaaatgaa attcagtgtt gaaatagatg gtgaagttat cattcaacat gagattgaag
     1561 agcaagccga aaaacgctct tacttttcgc aagagcgtaa attggccaaa gagattataa
     1621 ataaaatgaa tgaattttat tctgacagat ggattgatgc aaaaccttgg attgcttctg
     1681 acgataaata aaagcaatga gcatcatcga ttacaggttt cataaattga tttcgctaag
     1741 gtatttaact taatagcaat aaaatcttcc tgagtgtagg acgatttatc ccattcttta
     1801 ataaggttat ttgttttgcc atagggataa aaatttatga tcttgaacaa agacaattct
     1861 catctctttg ttaggggtat ggaatatcgg atgcttaaag taaaccgctt gtcctgttct
     1921 tgttaatagt tcaaagagta agtaattctg taatccgtat ttagcttgct caataaagat
     1981 aatgtggtga ggaaattttc ttaattccat aatagtccct agcattttct ctcttactac
     2041 ctaaaagaat tttaagtaga ttttaaccgc acttttgcaa aaaatgaatg cagataaccc
     2101 gcttgtaagg agaattccat gcgttacatc aaatatagct tacttctcat ttctactatg
     2161 attatgtcag gttgtgccga actttctgca attaatgata aggttggaga ttgggcagga
     2221 cagatgaacc agactctcta tggttctaaa gaaagctcag ttgaacagca taatgggcga
     2281 caggtttata ttaaaactcg aaatggcaag tatgtctatc aagattccgg cacattacag
     2341 ttgaaacaga atattgatga agtcttccta aaagttcgcc gagaatttgg cttccgtcca
     2401 accaatgcag atagcgatgc acgtaaggtt tatcatacgg tacaaggtac cttttaccac
     2461 gtttccggtt atttcaaatc tgatgtagat aacgacggcg tggatttagg tgaaaactac
     2521 ttagaggtta tcattgaaaa aggcagtaaa ggcacggtga atgttgaatg gaaagccaca
     2581 ggtagtacaa gatggctaga tagtaccaaa caacgtttac ttaatacatt aaaataagaa
     2641 ctcatatcgc tcctagaacc tcttcccagt ggaaacactg ggattttttt atcgttctca
     2701 tctctcaatt tattgcattc tacaagataa taagtcgttg aatgctattt aatcagcaca
     2761 ttactattgc ctatccgtat tgattttgga aaatagtatg aaactgttta tttgtgaaaa
     2821 gccctctcaa gcccgagatc ttgcaagtgt attaggtgct acatcgaaag gggatggact
     2881 attggcaact aatgataagt ctattattgt aacttgggga tttggtcatc ttgttgagca
     2941 ataccaaccc gaggattatg atgaagtttg gaaacgctgg gcatttgaaa cattgccgat
     3001 cattcctgct caatggaaaa tggctcctaa aaaagagtcc aagaaacaat acaatgtagt
     3061 catcggatta attaagaaag cctctttggt tgtgattgca accgatgcag acagagaagg
     3121 tgaaatgatt gctcgtgaac tgttagattt agccggatac cgaggacaaa tacagcgttg
     3181 ctggctatca gctctcgatg atgccagtat ccgaaaagct ctccaaacac tcaaatcagg
     3241 taaagaaacc gaggcacttt actacgctgg tatgggacgt agccgctcgg actggctgat
     3301 tggaatgaac ttctcccgtc tatttacctt aatggcccaa gcaaaaggct attccggtaa
     3361 gccattaagc gttggtcgag tgcaaagccc aacactagct cttgtggtca atcgagacag
     3421 agagattgca aatttcgtgc ctaaagctca ttactcctta gcagttcaat tagcaacagc
     3481 gtctgatgaa acctttgttg ccgggctttc aatacctgaa cagtatttag atgaatcagg
     3541 gctttgcctt gatagtcggg tcatacaaca agctgaagct caaattaaac aagtaggcat
     3601 agccaaagtg ataacggttg aaaccaaacg agagaaaaag gcaccgccgt tgctttatgc
     3661 attaagtgat ttacaagggg aatgtaaccg cttgtttggt tttggggctc aacaagtact
     3721 tgatattgct caatcacttt atgaggagca taaaattact acttatcccc gtaccgattg
     3781 cggctatcta cctgaatctc agcttactga agtaccgatg gtaattcgtt cattagtcgc
     3841 cgctgattca gagttacaaa ctctattgcc tcgattaaat ctacaacaaa aaagtcgggc
     3901 ttgggatgat aaaaaaatta ctgctcacca cggtattatc cccactatca aaaaagcaga
     3961 tttaagcaag ttaagtgagg aggagatgaa ggtctatgat ctcattcgcc gtcgctatct
     4021 cgctcaattc ttaccgcact tagaaacaga taaaactata gccaccttgc agtcctctgg
     4081 acacactctg attgctagag gaaatgtgat cgtttctcaa ggttggcgta tcctgtttgg
     4141 taaaaatgca gatgaagatg ttggtagtga tgatgagaaa caaggcttac ctgcattgac
     4201 ggcaaatcag caatgccgtg ttacacattc agaagtccgg acattacaaa ccaaaccacc
     4261 ggcacactat actgaaggaa cactactcga agcaatgaaa aatgcagctc gctttgtgac
     4321 tgatccaaga cttaaacaac ggttgcgtga aacggaggga ttgggtacag aggcaactcg
     4381 tgccggattg attcaagggc tcattgacaa aggtttttta attaagaaga aaaaatccct
     4441 aatggcttct gctgaagcga ttgcccttat tgatagccta ccggatttat taaaaaatcc
     4501 cggtttaacg gctctttggg aacaggcact taatcaaatt gctgaaggca gtatgaccct
     4561 tgatgacttt atgcaacgac aagaaacctt tgtacgacaa cttatcggaa attgtatgca
     4621 acaaggtatg tcattgggta atattgaaat tcgaaaatgc ccggagtgtg gtaagccaat
     4681 gcggaaaatc aatcacgcta aaggtacatt ctggggttgt acaggatatc cggattgcca
     4741 acataaagaa gcagataaaa aagtcaaatc gacttcaaat aaatctacca agaaaaatag
     4801 tagcttaaat gtgctagatc agctgaataa attaagaagc cagttataaa tctaagcaga
     4861 ttatggtatt atcaaagtgc aaagaacccg tttaatagat tgtcggttat caatctatac
     4921 cagccgaaat gtctcccagc attctgaaag ggaactctgt aaaattacag gaatgccacc
     4981 taaacaataa atggataatg ccagccactt tatccgttgt attttgtcac atgcgtgatt
     5041 gcaatgtcat aatattaccc gacttgggga tattatgaca ttgcaatcat tgctcacttt
     5101 tcttagcctg agcccacagg tgaataaagg gtgccgtttg tgtcctcgat gatgccacag
     5161 atatgccgat taaagaccac aaggtaatcg ggtaaattac gaacgaaaat atcaacattg
     5221 tcacgaaggt gctgctattt tcaatatagt aacttatatt ggtctaactt aaatttcatt
     5281 tattcttcaa aagtacaaca ccgttggtaa gtgatttatc aacggtgttg tcatttccaa
     5341 ttctctaaaa tcaaaattca attctcaatt aactttatga ttcaatatga ctaaattatc
     5401 ctcaatttaa gacgctgtat ataacagcac ttaataagtc gcataactcc tgagaagcga
     5461 cggctatcct tagaggtagt tgagttattg ccaaaatgtc tcctagcatt ctgaaaggga
     5521 acgccacttt tgtgggaatg ccacctaaac cctctaccat ctcagtgaag catcattgag
     5581 atttcatttt acttccacct cgcggggaac atttttcccg tgttgggcaa ggatgtttct
     5641 ccgctttttt acatttggag aaacaaacta tgacaactca aacttctact caaaaaaatt
     5701 acttcaacct tcatacaaca ggcattggct atctaaacga tattcgtttg gtagagccta
     5761 aaaaaggaaa tcctttttat gcctgccgta tagcagctct ggttggcgaa tctgactctc
     5821 ctgagtacag atattttgat atgaatgtag tcggtaaaga gactgaaaca cttatcaaaa
     5881 gatgccaaaa agcagttagt gaagagaaaa aagtgcttgt gtcatttgta atggctgatt
     5941 tgtggttcga tacatttact tactcaacag atagtaaatt ccacaaaaaa ggcgataccg
     6001 gtgtatctgt aaaaggtcgc ttaatccgca tcaaaatgat taaaattgat ggggaaatag
     6061 cctaccaaga aaagccaaaa tcagatgagc aatctgagta attttaccta agcccgacat
     6121 tttatgttgg gctttattac tcgatgtaca agatttgcgc gtaactttta agaccccaga
     6181 tggcgatgtt actgccgtca atgatctgac tttttcttta aatgccggtg aaaccctcgg
     6241 cattgtcggc gaatctggct caggaaaatc gcaaaccgct tttgctctaa tggggctatt
     6301 agcagataac gggcgaattt caggatcagc aaaatttaat ggacaagaaa ttctcaactt
     6361 gcctgaaaca caacttaacc gcttgcgtgc tgaacaaatt gcgatgatct tccaagatcc
     6421 aatgacctcg ctgaaccctt atatgaaaat cggcgaacag ctaatggaag tactgatgtt
     6481 gcataaaggc atggatcata aaactgcgtt tgaagaatcg gtacggatgt tagatgcggt
     6541 gaaaatgccg gagtcacgta aacgtatgaa tatgtatccg catgaatttt ccggcggtat
     6601 gcgtcagcgt gtgatgattg cgatggcatt actttgccgt ccgaaactcc tcattgcgga
     6661 tgaacccaca actgcgctcg atgtgacggt gcaagctcaa atcatgacct tattaaacga
     6721 attaaaaagc gagtttaata ccgccattat catgattact cacgatctcg gtgtggtcgc
     6781 aggaatttgc gataatgtgt tggtgatgta tgtaggcaga accatggaat acggcaccgc
     6841 tgagcaaatt ttctataccc caagccaccc ttattctatc ggcttaattg gtgcagtgcc
     6901 tcgcgttgac ggacaggaag aagaactcat tactattccg ggtaatccac ctaacttatt
     6961 acgcttaccg agtggctgtc ctttccaacc acgttgcgtt catgcaacta aacagtgcct
     7021 caaagcaccg gcgttaacct tgttaaatga tcaacgttta cgcgcttgtt ttgtccctgc
     7081 cgagcaatta atccgaggta acgcatcatg aacacagaga aaaaagtgat cctagaagtg
     7141 aaggatttaa gcgttcattt caacatcaaa gatacgaaat ctttattctt tgctaaacac
     7201 caaactttaa aggccgtcaa tcatgtctct tttcagttat acgaaggcga aaccttaggt
     7261 gtggtcggtg aatcgggctg tggaaaatca actctcgcac gcgcgattat tggcttagtg
     7321 gaaagctctg gcggtaatat tttatggcta ggtaaggagt taactcaaca aagtgcgaaa
     7381 gaatggaaaa cgatccgtag cgatattcaa atgattttcc aagatccttt agcctccctg
     7441 aatccacgga tgaccattgg cagtatcatt gccgaaccat taaaaattta ccaaccccat
     7501 ttaaccgcgg aagaagtgaa agaaaaagta cgcgcgatga tgatgaaagt gggcttatta
     7561 cctaacttaa tcaatcgcta tccacatgaa ttttcgggtg gacaatgtca gcgtatcggg
     7621 attgcgcgcg ccttgattgt ggaaccaaaa ctcattattt gcgatgagcc agtgtccgcc
     7681 ttagatgttt caatccaagc acaagtagtg aatttattga aatctttaca acgcgaaatg
     7741 gggctatcat tgattttcat tgcacacgac cttgctgtgg tgaaacacat ttccgatcgt
     7801 gttttggtca tgtatcttgg taacgcggtg gaattaggtg actatgaaca agtctatcac
     7861 gatactaagc atccttatac caaagctttg atgtctgcgg taccgattcc tgatccgcaa
     7921 ttagaacgca ataaacaaat tcaattgctt gaaggcgatc tcccttcccc gattaatccg
     7981 ccgtcgggct gtgtgttccg cacccgttgc ccactggcag atcaacactg tattgcagac
     8041 aaaccgctcc tcaaaggacg agataatcac gttgttgctt gttttaaagc cgagtaatac
     8101 acacaaccgc acaaaaaagt gcggttgttt ttttgcgaat attcacagtc agactttcgt
     8161 gatactttcg ctctgagata aggattacga tacagagaag ttattcaaca atcacacgtg
     8221 cattgatcgg ttgcactgga cgattattgt gtcctttcat caaggtcgca aacgcctcaa
     8281 cttgagattg gctaatgttg tcatagtgtt ttaacactaa ccaatttaca ccttcagaac
     8341 aaggtggtgt agttaatgac ccgctgaaac gatagtaatc gcgttttttc ggaattaatg
     8401 ttgctgggtc aaaagcggta ctaagcgtat atttctcccc tgctttttgc gggaagtttt
     8461 gccaaattgg ggctaaccat tggttttcac ttgataatac atagagcacg ccaagcacag
     8521 caagattccc ttcattgtct gcgtgtacaa aatgtgcttc catcgggaag gatttacctc
     8581 aaattaagtt ttcactcggc acatggaaat ggaattgttt aagggtaaaa gtctttccat
     8641 taagctgcat gcgattactt gcctctttga aatccacttg aatagtatgc ccattattga
     8701 caatctccac attggaaggt cgataatcca gcttaatcgg cgctaactta ccatcaatcg
     8761 tatgcttgat atctattggt gtttggtttt taccttcgcc acaaatacgg aatttgggtg
     8821 aaagttcagc ccaatgttct ggcgattcgt gtccggtgta tccccaatgc gtgtgcgttt
     8881 cttctttctt aagggggctt gtacacgctg tcaatgctaa tgcacctaac gtaagcacaa
     8941 aaaggtttga ttttttcata gcctagctcc tgattaaaag agatgaattg atgagacaac
     9001 ctaaactcaa tgatgcctta atccgagacg ctttcatctt aggcaaaaca acactccatt
     9061 tcaagtataa cttgctcaag aatatatctt agaccgaaat caaatccatt atttcaaata
     9121 aggtattagg cgagtatttc tctaaataac gacgtaaaaa atgttgtgtt tcttggctaa
     9181 tgacttgatc tgtttccgga tacaagttgt atatcacagc atgcacactt actcttttgg
     9241 agttgagtac ttgtaaactc aataaggtat gattaatact acctagcttg ccagaggtaa
     9301 ctaaaatcac ggggtattga tgctgacaaa gataatcaag ggtggtttct tcctcattat
     9361 aaggtacaca caagccgccc gccccttcca ataatacata atcatatttt tcacacaaaa
     9421 gtgcggtgca ggtttcaatt tttttacgtt cgatcgtgcg cggttctaat ttcgcggcta
     9481 aatgcggtga gcaaggataa tcaaacacgt aaggacaagt gataccttgc ttatcttctt
     9541 ctgtaagctc aataccttgt atttttcggt gtatgagtaa atcttcggca attcctcggc
     9601 agcctgtttg gatcatcttt tgcgtgatga cacttgcgcc ttgttgcatc agtttcttgg
     9661 cgtaccaacc tgtggcgatg gttttgccaa tatcggtgtc gatgccagtg ataaaaaaaa
     9721 cctttgccat actttttcct tctaagatta agttaaacgc gccagcacat acatcggcgt
     9781 gtaagtgagt tctactttgt gttgtgcgtt acggtaatgt tgttgatatt gttggcaaaa
     9841 ggcgtgcaat tgcccttttg tccacctttg ctgctgtgtg gcagtaacgc ctgtttgttt
     9901 caaatgtttt aacaccgcta agggatcatc aaagtgcaac acaatctcct cgtgttcgag
     9961 ggctaaaatc tcaaattcag gcactagcca cttttgccag tcctcaagac gtggataagt
    10021 taaccccaca ccggtgaggt gtttgatctg tgttaaattc tcgggcgtga aagtactgaa
    10081 taacaaaaat ccgtgctttt ttaagcgcac tttacaacgc gcaataaaac ccgctttatc
    10141 ttcaaaccat tgcaccacgg aagcactggc aatcaaatca tactgctgcg gaaagggaag
    10201 ttgttccgca tcgccacaat ggaagtgaaa aggttggggc aacactgatt gcagatgctc
    10261 tcgcatatcg caaaggtcat tcagctccca gtgttcaacc tgcaactgtg acattaattg
    10321 cttcgttaat ccaccagtac cacatccaat ctctaatgca cgttggaatg cttgtctgtc
    10381 gatatacgac aataaactaa gcaaacgttg gtgaatctgc tgttgtgctc tcgcttgctg
    10441 atcatagttc gatacagcgg cagaaaaacg ctgtttaatg cgtcctttat caatacgatc
    10501 catgtgctac aaccaacaag tttcccaatg ggtgaagtga ggaaacaaca aatgctcccc
    10561 tgcgatttct gttattgcac aacgatcctg ccaataagcc cgctgatttt gtgcagggaa
    10621 aattttatct tttgagccga caatcgcctt gctccacgag attaaatctg tacggtgatc
    10681 ttgttgtaaa aaggtataaa gtgcggtcag ttcagcatga atttcctgta atgtgggacg
    10741 catggaatag tgctgataat ctcttaacag cgtttttgaa ccacaaatac gacgttcaaa
    10801 tttagtccga ttatcttcat ttaaaccaga taacgtgcca gcaaaaatgg cttcgggaat
    10861 accatattgg tcatcacaag gtaagcccgt gccattgatc gccgtagcag atagcagtgg
    10921 ataaccttgc atcacacgct ccgctaccca cacgcccatt gaccatgcca ccacgcgaat
    10981 atgttgataa gcggaaaaat caacatcgca atgcagatct cgataatcat agcaaaggca
    11041 taaatcataa ttttccggca gaatcaggtg ctcgaccacg ctcggcggtg tgccccaccc
    11101 tgcaaaatag acgatcagat tgtcgccttg ctgtgaaata tgttgtgttt tcattcagca
    11161 agctcccgta aacaagcaat aaattgttcc acttccgcca cttgcatatc tgcagtcagt
    11221 gaaaaacgaa tacgagaggt tccttttggg actgtcggcg ggcgaatcgg taagcaataa
    11281 tagccttgtt gttgcaaacg ttgcgccgtt cttactgtca gttcgttatc gcccaaaata
    11341 taaggtacga tacaactttc acttggcatc gggacttgaa aaatgtcaac aatcgcttgg
    11401 cgtaaatgtt gactaagctg agcaagatgt gcgcgttcgg cttgcaaatg tggtaattgt
    11461 tgaaagacaa aatgcgtcca tgccacatta aacggcggaa gtgccgtgga aaaaatcaat
    11521 gggcgcattt tattaaccaa ataatctcgg atcacttgat cgcaaatcac ataagccccc
    11581 atagagccca acgccttgcc aaacgtaccg actaaaatat caatttggtt gatacagcct
    11641 tgttgttctg ctaaccctag ccccttctcc cccaatacgc ctatcgcatg ggcttcatct
    11701 acatataaca tcacttgcgg atagcgctgt tttaatgcga ccaactgggt gaggtctgca
    11761 cagtcaccat ccatactaaa cacggattcc gtgaccacga taatccgctc aaaagtgcga
    11821 tcattttttt gcaaaatttg ttcaaggtgg acgtaatcat gatgacgaaa acgcacaaac
    11881 tcacattgtg ccaagcgaat gccatcaatc atactggcat gtaccagttt atccgccaca
    11941 atcagcgttt ttttgtccgc taaagcaggc aaaatcccaa tattagcatg ataaccgcta
    12001 ttaaatagca aggcagtttc tcgtccaaat gcctgcgcca ttaagctttc tagctcatca
    12061 taaatcggaa aagagcctgt taataaacgg gaggaagaag aagtcaatgc agggagttga
    12121 tcttggtatt gcgtgaaaaa tgcctgacgc aaggcttcgt tattggctaa acctaaataa
    12181 tcattggagg acatattcag catcgtattg tcctcacgtt gaataaaacg ccctcggtga
    12241 attagttggg gcagttggcg aaattgattc tgcgccttta aatcagctaa ctgctgctga
    12301 taatacctga tcatagagat tccttatgtg catattcttc ttgaagggtg cgaattgtgc
    12361 catgaattaa ttgagacaat tgatccgatg agatgatata cggtggcatc aaatacacta
    12421 atttgccaaa tggacgcacc caaacgccat tttgcacaaa gcgtggtggt aaacttgcca
    12481 tattgacagg cgccttcatt tcaatcaccc caatcgctcc aagtactctc atttcagcga
    12541 cacaatctaa ggcttccgct tggcgcaatt cttgacgtaa ttgctgttca atctgttgaa
    12601 tacgttgttg ccaagggctt gccaataaca atttgatact ttctgctgct accgcacacg
    12661 ccagtggatt tgccataaac gtcggaccgt gcataaaaca ttttgcctcg ccagaacaaa
    12721 tcacgtctgc taccgcttgg ttggtaatgg tagcggatag agttaaatac ccccccgtta
    12781 aagctttacc gatacacatc acatccggca cgacattggc atgttcacaa gcaaataatt
    12841 tgcctgtacg cccaaatcct gtggcaattt catcaaaaat cagcaaaatg ccgtacggtt
    12901 cgcataaggc ttttgcttgc accaaatact caggggaata aaaatacata ccacccgccc
    12961 cttgcactac cggttctaaa attaaacccg caatctcatc accatgttgt gccaataaat
    13021 cctgtaacgg ttgcatcgct tcgggttgcc aagcttgccc aaattttacc gggggttgcg
    13081 gtaaaaaata ttgcacgggt agccctttgg caaacaagct gtgcatgccg gtcacgggat
    13141 cacacacgga catcgcatgc caagtatcac catgatagcc cgaacgaatc gtagcaaatt
    13201 tatagcgctg tgtttcgcct ttagcatgtt gatattgcac tgccattttc atcgccactt
    13261 ccacggcgac cgaaccacta tcggcaaaga aaattttatc caaactttcc ggcaagatgt
    13321 tgaccagttg ctgcgccagt tctaccgctg gttggtgcgt taatccacca aacatcacat
    13381 gactcatttg actcagttgt tgcgtggcag cgtggtttaa acgggggtga ttatagccat
    13441 gaatcgctga ccaccacgat gacatgccat caatcaactg ctgaccgttt tttaactgga
    13501 tatacacacc ttcggcacgt tctactgcaa ataagggaaa atccgcattt aacgccgcat
    13561 aagggtgcca aatatgttgt cgatcacatt ctaaaagttg ctgctcattc atcgtttcac
    13621 ctcggttgtg aatcgccctt tcaactggcg taaattcacg caaatactta cataaacgga
    13681 ataacttgtt ataatcgcca agcatttggc ttttcaagcc cattattcta acttaaaaag
    13741 atgatttatt actatgaata tattagaaaa aaaagcacaa ctgagttact ggcaacggat
    13801 taaaattgcc tttcaatatg tgatgccaca actttattta acacgtcttg caggctggtt
    13861 tgcaaaacag caatggggtg ctgtcacaca ttttgtgatt aaattattcg cgaaaaaata
    13921 ccatgtggat atgagtgaag ctgcaaaacc aaatttcagc gactatgcga gctttaatga
    13981 attttttatc cgtccattag cggacaatgc ccgtccaatt aatcaaaatc ctaccgcact
    14041 ttgtttaccg gcagatggtc gtattagtca gttaggacac attgagcagg atttattgct
    14101 acaagccaaa ggacattatt tcagcttgaa cgatttgtta gctggcgacg aggcgctcgc
    14161 tcatcatttt aaagatggcg aatttgccac cacctacctc tcaccacgcg attaccaccg
    14221 tgtgcatatg ccttgtgatg ccaccttatg caaaatgatt tatgtgccag gtgacttatt
    14281 ctcagtcaat ccatttttag ccgaacacgt gccaaactta tttgcacgta atgaacgcgt
    14341 gatctgcgta ttcgataccg aatttggtaa aatggtccaa attttagtcg gcgcaaccat
    14401 taccgcgagt atgagcaccg tgtgggcagg tgtgatcaac ccgcctcgtc cagaaaaaat
    14461 caccacctgg acctatgaag gagaaagtgc ggtcaaatta ctgaaaggac aagaaatggg
    14521 agcctttcaa ttgggctcga cggtgatcaa tttatttgaa aaagatcgtg tgcaactggc
    14581 atctcattta caagtggata gcccggtacg tatgggtgaa attcttgccc accaaaaata
    14641 atttttaacc acaataggaa aaacaatgag tcaacaattt ttcgaccaag tgtcattaga
    14701 aagccaactt gaagtgagcg ccgaagccgt cgcgaaaggg atctttgatg tgttaaatca
    14761 aaatccacca gcacttgagt taaatgaagt gagtcatgcc ctacagactt tgcaacaaca
    14821 agcgaaattc aaagaaattg aagccgttgg tgcacaattc ttagctgaaa acgcgcaaaa
    14881 agcgggggta aatactacgg aatctggttt acagtatgaa gtgttagtgg ctggtgaagg
    14941 gcaaattccg gcacgcgaag acaaagtgcg tgtgcattac actgggacat taatcgacgg
    15001 taccgtcttt gacagctcag taaaacgtgg tcaacctgca gaattcccag taaatggcgt
    15061 gatcgctggt tggattgaag ccttgtccat gatgccagtg ggttcaaaat ggcgtttaac
    15121 cattcctcac aacctcgctt atggcgaacg tggtgctggt gcctccattc cgccattcag
    15181 taccttagtg tttgaagtcg aattattagc cattctttaa agctaaacgc tagacataaa
    15241 aaagtgcggt cattttccgc acttttttat gtctagcgtt tatcgtttca agccttgctg
    15301 atagccgctg ttccacgaat ggcggaactt gtccggcaca gccttgcccg tttgttcttc
    15361 acagtaagcc gttcgttgaa tcaacatttt ttgttggtgt tctcgaaatg attttcccac
    15421 acgatagccg tccaaatacc aatcatcatt atcttgacat gccatggtat taatccgttt
    15481 tgtattcccc gtcactgcaa aagatttgcc tgcctcaata cgttgcaccg catgttcaga
    15541 gtatgaagca cagctcacca gcgaacctag tacactgaat atcaatactg ctttccaatt
    15601 catcttgtta cctttctttt tctgatttat aacacaatca tatcgtctcg gtgtaccgca
    15661 accgccccat attcataacc gagaacctgt tcgatatctt gcgaatgttt gccttgaatt
    15721 aaatggagcg catcgctgtt ataacgtggc atccctaagg caacatcctt gccttgctga
    15781 gtacgaattt ttaccacttc accgcgtgaa aagcgccctt ccacgtttac aatcccagca
    15841 ggcaataacg atttatgttg tattaacatc gcgttttccg cccccgcatc aatggtaata
    15901 ataccggctg acggcgccgc atatagccat tgtttacgac tttctaagcg atctgcttgc
    15961 acactaaatt tggtgccaat ggcttgccca taagctaagt ccacaatcac attcgggcga
    16021 ttacccggtg caataatggt ttcaatgccg gagcgggttg ccacatccgc ggcactgatt
    16081 ttggtggaca tgccacctgt gcctaacgag gtgccacttc cgcccgcaat cgcgcgaata
    16141 tgatcggtaa ttttgtccac gtcggcgatc aatttggcgt ctggatgttt gcgcggatca
    16201 cgatcaaata aaccttgctg atcagtaagc aaatacaact gttctgcttg caccaaaatt
    16261 gccactaacg cggataaatt atcgttatcg cctactttaa tttctgacgt agcgacagcg
    16321 tcattttcat taatcactgg aataatctga ttgtctaata aggcgcgcaa agtatctctg
    16381 gcatttaaaa aacgttcacg atcttcaatg tcggcacggg tcaataaaat ctgcccaata
    16441 tgaatatcat aaatggcaaa caatttttcc cacgtttgaa tgagctgact ttgtcctacc
    16501 gcagccaata attgtttcga ggcaatcgtc ggtggcaatt gcgggtgatt taaataatga
    16561 cgacctgccg caatcgcccc tgaggtaaca atcactaaac gaaagcccgc ttgatgaagc
    16621 tgtgcgagct gacgcacaat atctatcata tgaggtaaat ttaacttcgc cgatccttgc
    16681 gtaagcgtac tggttccaaa ttttacaacg agtgttttgt cgattttcat cttctctatc
    16741 ttcttatttt tgtcgcacaa aattgaagct aacttaccat taatcatcag aaaaatcatc
    16801 tcgtttactt gctattttct atgatttagc acaaattttt tctcactaaa aggcatataa
    16861 taaagtttct tgatttttca gctaggaacc cgattatgac ctcaacctct tcacaagaaa
    16921 cggagcggca acgagaaatc actcgccttt gtgttcaagt tgcccaactc ttatacaaca
    16981 tggtgcagaa agtgccatcg ttgtgcaaat ggcacatcgc ttaggcttag ccctcggtgt
    17041 agatagcgta gaatgtgccc tcacgccaaa tgccattatt cttactacat tagcccaaga
    17101 ccattgcatc acgacagtcc gtaaaaacca agacaaagga attaatatgc aagtggttac
    17161 cgaagtgcaa cgtattgtga ttacagcaga acgtaaaatc tatgatatgc aacaagtgca
    17221 tgccaaactg gctcgcatta aaccgcttaa atacaatcgc tattttgtga tgttgatgat
    17281 tggcgtatcc tgtgccagtt ttgctcattt atctggtggg gacgcactag tttcattggt
    17341 tacatttctc gccgcaacac tcgccatgta tgttcgccaa tcacttgccg caagacacta
    17401 taacccctta attgtatttg cggtgaccgc ctttgtcgcc tcactaattg cgggtatcgc
    17461 gttgaaatat aacatcggca atcagcccca aattgccttg gcatccagcg tattattgct
    17521 cgttcccggc tttccactga ttaatgcact cgccgatatt ttaaaagggc atatcaatat
    17581 ggggattgcc cgttgggcac tcgcgacaat cctcacattt ggggcatgct taggcattgt
    17641 atttgcgctg agtttattct tagaggaaat ctgtatgcta aataaattca ttcaagatga
    17701 atttctacgg ctagatcaac gttatgcagc ttggtatcaa agtgaagaaa cggatgaagt
    17761 tgccagaatg gggattcaag aaagtgagcg gattttgaaa attctgtatg cactgaaata
    17821 taacgaagac cctatgcaaa atggtttagg ctatattgca tttatggcat caaaaggcca
    17881 ataatttact tatctcaaca atttacccac cggggaaact cctcgatggc gtttccccta
    17941 ctttatagga gaaacgctat gactattaac acttatgcaa aatttgcacc taccgttttt
    18001 gttgcaaaat gctctgaatc acataccaaa ggtgaaatta ttacgctaac cagcaaatat
    18061 ggtaatgaaa ccgaggttca agtacataat cttgttaaac aagatggcga gcattatttt
    18121 tattcattta ctcgttgtga tgggatggat agtcagtcat ttgctcaaca aaaagcagaa
    18181 cgctatcaag gctatgcaga taatgcagcc aaacgtagtc aagattgggt aaatgccgct
    18241 aatgaggggt gtgatttttt gagtttaggt gagccaataa aaattggtca tcacagcgaa
    18301 aagagacacc gtaaccttat tgaacgtaat gctcgccgta tggacaatgc ggttgcagaa
    18361 atgaacaaag ctgcaagtta tgaatctcgt atcgcatatt gggaaaaaat ggcaggaaaa
    18421 attgacctgt ctatgccgga aagtctggaa tactttaagt ttgaattgga taaagccaaa
    18481 acaaagcaca aagaattgaa ggacaacccc gagaaacgag agcatggtta ttcactgact
    18541 tatgctaaaa aagcagttaa tgaacttgag aaaaaagtaa aattagctga attactttgg
    18601 gcataattat ttacaaagga gatgacgata tgaatcgaca aggtatttat attaatggca
    18661 aacaggtgtt tgattcacaa ggcgaagata ttcaaagcat tggatttttt ggctgcaata
    18721 ttcaaacggt cgtaggcata aacaaaggaa gtattttagt ctcgtccaat agtaatcaat
    18781 tattggtgaa tggacagtcg attgaattag gttctgagcc agtcctcaaa attgaggttt
    18841 tgggcaatgt gcagaaactg agtgccggtg ccgcagatgt ctctattaca ggagatgccg
    18901 gcagtgttga cacagttagc ggtgatgtct ctattaaggg aaatgttgcc tcttatgtga
    18961 aaaccgtgag tggtgatgtt cgctgtcgtg ctattaccgg ttcggtggaa accgtctccg
    19021 gtgatattta tcgctgatat ttactcatct tattatttac caccctattg ggaagcaatt
    19081 ttcccaaggt gggcagattg tttcccattt ttattttgaa tttggagaaa catgatgacc
    19141 actattaacc tttcacaaca agaacgtgag ttagttgaat ttgtctggaa taaccgtaat
    19201 acaccttggt tttttcactg tagtgtatcg aatgtgtcga gaaataatac ctctcggcaa
    19261 attgctgtat gtgtcattaa ggataatcaa ttgattagcc ttgatgaatt gatagcaaaa
    19321 ttatgtggtt ataaactcag acaaaacgga ttatacgtta ctgttcataa tatggatgct
    19381 gtttttgata ccttatatcg ctttatgtgc aagctaaatg atgagatgga ggcaaatgaa
    19441 aatgtttgcc cttatttatc attagctcac tatgaagtgt tttgattggt atcagaacta
    19501 tccaccctgt cgggaaacaa tttttccgat agggcagatt gtttcccact tttattttga
    19561 atttggagaa acataatgat agacaccttt tttgaccttg acgacacctc atgctattta
    19621 ggtaactggg aggatatact gaaagaatat gatgattgtc tttcagttga agatttttgg
    19681 cattccgcta aagaatttga taccgtacct cattttggca acctatacca ggagcgtgtc
    19741 atccttaagt tgattgctcg attctgtatt gagctgaata ttga
//
LOCUS       DANMGB010000030        19694 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.030, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000030 DANMGB010000000
VERSION     DANMGB010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19694
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.030"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            41..712
                     /gene="arcA"
                     /locus_tag="PXG19_000797"
     CDS             41..712
                     /gene="arcA"
                     /locus_tag="PXG19_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL6066118.1"
                     /translation="MLKSIFEGEGYQVFQASNGEEMHSVLSTNEINLVLMDINLPGKN
                     GLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYITKPFNPRELTIRARNLLQ
                     RTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEVNKLPRSEFRALLHFCQH
                     PGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHPNTPEIIVTIHGEGYRFC
                     GNIEP"
     gene            732..1250
                     /locus_tag="PXG19_000798"
     CDS             732..1250
                     /locus_tag="PXG19_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL6066119.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(1328..2557)
                     /gene="serA"
                     /locus_tag="PXG19_000799"
     CDS             complement(1328..2557)
                     /gene="serA"
                     /locus_tag="PXG19_000799"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL6066120.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(2594..3253)
                     /gene="rpiA"
                     /locus_tag="PXG19_000800"
     CDS             complement(2594..3253)
                     /gene="rpiA"
                     /locus_tag="PXG19_000800"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL6066121.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(3398..4732)
                     /gene="glmM"
                     /locus_tag="PXG19_000801"
     CDS             complement(3398..4732)
                     /gene="glmM"
                     /locus_tag="PXG19_000801"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL6066122.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(4758..6290)
                     /gene="ilvA"
                     /locus_tag="PXG19_000802"
     CDS             complement(4758..6290)
                     /gene="ilvA"
                     /locus_tag="PXG19_000802"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL6066123.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(6551..7144)
                     /gene="slyD"
                     /locus_tag="PXG19_000803"
     CDS             complement(6551..7144)
                     /gene="slyD"
                     /locus_tag="PXG19_000803"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6066124.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(7247..7387)
                     /locus_tag="PXG19_000804"
     CDS             complement(7247..7387)
                     /locus_tag="PXG19_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066125.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(7459..8145)
                     /gene="aqpZ"
                     /locus_tag="PXG19_000805"
     CDS             complement(7459..8145)
                     /gene="aqpZ"
                     /locus_tag="PXG19_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL6066126.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
     gene            complement(8333..9052)
                     /locus_tag="PXG19_000806"
     CDS             complement(8333..9052)
                     /locus_tag="PXG19_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL6066127.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(9110..9847)
                     /gene="tsaA"
                     /locus_tag="PXG19_000807"
     CDS             complement(9110..9847)
                     /gene="tsaA"
                     /locus_tag="PXG19_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL6066128.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            10027..10935
                     /locus_tag="PXG19_000808"
     CDS             10027..10935
                     /locus_tag="PXG19_000808"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL6066129.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(11011..11997)
                     /locus_tag="PXG19_000809"
     CDS             complement(11011..11997)
                     /locus_tag="PXG19_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL6066130.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(12091..13962)
                     /gene="rpoD"
                     /locus_tag="PXG19_000810"
     CDS             complement(12091..13962)
                     /gene="rpoD"
                     /locus_tag="PXG19_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL6066131.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(14221..15969)
                     /gene="dnaG"
                     /locus_tag="PXG19_000811"
     CDS             complement(14221..15969)
                     /gene="dnaG"
                     /locus_tag="PXG19_000811"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL6066132.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(16123..16338)
                     /gene="rpsU"
                     /locus_tag="PXG19_000812"
     CDS             complement(16123..16338)
                     /gene="rpsU"
                     /locus_tag="PXG19_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL6066133.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(16486..17082)
                     /locus_tag="PXG19_000813"
     CDS             complement(16486..17082)
                     /locus_tag="PXG19_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL6066134.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            17224..18480
                     /locus_tag="PXG19_000814"
     CDS             17224..18480
                     /locus_tag="PXG19_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL6066135.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQSGNI
                     AILLSLFSIAIAFYWLSKKRIKTGIAYLVFAMFGLFASILTGARGGWLAFIPICFFIL
                     FLNLRQLNKKAIFLILLALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSL
                     GARFDMWENALIGIREKPLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAF
                     VKRGVVGFMALMAILIIPFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLA
                     HNSGSLFYFFVLILLYHLVKQNEEII"
     gene            complement(18582..19589)
                     /gene="rfbB"
                     /locus_tag="PXG19_000815"
     CDS             complement(18582..19589)
                     /gene="rfbB"
                     /locus_tag="PXG19_000815"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL6066136.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
BASE COUNT         5614 a         4411 c         3682 g         5987 t
ORIGIN      
        1 acaaatctta attgttgagg atgagttagt aacaaggaat atgctgaaaa gcatttttga
       61 aggagaagga tatcaggtat ttcaagcatc taacggcgag gaaatgcact ctgttctgag
      121 tacaaatgaa atcaatcttg tgctaatgga cattaactta ccgggaaaaa atggattaat
      181 tctcgcccga gaaattcgag agaatatgaa gctaccatta atgtttttaa ccggtcgcga
      241 caatgaaatt gataagatcc tcggtttaga aataggtgcc gatgactata tcactaaacc
      301 gtttaatcct cgagaattga ctatccgagc gagaaattta ttgcaacgaa cgatgataga
      361 taaagaaaac gacgttgtaa aagagcaatc tgaaattgaa agctatcgct ttaacggttg
      421 gatcttagac attaacagtc atagtttaat ctcaccagaa ggtgaggtaa ataaattacc
      481 acgtagtgaa tttagggctt tattacattt ttgccaacat cctggaaaaa ttcaaacacg
      541 tgaagattta ttgaaaaaaa tgaccgggcg ggaactaaaa cctcatgata gaaccgttga
      601 tgttactatt cgccgtattc gtaaacattt tgaagaccac cccaataccc cagaaattat
      661 tgtcaccatt cacggtgaag gctaccgttt ctgtggtaac atcgaacctt aatcaagata
      721 ggagtaattt tatgaaaaaa ttaactattg tcgcattaac ttgcttattt tctacccatc
      781 tattagccgc tcctgtcgga aatacattta ctggcatcgg tgtcggtgta gatgtaacta
      841 caacaaaata caaagttgaa ggagtaaaag gcaaggattc cacaggtccg gcattagttg
      901 tcgattatgg tattgagcaa ggcaataact ttgtaggcgt tgtacaagga aaagcaaaag
      961 taggtagtac aaaagtattt agcgatgtaa aacaaaaaaa taaatatact atagcttatc
     1021 aacaaggtta tcgtgttgga tccgatttat taccttatgt aaaagtagat gccagctcaa
     1081 gcaaaatcgg taatgaaacc tatcgtggct ttggtttcgg tgctggtgca aaatatgcag
     1141 tttcaagcga tgttgaatta ggtgcagaat acactcgcga taatttaaaa cgtagcggca
     1201 caaaattaaa aggtaacgct ttcaccgcga atgcaactta tcgtttctaa tcttagcggt
     1261 aaagttttct gaaaaaataa ccgcttgtaa cacaaaagag cctgaagtga ttcaggctct
     1321 ttgcctttta atataatact cgggctcgaa tcgtgccttc gatcgctttt aaacgttgta
     1381 atgcttcatc aacattgtcg ctctctacat caattacaac ataaccgata gctgcatcgg
     1441 tttgtaaata ttgagcggca atattcacat ttgattccac aaaaatctgg ttaatttgat
     1501 ttaacatacc tgggcgattc tcgtgaatat gtaataaacg tttggtatta gtatgaagcg
     1561 gtaaggatac ttcagggaaa ttcactgccg tcacggttga accgttatct gaatatttca
     1621 caaatttatt ggcaacttcg gtgccgatat ttgcctgagc ttcagaggtt gaaccaccaa
     1681 tatgtggcgt taaaatcacg ttatcaaact tgcacaatgg tgacacgaac gggtcattaa
     1741 ttgatgccgg ttcttccgga aatacgtcaa tcgccgcacc acgcaatgag ccgtcttcaa
     1801 tccgagcggc taatgcgtct aaatcgacca ctgtaccacg agcggcatta attaacaccg
     1861 agccttcttt taattgagca atgcgttctg cactcattag gtttttagtc gagtcgattt
     1921 ccggaacgtg tagtgaaatc atatcgcagg ttgaaagcaa atgctctaat gtcggcactt
     1981 gctgtgcatt accgagtggt agtttgtttt caacatcata gaaataaacc tgcataccaa
     2041 tggcttcggc aagaatacta agctgtgaac cgatatgacc atatcccaca atacctaatt
     2101 tcttgccacg tacttcgttt gcacctgctg ccgatttatt ccacacccca cgatgcactt
     2161 ccgcatttgc agtcgggact ttacgcatta ataaaatcat ctctgccagc actaattctg
     2221 ccaccgagcg ggtatttgag aacggtgcat tgaataccgg aatacctcgt cttttcgccg
     2281 cattcaaatc aacttggttt gtaccgatac agaaacaacc aatcgcaatt aatttcggag
     2341 cttgagccag tacttcttcg gttaaaaaag tacgcgagcg aataccaaca aagtgtgcat
     2401 ctttaattgc atcaattaat tcttgaccgt ctaatgcttt tttatgcact tcaatattgg
     2461 tataaccagc cgctaagagt acatcaattg cgttttgatg tacgccctca agcagaagga
     2521 atttgatctt ggatttatcc aaagaaattt tagccatttt ttgctcctaa gtatttgtat
     2581 ttgcaataat aaattattct aaaataactg caccttcagg tgtgccgaca atggttacat
     2641 tggcaaaacg ttgtgcaaaa ataccgttag tcaccacgcc tgcaatatta ttaatggtat
     2701 gttccatttt caacggctcc ataattttaa agttatgtac atctaaaatc acattgccgt
     2761 tatcagtgac cacgccctca cggtattccg gcgaaccacc taaggctacg agctgacgag
     2821 ccacataaga acgagccatt gggatcacct ccaccggcag agggaaagtt gaacccagca
     2881 catcaacttg tttggattta tccacaatgc agataaattt tttcgctaat gaactcacga
     2941 ttttctcacg ggtaagtgct gccccgccac ctttaatcat cgccccttgt ggcgtgattt
     3001 catcagctcc gtcaatatac acatctaatt ccgtcacttc attggcactg aatacttcaa
     3061 tgccgatatc acgcaaacgc tgttccgagg ctttagaggc agcaaccgct cctttaatct
     3121 catctttcat tgaagcaagg gcatcaataa aacagtttac ggttgaacca cttcccaccc
     3181 caacaatagt gtccggtttt acaaatttta atgcagcttg tgccgcaatt tttttcattt
     3241 cttgttgatc catttttacc tccacttgta gggcaaatca tcatttgccc acttcggcaa
     3301 ggcgaaaaaa attttcgccc tactacatct attctacaca tatatgtaac aagcggtcat
     3361 atttggcaaa ttttttacca aaaacgaccg cttgtcatta gttacgtttt actgcttcaa
     3421 caatctcttc cgcacagctt tgagcaagta cagcatcttc gcactccacc atcactcgaa
     3481 ttaatggctc agtgcctgat ttacgcaata aaatacgccc tttgcctgcc aagcgttttt
     3541 ccacatctgc cgctaccgct ttcacttcgt tactttcaag cggatttgcc gcccctttct
     3601 caaagcgaac atttagcaga acttgcggga acagaggcac tgcttttgcc aaatcattca
     3661 ggcttaattt gtggcttgcc attgctgcta atacttgcag tgaggcaata ataccatcac
     3721 cggtggtgtt tttatctaac acgataatat gcccggagtt ttcgccaccc agtttccagc
     3781 ctttttcttt aagctgctct agtacatagc ggtcacccac gttagcacga gagaatggaa
     3841 tggctagctc ttttaaagct aattccaagc tcatattact cattaatgta ccgactacac
     3901 cgccttgtaa tttgcctgaa cgtagagctt ctcgggctaa aataaataga atttggtcgc
     3961 catcaacttt attgcctaag tgatcgacca taatcaaacg gtcgccatca ccatcgtaag
     4021 ctagaccaac atccgcacct gcttctacca ccactttttg aagtgcttta atatccgttg
     4081 caccacattt ttcgttgatg tttaaaccgt ccggcttagt accgatttca agcacttctg
     4141 cccctagctc acgcattaca ttcggcgcga tatggtaggt tgcaccgttg gcacaatcca
     4201 ccacaatttt atagccttca aggcttagtt cagacgggaa agtgccttta caaaactcga
     4261 tataacgtcc tgcggcatca ttaatacgac tggcacgacc taaatttgct gaatctacgc
     4321 aatccatagg cttatcaagc attgcttcaa tcgcttcttc aatttcatca ggtagttttt
     4381 caccaaccga cgagaagaat ttaatgccgt tatcgtaata aggattgtga gaggcagaaa
     4441 tcacaatgcc ggcttccgca cggaaagtac gggttaaata agcaattgcc ggagtcggca
     4501 tcggaccaac gaatactgct gataaaccgg ctgcggttaa accggcttcc agagccgatt
     4561 ccaacatata accggaaata cgggtatctt taccgattaa tacttttttc gtgccttggg
     4621 ttgccaacac tttacctgct gcccaaccga gttttaatgc aaattcaggt gtaattggaa
     4681 atttacctac ttcaccacgc acaccgtctg tgccgaaata tttacgagcc attctaattc
     4741 ctaagattga taaaaattta ctttaaaaaa tattgatatg ccggactttc gctcacattt
     4801 tggaagcggt aacctagctg ttctaaatgt cggtttaatt ctacttcatc gcctctgttt
     4861 aatgcaaatg cggcaagaat atcgccataa tcggctccgt gagctcggta atggaataac
     4921 gagatatccc agttagtcag catttgtaag aattttagca atgccccttt ctgctctgga
     4981 aattcaaagc tatagagttg ctcatattga atggagcttg ctctaccgcc taccatataa
     5041 cgaatatggg ttttggcaat atcatcgtcc gataaatctg ccacatcata gccgttttgt
     5101 tgcagatctt taataatctc tactttttct gccgagcctg aaattcgcac ccccacaaaa
     5161 atacaggctt gtttatcatc ggaatggcga tagttaaatt ccgttaccgc acggttgcct
     5221 aaaatctcgc agaattttaa gaaactacct ttctgttcag caatggtgac tgccaataaa
     5281 gcttcacgtt tctccccgat ttcacaacgc tctgacacaa aacgtaaggt gtggaaattc
     5341 acattcgccc cggaaagaat gcaagctaag tttttatctt gtaattgatg ctctttcaca
     5401 tattttttca aaccggcaag ggaagttgcc ccggacggct cggaaatcgc acgcacattt
     5461 tcaaaaatca acttcattga ggcacagatt tcatcattat ccaccaacac cacatcatca
     5521 acatattgct gacacaggcg gaaagtttca tcgccaatgc gttttaccgc aataccgtca
     5581 gcaaaaagcc caacccgttc taaatcggtc ggttgccctt gctttaaggc gtgatataag
     5641 caagcagaat ctttagattc gaccccaatc actttaatat tcggcatcac ctgcttaatt
     5701 aaaaccgcaa tgccggcaat taagccgcca ccgcccactg gaataaatac ataatctaaa
     5761 tccggctttt gttgcaccag ttctaagccg attgtgcctt gccctgcaat cactgccggg
     5821 ctgtcaaacg ggtgaatgaa ggtcataccc aattcggtgg aaagctcaat cgctttcgcc
     5881 ttagcttcat caaaattcgc cccataaagc aacacttcac caccatagcc acgtaccgca
     5941 tcaaccttaa ttgccggtgt gttttgcggc attacaatca aggctcttaa acctaaatgt
     6001 ttggcagaaa gtgccacccc ttgtgcgtgg ttgcctgctg aagccgcaat gactccagcc
     6061 tctttttgtg ctttggataa atttgagatc atcgcaaaag cacctcgcaa tttaaagctg
     6121 tgaaccggct gtcggtcttc acgtttgata aaaatagagt tgcctaaccg ctcagacagt
     6181 ttttccattt tctgtaaagg ggtcacttgc gctaagtcat aaatatttga gcttaaaatc
     6241 gagcgtaaat agtcgatagc ggattgggaa tgttgtgttt cgttcatcat tttgaaaggt
     6301 tatttattgt tagattgaga taaagacatt ggtaaatttc caaggaaaat tgaccgcttg
     6361 tttggttatt tagcaatggc tttaacaggg aatatttcct ctcgcccgtt tgcgggagag
     6421 agacagctta aaatttcgtt cagaaatttt aagcagagag aggggaaacc ttggatatcc
     6481 ccctctccct ccgcaaatct tcgatttgct ccaccctctc ccgcaagcgg ggagagggga
     6541 aatcacaaag ttagtgatga ccaccgcaac cacagccacc gtgtccgtga tgatggtgat
     6601 gatcgtggtc gtgaccgccg cagcaaccat cgtgatcgtg atgatgatcg tgcccaccac
     6661 aaccgcaacc gtgttcgtgt ccgccgtgaa cgtgtccgtg tgcgatttct tccgctgtcg
     6721 cttcacgaat gccaaccact tccacagaga aaagtaattc ctgaccggct aacatatggt
     6781 taccgtccac cacaacttca tcgccatcta cttcggtaat taccaccggt agcggaccta
     6841 aatccgtgtc cgcaataaaa cgcataccca cttctaattc atcgacgccc ataaatacat
     6901 ctttcggtac acgttgaacc atattatcgt tgtactcgcc gtaaccttct tccggtttca
     6961 cacgcacttc aaacacatcg cctacagctt tgccttcaag ggctttttct aagccttcta
     7021 ccaagttgtt gtgaccgtgt aaatattcta acggttggtt taccggtgct tcatctacta
     7081 atacgccttc ttgagtacgc acttgatatg caatgcttgg cactaaatct tttgtaatgt
     7141 tcatattgaa tcctttaatt catcggtttt ataaaatagc aagccattgt aacgctttat
     7201 tttatatttg caatctatct ggaaatttta accgcttgtc agtaaattag tcgataatat
     7261 caggggttac ggtgtctacc acatcaactg cggttcccac cactccacca accaccgaag
     7321 ttaccaaaca accacttagg aaaatagttg ctgaaatcag cccacatact ttgattaatt
     7381 ttttcatttt aaaatccttt caaaaacaaa aaacagccct aatcaagact agagctgcat
     7441 catatttatt cgcttaaatt atttttcttc agcgataaag cgataaacta ccgcaccgat
     7501 aattgcaccg acaatcggag caacccagaa caaccataat tgctcaatcg cccagctgcc
     7561 ttggaataac gctacaccgg ttgaacgtgc cgggtttact gaggtattgg ttaccggaat
     7621 gctgattaag tggattaagg ttaaagccaa accaatagca atcggagcga aacctgctgg
     7681 agcacgttta tcggttgcac ccataatgat gattaagaag aatgccgtta ataccacttc
     7741 aattaataat gctgctgtta agctatagcc gtgtggcgaa tgctcaccat aaccgttgcc
     7801 ggcaaagcct gctgtagcat caaaagtcgg aacacctgaa gcaatggtgt ataacactgc
     7861 accggcagca atcgcaccga ttacttgggc aatgatataa ggcactaaat ctttagcgtt
     7921 aaaacgaccg ccgactaata aaccgattga aaccgccggg ttgaagtgac cacctgaaat
     7981 atgaccgact gcatacgcca ttgttaatac ggttaaaccg aaggctaacg aaacgcctgc
     8041 ataaccgatt cctaattcag gaatgcctgc tgctaaaact gcactgccgc aaccaccaaa
     8101 cactaaccaa aatgtcccga aaaactcagc aaaatatttt ttcatttttt atccttaccc
     8161 taaagggtga atcacacata agtgtattaa ctttccgaat gctataaaac atagccaata
     8221 aaatatgagt atactaaaaa aagtaaagac gcatatttct taattgatag tatagaccga
     8281 ttttttcctc caattaaagt aaaaatacaa ctctatacaa atctatacat ttctattcaa
     8341 attccacact tcctgaagcg gtagctgaaa ttgtggtttt acctgcttct aacgggattt
     8401 catccataga tttgctttgt gccattgatg aaactgcata cattgctctg tgttcataat
     8461 atggtctacc accatcattt ggagtttgaa tattgatatt aactagctta tatgttttcg
     8521 cccctaaggc tttttgaatc acatcggctt tatgctgaaa tttgctgata atttccagcg
     8581 tcatttcatc ttcaagggac gccattttct ctggcgatac actaaaatca atgtaacgaa
     8641 tcgccacatc tttacctaaa ttttccaaca ccgctgccat tgcatcaaaa tctttgcttt
     8701 tcaactgaat gctaccagag gtatcccaac catcaatatt ccctttgttg ttataattaa
     8761 cgtgattagt cacaccttca gcttgtactt caatcgatgg atgttttttt gcctcagcca
     8821 atacacgatt caggttttca gatacaaatt ttttcagctc cggcaaggag ttacctgatt
     8881 tttggctata cacacttgcc tgcatcacgt ccttttccac cgtgcgagag acttcggttg
     8941 agaaattaaa agaagccggt ttatctttat gttccacggt atgagtttcc gctgaagtta
     9001 ccgctgttgc gactgcaagc ggtagaatgg taagaaaatt tttcaatttc ataatcagtc
     9061 cttaaaaggg ttaaaaatca tttcttagat ctcacttgcg taggaaagtt cattcaatcg
     9121 aaagcacaat cgcctgtgta tcattttcaa tttgccagcg aatattgtag ccggcaaggt
     9181 tcataccata aactcgctca ctaggtttcc cttgttgata cgccgggcga gggtcttggg
     9241 cgatgacatc ggcaagaaaa ctaagcggct gttcgatgcc aaattttgca aaatttcggc
     9301 aaaattcgac agcttgtttt gcctcctcgc taaaacgcac cgctaatctt gcttgtggtt
     9361 tttgctgagc aaaaccggaa accgcttgcg gctcgctatc tgcaaatgca atgtaaggct
     9421 tgatgtcaaa aattggtgtg ccgttaacta aatccacgct gcctaatttc aaataaactt
     9481 cactcccccc cgccactacc gcttctaact tcactttcga taagccaagc ggattcggac
     9541 gatgggtggc acggctggca aagaccccga cccgttcgtt cccgcccaag cgaggcggtc
     9601 tgacggtggc gtgccactct ctttcgggaa tgtgatggaa ttggaaaatc aaccaaatat
     9661 gactaaattt ctccaagcct ctgactgcat cgggggtatt gtaaggcgga attaaacgta
     9721 gaatgccttt cccctccgct accaaattcg gctggcgagg cacggaaaat ttttcatcat
     9781 aggggctttc cacaaaaccg atagggttta attgaatcgg ggttagttga tttgaggtag
     9841 agttcattac gcttttttct gttaaaataa tataaaatat tggacataat gatatgaaat
     9901 tgaggatggt gcaagcgtcc acgcttgtac caattcgttt taccatttaa cacaagagtg
     9961 gacgcttgca ctatcgctta aatccttaac atcattgtaa atgaaattac gctaagatta
    10021 ttctctatga acaaaaattc tctcttttcg atttggttta ccaccgctcg cccgaaaact
    10081 ttaccgctgg cgttagcttc aattattgtg ggttcagcac ttgctcattg ggcagggaaa
    10141 tttgatgttg ttaccacctt actcgcattt atcaccacca ttttgttgca gatcctgtct
    10201 aacttcgcca atgattacgg cgaccacgtc aaaggctctg acaccaaaga acgaatcgga
    10261 ccgctacggg cgattcaaca cggtgttatt ggcggtgaac aacttaagaa agccgtgatt
    10321 atcttaagcc tactctcgtt tgtttccggt gttgccttaa gtgcctatgc ttttgaaaca
    10381 gtgcaggatc tgtttttctt tatcgggctt ggcatcgtct caattattgc cgccattact
    10441 tacaccgtcg gcaaaaaagc ctacggctat ttggggctgg gcgatctatt tgtgctgatt
    10501 ttctttggct ttgtagcggt aatcggcgtg ttctacttgc aggctcatag cctacctata
    10561 atgattctgc tccctgcttt cggttgcgga ttgctgtctg tagcagtgtt aaatatcaat
    10621 aacttgcgtg atattaacca agaccgacaa gctgggaaaa acactctcat tgtacgaatc
    10681 ggtagccaaa acgggcgaaa ataccacgtt gcattgttag tgctagcggt catttcttat
    10741 ctgatttttg caatttctga atttgaacat tggtatagct tcattttttt gctgtctgta
    10801 ccgttactgg caaaacacgc tcgttttgtc tatcagcata aagacccaaa agaactctac
    10861 ccaattctag ggcaaatggc agggctggcg ttgctcacta atctattatt tagtttgggc
    10921 attgtgttag ggtaagttgc aaaattttaa caaaactaaa ccgcttgtaa taaaggatta
    10981 caagcggttg ttttttatct aaatttacaa ttagttatct agttcttcaa agaatccatc
    11041 tttttcgcca cgttgatact ccgaattgag caacttatta ataatgtacc aatccgcttc
    11101 aacctctata tcgccttctg cataagcacc taattcgtat ggcggataaa caaaagcaat
    11161 gccgtgaggg gtaaagtaga attggtcaga aatacggaac tcttttttat cagcaaatcc
    11221 attatagttg ccattttcat ccacacgcac gctactgtaa ttttcccaaa gaatgtcttt
    11281 cagttgaact tgattttttg ggctgattaa atcatttaag ccaatgattg cttttttagc
    11341 taaatctaca ttgatatatt gcgtatagtg cataccgtga gccccaccca tataggtgta
    11401 atgcatcata gtgaatgtag caatattatt gcgttgcccg ataaaagcac tggaaatatg
    11461 atcatcatag ccaatagctg gctcggtttt cacactttct accaaccctt gataaaccgc
    11521 ttcacgatgc tttttaaact cttcttcggt tggatttttc agctttctgc cttgttcttc
    11581 attgtaatca taggcctgat taatcaaaag ctggttaagc caatcaaaat tggtttttgg
    11641 tagagacaca aacgcactta ctgtactttc ttctattgca aattcttgtt tcggatcaac
    11701 ttggtgctta atcacctctt tcttatcaaa gattttcaca atttcaacat ttaacgctgt
    11761 gttttgctga gcgttctcta actctgattt taatttttca ttttctgctt tcacccctga
    11821 aagttctgca acttcagcct ctttttttgc taaatcagcc tgagcatttt ttaattctgt
    11881 gcctaactga acaatttgtt tttcggcttc taataccgtt tgggtcattt tgccgtcttc
    11941 acaagctgaa atcagaaata ctgagccaat taaaagtgct aatagtgatt ttttcatctc
    12001 tccctctttt gtaaaaaata cggtaaatat caccgcttgt tatacagatt aaaacaaaat
    12061 cccctatacc atcaggcata ggggaaatga ttagtcgtct aagaaactgc gtaaggtttc
    12121 cgaacggctc gggtggcgaa gtttgcgcag tgctttcgcc tcaatttggc ggatacgttc
    12181 acgagttacg tcaaattgtt taccaacttc ttcgagtgtg tggtctgtgt tcatatcaat
    12241 accaaaacgc atacgcaaca ctttcgcttc acgcggggtt aagccctcta acacttcgtt
    12301 cgttgccata cgcaggctct ccgcagtggc ggaatccaat ggtaattcaa ggctttcgtc
    12361 ttgaatgaaa tcacctaaat gtgaatcgtc atcgtcaccg attggtgttt ccattgaaat
    12421 cggctctttg gcaattttca atactttgcg gattttatct tccggcattc ccatacgttc
    12481 tgccagttct tccggcgttg cctcacgccc catttcttgt aaacattggc gtgaaatacg
    12541 gttgagtttg ttgatagttt caatcatatg caccggaata cgaattgtac gggcttggtc
    12601 agcaatcgaa cgggtaatcg cttgacgaat ccaccaagtt gcataagtcg agaatttata
    12661 accacggcgg tattcaaatt tatccaccgc tttcattaaa ccgatgtttc cttcttggat
    12721 taaatctaag aactgcaagc cacggttagt gtattttttc gcaatcgaaa tcaccaaacg
    12781 taagttagct tccaccatct cttttttcgc acggcgggct tttaactcac cattggaaat
    12841 acgcccgcca atttcacgaa tttgagcaat ggttaagcct gatgtttgct ctaaattctg
    12901 taagttagca atattgacac ggatattatc cacataatta gctaatttcg gtgctgcatt
    12961 tttcttggca ttaatcgctt tttcaatcca cgcttcgctt aattcgtgcc cttggaatgc
    13021 tttcaagaaa tccgcttttt tcatgccggc atattccact gcatagcgtt gaatttgacg
    13081 ttcttcagtg cgaacctgct tcatcagttt ttgcatagaa gcaaccaata agtcaaattg
    13141 cttcggcacc aaacggaatt cacggaaaat atgagataaa atttcaattt gctctttcga
    13201 ttttttactg gttcgcccgt gtttttgaat gaccaataac actttttcat gttggctgcg
    13261 tagggcttca aatttttcac gggcaagttc cgggtcaatt gagctgtcat cactgctgtc
    13321 tgaactgcta tcaccgtttt catcttcgtt ttcgtcatct acatcaggca catcagaaga
    13381 ttcttcatct tcacctaaag cagcctcaat atcctctaac ggtgcttctt ctaaaatatt
    13441 aggatcgaca aatgctgtca ctaaatcaga aaggcgcatt tcaccggttt cgacttgagc
    13501 atagcaggct aacaggccac ttaaggcttc cggatattcc gcaatcgcac attgaacttc
    13561 gttaatccct tcttcaatgc gtttagcgat atcaatctca ccttcacggg ttaaaagctc
    13621 aactgtcccc atctcacgca tatacatacg cacagggtca gtagttctac ctaactctga
    13681 ttctacggtt gaaagcactt tggtggcttc ttctaccaca tcttcatcgg cgatattttc
    13741 agcgagtagt aaatcatccg catcaggggc agcctctaaa acttggatac ccatatcgtt
    13801 gatcatctga ataatatctt cgatctgctc cgcatccacc aactcttccg gtaagtggtc
    13861 gtgcacttca gaaagcgtta aatatccctg ttcacgccct tgactgatca gaagttctaa
    13921 ttgagattgc tgttctaatt gttgatctgc ttggttttcc atagtctatc cgtttattat
    13981 gcgagcaaaa atagtagtgg attataccac taaatttggt tcgacttcat aaattcacaa
    14041 aaaaattcta tttttctaat ttacacatta ctttgatgct tatgagaaca gagaggtgta
    14101 gcaagagaga taaataactt tctttttaga tagaattaat tattttcttc gttcatcact
    14161 tctgccaaat ctcccctaac ccctctttgc taaagagggg aattattcga gcttaaaatt
    14221 ctactgaaac atcaaaagag catactcttt tttctcatca tcggttaagc ccacggttcg
    14281 gtctttggca attagctctt ctttgcgtaa ttccactaat ttggcgtaga gaaaatcgag
    14341 agtgtcaata aatgttcgtt cgatattttc gggtaactct aaatgatccc aatttgcgag
    14401 ggcttcaaca atcttatatt ggggatcttc ccgataatgt tcaagtagcc cgcccatact
    14461 gatacctgca ttttgctgac aagttgcgac aatatcggtt aataatgtaa agccaggatc
    14521 tttcaaggag gctaaagcac ttacatcggg tacgaatttc acaaaatacg gattttgaat
    14581 caataacgca atcaacagcc gcattggcgt acgtttcatt ttgaccgctt gatgtaaagg
    14641 cttctctgcc gcttttttcg tcggtaacag agcttctatc tgcgttgggt ctaaaatgcc
    14701 taatttctgt cctaaaatat tgcgtaaata cactcgcagc atctcgcccg gaatacgatt
    14761 aattaacggc acagctaaag cagcgagctt ggattttccc tcttttgaag agagatccac
    14821 atccgccagc aaactgtcaa ataagaaatc gcttaatggc ttggcattct gtgccacgta
    14881 ctgctcaaat ccttctttac cttgagaacg aacaaaggtg tccgggtctt cgccatcggg
    14941 caagaaaata aatttcagtt ggcgaccgtc ttgcaaataa ggcaacgcat tttctaacgc
    15001 ccgccaagct gcatctcgac cggctctatc gccatcataa caacagacaa tttgctcggt
    15061 gcaacgaaac atttgctgaa tttgttcacc ggtagttgcc gtgcctaaag aggcgactgc
    15121 attgtccacg ccgaattggg caagggcgac cacgtccata tagccttcca ccacgaacag
    15181 ataatccggc gtttcattga ctttcagtgc ttgatacaag ccatataact cactgccttt
    15241 atgataaatc accgtttcgg gcgagttcat atatttcgcc ccttgctcat cattcggcaa
    15301 cacccgccca ccaaaggcaa ttacccgtcc acgcttatct cgaatcggta acattacccg
    15361 attgcgaaat ttatcgtaaa ttcgaccgct atcatttttg gttaaaacgc ccgtatcgag
    15421 caatttctga atatcttctt gtgattgccc aaaagtgcgt agggctgcat caaaggcatt
    15481 cggagcaaaa ccaatttcaa agcgttcgat aatctcttca gacaaacctc gttgctgtaa
    15541 atagctttgt ggctcaatct ggtgcgataa attctgctgg tagaacttcg ccaccgcttc
    15601 catcaattca taaagattac gcttagtttt aaaattagct tgaggcttgc cgtcacgttg
    15661 aatcacattc tctctcggta cttccagccc gtgcatagct gccagttctt caatcgcttc
    15721 cggaaattcg agtttgtcat aatccatcaa aaaggtgatg acattgccgt gtacgccaca
    15781 gccgaaacaa tggtaaaact gttttgattg gcttaccgaa aaggaagggg ttttctcgtg
    15841 atgaaaagga cagcaggctt gataatctcg cccagccttt ttgagtttga cccgactgtt
    15901 gatgacctca acaatatcgg tgcgagcgat aagatcatca ataaatgaac gtggaattgt
    15961 gcctttcatt gatttcctcc tgctctttga atgatacaag cggagcaatt ttgcaaattt
    16021 tttgcaaaaa acaaccgctt gaaatagaaa cgttaaaaac accaaaaccg tgagcctaac
    16081 ggaatcacgg tttcgatata gtttgctaac cagcctaact aattagtata aacgtgtgtt
    16141 acgtgcgttc tcacggaaat tacgtttagc gtgacgttta gcaagtgatg ctttttcacg
    16201 tttacgaatt gtagttggtt tttcgtagaa ttcacgagca cgaacttcag ctaagatacc
    16261 cgctttttcg caagagcgtt tgaaacgacg taatgctacg tcaaatgatt cattttcacg
    16321 aactttaatt actggcatat gccatcacct cagaaaaata tgattaaatt aaaccgcaca
    16381 caattttggc ggcatagaac aaaaaaggta gtgcattcta ccttaagcac tcacataagt
    16441 aaagtagtat tgtggcataa aaccgccgta ttatgttgca tttttctaca gttcgaataa
    16501 tttctcggtc gaaaaactta atgccggaaa gaccaccgaa gttgccggtt catcttctgc
    16561 caccggctga ataccgatat atttaccgtt ttccaacaca aaaatctgaa tagtgcgggt
    16621 ttcgggagaa acaatccaat actctttcac cccttgttcc tggtaaagct cgtatttatc
    16681 tttcatctcc cttttggtat tacccggaga aaggatttcc accactaaat ccggtgcccc
    16741 tacacagcct ctttcatcta acttactgac atcacaaatt acacaaagat caggctgcac
    16801 tacagttttg acttttccgt tttcatcggg aaaccgaacg tcaaaaggcg cagaataaat
    16861 ctggcattgg tgattgtcaa aaacctctaa aaattttgct gtcatcttca tagaaattcg
    16921 ctgatgaaaa cgagtaggag ccggagacat cgccacaatt ttccctttga taatctcaac
    16981 ccgctcttta aatttccata gcaaataatc agcgtaactg taactttttt gtaagtccag
    17041 ttgatttaag ctggtaattt cgttcattgg taataagctc ataccgcctc ctttatcaga
    17101 aatataaaga tattatgccg aataatccct caaattcaac aaaactttcg ctaaaaagag
    17161 atagataacc tttataccct tagtataaaa tgacagcaat tttcattgtt ttaggatatg
    17221 tcgatgcacc ttaacttcaa aaaaatagac aactcacata ttgctctttt ctataatgta
    17281 ctagtcgcca cattttttgt cactgtttta acctttaaga aaggttatag ttatgtgcca
    17341 atggcattag gtattatcgc tacacttagt ttcttatttt atcgtttcaa attaaaacaa
    17401 aagtggttac ttgataaaga ggataaattt tttattttct cgcttattgg ctattttcta
    17461 acgtttgcaa tgtctgctat ttttaatggc gatggcattc gtgaaattga taatcctatc
    17521 cagattttat tgcttatccc tttaatcatc ctctttagac tttacccgat taaaaaagaa
    17581 actgtattgc actttatacc gattggagcg ttggtagctg gttgtatagc aatatatcag
    17641 aggtttatat taaatcttaa atttcctttc cctgaaataa tgcgtattca atcggggaac
    17701 atagcaatat tattatcact atttagtata gcaattgcct tttattggct ttcaaaaaaa
    17761 agaattaaaa ctggcattgc ctacctggtt tttgccatgt ttgggttatt tgccagtatt
    17821 ctaacaggag caagaggcgg ctggcttgca ttcattccca tttgcttttt tatcctattt
    17881 ttaaatttaa gacagctaaa taagaaagct attttcctga ttctattagc acttatatct
    17941 tcactctcat tttttatctc caaaccagaa tttggcatac aaaaacgata taatgcagct
    18001 aagaatgata ttatcgtatt tttagaaaaa ggaaatagac attcatctct gggagctcgt
    18061 tttgatatgt gggaaaatgc gcttatcgga atccgtgaaa aaccgctatt aggacacggt
    18121 agcacaggct atgaaacatt caaaaagaaa cagattgaaa caaaacaaat ggcaaaaaca
    18181 acgcttaggt ttaatagctt acacaaccaa tacctagaag cctttgtgaa aagaggtgta
    18241 gttggtttta tggcgctaat ggctatttta attattccat ttgttatttt tgccaaacga
    18301 ttaaaggcaa aaaatagaga ggtaaaatgt atggcgatat taggcattgt acatattatt
    18361 tcgcattcat tctttttcct aagccaatca tttttagccc ataattcagg ctcattattc
    18421 tatttctttg tgttaatttt actctaccat ttagtcaaac agaacgaaga gataatatga
    18481 taaaacaata gaagaaagtt gggaatataa ccgaggtggt aacttcatct tctaccacag
    18541 gataaatgtc gggatatttc ctctttttct gcttcttact actaattccg attagccaaa
    18601 taccattcca ctgttttacg caagccactt tcaaaagttt ctttcggttt ccagtcgagt
    18661 tccttttcga tttttgaagt atcaattgca tagcggaaat cgtggccagg gcgatcttgc
    18721 acataagtaa ttaaatcagc atattgtcct acaacaagcg ggttatttgg caccatttct
    18781 tgcaaaatag aacagataga acgaaccact tcgatattgg ttttttcatt atgcccgcca
    18841 atattgtagg tttctccgat ttgccctttt tgcaacacca aatagagggc acgaatatga
    18901 tcttccacaa acagccaatc tctgacctgc aagccgttgc cgtaaacagg tagggattta
    18961 ccttctaagg catttaaaat cattaacgga ataagttttt cgggatattg gtatgcccca
    19021 taattattgg aacagttggt gatgacagtc ggtaaaccgt aggtgcgatg ccaagcccga
    19081 gccagatgat cgctggcagc tttagatgcc gaataggggc tacttggatt ataaggggtt
    19141 ttctcggtaa ataattcctc gcttttggct aaatcaccat agacctcgtc ggtcgagata
    19201 tgtagaaagc gaaacgccga tttccttggc tcaggtaacg tgtcccaata ggctctcgct
    19261 gcctctaata aagtataagt gccgacaata ttggtttgaa taaaatctgc tgccccagaa
    19321 atagagcgat caacatggct ttccgctgct aagtgcatta ccacatcagg ctgatatttg
    19381 ccaaaaatct cagaaatttg accgcttgca caaatatctg ctttttcaaa atggtagcgt
    19441 tcgtgatgtg cgacactctc caatgaggct aaatttcccg cataggtgag cttatccaca
    19501 ttgataactg tgtgtggagt atgttcaatc agatagcgaa ctaatgcaga tccgataaaa
    19561 ccggctccgc cagtgatgag gatgatcata aaggtgaata tgaaatttga ttcacgaaat
    19621 ttcgtttgta tttaatatgg ctttgaatat tcttttcagc gtctttttta tcccaaattt
    19681 gcaattccca agga
//
LOCUS       DANMGB010000031        19476 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.031, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000031 DANMGB010000000
VERSION     DANMGB010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19476
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.031"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2..1531
                     /gene="mepM"
                     /locus_tag="PXG19_000816"
     CDS             2..1531
                     /gene="mepM"
                     /locus_tag="PXG19_000816"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL6066137.1"
                     /translation="MQHVILARDRKRHKKHFKIAVFLLAVFSLFVDIVLALKDQSSIN
                     NTSSQEDIIAIDKQEKYQSINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDE
                     IVDDQTATSYEDELVGQDDEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRI
                     QNQFSYTVARGDKLKDVLEQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELE
                     YMNWLVSEKEERVYERKENGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDR
                     QINQLAVGLQSQIATNKLKKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAI
                     QADNGRYYSRYGETLSGGFARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPI
                     GTPIIAPSDGVVEHVAYQARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIA
                     LSGNTGGSTGPHLHYEFHINGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLK
                     M"
     gene            1541..2224
                     /gene="dsbC"
                     /locus_tag="PXG19_000817"
     CDS             1541..2224
                     /gene="dsbC"
                     /locus_tag="PXG19_000817"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL6066138.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2309..4030
                     /gene="recJ"
                     /locus_tag="PXG19_000818"
     CDS             2309..4030
                     /gene="recJ"
                     /locus_tag="PXG19_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL6066139.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQLK
                     VEYLKYI"
     gene            4158..5006
                     /locus_tag="PXG19_000819"
     CDS             4158..5006
                     /locus_tag="PXG19_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6066140.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            5094..5912
                     /locus_tag="PXG19_000820"
     CDS             5094..5912
                     /locus_tag="PXG19_000820"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL6066141.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            5915..7606
                     /gene="narQ"
                     /locus_tag="PXG19_000821"
     CDS             5915..7606
                     /gene="narQ"
                     /locus_tag="PXG19_000821"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL6066142.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGKHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            7657..8175
                     /locus_tag="PXG19_000822"
     CDS             7657..8175
                     /locus_tag="PXG19_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6066143.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            8218..8817
                     /gene="rdgB"
                     /locus_tag="PXG19_000823"
     CDS             8218..8817
                     /gene="rdgB"
                     /locus_tag="PXG19_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL6066144.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            8814..9134
                     /locus_tag="PXG19_000824"
     CDS             8814..9134
                     /locus_tag="PXG19_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL6066145.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            9138..9590
                     /locus_tag="PXG19_000825"
     CDS             9138..9590
                     /locus_tag="PXG19_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL6066146.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(9631..10212)
                     /gene="lpcA"
                     /locus_tag="PXG19_000826"
     CDS             complement(9631..10212)
                     /gene="lpcA"
                     /locus_tag="PXG19_000826"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL6066147.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            10521..11480
                     /locus_tag="PXG19_000827"
     CDS             10521..11480
                     /locus_tag="PXG19_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL6066148.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            11473..13224
                     /locus_tag="PXG19_000828"
     CDS             11473..13224
                     /locus_tag="PXG19_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066149.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            13227..14192
                     /locus_tag="PXG19_000829"
     CDS             13227..14192
                     /locus_tag="PXG19_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6066150.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            14179..15072
                     /locus_tag="PXG19_000830"
     CDS             14179..15072
                     /locus_tag="PXG19_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6066151.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            15143..16195
                     /locus_tag="PXG19_000831"
     CDS             15143..16195
                     /locus_tag="PXG19_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6066152.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(16204..16434)
                     /locus_tag="PXG19_000832"
     CDS             complement(16204..16434)
                     /locus_tag="PXG19_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL6066153.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            16564..17646
                     /gene="leuB"
                     /locus_tag="PXG19_000833"
     CDS             16564..17646
                     /gene="leuB"
                     /locus_tag="PXG19_000833"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL6066154.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(17733..18128)
                     /gene="msrB"
                     /locus_tag="PXG19_000834"
     CDS             complement(17733..18128)
                     /gene="msrB"
                     /locus_tag="PXG19_000834"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL6066155.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            18353..19357
                     /gene="gap"
                     /locus_tag="PXG19_000835"
     CDS             18353..19357
                     /gene="gap"
                     /locus_tag="PXG19_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL6066156.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         6214 a         3283 c         4171 g         5808 t
ORIGIN      
        1 tttgcaacat gtaattttag cgagagatcg taagcgacat aaaaaacatt ttaagattgc
       61 ggttttctta ttagcggtat ttagtctatt tgttgatatt gttctcgcac taaaagatca
      121 atcctcaatc aataatacat cttcacagga agatattatt gccattgata aacaggaaaa
      181 atatcagagt atcaacacta atttggcgga aaataatact ctccatcagg agcaacattc
      241 cagttttatt aattatgtga ctgatttact gactcagtcg gcattagtaa tcgaacatga
      301 cgacgaaatt gttgatgatc aaacagcgac ttcttatgaa gatgaattag ttgggcaaga
      361 cgatgaagta gaagaaggga ttgaaacggt tgaaaatcaa gttcctgggg aaaaactccc
      421 agaagaagct gaaaaggcat tagaagattt acttgatgtg gctgatcaag cactacgaat
      481 tcaaaaccaa ttcagttata ccgtagctcg aggtgataaa cttaaagatg tattagagca
      541 atcaggctta actgcatccg ttgcgaaaaa tttaattaag caacattcgg cattagcaca
      601 attagaaccg ggtcaacaat tttattgggt attagataat gacggtgaat tagaatatat
      661 gaactggctg gtttccgaaa aagaggaacg ggtttatgag cgaaaagaaa atggtaaatt
      721 ttcttttcaa agatttgaga aaaaagggga atggaagtta gatgttgtaa gaggaactat
      781 tcagaatagt tttgcggtta gcttaaaagc cgttggctta tcagaccgcc aaattaacca
      841 gctagcggtt ggattgcagt cacaaattgc gacgaataaa ttaaaaaaag gggataggtt
      901 tgcaattctg attaagcggg aatatattga cggcaaagta acggatttag gaaatgtgga
      961 aggaatccat gtaattagca gtaaaaaaag ttattatgct attcaagcag ataatggacg
     1021 ctattatagt cgatatggtg aaacattaag tggaggattt gctcgtcatc cattattatt
     1081 tgcagcaaga gtaacttctt ctttcaaccc caaacgcaga caccctatta cagggagaat
     1141 tagtccgcat aaaggggttg actatggcgt gccaataggt actccgatca tcgcaccaag
     1201 tgatggtgtc gtagagcatg tggcatatca agcccgtgga gcaggacgtt atattcggat
     1261 aaaacacgga catattacga ctgtttatat gcacctcagc aaaacgttgg taaaaccagg
     1321 gcagagtgtt aaaaaagggg agcggatagc attatcgggt aatacaggcg gttcaaccgg
     1381 gcctcattta cactatgaat tccatattaa tggtcgaccg gtcaacccga ttacggtaaa
     1441 attgcctggc tcaaattcag gtatgggtaa taaagaacgt caagcattct taaataaagc
     1501 gaagaatgta gaaagtagat taaaaatgta aggattctca atgaaaaaaa atctaatcac
     1561 tttaggatta atgtgtttat caaccatcac gtttgcttca gatgcaaaac taaaaagcca
     1621 gcttgaaaaa attggagcca cagatgttaa aatttcagat tctccattaa caggctttaa
     1681 aatggcgact tcaaatgaag gtgttgtata tatcagccaa gacggtcgtt atgtaattca
     1741 aggtaaagta tttgagctaa aaaatggtaa agcgattgat attactaatc aaggattgtt
     1801 ggcagaattg aattcataca ctaatgaaat gatcgtatat ccagcgaaaa atgagaaaca
     1861 tgtgattacg gtgtttatgg atattacttg ccattattgc catttactac atactaaaat
     1921 caaagaatat aatgatttag gtattaccat tcgctatttg gcattcccgc gtggtggaat
     1981 gaatacccaa acagcaaaac aaatggaagc tatttggaca tcagcagaca aagtaaaagc
     2041 actgaatgat gctgaagatg gtaaattacc aacccaaata aaaacgccgg atattgtgaa
     2101 aaaacattac caattaggga ttaaatttgg tgtgacaggt accccaaata tggtaacttc
     2161 agaaggtgag ttgattggtg gttatgtaga gcctaaagaa ttagcgaaaa tgttaagtga
     2221 gtaattcatt aacttgaata caagcggtct ttttttgtaa aatttttgca aaagaagacc
     2281 gcttgttgtt tcattaaaga agagtattgt ggaaaaaata attaaaaggc gcccattatt
     2341 aacaacggaa atagtctcta caaacccgtt attaaatcga atctatcaaa gtcgaggcat
     2401 aaagaatacg caagaactag agcataattt aaagaatttg catagaccac agcaacttgc
     2461 caatattgag caagccgttg acttgctatt acaagccttt cgtgaaaaaa gccggatcat
     2521 tattgtgggt gattttgatg cagatggtgc aaccagtaca tcgcttgccc ttattgcgtt
     2581 acgccaattg ggtttcgata aggtagatta tttaattccg gatcgttttt ctcaggggta
     2641 cggattgagt gtagcggttg ctgaaatggt attagcaaaa ggggcggatt tagtcttaac
     2701 ggtagataat ggaatttctt cgactgaagg cattgctctg ctaaaaagcc atcagattca
     2761 agttttggtt accgatcatc atttaccgcc agagagccta cccaatgcag atgcactggt
     2821 aaaccccaat ttagcttttt gtgaatttcc gtctaaatct ttagccgggg taggcgtgat
     2881 cttctatgta atgatggcat tgcgttctcg tatgagagaa caacatttat ttgaaaataa
     2941 accagagcca aattttgctg aattactgga tttagtcgct ttaggcacag tggctgatgt
     3001 agtgccgtta gatcaaaata atcggatatt ggtgcatcaa gggttacagc gaatccgttc
     3061 agggcattgc cgtttaggga taaaagcttt agcggaggtg ggcaagcgag atctttctac
     3121 tttgcaagca gcagatttgg gttttgctat cgcaccacgt ttgaatgcag ctggtcggtt
     3181 agaaaatatg tctttagggg ttgagttact aatttgtgaa aatatggaat tagctcgccg
     3241 gcttgcgctt gatcttgatt ctcttaatca aacccgaaaa gagtttgaac aagaaatgaa
     3301 agcagaagca ctgtcgattt gtgcgaattt gccaagtctt gcgcagtctg aacaggcaca
     3361 cggaatagtg ttatatcaag cagattggca ccaaggtgta attgggatct tagcttctcg
     3421 cattaaagat caatttaacc gtcctgtcat tgcttttgca caagaaagtg aggaaagtga
     3481 atatctaaaa ggttctgctc gctcgatcaa cggagtacat atgcgagatt tactggaaca
     3541 tatcgatatg cgacatccag acttgattga aaaatttggt ggacacgcaa tggcggctgg
     3601 tttgactatc catcaatcaa aattagattt atttaaacag atatttgacc aatctattaa
     3661 tgcaattatc gagcctgagc aattacaagg catcatttat accgatggtg agttaaatgc
     3721 actagagttt actttagcca atgccgagat gattaggcaa ggtgggcctt ggggacaaca
     3781 ttttccagaa cctagttttg aaggggagtt tagcattctc caacaaaaat tactcgcagg
     3841 taaacattta aaattaatgt tgcaatcaga gaaagggcaa ctatttgatg caatttggtt
     3901 taatgtggat gtaagggcgt ttcctgactt atcgatcaaa aaggcaagat tagtttatag
     3961 gttggatatt aatgaatttc gaggagagaa atctttgcaa ttaaaagtgg agtatcttaa
     4021 atatatttga aatgttattt tatgtaaatt taatagaatt aattatattt gtattgtaga
     4081 atccgtccga atgcaacttt aataggttgt gaagctattt ttttatacag attactataa
     4141 ggaaacttaa tatgaaaatg gaaaaaaaag cccttttccg tggattttta ttatcgacag
     4201 tggcattagc agtggctgct tgtggtaact taagtaaagt gagtgatgaa ggaacaactg
     4261 aaaacccggt attcccgaaa atctcagaat ctgaatttaa ccacgatggt tcacaatttg
     4321 gttcatggcc aaactgggaa aacgttcgtc aaattgaaaa agggatgaac aaagatcaat
     4381 tatataatct aattggtcgt cctcattttg aagaaggctt atatggtgtt cgtgaatggg
     4441 actatgcatt caattaccgt gaaaatggcg tacataaaat ttgccaattt aaaattttat
     4501 tcgataaaaa tatgaatgca caaagtttct tctggtatcc aaatggatgt aatggaaact
     4561 catcatttgc tttaactggc gatttcttat tcgatttcga taaagcgact ttaactacaa
     4621 aaggtaaaga agttgttgat aatgttgctc aacaattaaa agcatctaaa gcacaacaag
     4681 ttaaagtagc aggctataca gaccgtttag gctctgctgc ttataactta gacttatcac
     4741 agcgtcgttc taatacagtt aaagctcgtt tagtacaaca aggcgttaca gcacaaattg
     4801 aagcggtagg ttatggtaaa gcgaatcaag taaaagcttg tgatggtgaa actggtcaag
     4861 cattaaaaga ttgtttacgc cctaaccgtc gtgttgaaat ttctgcaaat tgtggtgtaa
     4921 tgaaacaaaa tgaaggtggc aatgttgcag gtcctaatgg tccggctcca ctttatcaaa
     4981 ccccagcata tgatggcagt aaataatttc tagttttgac taacttagag tagaatatta
     5041 aggcaaccaa atggttgcct tttcttttat ctatttattt ataggggaat actatgaact
     5101 accaagctat tgcatttgat ttagacggaa cactactttc atcgaacgca acaattttag
     5161 aatccagtaa agaggctatt aaaaaggtaa gagaaaaggg aattaaagtc tactttgtta
     5221 ccggtaggca ccatactgcg gttcgccctt attatgtaga actagggctg gatacgccag
     5281 ttgtgtgttg caatggcact tatgtgtatg attttaaaaa tgaaaaagta ttaagcggta
     5341 atccgttatc agcagaaatt gcttcaaaat tagttaatga tgcacaagct caagggattc
     5401 atactgcggt ttattttgaa gatgcaatga cttatgagtc tttgaatatt cacttcacta
     5461 aattccaaaa atgggttgag tcttgcgcac cagaagttcg tccgaatgtt tatcaggtag
     5521 aaaatttcca acaagaaatt gataaaggtg taaccgtatg gaaagtgctt attagcgatc
     5581 cagatcttgc caaaatgcaa aaatttgttg aaaaattacc gcctgatcaa gtaagcccgg
     5641 aatggtcttg ggttgatagg gttgatatta ccagtgttgg taacagcaaa ggggcaagat
     5701 tagcggaagt attaaaaaca gaaggtattg atttacaaaa ggtgattgcc tttggcgata
     5761 atttcaatga tgtttctatg ctagaaaccg ttggattagg cattgcaatg ggaaattcag
     5821 aaccagatat tcagcaaaaa gcgaagaaaa ctataggttc aaataatgaa gatagtattg
     5881 ctaatgaatt gaaagctcaa tttaatcttt aattatgata aaagcaaaat actctattgc
     5941 taggcggata ggactctatt ttttaattat gatcggattt gcttcgatta tcagtggaat
     6001 ctcacttggt attatgtgga gcaataaatc tgatgcgagc ctgattaatg tttcaggctc
     6061 acttcgtatg caaagttatc gattgttatc agaaatggat tcaaaaaaag cgctgctacc
     6121 tgagcgattg ttggaatatc atcgaacgct acatgctaca gagcttagtt cattaaagca
     6181 aagtgtttta ttgccagata gcgtgataga aagctatcaa caattactta aagattggta
     6241 tgaaatgcaa tcttatgtcg ctcagggaga taaagttaat tatgcttcgc acattgaaga
     6301 ttatgtgcag agagttgatg attttgtttt ccgcttacaa gagttcgctg agttaaaatt
     6361 aaagattgca acaggcgtga ttgcgattgc aatgttactg attattgccc ttgcttatat
     6421 tggcgtttgg tatactcgaa aaaagattat tggaccttta aggcaattgg taaaagcgag
     6481 ttggcaaatt caaaataaag attttgacca cgtaaaatta gcggttaatg aacccaatga
     6541 attagggcta ctttcctcta cttttactga gatgtctaat gaattattaa aattatatac
     6601 ttcattagaa gataaagttc aggataaaac acgtcgttta ttggcggtaa atcgttcttt
     6661 actggtatta tatcaatgct ctcaattatt aactgctaag ccgattaata aagaagtgtt
     6721 aaatcaagta cttaaaacgg tatttgataa tgaacatttg ctagggattg atttacaagt
     6781 atatggggct gaatattgga atgtatcaat agacaataaa ccaagtttag attgggtttc
     6841 tgctgaaatt gcaatagaaa atgaaaaatt gggtatctta agctggaaac cctcactggt
     6901 ttgtcctggt gaacgattga tccaaaatgt gtcggaaatg attggtcgta gcctttatgt
     6961 agtgcagatg caaaagcaac agcaacaatt ggtactcatg gaggagcgtg caattattgc
     7021 tcgtgagtta cacgattcct tagcccaatc tcttacgttt ttcaaaattc aggttagcct
     7081 gcttaagctt gctaaaacag atgaaaagcg taatgaaatt ttaactgtat ttgaaaaagc
     7141 gttaaatgat gcttacagcc aattaaggga gctgttgacg acgtttaggc taacgattca
     7201 agaagcgaat ttacaacaag cgttagaaaa aattttagaa agcttaagac cgaaaacctc
     7261 agcacagatt cgcttaagtt gcaaattacc ttcgcatatg tttaatgctc agcagcaagt
     7321 tcacgtattg caaattgtac gagaagctgt gattaatgct attaagcatt cgcaagccac
     7381 tgaaattaat gtgattgctg aaacaaatga tgatggtaaa cattgtttga ctattcaaga
     7441 taatggcgta gggcttgctg cccatacgca accagaaggg cattatggac tgacgattat
     7501 gcaagaacgg gcggctgaac tcaaagccga attttcgatt gaaaatgtgg aaagtggcgg
     7561 agtaaaagta caggttttat tgccgagtat gattagcaag cggtaataaa atattaattt
     7621 tttgcgtatt attggcaacg aataaaagga taacaaatgc aattccgaaa agcagtagaa
     7681 gcggattttg agacaatatt ggcaatttat aatcaagcaa ttcccactca ccaaattacc
     7741 gccgatttag aactggcaac tacgcaaaat cggcggaagt ggttcgattt tcaccttgaa
     7801 acagcccaat atcctatttg ggtggtcgaa gatgaaaaag gcattgctgg ctggtttagt
     7861 ttttcaccat tttatgaaag accggcattt ttacatactt cggaaatcag tatctattta
     7921 gaccgctatt ccaaaggaaa aggctatggc tcaaaaatta ttgagtttat gcaagctgaa
     7981 atgcttaatc acaatattca tacgttgatg gcgtatgtgt ttgaattaaa tacagtgagc
     8041 caaaatctaa tgagaaaaca cggctttgaa caatggggaa gatttccgaa tattgctaat
     8101 atgggaaaag atgagaaagg tgaggataaa tggcgaacgt tgctgatgat gtcttaccaa
     8161 aaaggtatcg aataacaagc ggtgattttt tagaatattt ttgcaaataa ggacaatatg
     8221 gaaaagacaa aaattgtact tgcaacaagt aatgcagata aagttaaaga aatggcagat
     8281 gtactctcac aatttggttt tgaggtggtg gctcaaagtg aatttgggat tgaatcaccg
     8341 gaagaaaccg gtttgacttt tgttgaaaat gcgctgatta aagcacgatt tgctgctaaa
     8401 atgacaggtt taccggcgat tgccgatgat tcaggtttat cggttatggc acttggtggt
     8461 gaaccggggc tatattctgc acgttatgcc ggagagcagg caaccgatgc cgataatcgc
     8521 caaaaattac tagccaaaat gcaagggcaa gagaatcgtc tggcgaaatt tgtcagttgt
     8581 atcgtgtttt taaaacacga aactgaccca acaccttata ttgcgtcggg tgaatgtttc
     8641 ggtgaaattt tgacggaaga aagaggtgaa aatggtttcg gctacgattc cctgtttttc
     8701 tacccaccga aagcttgcac ttttgccgaa ttagaaacca aagagaaaaa agcgatttca
     8761 caccgtgcaa tcgcactaga gcaattaaaa cagcaattag caggagagaa taaatgatta
     8821 ttacaactac acctacgata gagggtaaac aaattgtaga atacaaaggg ttagtatttg
     8881 gcgaagtagt ttctggggct aattttatcc gtgatttctt agccggtatc accgatatta
     8941 ttggcggacg ttcaggtgct tatgaaagca aattaaacgg tgcaagaaaa gaggcattag
     9001 ctgaattagc taaggaggca caaaaagtgg gggcaaatgc ggtggttggc gtttctatgg
     9061 agtatcaatc aatgggcggc gataaaggaa tgttcatcgt ggtagcgact ggtactgcgg
     9121 ttgtaatacg ttaatttatg cagtttgaac aacactttga agcaaatttc tggcagaaca
     9181 aatcgctact tgaaatgaat gatgctgaat gggaagcatt atgtgacggt tgtggtaagt
     9241 gctgctaccg gaaatatatt cagggaagag ggcggcgtga acggctttac tatacctcgg
     9301 ttgcctgtaa tttattagat gtgaatacag gccgttgtat gaattactcg aaccgtttta
     9361 aaattgagtc ggattgtaca aaattaacta aaaagaactt acctgatttt ggctggttgc
     9421 caaaaacctg tgcttatcgt ttactttatg aaggaaagcc tctttttgat tggcaccctt
     9481 taatctctaa agatcctgat tctgtaaaaa atgccggaat gctgattgct aacggtattc
     9541 acgaaaaaga tgtgattgat tggtttgagt ttgttattga tgaagtatga gaaaaaggcg
     9601 tttggtgcaa acgccttttt gttatagaga ttaggctttt tccatctcaa attcaattaa
     9661 catcatcaaa atatgaatca ctttaatgtg aatttcttgg atgcggtctg cgtaacggaa
     9721 atgaggtact cggatttcca catcggctaa tcctgccatt tgcccgccat ctttgccggt
     9781 cattgcaatc actttcatgc ctttttcttt ggcaactttg atcgcattta acacattttt
     9841 agagttacca gaggttgata gaccaaagag tacatcgcct ttttgcccaa cggcctctag
     9901 ataacgagag aagacatatt cataaccgaa gtcattactt acacagctta aatggctgac
     9961 atcggaaata gcgattgccg ggtatccggg acggttttca cggtaacgac ctgttaattc
    10021 ttcggcaaag tgcatcgcat cacagtgcga accgccatta ccgcaagaaa tcaccttacc
    10081 accttgcttg aaactatttg caatcagcat ggcggcatct tgaattaatt taatattttt
    10141 ttcatcagac ataaatttgt ctaatacatc tgcagcttct tgaagctcag ctttaatttg
    10201 ttctaaatac atcatttgct cctttgtttg caaaacgctt acctttaaac atcggcttta
    10261 ccaatggggg tagcgagtaa aaaattcgtt ttttatgacc gcttgaggca taaaaagtgc
    10321 aataagttta gaagatctat gctgtattgt aaacctaata acttaaataa tctgaatagg
    10381 gttgtaaaca aaagtttcca aaagagaaaa atagcggtat gatcgcctca caatccctct
    10441 cgcattgtta actctagtag ctaatatcag gctttaagcg tattaaacaa tgcacaaatt
    10501 tgctatttat aggagactat atggtcgtaa atccagaatc ttttgaacag ataattggac
    10561 aatctgtaaa gataaaagag gttgttgaac aagcaaaaaa atttgccaac cttgatgcac
    10621 cattattgat tcaaggtgag acgggaacag gaaaagattt atttgccaaa tcttgtcacc
    10681 attttggatc tcgtcgaatg caaaaattta ttgccgtgaa ctgtgccggt ttaccggctg
    10741 aagaagcaga atcggaaatg ttcggacatc gtggcaatgg cgttgagtcc gtcggtttct
    10801 ttgaatatgc tcacggtggt acagtattat tagactctat ttctgagtta tcgctggaaa
    10861 tgcaagccaa attattgcgc tttttaaatg atggctcttt tcgtcgagtg ggcgaagatc
    10921 aagagattca agtcaatgtt agggtgatct gtacttcatt acagcctttg tcattattag
    10981 ttgaaaaagg caaagtaaga gaagatctgt ttcatcgttt aaatgttctc actttaaatt
    11041 taccaccttt gcgagatcga aaagaggata ttccattatt agctgattac tttatcgccc
    11101 aaattagcaa tcagttgggg gtgagcaaat tagagtatga taatgttttt ttgcaagcat
    11161 tgcagaatta tcactggcga ggcaacttaa gagagcttta taacgcactt tatcgagctt
    11221 gtacactttc gcatagctac cgtttagcgg taaaagatct tcatttaccc agagatatgg
    11281 aggcgatgat tgaagtacgt gaggaggcga cacttgagga aatgatgagc cagtatgaag
    11341 cccaattatt gcaccaattt tatgcagaat atccgagtac ccgaaaatta gcacaacggc
    11401 tcggactttc acatactgcg gtggcaaaca aattgcgtca atatgggtta acaaaaaatg
    11461 gaaacagtaa agatgaataa actagcggtc attttttcag tatgttttgc aaatttaggg
    11521 ctaaattcga ccgcttacgc agcgccaagt attcctcaag agctacttga aaatagcctt
    11581 gtgtattgca ctacttcatc gggattctct tttaacccac aaaaatccga tgtgagttcg
    11641 aatatgaatg tggtaacaga gcagatctac gataaattag ttgagtttaa tccgaaaaaa
    11701 aatcgactag agcctgcttt agctgaaagt tattcaatca gcgacgatgg tttagtgatt
    11761 acattacgtt taagaaaaaa tgtcgctttt catacaactc catggtttac tccgagtcgt
    11821 aaattaaacg cagaagatgt ggtgttttcg ctaaaacgaa tgattggtaa agaaagtgat
    11881 ttacctgaag tgaaaagtga gcctgaaagt gtattacacc accagcgaca aagctatatt
    11941 taccaaaaaa cagcggggca gatttatttt ccttattttg aaagtgttga tttagcgaat
    12001 aaaattgcca gcattcattc tccgtcaaat gacattgtaa aaattgaatt agtccgtcct
    12061 gattcagcat tgttggcgca tttagccagc caatatgcag ttattctgtc taaagaatat
    12121 gctttacagc tcaatgcaga tgataactta gttcaactgg atttattacc ggtaggaaca
    12181 ggcgtatatc aacttgaaag ttatgaaaat aatgattatg tgcgtttaaa accaaatatg
    12241 aattactggg gcaaaaaagc atatattcaa aatatggtcg tagatttttc cacagaagcg
    12301 accggcagga tggcaaaatt tttaaataat gaatgtgatg tggttgcttt tccggaacct
    12361 agccaattat cagtgttaaa taatcggcag cttattagta gtaaaggtgc taatttggtt
    12421 tatttagcat tcaatatgca acggggtatt gggcaggatt tggcattacg ccaacgtatt
    12481 gcacgcggca taaatcgcaa acgtattgca gagaaattat tttatggtac aggtgaagta
    12541 gcggataacc tattaccaac agctttgtgg tcgaaaaaaa ataatggaag ctacccttat
    12601 caaccacacc aaaattcagg tgagcaagcg gttgaaatgc atgacagtat tataaatcgg
    12661 tctttagata gcaaaacaga gaccgaagaa gtaaaccaaa aacagcgctt aaaactgtgg
    12721 gtaattgatg aaaaacgagt ttataatcaa cacccattaa aaatggcaga aatgatacgt
    12781 gctgatttag ctacgcaaaa tttagaggtc gaaattcgcg cagtaagtcg agcttatttg
    12841 gtgcaacagc ttgctaataa aagtgcggat tatgatttga ttttaggtgg ttggttagca
    12901 aataatcttg atcctaacag ttttttggag gccttactca gttgtaaagc tgcggaaacg
    12961 gtgactaatt tatcaaattg gtgcaatgaa gattttgatt tttggttaca aacagcccgt
    13021 ctaagtgatg atccggcatc agctaattta ttgtatgaat ttgcacaaaa attattagaa
    13081 gagcaattgc ctattctccc tttaatgaat gctaatcgtg tattagtcat aaaagatgga
    13141 gtgaaacagg cagatatttc ccctttcggc caggtaaaat tatcagagtt acgtttgggc
    13201 ttggggcata aaaaaggaaa ctaattatgc tgattgtctt ttttcgaaaa atttttctaa
    13261 ccttgattac gttgattttt ttgtcactta tcagttttaa tattctgtta cgagatccat
    13321 taaaccactt agccgagtta ggctggtttg aggcttattg ttattatgta aaatctctgc
    13381 taaatggtga ttttggtatt agtttcagta atggagaacc gctcacagcg caaattttac
    13441 aggtgttccc ggctacaatt acgctttgtt tatcggctct cattgtttct ttaattattg
    13501 gtttgcctct tggttttttt gcggctactc agcaaaaaaa tatggttggg cgattattaa
    13561 atacactagg ttcattgagt ttagccgtgc cggtattttg gctggcatta gtgctaatgt
    13621 attacgcttc tctcaatcag tgggaagtgt cagcaattgg agaaatccat tcgctttatc
    13681 cgaaacagat ggtaaccggc tttttgctat tagatatttg gttatctgat gtaccttata
    13741 aattaaaaat gatgcagagt gctttacatc acttagcttt gccgacatta gtcttggctg
    13801 tgccagctac attagaagtt atgcatatta ctcaagctag agcaggttat gtaatgaaac
    13861 aaaattacat taaaatagcg aaaacgcgtg gctggacacc gtttagagtt tggagaacgc
    13921 atattatttg taatacttta cctgcattat tacctatgat tgcccgtacc tttattttaa
    13981 tttttgcctt cggtatgtta attgagaaca tatttagctg gggaggaatt ggacgttggc
    14041 tgataaatgc ccttgctatt caagactata atgcgatttc agcgggagta gttgcaatcg
    14101 gggtgtttgt gttattagta gatatggtta caggctttgt gcgggtgatg ttagacccat
    14161 cagataaaaa ggattggtat ggcagttatt aaagaacccg agcaatttag agaaaccaac
    14221 gcatttaagg cattttggtt tcatttccga caagataaac ttgcacttgg cagtttttat
    14281 ctttttttgc tattactggc tctcattttt gttggtagtt tgcttgctcc ttacaattat
    14341 aatgaacaat ttgttggttt agaattaatg cctccctctt gggacgacaa aggtcaaatc
    14401 agccattttt taggcactga cgatttagga cgggatattt taagccgtat tatgtatggt
    14461 ttttactaca cgcttggttc cgcactgatg attaccttat taattgcgat tatcggcggt
    14521 atgatcggga tttatgccgg gctgaaaaaa ggacgttcat tttggttgat tagccatttg
    14581 ttcgatacct ttttatttat gccgatttta ttgattgcga tcatcattgc aaccttaatg
    14641 gaagcgagtt tggtcaatgc aatgttggcg attttcttag cgatgttgcc gcattttatc
    14701 cataaaattt atcaagcaac cgaaaaacaa ctcaaaaaag agtacatcat taccttaaag
    14761 ctagacggtg caagctgctg gtatttaatt cgagaagtga ttattcctaa tcttaccggc
    14821 gtggcaatta aagcactttc acatattttt gtgatcgcca tattagatat tagtgcgtta
    14881 agttttatta tgctgggggc taaaagcccg acccctgaat ggggagcgat gattcgtgaa
    14941 tccatggaac tgatttatat agctccttgg acggtgatat tacctggctt agcaattatt
    15001 tttagtattt ttaccgttac aatacttggt acacgcttaa gcgtgatttt tgaaaaatac
    15061 cgtaaagaat agtatttaaa taggatactg acacataaca agcggtcatt tttaagtaaa
    15121 attttacaga ttaaggaata gtatggcatt acttgatatt cgccatttaa gtattgaaat
    15181 tgatatgcca aaaggcagag taaaaatggt ggataacatc aacctgactg ttgatgaggg
    15241 cgaaatttgt ggcttggtgg gagaatctgg ttcgggaaaa agcctcatag ccaaagtgat
    15301 ttgcggtatg attaaagatg aatggattgt gagtgcagat cgctttcgct ttgacgatat
    15361 tgaattactg aaactttcgc cagcggaacg ccgaaaattg gtaggcgatc atatttcaat
    15421 ggtattccaa gatccgctta ctagccttga cccaagccag caaattggta aacaactgat
    15481 gcaaaccatt caatttagag ggaagtggtg gcaacgattt gggtggaaaa agaaaaaagc
    15541 aatcgagcta ctacaccgtg ttggtattcg tgatcatcaa gatattatga aaagttaccc
    15601 aagcgatatt accgaaggcg aagctcagaa agtgatgatt gcaatggcgg tggcaaatca
    15661 gccccgatta ttggtggcag atgagccgac taatattatg gaatcaacca cgcagttgca
    15721 ggtttatcgc ttgctttcca gtatgaatca gaatttggga acctcaatct tgctggtgag
    15781 taatgacatg cgtagcattc aaaattgggt tgattcttac aatgtgcttt attgtggaca
    15841 aaccgttgaa attgcggata aagagagcat tcttgaatcg tcttaccacc cctatactcg
    15901 agtgttactc aatagttcgc cggacttttc tcagccttta gcctttaaaa gtagcttaaa
    15961 tacgctacga ggctcagtcc cgatgttaca agaaatgccg attggttgtc gtttaggccc
    16021 tcgttgccct tttgcacaaa aaaaatgtat caacaaaccg ccattagtga aagtaaaaca
    16081 gcacgagttt gcctgccatt ttccgattaa ctttagagaa caaaatttgc ttaaaaataa
    16141 aacggaaaat acgccgtttg tggtggctga aatagcggaa aaagaggcgt tttaatgtgg
    16201 ttattattgg ctaagtgtaa cgggtaacat taaagtatct aatacgaaac tcaagggtaa
    16261 atcgatcacc gcaagcaccg cgaatatacc gccttcttgc attacttgga aatcttttat
    16321 tacgccggca taaacacggt aatcctgttc aaccaagctt agtactgtgc cacaagcggt
    16381 gaggttaaac atcaaataga gtagaaaaac gagtttacaa gcggtcaatt tcatcaaaaa
    16441 atctccaaat acgcttttat tttacgctat ttttatcggg ttggcgtaaa attcgtttta
    16501 aaaacagcta ttttcaggca gaatgtagcc gaatcgacat taaatatact aagaggatct
    16561 tatatgcaaa cttacaacat tgcagtgctt gccggtgacg gcattgggcc ggaagtgatg
    16621 gcagaagcta tcaaagtgct tgaagcgact caacaaaaat ttggctttaa actaaatttt
    16681 aatcaatata acattggtgg agcagcgatt gatgctcaag gtaaagcgtt acccgaaaat
    16741 accttaaaag gctgtgaaga ggcagatgcg attttgtttg gctcggtagg tggcccgaaa
    16801 tggacgcatt tactacctga tgagcaacct gaacgaggtt cgctattacc actgcgtaaa
    16861 catttctcgc tattctgtaa tttacgccct gctgcattgt atcaagggct ggaaaaattc
    16921 tgcccattac gtgccgatat tgctgctaaa ggttttgata tggtggtggt gcgtgaatta
    16981 accggcggga tttattttgg acagccgaaa ggccgtgatg gtgaaggtgc gcaaacgaga
    17041 gcgtttgaca ccgaagtata ctacaaatat gaaatcgagc gtattacccg tgtggcgttt
    17101 gaatctgcaa tgaaacgtaa aaaacacgta acctctgtgg ataaagccaa tgtgttacaa
    17161 agctcgattt tatggcgtga aaccgtcacg gaagtagcta aagagttccc agaagtcacg
    17221 cttgagcata tgtatattga taatgcgaca atgcagctaa tcaaagcacc tgaatcgttc
    17281 gatattttat tatgctcaaa catcttcggc gatattattt ccgatgaggc tgcaatgatt
    17341 acaggttcta tgggcatgtt gccttcagcc agcctcaatg agcaaggttt cggcttatat
    17401 gaaccggcag gcggttcagc accggatatt gccggtaaaa atattgcgaa tccgattgcg
    17461 caaattttat cagccgcaat gatgttgcgt tatagcttta acttaggtga tgctgctgat
    17521 gcgattgaaa cagcgatcca aaaagccctt gctgatggct accgtaccgc tgatttagct
    17581 gatgacagca aaccgctttc tacctcagaa atgggcgata ttattgcgaa aaatattctc
    17641 gcttaaggct agaagttaaa tagcacaagc ggtcattatt cgccaaattt ttgcaaattt
    17701 tccgctaata atgaccgctt gtttattact cgttagccgt caatctcttc gcctgtttct
    17761 tcccacttaa aattcaatgc cgcagagttg aggcaaaaac gcaaccctgt tggtggtggg
    17821 ccgtccggaa aaacgtgtcc catatgcgaa tcacaattcc cacaacgaat ttcgatacga
    17881 tgacgtccta aactgtaatc atctaagtaa cgtagtgacg attctgaaat cgtttggtaa
    17941 aaacttggcc agccacaacc ggcatcaaat ttagtatctg agtgaaataa atcgttatgg
    18001 catctggcac aacgataaat tcctacccga tgttcattca aaaattttcc ggtaaacgga
    18061 cgttccgtac cgtggttgat taaaatatca acttgttgtt ctgtcagggc gtgaataggt
    18121 ttaatcatca gcaattctcc taagatagta gcgaagtcat tgtagctttt tttgacctga
    18181 aaatcgttat aaatttcaaa atttgacata gatcacaaaa aatttatctg ttatattgga
    18241 agggttcttt tggcttgtca ggaaagtgaa aagatgtgct ataattcaag catctttagt
    18301 gtagtacata aagaacaaat tttgtttaac tttaatatag gtagaaaaat ctatggcaat
    18361 taaaattggt attaacggct ttggccgtat cggtcgtatc gttttccgtg cagcacaaca
    18421 ccgtgatgac atcgaagtgg taggtatcaa cgacttaatc gatgttgatt atatggctta
    18481 tatgctgaaa tatgattcaa ctcacggtcg ttttgacggt actgttgaag ttaaagacgg
    18541 tcaattagta gttaacggta aagcgatccg cgtaacagct gagcgtgacc cggctaactt
    18601 aaaatggaat gagatcggtg ttgatatcgc agttgaagca acaggtttat tcttagatga
    18661 tgaaactgct cgcaaacaca tcaccgcagg tgcgaagaaa gttgttttaa ccggtccgtc
    18721 taaagatgca acacctatgt tcgtaaacgg cgtaaacttt gatacttacg caggtcaaga
    18781 catcgtgtct aacgcttctt gtacaactaa ctgtttagca ccattagcga aagttattca
    18841 cgaaaaattc ggtatcaaag aaggtttaat gacaactgtt cacgcaacta ctgcaacgca
    18901 aaaaacagta gatggtccat cagcgaaaga ctggcgtggt ggtcgtggcg cgtcacaaaa
    18961 catcattcct tcatcaacag gtgcagcgaa agcagtaggt aaggtattac ctgcattaaa
    19021 cggtaaatta accggtatgg ctttccgtgt tccaaccact aacgtttctg ttgttgattt
    19081 aactgtaaac ttagaaaaac cagcaactta tgcagaaatc tgtgctgaaa tcaaacgtgc
    19141 ttcagaaaac gaaatgaaag gcgtattagg ctacacagaa gatgcagttg tttcaacaga
    19201 cttcaatggt gcaactgaaa cttcagtatt tgatgcagca gcaggtatcg cattaactga
    19261 tactttcgtt aaattagtat cttggtacga taacgaagtt ggctactcaa acaaagtatt
    19321 agacttagtt gctcacgtat ataactacaa aggttaattg ctaagttata ttttaaatat
    19381 agagccaaat tctgaacgga atttggctct tttgctgcga acaataaatt gaatatagtc
    19441 gcgttttccc ataaaatcaa tttcctacaa acagga
//
LOCUS       DANMGB010000032        19326 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.032, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000032 DANMGB010000000
VERSION     DANMGB010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19326
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.032"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            23..973
                     /gene="tal"
                     /locus_tag="PXG19_000836"
     CDS             23..973
                     /gene="tal"
                     /locus_tag="PXG19_000836"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL6066157.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1035..1308)
                     /locus_tag="PXG19_000837"
                     /pseudo
     CDS             complement(1035..1308)
                     /locus_tag="PXG19_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(1339..1803)
                     /locus_tag="PXG19_000838"
     CDS             complement(1339..1803)
                     /locus_tag="PXG19_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6066158.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1824..2423)
                     /locus_tag="PXG19_000839"
     CDS             complement(1824..2423)
                     /locus_tag="PXG19_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6066159.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2457..4184
                     /gene="argS"
                     /locus_tag="PXG19_000840"
     CDS             2457..4184
                     /gene="argS"
                     /locus_tag="PXG19_000840"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL6066160.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4374..5540
                     /gene="cgtA"
                     /locus_tag="PXG19_000841"
     CDS             4374..5540
                     /gene="cgtA"
                     /locus_tag="PXG19_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL6066161.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            5625..6242
                     /locus_tag="PXG19_000842"
     CDS             5625..6242
                     /locus_tag="PXG19_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL6066162.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6289..8247)
                     /locus_tag="PXG19_000843"
     CDS             complement(6289..8247)
                     /locus_tag="PXG19_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL6066163.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8244..8801)
                     /gene="ccmE"
                     /locus_tag="PXG19_000844"
     CDS             complement(8244..8801)
                     /gene="ccmE"
                     /locus_tag="PXG19_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL6066164.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(8987..9184)
                     /gene="ccmD"
                     /locus_tag="PXG19_000845"
     CDS             complement(8987..9184)
                     /gene="ccmD"
                     /locus_tag="PXG19_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL6066165.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9199..9936)
                     /locus_tag="PXG19_000846"
     CDS             complement(9199..9936)
                     /locus_tag="PXG19_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL6066166.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10136..10798)
                     /gene="ccmB"
                     /locus_tag="PXG19_000847"
     CDS             complement(10136..10798)
                     /gene="ccmB"
                     /locus_tag="PXG19_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL6066167.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10795..11436)
                     /gene="ccmA"
                     /locus_tag="PXG19_000848"
     CDS             complement(10795..11436)
                     /gene="ccmA"
                     /locus_tag="PXG19_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL6066168.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11580..12290)
                     /gene="hda"
                     /locus_tag="PXG19_000849"
     CDS             complement(11580..12290)
                     /gene="hda"
                     /locus_tag="PXG19_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL6066169.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12560..14161
                     /locus_tag="PXG19_000850"
     CDS             12560..14161
                     /locus_tag="PXG19_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066170.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14433..15437
                     /locus_tag="PXG19_000851"
     CDS             14433..15437
                     /locus_tag="PXG19_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6066171.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15539..16432
                     /locus_tag="PXG19_000852"
     CDS             15539..16432
                     /locus_tag="PXG19_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6066172.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16443..17432
                     /gene="dppD"
                     /locus_tag="PXG19_000853"
     CDS             16443..17432
                     /gene="dppD"
                     /locus_tag="PXG19_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL6066173.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            17560..18549
                     /locus_tag="PXG19_000854"
     CDS             17560..18549
                     /locus_tag="PXG19_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066174.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(18783..>19326)
                     /locus_tag="PXG19_000855"
     CDS             complement(18783..>19326)
                     /locus_tag="PXG19_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL6066175.1"
                     /translation="SSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAFVNAIKNIDNF
                     QRKAALKTWIFAILKNKIIDYLRKKDRIVLESDLADDDEENHFFDNYGHWKEEYYPSS
                     WQEEAVYSKEFWILFEVCLSNLPAKQARVFMMREYLEATSDEICRVVNITSDNLYTLI
                     YRARLQLQQCLSRKLTERNR"
BASE COUNT         5831 a         4233 c         4005 g         5257 t
ORIGIN      
        1 caatcaaaaa aggaatcaga ctatgagcca acttgacacc ttaagcaaaa tgaccgttat
       61 cgttgctgac actggtgata ttgaagcaat caaactttat aagccaaaag atgcaacaac
      121 aaacccgtct ttaattttaa gtgcatcggc attaccgcaa tatgctccat taattgaaga
      181 agcgattaat tacgcaaaag cacaaagtag cgataaagat caacagttag ttgatgctga
      241 agataaatta gcggtaaata ttggtttaga aatcttaaaa cttgtacctg gacgtatttc
      301 tacagaagtt gatgctcgtt tttcttatga tactgaaaaa actatcgcta aagcacgtaa
      361 attaattgga ttatataacg atgcaggcat cagtaatgat cgcattttaa ttaaaattgc
      421 ctctacttgg caaggtataa aggcagcaga acagttagaa aaagaaggca ttaactgtaa
      481 cttaacgtta ttattctctc aagctcaagc tcgtgcgtgt gcagaagcag gggtttactt
      541 aatctctcca ttcgttggtc gtattttaga ctggtacaaa gctcacgaag gtaaagaata
      601 tgctccagct gaagatccag gtgtaatttc agtaaccaat atatacaatt actacaaaca
      661 acacggttat gacactattg taatgggtgc aagtttccgt aatgtaggag agatcattga
      721 gttagctggt tgcgaccgtt taaccatctc accaccgtta ttaaaagagc tacaagagag
      781 cgatgaaaaa ttagtttgca agctagatta caaaggtgaa atcaagcctc gtccagaaaa
      841 aatgacagaa gcagaattct actgggagca taaccaagag ccaatggcag tagaaaaatt
      901 agctgaaggc attcgtaaat ttgcgattga ccaagagaag ttagaagcaa tgcttgctga
      961 aaaacttcaa tagacaacgc ataaaaaaac cggcattaac gataattaat gccggtttta
     1021 atttctataa atgattattt aaactcataa cgtctaatcg tttttagatc gctatcttca
     1081 tttttaattt catcggcaag atgaacacga gcaccaaccg ctgcatgtgc atcatactca
     1141 cgagttagag tcacagtttc accattatct cgttgaactg taagttcaac aacatcgttt
     1201 gatactgctt tgctagataa atgttgcatt acctttatca gaataaacat ctgcagtaca
     1261 agctgctaac ataagtgaag ctaatacagc taaagaaagt tttttcatta ataatatatc
     1321 ctctaggaaa aactaaaatt aaagcagaga aacattcagg tctgaattag accctacgat
     1381 tctcacacgt ttgccaggca caaaaccgtc ttctttcttt tgaacgacca cgatttcttt
     1441 accatcatct ttgcgaataa ccatttccaa tgaagaaact tgactcgctt tttgttctac
     1501 ttgattacca attaccgcac cggcaactgc ccccactgcg gttgcaatcg cttgccctgt
     1561 accaccgcca atcgcattac cggcaacgcc acctaataca ccaccgccga cagtaccgat
     1621 cacaccttca ctgcgtgctt gaattttcac atcacgcact gaaacaatag tgccataagc
     1681 gatagaacga gcttcttttg cctgctcacc ggaataaacg cttccgctaa acacgtctgt
     1741 atttgcacag ccaactaaag caaaacttga cattaatgcg acagctaaag ctaatttttt
     1801 cattttgttt gttctccgaa acgttaattt tctgacataa ttacactttt tatatcataa
     1861 gggtggagct ttagacaata aggattacaa aaagttacat ttctcaagct gatcgcaatg
     1921 cttggatttg gcaatctctc cccttctacc tgaggttggc tgatttttaa tttaatctca
     1981 gaattatcag caagtctaaa gtgcgacaat gcccttgaca cccattgttc cgaactttcg
     2041 ttgtctaaca tcggaaaaac cagctcaata tgttcccagc cttcttctaa ataaacctta
     2101 tttttcggaa aaggcaactc gacaatcttt acaaattgtc cgcaaaattc aaccgcttgt
     2161 attaatgcaa acagccctat cggtctgccg tttacctcgc tctctttaag taaggttgcc
     2221 ccatcaagca aaaggatctt ccactgttct gcggtttcgg tttggttcat tcttaccgca
     2281 agatgatcga tttcatacgc tgctaaatca atgccggcga tttcagcaat ttgtcggatt
     2341 ttctgttcaa attgcgataa atcgccaaaa caagcggtca ttttctcgaa aaattttgca
     2401 ttttctgcta taattttgtc catttttttg taaatagaat ttaaataggt taaacagtga
     2461 atattcaaca aattttatca gataaaatta aacaggcaat ggtagcaagc ggtgcagaca
     2521 gcaatgtcga gcctttagtc cgccaatcgg gcaagccgga atttggcgat taccaagcca
     2581 atggtgcgat gggtgcagcg aaaaaattgg ggatgaatcc gcgtgaattt gcccaaaaaa
     2641 tcttagagaa tgccgatttg aacggtattg ccgataaatt agaaattgcc ggtccgggct
     2701 ttatcaacat tttcttaaac ccagaatggc tggcggagaa cactaacagt tcattgcaag
     2761 cggtcaattt tggcataaaa actgcaaatc cgcagacgat tgtgatcgac tactcctcgc
     2821 caaacgtagc aaaagaaatg cacgtcgggc atttgcgttc caccattatt ggcgatgcgg
     2881 tagttcgtac ccttgcgttt ttaggcaata atgtgattcg tgccaaccac gttggcgact
     2941 ggggtactca attcggtatg ctgatcgctt accttgaaaa aatggaaaat gagcacgcca
     3001 gcgaaatgga gctaagcgat ttagaagcct tctatcgtgc ggcaaaagag cattatgatt
     3061 cagacgaagc attcgccgaa aaagcccgta actatgtggt gaaattacaa agcggcgata
     3121 aatattgctt aacaatgtgg aaaaaattgg tcgatattac aatgcaccac aatcaagaga
     3181 actacaatcg cttaaatgtt acgctcaccg aaaaagatgt aatgggcgaa agcctctaca
     3241 atccaatgtt gcctgaaatt gtggcggatt taaaagccaa aggcttagcg gtggaagatg
     3301 acggtgcttt agtggttttc ctcgatgaat ttaaaaataa agatggcgac ccaatgggcg
     3361 taatcgtgca gaaaaaagat ggcggtttct tatataccac taccgatatt gcggcagcaa
     3421 aatatcgcta cgagacctta aaagctgacc gagccttagt cttttctgac agccgccaag
     3481 ctcaacatat gcaacaggca tggctcatta cccgcaaagc gggctatgtg ccggacagtt
     3541 tcagccttga acacccgttc ttcggaatga tgctaggcaa agacggcaaa ccgttcaaaa
     3601 cccgtagcgg tggcacagtc aaactcaaag atttattaga tgaagcggta gagcgtgccg
     3661 ataaactgat tgccgaacgt tcaaccgagc taactgcgga agaaaaagcc gccgtggttg
     3721 aagcggttgc gattggttcg gtgaaatatt ctgacttatc gaaaaaccgc accaccgatt
     3781 atgtgttcga ttgggacaat atgctgacct ttgaaggcaa taccgccccg tatatgcagt
     3841 atgcctacac ccgcattcgc tccatctttg cccgtgcgaa cattgacgaa aatgcattga
     3901 gcggttcaat ccaactcaat gagccaaaag agcgtgcatt agcagtgaaa ctattgcaat
     3961 ttgaagaggc attaaacggc gtggcaaaag aaggtatgcc acatatttta tgccaatatt
     4021 tatacgagct tgcaggtagt ttctccagtt tctacgaggc ttgcccgatt ctcaatgccg
     4081 aagaaacaac caaaaacagc cgtttgaaac tcgctgcctt aacggcgaaa accttgaaac
     4141 aagggttgga tttactcggt attaaaactg tagagaagat gtaatacaaa ctctctcccc
     4201 ttgtgggaga gagaccgctt atgagcgttc agcgaaataa gcagagagag gggacaagcg
     4261 gtaattttta ttaaaatttt tacacatttt cccctctccc tgatttttct tctgaacgaa
     4321 gaaaaatctg tccctctccc acaaggggag agggcatata aaaggaaaca aatatgaaat
     4381 ttattgacga agccctgatt cgtgtagaag caggcgatgg cggtaatggc tgtgtgagct
     4441 tccgccgtga aaaatttatc ccgaaaggcg gacctgacgg tggtgatggt ggcgatggtg
     4501 gtgatgtgta tttaattgcc gatgaaaacc taaacaccct tatcgactac cgctttgaaa
     4561 aacgttatgc cgctgggcgt ggcgagaatg gtcgcagtgc cggctgtacc ggacatcgtg
     4621 ggcaagatat taccctacga gtgccggttg gaacccgtgc gattgataac gacacccaag
     4681 aaattattgg cgatttaacc cgccacggaa tgaaaatgct ggtggcaaaa ggtggttatc
     4741 acggtttagg taatacccgc tttaaatcct cagtaaaccg agctccacgc caaaaaacca
     4801 acggtacgcc tggcgaaaaa cgtgatttga aattagagct gttactgctt gccgatgtgg
     4861 gaatgcttgg cttaccaaac gccggtaaat ccacctttat ccgcagtgtc tctgctgcca
     4921 aaccaaaagt ggcggattac ccgttcacga cgctggtgcc aagtttaggg gtagcccgtg
     4981 tgggggccga ccgcagtttt gtggttgccg atattccggg gttaattgaa ggtgcagcag
     5041 atggtgcagg gctggggatt cgtttcctaa aacacttgga acgttgccgt attttgattc
     5101 acttagtcga tattatgccg attgatgaaa gcgatccggc tcataatatt tcggtgattg
     5161 aatccgagct ttaccaatac agcgaaaaac tcgccgaaaa accgatctgg ttggtgttta
     5221 ataaaattga caccatcggc gaagaagaag ctgctgagcg agcaaaagac attgccgagc
     5281 aaatcggctg ggaaggcgat tactacttga tttctgccgc taccggtcaa aacgtgcaag
     5341 ctctcactcg tgatattatg gactttattg aagccaaccc acgcgaagtg gaggaagaaa
     5401 ataaagcacc tgaagaagtc aaattcaaat gggaagacta ccacaacgaa gcaatgcaaa
     5461 atgcggtaga agaagattgg gacgacgatt ggagcgaaga agatgacgaa ggcatagagt
     5521 ttatttacga acgccattag tgcaataata caagcggttg tttttaaacg gagatttgca
     5581 aatttccgga gaaaaacaac cgcttgtagg tttaaggaga gtttatgctt agctcaacat
     5641 cgtgcgattt attcaatatt ccgttcttcc aatttgctca gatgaagaaa tattgccctg
     5701 aggagatccc tcgaattaag gcggaatata aaactcaatg ggaaatttgg aaaaagctac
     5761 atcaggaagt ttctcgtcag cttgggcagc cgtttgctcc accacatatt gagaagtggt
     5821 gcaacggttg gcaagttcga gcccattttt ttgcctatta caagtatgaa tttaatcgaa
     5881 attctgcggc tattctttcc gtgattttaa atcgtcgccg tttgcaagtg agccttgatt
     5941 ggcattgtta tcgagccgat cgctcgcaaa ttaacgtgca tcaatacaat caatggtggg
     6001 aaaatttaga tcgggaaaag tttgctgatt ttgagatttg gcacggaagt gagagtgaat
     6061 atgatgattt tagaaccgtt agtcagatgt cagagcaagc gttcacccta actaacgagg
     6121 aagatttttg gtgtatcggc aaaaatgtgg aaaaggacga tttggataac attgatgtag
     6181 tagaatttat ctaccaaacc attcgggcat tattgccact ttatgagaaa tgtcatcaat
     6241 aaacactaaa aagagaggcg aacatcattt gttcgcccct ttcaaaattt aagctatcac
     6301 ttctttttta ttttcaatgc gtaaacggta gcgtttatcc aacatacaga gtaaaccacc
     6361 gagagccata aacagcccgc caatccaaat ccagcgaatg aacggtttat aatacaaacg
     6421 cactgcccaa gagttatctt ctaatttttc gccaagtgca gcgtataaat ctcgggtaaa
     6481 gccccagtca atcgccgctt cggtcattcc cattcggctc accgtataga aacgtttttc
     6541 agcattaagt gtggcttcat atttaccgtt tcgagtaatt tcaagctcgg cagtgccgcc
     6601 ttgatagttt gccccatcgg tgattttaat acctttaaat tcaaattggt aatctaaaat
     6661 ctcagcttta tcacccacat tcattctgac atctcgttca atgctgaaat tttggctaaa
     6721 tgcaatgccg aacactgtca tcgcaacccc taagtgagcc agcaccattc cccaatgtga
     6781 acgggacagt ttgaaaatgc cacttaagaa cgagtggcga tgggttgcac gttggtgtag
     6841 ctcatacagg ctaagtaaca caataaagac agacatcatc gtgcctaaca ccacactcac
     6901 ggtaatggtg ttacggaata agtatggcaa tccgaatcca agcaatgcca ttaaaatagt
     6961 tgcaataatt accggtttac gaatagcaga aacttggtct ctacgccatt tcactaatgg
     7021 tccaatccct aatacaaatg agaaaggaac cattaaaatt aagaacattt ggtcaaaaaa
     7081 tggtgccccg attgaaatcg tccctaagcc gatttgtttg tgaattaatg gcagtaaggt
     7141 ccctaaaaac accaccgata aaaatgccat taataaaata ttattaatga gtagcatcgt
     7201 ttctcttgaa tagcgttcat agttatctaa gcttttaatt tccgagcctt tgaatgcata
     7261 cagcagtaaa gaaccaccta ctactaacac caagtaagcc aagatgtata aaccacgagt
     7321 tggatctgaa gcaaaggcgt gaactgacac caaaatgcct gaacgcacta agaaagtccc
     7381 cactaaacag agcgagaaag caagaatcgc taataagacc gtccacgctt taaatgtgcc
     7441 tcgtttttca gtcactgcta atgaatgaat cagtgctgtt cctgcgagcc acggcattaa
     7501 tgaggcattc tcgacaggat cccagaacca ccagccaccc caaccaagtt cgtagtatgc
     7561 ccaccaagaa ccaagcacga taccgagcgt taaaaatacc cacgctgcca ttgtccacgg
     7621 acgagaccat cttgcccacg cagtatctaa acgccctgtc atcagtgagg caatcgcaaa
     7681 agcaaaggca acggagaaac ccacatagcc catataaagc aacggtgggt ggaagatcaa
     7741 gcccacatct tgcagcattg ggtttaattc tttgccatca atcggaaaat ttgggaaagt
     7801 tctatcaaac gggttggagg taaaaatcac aaacatcaaa aagccgatgc caatgacccc
     7861 cattagtcct aacactcgag caacggcatc ttccggcatt ttacgggtaa aggttgctac
     7921 cccgacagac caaagcgaca acaaccaaac ccaaagcaat aatgagcctt cgtgagcgcc
     7981 ccacaccgca gataaacgat attgcaacgg taaacggcta ttggagttgt tcaccacata
     8041 ttgcacggta aaatcattca ccgcaaacag ataaaacagc gaaccaaaag agacagtcaa
     8101 tgccaaaaac attgcccaag tcatcgggcg ggcaagagca attaaggtgc tattttgctt
     8161 ttctgctccc caaagcggta aaactgccaa caagatagaa atcgctaggg ctaatgccaa
     8221 cgtataattg cctaattctg caatcatttg ctttcccctt gcacattgtt ggctttttct
     8281 gcttccgcct cggctttcat tttgcggtcg gtttccgatt cacctttcag atcttgttca
     8341 gacacacctg attttttatg ctgttctttt aatttatcgc ctaattccgg tggcatatag
     8401 ttttcatcgt gttttgccag aacttccgta gcttttaaac gggttggttc aatcaacacg
     8461 ccttgtgcca caatgccttg cccttcacgg aataaatccg gcaaaattcc ttcgtattcc
     8521 acggtaatcg aaggcccgat atcattgaga tcaaatacta cttttaaact tttatcatca
     8581 cgctttaccg tatcttccac taccattccg cccacacgga tacgctgacc aacttcaggc
     8641 ttttgtttcg gatcatcatt tttaccgttt acaatttcag acggcgtgta aaacagatcg
     8701 atattttggc ttaacgcata aagtgtcaag cctgctgcga cagaaagccc aagtaatatc
     8761 gaaaccacca cttttaatct tgatttgcgt cttggattca tcgtaatcac ccttcaaaat
     8821 aaatgcaaaa ttgcataaaa actcaaaaat aaattagtgt aagaatagca aaaaaccgca
     8881 aaacattccc gatatttcaa ggaagttttg cgatttctca aatcaaatac ctataaagaa
     8941 gtatgaggct atcgttgcaa aaaataaagt tatttcgacc gcttgtttat tgtgatgttt
     9001 gctttaattt ttcttcacgc acaatctctt tttttgcttg agccaaaatc gctttctgtt
     9061 cacggcgact aagccaaatc agcccaatca ttgcaatgaa actgacacca taagagagcc
     9121 atacataaaa gccgtagcca cccattgcaa aaaaatcgct gattgattca aattgaaatg
     9181 tcattgttct ctcctactct aaactgattt tgccagttgt tttacccaag ggcgattacg
     9241 ttcgtccttt aataaggcaa tgcgataacg ccaaatgcta aaccaagcgg taaaaattaa
     9301 gctaccgaaa atcgccaata gcaacggaat taacatttcc accgccatag acggtttatc
     9361 gaatttagtg atggtcgccc cttgatgcaa ggtgttccac cattccaccg aaaagtgaat
     9421 aatcggcaag ttaatcacgc caacaactga cagcacagcc gccgctttgg ctccggtttg
     9481 tctgtcttgg aatgcggaat aaagagccat cacgccgata taaaggaaaa ataacactaa
     9541 agcggaggtt aaacgagcgt cccacaccca ccaagtcccc cacattggtt tgccccaaat
     9601 tgcaccggtt gcaagtgaaa taaaagcgaa tactaagccg ataggtgcca ttgaaatcat
     9661 cgccaagtta gcttggcgaa tttgccaaac caatgccacc aagcctgcca ccgccattga
     9721 gccatatacg cccatcgacc aaattgctgc cggcacgtga ataaagataa tgcgatagct
     9781 atcgccctgt tggtaatctt tcggggcaaa agccaagccc caaacaaaag cagccgctaa
     9841 cataatcaaa cttagccaac ctaaaaacgg ttggattttc cctagcaaat ggtactgcgt
     9901 ttccgatttt gcataagggt gtagccattt ccacatatat ttctccaaag taaataattc
     9961 ccctcacccg tttacaggag agggacgatt tgagcttcgt tcagaagcga aaatcaggga
    10021 gaggggaaaa agttgcaaat tttcataata attcgaccgc ttcccctctc tctgaaaaac
    10081 acctctgaac gaggtgtttt tcggtctctc tccctcaaga gggagagagg aagttttagt
    10141 tcaaactaat tcttaatgca ccggcaatcg caaacggcga aaaagttaaa gtaaccgcta
    10201 aaattgctcc gataatcgcc agttgtccgc tataacccat atttaaggtg gcggcttcta
    10261 ataccgcagc ggcaaaaatc agtaccggta agaataacgg gaggattaat aaactcagca
    10321 acgtaccgcc cttgcgtaag cccacagtga gtgccacgcc aatcgctcct aagcagctta
    10381 aaatcggggt gccgagtaat aatgtcagca ctaacgccca ccaaacgtgg gtttcaagtg
    10441 aaagcaaaat ggcagcaatc ggtgaaagta aaatcaacgg taagccggtc agcagccagt
    10501 gagcaatcac tttcgctaac gcaacctgcg gcaaggcaag cggcagtaac attaattgct
    10561 cgagcgaacc gtctaaataa tcatcacgga ataaccgctc aaaggaaagc aatgcagaaa
    10621 gcaaagcagc tacccacgca atgccgccgg caattttgcc taataattcg gggttaggtc
    10681 ccattaaaat cgggaatacg gtaatcacca ttaaaaaaaa ccacaacgga tttaaaatct
    10741 ccgagggttt acgaaaggca atggtgagtt cccgctgaat aatagtcaat aaaatcatac
    10801 tttaaattga tctaacgaaa taatacgcac tttgtcgctt tcagcagcct ggtggctggt
    10861 aaaaatcact aatctgcctt gctcgcaatg ctgttcaata tgagcaatca gatccgccac
    10921 acccttttta tcaatagcgg taaagggttc atctaaaatc caaagtttgg cgttagtgag
    10981 ccacaatttt gccaacgcca cacggcgttg ctgaccggct gacaaatgcg aacaaggcaa
    11041 atcttcacgc ccgatgagcg acactttcgt caatgcgtgc caaagggcat catcatcttg
    11101 cggtaactgt tggattttct ggtagaaacg caaattttcc cacggtgtta attccggttt
    11161 tacccccgaa taatgcccta aataaaatag ttcagaataa tagtgatcac gctgtttttg
    11221 aattgcaata tcgttccaca gcacctcacc ttccgcaggt aaaaaaagcc cggctaaaat
    11281 acgtaacagg ctggtttttc caatgccgtt atgcccttca atctgcaccc attcaccact
    11341 ttgcacggta aaactgcacc cttcaaacaa acgggtttcg ccccgttcgc aggcaatctg
    11401 attaagttta agctgatatt gggccgtttg gttcattatt tttcatctgg ttgaacattt
    11461 tagccgaagt gtatcataag cctttgattt aacgtagcaa ataaattact tctttagagg
    11521 tagcaagcgg tcaaattttc aaaaagtttt gcaaattttg ataagaatca aaccgcttgt
    11581 tacagagaga ggatttcctt cacaaaagga atggttaatt tacgctgggc ttggagagac
    11641 gctttatcca acttatccaa tattttagag agttgctcta aatccgttcc cgcttttttt
    11701 aacagaaaat gagcgacctc atcggacaat tccacccctt tttggtgagc atttaactgt
    11761 aaaatttggc atttttgttc atcggttaaa tcgtttagct ggtacacttc gccccaagtt
    11821 aagcgggaac gtaaatccgg caattggata ttgagttggt gtggtgggca atcggcactg
    11881 attaacagca aggttttttg cccttcgtta aacaagcctt gttgttctcg aatttggtta
    11941 aacaggttaa aaatagcaag ttcccattca gcatctcctg caatcgcttg aatatcatct
    12001 aggcaaatca cattcagcag ttcggcatta tctaacacca acggcgagaa ataattggct
    12061 ttagtgagcg gaatataact agaagtttgg ttatttaaaa gaaagtggtt acttactgct
    12121 ttcaacaaat gacttttacc gcagctctta ccgccccaaa tgtaaaaaaa cggctgttga
    12181 acatccgtaa aatttcgttt gagggatcca agcaacactt cgctgttttg gctataaaaa
    12241 ttgtcgaaag tgtcttcatc aatttgatga atgggtagag gtaactgcaa ggctttcctt
    12301 aaatctctaa gtttgatatt tttctaagaa tagcggaaaa gcaggggttt gagaagtaaa
    12361 aatagtgaga aaatatccac tcatttttct aatgaagaga tgacaagcgg ttgaatttcc
    12421 acataatttt gtcaatctga ccgaaaaccc accgttttgt gttaaaaaaa gattgcagtt
    12481 agctcaaaaa attgtatatt caaagctttc tacttaaaaa gtagagtaaa acaactatta
    12541 caaacacaac ggagtgaata tgaaaaacat gactaaatta tcgctaataa cattagcgct
    12601 agccgcttca agtagcgtct ttgctgcacc gaaaaccttt gtttactgct tagaggcttc
    12661 gccttcagca ttaagcccag tgctatcaac agacggtgca agctttgatg tgaacgccct
    12721 cccgatttat aacaaattaa ccgactttga agacggtaca actaatgtta ttccctctct
    12781 tgccgaaaaa tgggacattt cggaagacgg caaaacttac accttccacc tgcgtaaagg
    12841 cgtaaaattc cacgacaata aagaatttaa accaagccgt gagttaaatg cagacgatgt
    12901 agtgttctcc attaaccgtc agtttgatcc aaaccatcca ttccacaaag tttccggcgg
    12961 taactacgaa tactttatcg gtatggatat gcaaaatatt atcgataaag tggaaaaagt
    13021 ggacgatcac accgttaaaa tcagcttaaa agtgccaaat gcgccgttct tagctaactt
    13081 agcgatggat ttcaacgccg tttactcagc ggaatatgca gagcaatcct taaaggccgg
    13141 caagcctgag cgtattgata ccaacccaat cggcagcggc ccgttccagt ttgtggatta
    13201 ccaaaaagat gccaccgttc gttacaaagc ctttgaaaac tactggcaag gcacagcgaa
    13261 aattgaccgc ttagtgtttg caattactcc ggatgcatcg gtacgtttag ccaagttaca
    13321 aaaaggcgag tgccacgcaa tgccttaccc taacccggct gatatcgaag atctgaaaaa
    13381 agatccaaat attgaattaa tgagccaatc tggaatgaat atcggctatt tggcattaaa
    13441 ttcatcgatt aaaccattag ataaccaaaa ggtacgtcaa gcattaaatc acgctgtaaa
    13501 caaacaagcg attgtagatg cggtatatca gggagccggt caagtagcga aaaacccaat
    13561 tccaccaaca atgtggagct ataatgaagc ggttcaagac tatgactaca accctgaaaa
    13621 agccaaagca ttgttaaaag aagccggttt tgaaaatggt tttgatactg aactttgggc
    13681 aatgccggta tcacgtccat ataacccgaa tgctcgccgt atggctgaac ttatccaaga
    13741 agactggaaa aaagtgggcg tgaatgcgaa aatcgtcagc tatgaatggg gcgaatatct
    13801 caaacgctta cgccaaggtg aagcggcaac ctcaatgatt ggctggacag gcgataacgg
    13861 tgacccagat aacttcctca acaccttatt aagctgctca gcggtggaag ccggttcaaa
    13921 ctacgccaaa ttctgccaca aaccgtttga agaagtcgtg cttggtgctg cccaagaaag
    13981 cgacaaagca aaacgtaccg agctttataa acaagctcaa gtgatcttca aagagcaagc
    14041 tccttggatt acgattgctc actccaccgt ttacttcccg gtgcgtaaag aagtaaaagg
    14101 ttatgtgatg agtccgttca gcttacataa cttctacaaa gtagatttag cggataaata
    14161 atccgccaac aagcggtaga atttgcagat ttttttacaa atttgaccgc ttgtcctccc
    14221 ctctttgaac tacgaggggc aggggggaaa tttggcagaa gcgattgccg aagtgagagg
    14281 attgtaaaag aggaaataaa ttttctgtct tattgattat tttcttcgtt aattactact
    14341 gtcaaatctc ccctaccccc tctttgctaa agaggggaat cagatcgaga gatcagacaa
    14401 ctttgatgaa aatccaacct aagagatttt aaatgttttc atttatttta aaacgtgtgc
    14461 taatggtgat ccctaccttt atagcgatta cgttaattac ttttgccctt gtgcatttta
    14521 tccccggtga tccaattgag atccgaatgg gggaacgtgg attatcgcct gaggttcatc
    14581 aacaaatgat ggaacaactc gggctgaacc gaccgttgtt tgaacaatac atcagctaca
    14641 tcaaaggtgt attgcacggt gatcttggta actcatttcg taacaacgaa ccggtgctga
    14701 aggaattttt taccctattc ccagccacgg ttgagttggc attttttgcc ctgctctggt
    14761 cgttgatttt cggcattatt ctcggtgtga ttgctgcggt gaaaaaagaa agttggattt
    14821 cacacactgt aaccacgctt tcactgaccg gctactcaat gccaattttc tggtggggct
    14881 tgattttaat tctttatttc tccaccccgc tcggcttacc ggcttcaggt cgtttaccat
    14941 ctgaatactg gattgaagcc gaaaccggtt ttatgctgat tgatacttgg aattcggacg
    15001 aaccaggggc atttttagcg gcaattaaat ctctgatttt gccgtctatc gtactgggga
    15061 caatccctct tgcagttgtg acccgaatga ctcgctcttc aatgttggaa gtgttgggtg
    15121 aagactatat ccgcaccgcc aaagccaaag gcttaaacac tacccgaatt gtgattgttc
    15181 acgcattaag aaatgccttg attccggtgg taacggtcgt tggcttaatt gtcgggcaac
    15241 tgctttcagg agccgtttta acggaaaaca tcttctcgtg gccgggtatc ggcaaatgga
    15301 ttattgatgc aatcaacagc cgtgattacc ctgtactaca aggctcagtg ctgattattg
    15361 ctactattat tattttagtg aaccttacgg tagatctact ctatggcatt gtcaatccga
    15421 ggattcgaca tagttagaaa aattccttcg atttttcccc tctttagcaa cgagggagtt
    15481 acacaagcgg ttcaaattcc gcaatttttt acaagattat ttttagttgg agttaatgat
    15541 gtcaggaata acggcggtaa atccacccgc acccaaaaca ccgttacagg agttttggta
    15601 ctatttttgt caaaatcggg gggcattaat aggacttacc tttattgcaa tcgtctttgt
    15661 tgcgtgcgta ttcgcacctt gggttgcccc ttttgatcca atcgaacaaa atcgcagtgc
    15721 gttattgctc cctcctgctt ggcttgaagg ggggaattcc gctcatctgc tgggtactga
    15781 cgatattggg cgtgatattc tttcccgtat tatttatggt tcaagattgt ccgtctttat
    15841 cggcttagtc attgtgctac tttcttgcgt attcggcgtg attttaggtc tacttgctgg
    15901 ctactatggt ggcacactcg acatcatcat tatgcgtttt gttgatatta tgctggcgat
    15961 tccaagcctg cttttaacta tcggcgtggt cactatttta ggcccttcat tgataaatgc
    16021 cgctattgcg attgcgattg tctccattcc aagttatgtt cgcttgaccc gtgcttctgt
    16081 attaagcgag aaaaaccgtg attatgttac tgcttctcgt gttgctggtg cgagcgtgct
    16141 tcgcttaatg tttgtggtga ttttacctaa ctgtttagct ccgcttatcg ttcagatgac
    16201 gatggggatc tcaaacgcta ttttagaact tgccgccctc ggcttcttag gcattggtgc
    16261 acagccgcca acaccggagc ttggcacaat gcttgccgaa tctcgtggct ttatgcaatc
    16321 ggcaaactgg ctggtgacca ttccgggtct agcgatttta tcgttagtat tagctttcaa
    16381 cttaatgggt gacggcttgc gtgacgccct cgatccaaaa ctgaaacaat aggagatcta
    16441 aaatggcatt attaacggtt gatcaacttt ccgtccattt tggtgaaact aaaacaccat
    16501 ttaaagcggt ggatcgtatc agttacgaag tcaatgaagg cgaagtatta ggcattgtgg
    16561 gcgaatccgg ttcaggaaaa tcggtaagtt ctctcgctat tatgggctta atcgatttcc
    16621 ccggcagggt tatggctgaa aaattgtatt ttaacggcaa tgatttattg gcattaaaac
    16681 caaaagaaaa acaacagatt gtaggggctg atgtctcaat gatcttccaa gatgcaatga
    16741 ccagcttaaa tccgagctat actgtgggct atcagattat ggaagcccta aaagtgcatc
    16801 aaggtggctc aaaagccagc cgtcgtgagc gagcgattga gttgctgacg atggtcggta
    16861 ttcccgatcc tgaatcccgt ttagaagttt atccgcacca gctttcgggt ggtatgagcc
    16921 agagagtgat gattgcgatg gcgattgcct gtcgcccgaa attattgatt gccgatgagc
    16981 cgactactgc gttagatgtg acgattcaag ctcaaatcat tgatttatta cttgaattac
    17041 aacgcaaaga aaatatggcg ttgattttaa tcacgcacga tttagcgtta gttgccgagt
    17101 ctgcccatcg cattatcgtg atgtatgcag ggcaagtcgt ggaagagggc aaagccgagc
    17161 agatattcaa agcaccactg cacccttaca cccaagcatt gctcaaagcc ttaccggaat
    17221 ttgccgaagg gaaatcccgc ctgcaatcac taccgggcgt agtgccgggc aaatatgacc
    17281 gcccacaagg ttgcttactc aaccctcgct gcccgtatgc aaccgaaaaa tgccgaacca
    17341 ttgaaccggc aatgcagata atcaacggca gacaggtgaa atgccacacg ccactgaatg
    17401 cacagggtga gccgataagg atagctgtat aacgtcataa agagtaggga cgcaatgctt
    17461 cgcgtccgtt acaagcggtg atttttaacc gatttttgca aaataacgat agtggacgca
    17521 aagcattgcg tccctacatt ttccgagaag gaaaacagaa tgaaagaaaa taattctctc
    17581 ccaccattcc tcaaagcagt ggacttaaaa aaatactacc cagttaaaaa gggaatgttc
    17641 gctaaaccga aaacggtaaa agcgctggat ggtgtctctt ttacccttga acgtggcaaa
    17701 acccttgcga ttgttggcga atccggctgt ggaaaatcaa ctttggggcg aatgctcact
    17761 atgattgaaa gcccaaccga aggtgaactg ttctacaacg ggcagaattt cttagtcaat
    17821 gacaaagaaa cggctcaact acgccgtaaa aaaatccaaa ttgtgtttca gaacccgtat
    17881 agctcgctca atccacgcaa aaaagtaggt agcattttag aagaaccatt attgattaac
    17941 accaacttat ccgcaaaaga acgcaaagaa aaagtgttgg aaatgatggc gaaagtcggc
    18001 ttaaaaccgg aattttacga ccgttatccg catatgtttt cgggcggaca acgccagcga
    18061 attgcgattg ctcggggctt aatgttgcag cctgatattg tggttgccga tgaacccgtt
    18121 tccgcattag atgtttcggt tcgggcgcaa gtgttgaatt tgatgatgga tttgcaagaa
    18181 gaaatgggct tgtcttacgt tttcatctcg cacgatttat ccgtagtgga acatattgcc
    18241 gatgaagtga tggtgatgta tttagggcgt tgcgtagaac aaggggatac caaaactatc
    18301 ttcagcaatc cacgtcaccc ttatacacaa gcgttactct ccgcaacccc tcgtttgaac
    18361 ccggagcaac gccgtgagcg gattaaactg actggcgaac taccaagccc gcttaatcca
    18421 ccaaaaggct gtgcctttaa cgcccgttgc agatttgcaa ccgatcgttg ctatgtggag
    18481 cgaccagagc tgaaaaccta tcaagacggt actcgcattg cttgttttgt ggtggaggaa
    18541 aataattagg caacgctcgc tatttaaaag gttaaagttt ttcaacttta acctttattt
    18601 ttcatactta atactcctca tcttttgtag caaaatcttt cattaatttg ctgatatgct
    18661 cacaatggtg tttaaatgac aatacgggca aataatcaaa tgcgttttaa cgccaatctt
    18721 ctcttttaaa gtgagttttc gttcctttga gtcagaaatt aaccttgtta cttgtcggca
    18781 attcatctat ttctctccgt taatttcctt gaaagacatt gttgtaactg cagccttgct
    18841 cgatagatta atgtatataa attatctgat gtaatattta ctactcgaca aatttcatct
    18901 gaggttgcct ctaaatattc cctcatcata aataccctag cttgttttgc aggtaaattg
    18961 cttaagcaaa cttcaaataa tatccaaaat tctttggaat aaacagcttc ttcctgccag
    19021 ctagaaggat aatattcttc tttccaatgc ccataattat caaaaaagtg attctcttcg
    19081 tcatcatcag ctagatcact ttctagtact atacgatctt ttttacgtaa ataatcaata
    19141 attttatttt ttagaatagc aaatatccag gttttcaatg ctgctttacg ctggaaatta
    19201 tcaatatttt ttattgcatt aacgaatgct tcttgaacca tatcttcagc aagagcaata
    19261 tcttgtaatt gtaactgagc aaatttcaac atttgctgac gaatatcggc aagctgttcc
    19321 gatgaa
//
LOCUS       DANMGB010000033        19229 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.033, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000033 DANMGB010000000
VERSION     DANMGB010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19229
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.033"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(64..2976)
                     /gene="rapA"
                     /locus_tag="PXG19_000856"
     CDS             complement(64..2976)
                     /gene="rapA"
                     /locus_tag="PXG19_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL6066176.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            complement(3137..3436)
                     /locus_tag="PXG19_000857"
     CDS             complement(3137..3436)
                     /locus_tag="PXG19_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066177.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            complement(3557..4882)
                     /locus_tag="PXG19_000858"
     CDS             complement(3557..4882)
                     /locus_tag="PXG19_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL6066178.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            4967..6286
                     /gene="rlmD"
                     /locus_tag="PXG19_000859"
     CDS             4967..6286
                     /gene="rlmD"
                     /locus_tag="PXG19_000859"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL6066179.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            complement(6426..7607)
                     /locus_tag="PXG19_000860"
     CDS             complement(6426..7607)
                     /locus_tag="PXG19_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL6066180.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(7597..8298)
                     /gene="rsuA"
                     /locus_tag="PXG19_000861"
     CDS             complement(7597..8298)
                     /gene="rsuA"
                     /locus_tag="PXG19_000861"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL6066181.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            complement(8543..9514)
                     /gene="menC"
                     /locus_tag="PXG19_000862"
     CDS             complement(8543..9514)
                     /gene="menC"
                     /locus_tag="PXG19_000862"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL6066182.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            9726..11804
                     /gene="metG"
                     /locus_tag="PXG19_000863"
     CDS             9726..11804
                     /gene="metG"
                     /locus_tag="PXG19_000863"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL6066183.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            11814..12230
                     /gene="ndk"
                     /locus_tag="PXG19_000864"
     CDS             11814..12230
                     /gene="ndk"
                     /locus_tag="PXG19_000864"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL6066184.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(12286..12762)
                     /gene="greA"
                     /locus_tag="PXG19_000865"
     CDS             complement(12286..12762)
                     /gene="greA"
                     /locus_tag="PXG19_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL6066185.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            12859..14304
                     /gene="dacB"
                     /locus_tag="PXG19_000866"
     CDS             12859..14304
                     /gene="dacB"
                     /locus_tag="PXG19_000866"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL6066186.1"
                     /translation="MIFKNFTRAFLNKFILSTLLIPSITQAEINTEELLNTLPAGTSV
                     SFIAKNLDTNQIITQYQSDIFMLPASTQKVFTALAAKLTLNDDFRFQTALLTNGKVEN
                     GVLKGNLIARFSGDPELTSGQIYQLMSKLKQQGINKIEGDLILDPSVFASHDKASGWI
                     WNDLTMCFNAPPAAINVDHNCFYVTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPK
                     EAPFCQLDVVVHDNNRYQIKGCMARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAF
                     NGQVKEPLTAQNGTLLAEHYSEPLPVLLKKMMKKSDNQIADALFRTVANKQHNRPASF
                     QLGSYVIRQLLKTKANIDFKNSVVADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLF
                     ETFPIAGVDGTISGRGSISTEPLAKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFI
                     NGYSTGELESKTKRAPLNTFENKFYMALFNE"
     gene            complement(14391..14660)
                     /locus_tag="PXG19_000867"
     CDS             complement(14391..14660)
                     /locus_tag="PXG19_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6066187.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            14832..16421
                     /gene="purH"
                     /locus_tag="PXG19_000868"
     CDS             14832..16421
                     /gene="purH"
                     /locus_tag="PXG19_000868"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL6066188.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            complement(16476..17852)
                     /locus_tag="PXG19_000869"
     CDS             complement(16476..17852)
                     /locus_tag="PXG19_000869"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL6066189.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(17909..19135)
                     /locus_tag="PXG19_000870"
     CDS             complement(17909..19135)
                     /locus_tag="PXG19_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL6066190.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
BASE COUNT         5676 a         4392 c         3801 g         5360 t
ORIGIN      
        1 caaaatagaa aagtgatttt ttcgacacag atcgaaaaaa tcacttttcg tacttgcaaa
       61 aaattacgct ttattactta caatcactcg caagctatct aagcgataat ttgccgtttc
      121 aagttgggca agggaagcgt taagctgttg ttctaaggct tcaacttcat cggctcgaat
      181 atttttattc accattttga gtgattccaa gcggtgtaat tctgctttta atttgctatt
      241 tgcctcaaat ttggcagttt caatcacctg ttggacctga ggttctaccg ctttttcact
      301 cgctttaatt aatttttcaa tatccgctcg agccattttg gcaattttat ttgccatctg
      361 tttattcacc ggttttaatt ggcgttcaag cccggcaaaa gagacctgcg gagcaatatt
      421 gttgcctttg ttatccacta aaacccgaat cggggttggc ggtaggaaac gggttaaatt
      481 tagccctttc ggtgcttgtg cttccaccac ataaagcgcc tcaagtaata atgtaccggc
      541 aggcaattta ttattcacca gcaatgagat tgctgatttg ccaatatcgc cggaggtgat
      601 taaatcaata ccattgcgga tcatcgggtg atcccaagtg agaaattcca cctcttcccg
      661 cattaacgcc agttcacgat taaaggtaat ggtcgtgcca tcttccgata gccccgggaa
      721 atcaggcaca agcatatgtc cggttgggct aatcacaatg ctctgctcgc ctaaatcttc
      781 ctgttcaacg ccaatcacat caaacaaact caaggcaaaa ttaaccaact gcggattatt
      841 atcttctttc gcaatatcat tagcgagctg ttgagctgct tctccgccat tagaattcag
      901 ttctaataat ctgtcctgtc ctttctccag ttcggctttc aaatactgtt ggcgtttata
      961 ggttttcgca acaaaatcat caaattgggc tgaaagttca ggtttttgca ggaattgttg
     1021 caattcttca cctaattcac ggaagatcgc tgttcccatc gggcaggttt cttcaaacgc
     1081 attcaagccc ttgtgatacc actctgccaa catctgttga gccgataaat taaagcaagg
     1141 cacataaatc tgaatgtcat ttttctgtcc gatacgatct aatcgcccaa tactttgctc
     1201 caataaatcc gggttatccg gcaaattaaa cagcactaaa tctttagcaa attggaaatt
     1261 tcgcccttct gaaccgatgc ttgaactaat cagcacctga gcgccttctt cttgttgagc
     1321 aaaataggcg gcagctttgt cacgttcaac aatcgacatt ttctcgtgga aaacggcaga
     1381 acgaatcgcc tcacgctcac gcaaaacttg ctccaaagca atcgcagtgt ccgcctgttt
     1441 gcagatcacc agcacttttt catcacgatg attttttaag aaagtgatga gccaatcaat
     1501 ccgagggtcg aattcagccc atttcgcatt cgggttcatt cgttggaaca aatattcagg
     1561 atagagcaaa tcactttggc tcacactccc catcattccc atcactttta acgcattttg
     1621 gtattgtttc ggcatttcta ggctgatttg gtggtattcc cgatgtggga agcctttcac
     1681 tccctgacgg gtatttctaa acaacacccg gctggttcca tggcggtcaa ttagctcact
     1741 aatcagctct tgacgggctt gcaagcggtc attttcgtcc gattttttgc tattaattgc
     1801 acggaacatc ggctcggtat cttgctcgct taacagctcc gcaatcgcat tctgctcgtc
     1861 attacttagc ggtttatcgc ttaataagct actcaccgca tctgccaccg gtttatactg
     1921 tgcttgctcc tgtacaaact cggcataatc ataaaaacga tccgaatcta acaacgccaa
     1981 gcgggcaaaa tggctctctt gccctaattg ctccggtgtt gccgttaaaa gcaagacggc
     2041 aggaatttgt tgagataaac gctctaccaa ctgatagccg atagaagatt cggtttccga
     2101 ccattctaaa tggtgagctt catcaacaat taatagatcc cagtcggcag caagcacttg
     2161 attggctcgt tgcggtgagg tttccagcca gtttagtgaa gtaatgacta acgcttcgct
     2221 ctcaaatgga ttttcactta catcatcgcc attttcatct tgtttatcaa aatcactaca
     2281 acgttcttca tcgaataacg agaatttcag attaaaacgg cgaagcattt ccaccaacca
     2341 ttggtgttgc aaactttccg gcactaatac caatactcgt tctgctctgc ccgaaaatag
     2401 ctgttgttgc aaaatcatac cagcttcaat agttttaccc agtcccactt catcggctaa
     2461 tagcacacga ggagcaaggc gttgcccgac ttcttttgca atatgtaatt gatgtggaat
     2521 caggctggct cgaatgcctc gcaaaccacg cagtggcgac tgatattgcg cttgctggtg
     2581 ctgcaaagcg ttaaagcgta atgcaaagcg atctgagcga tcaatctgag ccgaaaaaag
     2641 gcggtcttgc ggtttgctga aactgatttt atgatcgagc aacatttcag gcagtaccgc
     2701 ttcttcaccg ttatccaccc ttttgcccaa atagattacg gcaccttgat tttccacaac
     2761 ctctgaaacc tctaactgcc agccatctat actgttaatt ctatctccgg cttgaaactg
     2821 cactcgagtt aaaggtgcaa ctgcaattgc atagacccgc tcttcttccg ctgccgggaa
     2881 attgatagtg acagtgcgat gatccaccga agtcacgatt cccaaaccta aattattttc
     2941 cgattcactt agccaacgct gaccgactaa aaacattttt tcctctaagt aataagtaaa
     3001 agcatcatta ttgtcattta aacggctatt ttaccaaatt ccgggaccgg tcggcttgag
     3061 tatttttgca aaaaagcaca ataaaaagac cgcttgtgcg gttaaatcac acaagcggtc
     3121 gttttaaggg gtaaatttag tttttatcta aatctagatc tgccttatat tcaatccgat
     3181 ttctaccttt tacttcaatt tcaatatcca gctcttggtc accacgtttg aattttaaat
     3241 cagcatcatc tctatgaata tcagattcta ctaaatggaa acctttacgt ttagcgtggg
     3301 cgatcgcact tttcgctaag ccacgaacat cattaccact gacacgatat tctacttcaa
     3361 actcaccatt accttgacga tctgctttaa ctaattcgcc acgaggctga taaatttcac
     3421 ttggaagaaa ccgcaaatgc tgttgcagaa gccaaagttg ctaatactaa aagaccttta
     3481 gaaacagttt tcattgaaat ctcctattaa ataaatgaaa cctattactg agaccttgca
     3541 aaattaacaa agttcattat aaactttcaa aaagtttaaa cgcctgccca tcagacatac
     3601 cggctaaata gtcgcaaatt acccttgcac gcttagattc ttccgcattt ttccaacgtt
     3661 cccgcacatt attagggagt aatcgcatcg gatcactgct taaaatatcg aacaattcca
     3721 ttagaatgcg ttgccccttg cgttccaccc gctgggtttt ggcatcacaa atcacatatt
     3781 gatacacaaa atctttcaag attttcagca cacaggcaac actttccggt aaataggcat
     3841 tataacgtag caacggctcg tcaaattcag gcagagcttt ccaacgcaca ttggtaataa
     3901 aatgattcac taatgccccg atcacatctt ttcgctcgta gcggtgctga gaaaagagct
     3961 tttcccgaat ctccggcagg cgttgtttca cccaatcgga ttggcactcc gccagcaatt
     4021 tttccgcatt ttgccacgat tgcggtgtga ccattccacc tacaatcgca tcttccaaat
     4081 cgtgtacgcc ataggcaata tcgtccgcta gttccattat gctgcaatcg agagatttat
     4141 attgcgtttt gtttggctgt ttcggatctt gattgggctg aaccgtgcaa aattggcgtc
     4201 ggtctttttc acttaacggg gctaataccc actcaaaaaa gtggttgttg tcatcaaaaa
     4261 tccctttgct ctgtggaaaa tggtgcaaat taatatgccg agcctcgctc atttctgccg
     4321 gctcaatcgg cgaggtttga gacaagagtg ccggatattt cattaccccc agtaaggtgc
     4381 gacgggtcag attcattccg gctgtttcgg tgtaaggctc aagctgggtc ataatccgaa
     4441 aggattgagc attaccctcg aagccgccaa aggcgtacat tttataattt aacgccattt
     4501 caccaccgtg cccgaacgga gggtgcccga gatcgtgggc aaaacaaagg gattccacca
     4561 agctatgatc cggcaataaa gcggtcagat ttgccatatt ttttgcaaat tcctgctccg
     4621 aacagaccgc ttgaaagcct tccacatccg ctaataattt ttctcgcaaa ctgctaccga
     4681 tttgagccac ttccaacgaa tgggttaaac gggttcgata aaaatcatct tcccccacgg
     4741 cgtgaatttg cgttttcgcc tgcaaacagc gaaaagcctc cgaatgcaat aaccttgccc
     4801 gatcccgctg aaaaggcgag cggtgatctt gttcccgttt tttatccgcc aaataacgtt
     4861 cattccaaac cgatgaaatc atattgcctc cattttccgc caactgcttt tcttatataa
     4921 tctccccatt tcgacacttt atatcataac aattcatctg aaaacaatgg ctatttttta
     4981 ttctgaaaaa tcggcaaaaa aaccgataaa atcacccgct tgtcaaaagg caactattca
     5041 atcgttagat tatcaaggct tagggattgc caaaatcaac ggcaaaactt ggtttatcga
     5101 aaatgccctg cctgatgagc aggtggaatt taaagtgttg gaagagaaac gccaatacgg
     5161 acgtggacaa gcggttaaaa ttcttaaaaa atctgcaaat cggcgaatgc caagctgcga
     5221 actttacggg caatgcggtg gctgccaaat gcagcatatt tcgcttgaac tgcaacgtaa
     5281 ggcaaaacaa caggctttat tccaacgctt acagaaattg caaacccacg ctattgatgt
     5341 tcagccgatg attatcggca acgataaaca ctaccgccgt cgggcaaaat taagcattgc
     5401 gatccagcaa ggcaaggcgg taatcggctt tcgtttgcaa aattccaacc aaattatacc
     5461 gcttgcacac tgtgaagtgc tggttgaacc gcttgccaat ttgctcccaa aattaaaaca
     5521 cctgattgaa aactggcaac agccgaaaaa attggggcat attgagctgg tcagtgcgga
     5581 caataccatt gccctatttt tccgccattt aggggcatta tcggcgcaag ataaccacaa
     5641 tttgcgtcaa ttcgccacac aagagcaatt atctcttttt gtgatgacta gcgaaaatca
     5701 cattgagcat ctgtgcggtg aacgcccgta ttatcaaatt cagggtctaa agttgcattt
     5761 ttcaattcgg gattttattc aggtgaatgc cacgctcaat gaaaaaatgg tggaaaaagc
     5821 ccttgagtgg ctggaattat ccaaccaaga tcgagtgtta gatctcttct gtggaatggg
     5881 gaattttacc ttgcctattg ctgagcgagc gaaatcggtg gtcggtgtgg aaggggtaga
     5941 accaatggtg caacaagccc gagagaatgc ggtgacaagc ggtctaaaaa atgtggaatt
     6001 ttaccaaacc aatttagatg agccgttttc tgacaaacct tgggcaaaag agccgtttaa
     6061 caaggtacta ctcgacccgg cacgcaacgg agcactattt tgcctagatc acttgacatc
     6121 actcaatcct gagcggattg tttatgtctc ttgcaatccg gcaacactgg tgcgagatgc
     6181 cgaaaaactg ttgcaactag gctacaggct agaaaaagcg gcaatgattg atatgttccc
     6241 ccacaccggg catttggaat ctatttcgct gtttttaaaa tcttagtaga tattgccccg
     6301 atggtgcgag cgtccacgct cgtaccacac aagcggttaa ttctgcctaa aaatttgcaa
     6361 aaaatgtact attattaacc gcttgtagaa atttgttggg ttttcgcaag ctaaccccaa
     6421 cctagttatc gcttataaca cagaaaataa tacaccacac cggctaacat aacgcacaat
     6481 gccatcgcca aaagcattgg ggcagcactg gttacagcaa tatgtgaaag ccctgctcca
     6541 acaagggaag caacaccaaa acgagccgta cctgctactc cgttagccgt gcctgccatt
     6601 tgtggaaatt gctctaaaat ggcggcactg gcattactac caatggtgga aagcattccg
     6661 atataaagcg gaataccgat tgccattgcc cagaagccta aatcaaaaat cgccactaaa
     6721 gccagccaaa tgccggctaa cagttgcata gctaaagcaa ttcgtaacat cgtttcagag
     6781 ccgactttca ctaccatttt gctgttaatc gccgtcatcg tcaccatcac aatcatattc
     6841 agcccgaaga aatagccgaa attttcttgc gacacgccat aaagcccaat atagacaatc
     6901 gagcctgagg ttaaaaaaca gaaaatacct gcaaaggtta agccgccaat cagcacataa
     6961 ccaagagtag gcctatgttt cagtaagatg gcaaaattgc ttaaagtttt gccaaaactt
     7021 aacggcaggc gtttttcggg ggctaatgtt tcagggattt tccaactaat taataccacg
     7081 cacaaaatcc ccatcgccac taacacatag aaaattgagt gccagtggaa atatttggca
     7141 atataaccgc caacaatcgg tgcaagcaat ggggcaagca tagaaataat cataataacc
     7201 gacatcaatt tggcaaataa attacgctca aacagatctc tcactaatgc tcccagcacc
     7261 accgccgggg ctgccgcaca taagccctgt actaacctta gcaggtaaaa tgtttcaata
     7321 ttctgaactt gggtcagaaa ataagcggca atcgccgagc cgactaatcc gattaaaata
     7381 atgattttcc gcccaaagct gtctgccatc ggtccccaga atagttgccc tgccccaaaa
     7441 cctagggtaa ataccgccaa ggtggtttgc actttttctt gcgaaaccgc caagtcacgg
     7501 gcaatgtcta aaaatgaggg caaatacata tcaatggcta atggtggcaa cattgccatc
     7561 atacctaata tgatgaaaaa gctcaggctt ggtcttctac tttccattaa aactggctat
     7621 ctcctctgaa gtgagcgagc ggaattcacc ttcttccaac ctttcatcta acaccacatc
     7681 gccaattcgc cagcggtgca atgcctcgac tttattccca agggcggcaa acattcgctt
     7741 aacttgatga taacgcccct cactaatagt taaattcaca ttgtaatcgt ctaaaatttc
     7801 aagttgagcc ggcaaggttg gctctttctc gccacgcaat aaaattcctt ctgccaatcg
     7861 ctgtgcataa aaatcttcca ccggatcagc aagcgtcact aagtatgtct tttcacaatg
     7921 gtgcttgggc gaggtaatac ggtgcgacca tttgccgtca tcggttaaca gcaccagccc
     7981 tgtggtatcc acatctaacc gccctgcggt atgcaattta gtcattaacg gataatcaaa
     8041 gaattgaaac accgttgggt actcaccatc atcgtgtgaa caaatatagc cctgtggctt
     8101 atagagcata aaatactgcc cctcttccac ccactctaat ttctgatctt cgtaataaat
     8161 ttcatcttct tgactgattt ttgccgcacc acttttttca atattgccgt ttaccgtcac
     8221 cacaccactt ttcagcactt tagccgcttg tgaacgggtc aaaccggtat tttcggcgat
     8281 aaatttgtct aaacgcatac tatttttata ccataaatta ctttaccctc tcccctcgtg
     8341 ggagagggac agatttttct tcgtctagaa gaaaaatcag ggagaggggg gaaatacgtc
     8401 ttcgtccaga agaaaaatca gggagagggg aaatgtgcaa acttttttag aaaaatgacc
     8461 gcttcccctc tctctgctta tttcgctgaa cgctcataag cggtctctct cccacaaggg
     8521 gagagagtgt ttaattggga gattatacca caacttccct aacaaattcg ctttctagcc
     8581 cgaccaacgg caagctagag tcgtgccaat ctcgcaataa ttggtgttgc attaaattta
     8641 acgtatccaa ccccggcaca ctgtttgggg tgtattgttg ggcgatacga gccagttggg
     8701 ttaagcccaa actgctctca agacttgaac taatcaccgc tactaatcct tgcttctgtg
     8761 cttgttgaat taaattcacg catttttcaa gcgaaccaac cagcgtaggt ttaatgataa
     8821 tagcggtcaa atttggctct ttttttacca aaaaattcgc ctctctcacg gtttcgtccc
     8881 acgcaatcgc aatgtcggtt tgtgtggcaa attggcggga aagttcgagc gcttggcaag
     8941 gttcttcgat aaattgaata cggggtttat gttcatttgc aattttttca gcaaatttga
     9001 ccgcttgttc caagctccaa agacggttgg catcaagcct taggcgtaaa ttcggaaaag
     9061 tatgcaacag caaatttgcc tgctcgcctt cctgttcagg attgagaccg attttaattt
     9121 taccgattgg gttcgtatgt tggctaaatg ccgtgtgtaa cttttccaaa tcgccatagc
     9181 acagcaccgc cgattggtta ttcgcttgct cgcctaattc attattcagt tcagccaacg
     9241 cacagcttag cccaaaggca acagacggga aaagctgctc taacgtttca ggctctcctt
     9301 tctgccacgc ctttaaccaa ttcacagctt ggttttcagc ttgttctagg ctctcttggc
     9361 taaaacttgg aagcggtgca atttcgcccc agccgacttt ctcctgttct tgcaaacaca
     9421 ccaacacccc ttgcctttct ttcaaaggtt gcttgcgtaa cactacaccg gtttgaatgg
     9481 ggagttggta gcggtataac tttacttgtc gcatactatt tttatccaaa ataggtttag
     9541 aggcgaaaca tctttcgccc acatcatcat ttgggaaatt gaggcgaaaa atgtttcgcc
     9601 tctagcgcat catattctac cgcttgttag cccaaagctc taataaattc acgccaactg
     9661 gtaaacctgc cacttttggg ctaaaataga cggcaatttt taccctaatt ttaatgagaa
     9721 aaagaatggc taaccaaaaa cgaaaaatgc ttgttacttg tgccttgccc tatgctaacg
     9781 gtgcaattca tttaggtcat atgcttgaac atattcaagc agatatttgg gtgcgttttc
     9841 aacgtatgcg tggcaatgaa gtccactttg tctgtgctga tgatgcccac ggcacgccta
     9901 ttatgcttaa tgccgataaa ttaggcatta cccctgagca gttaatcgaa aaagccaaag
     9961 ccgatcacga agcggatttt gccagtttta atatcagctt tgataattac cattccaccc
    10021 acagcgaaga gaaccgccaa atcactaccg atatttataa aaccttaaaa gcgaacggtt
    10081 ttattaaaag caaagtgatt tcacaactgt tcgacccaga aaaaaatatg ttcttgccgg
    10141 atcgctttgt gaaagggacc tgcccgaaat gtaaagccga agatcaatat ggcgataact
    10201 gtgaagtatg tgcctctacc tatagcccga tggatttaat caaccctcgc tcggcagttt
    10261 ccggtgcaac tccggtggta aaagaatcag aacatttctt ttttgacctg ccaagctttg
    10321 agggaatgtt gaaagagtgg actcgttccg gctcactcca acctgaaatt gccaataaaa
    10381 tgcaagaatg gtttgaaagt ggtttacagc aatgggacat cagccgtgat gccccttatt
    10441 tcggttttga aattccggac gcagaaaaca aattcttcta cgtttggtta gatgccccta
    10501 ttggttatat agcatcgttt aaaaatttat gcgaccgtgc aggcattgat tttgatgagt
    10561 tttggcaaaa agattccacc accgagcttt atcacttcat cggtaaagac attgtttact
    10621 tccacagcct gttttggccg gcaatgttgg aaggcagcgg ctaccgcaaa ccgaccaatg
    10681 tgtttgctca cggttatgtg acagtggacg gggcgaaaat gtcgaaatct cgtggtacat
    10741 tcattcaagc caacacctat ttaaaacatc tcgatccgga atgcttacgc tattactatg
    10801 cggcaaaatt aaacgatcgc attgaagatt tagattttaa tttagacgac ttcgtgcaac
    10861 gtgtaaacag cgatatcgta aacaaattag tgaatcttgc ttctcgcaac gccagtttta
    10921 tcgctaaacg ctttgagggc aaattagctg aaaaattaga tgacgaagcg ttatttaatg
    10981 aatttaccgc tcaagcagaa accatagcga atttctatga aaaccgtgaa tttaataaag
    11041 ctattcgtgc cattatggaa ttaaccgata aagccaataa atacattgac gacaaagccc
    11101 cttgggtcat cgccaaagaa gaaggcaaag aggctgaatt acaagcggtt tgttcaatgg
    11161 gcattgagtt attccgtgtg ctgatgagct acctaaaacc ggtgttacca aaactggcag
    11221 aacgtgccga agcattctta caaagcgaat tgcgttggga taatatcgct accccattat
    11281 tcgggcatac cgtggcaccg tttaaatcgc tattctcacg ccttgagaaa aaacagattg
    11341 atgcagtgat tgatgaaacc aaagccttat ttgccgaagc gaataagaaa accgaaaacc
    11401 aaaccaaagg aacacaaaaa gtggaacaac aagcggtcga aaaacaagaa aatattgcag
    11461 ttgagccaat cagccctgaa attacgattg atgatttcgc gaaattagat ttacgtgcag
    11521 ccaaagtatt gaactgcgag gctgtgccaa aatcagacaa aatgttacgt tttgagctgg
    11581 atttaggcga ccaccaacgc caagtattct caggcattaa ggcggcctac ccaaatccgg
    11641 aagcacttat cgggcgtttt gtgattgtaa ttgccaacct tgctccacgc aaaatgtcgt
    11701 tcggtatgtc ggagggaatg attttatctg ccggcacagg cggtgcgaac ctgttcttat
    11761 tagatgcaga cagcggtgtt cagccgggaa tgcaagttaa ataggagaag atgatgattc
    11821 aacaaacgct ttctattatt aagccggatg ctacacgccg taatttaatc ggcaaaattt
    11881 tggctcaatt ggaagaaaac gggctgacta tcaaagctct aaaaaaagta catcttaccc
    11941 gtgagcaagc ggaaggattt tatgcggaac acaaaggcaa agatttcttt gagccgttag
    12001 tggaatttat gacatcagga tctattgtcg tttctgtact ggaaggggaa aatgcaatta
    12061 gccattatcg tgcattaatg ggggcaacca atccggataa ccgtgaaaaa ggcaccattc
    12121 gcgatttata tgccttaagt atgcgtgaaa attcggtaca cggttcagat tccgaagagt
    12181 cggcaaaacg tgaaattgcc tacttctttg taccgagtga gattgtttaa taaagtaggg
    12241 gcgaaaattt tttcgcccca ctattgtaat tcgccctagc gtagattaaa tatattctac
    12301 gccaacaatg tcaaactcaa ctttgccacc cggtgtggta atgctgactg aatcgtccac
    12361 ctctttgccg attaaaccac gagcaatcgg ggaattaact gaaattaagc cctctttaat
    12421 attggcttca tcatcaccca caatgcggta agtgacttct tcatctgtat cagcattcac
    12481 taactgcacc gttgccccaa aaatcacttt gccgttgttt gccattttag tgacgtcaat
    12541 aatttgagca ttgcctaatt tgccttcaat ttcttgaata cgcccctcac agaaaccttg
    12601 ttgttcacgg gctgcgtgat actccgcgtt ctcttttaaa tcaccgtgtt cacgggcttc
    12661 tgcaatcgca tcaataattt gtgggcgacg cacatttttt aaaaaatcca attcttcacg
    12721 cagttgctct gcaccacgca ccgtcatagg aatttgtttc attaaatcta tttccttact
    12781 aaaaattatc ggtttacgaa ttaaaacgaa agggctatta ttcaatttct cactaaaaat
    12841 ttcaactccc cttttattat gatttttaaa aatttcactc gtgctttttt aaataaattt
    12901 atcttatcta cacttctgat tccaagcatt acacaggctg aaattaatac cgaagaatta
    12961 ttaaatacct tgcctgccgg tacttctgtt agttttattg ctaaaaattt agacactaac
    13021 caaatcatca cccaatacca aagtgatatt tttatgctac ctgccagtac ccaaaaagtc
    13081 tttacggcac tggcagcaaa attaacttta aacgatgatt tccgctttca aactgccctt
    13141 ttaaccaacg gaaaagtaga aaacggagtg ttaaaaggca atttaattgc ccgttttagt
    13201 ggcgaccctg agcttacaag cggtcaaatt tatcaattaa tgagcaaatt aaagcaacaa
    13261 ggtatcaata aaattgaggg ggatttaatt ctagacccgt cggttttcgc cagccacgac
    13321 aaagcctccg gttggatttg gaacgacttg acgatgtgct ttaacgcccc accggcggca
    13381 attaatgtgg atcacaactg tttttatgtc accttaaatg ccgaccaacc cattggcgaa
    13441 tttgctaaag tgaatgtgcc gtccgcttat ccggtgcagg tgtttagctc tgcttatatt
    13501 gtcgagccga aagaagctcc gttttgccag cttgatgtgg tggttcacga taacaaccgc
    13561 taccaaatca aaggctgtat ggctcgccag tctcaaccgt tcggcttaag tttttcggtg
    13621 caagacccaa ctaattacgg ggcaaatatg cttaaagccc agttaaaaag cctgaaaatt
    13681 gcctttaacg ggcaagtaaa agagccactt actgcccaaa acggcacgct acttgccgag
    13741 cattattccg agccgttgcc ggtattattg aaaaaaatga tgaaaaaatc ggataaccaa
    13801 attgccgatg ccctgtttag aaccgttgcc aacaagcaac acaaccgccc cgcatcgttc
    13861 caattaggta gttatgtgat tcgccagtta ttaaaaacca aagccaatat tgattttaaa
    13921 aacagcgtgg tggctgatgg ctcagggctt tcccgtcata atcaagtcag cagccgaaca
    13981 atgctggaga cccttgaata tatcgctcaa aacgaagaaa gcttaaaact gtttgaaacc
    14041 ttcccgattg caggcgtgga cggtactatt tccggcagag gctctatttc aacagaaccg
    14101 cttgccaaaa atctgattgc caaaaccggc tcactgaaag gggtttacaa ccttgccggc
    14161 tttatgaaaa acgcccgtgg cgaacgcatc gcttttgtgc aatttattaa cggctattcc
    14221 accggcgagc tcgaaagcaa aaccaaacgg gctccgctta atacatttga aaataagttt
    14281 tatatggcgt tgtttaatga atagggctta tattttgtgt gatggatttt tgagaattga
    14341 ataagacagc ggtcgtaaat ttttgaaatt ttacgaccgc ttgctcctct ctaagcaatt
    14401 aaatctcgat gacttcgttg catttttacc tcaatataac tacaacttgg cttgattttc
    14461 agcccttttt cttgcgcaaa cgcaattaaa gcattgtaaa gctctcctgc aataccttta
    14521 ccttgaaagg catcatctac tcgggtactg taagcatcaa tcacgttctc ttttatgtag
    14581 cgataacgta gtgtgcctgc ttttaggttg ttttcggtaa aatactcaaa tacgaaatct
    14641 gctaaattgt ggttaatcat agttcctccg atttttttcc tctattctac ccgctttaat
    14701 cacgagtgca agcggtcgat tttgcagaaa aatttgcaaa atcgaccact tgtagatgaa
    14761 aaaagcaaac gtttgcgtta taatctttgc cgtttatttt cacgttaaca ctcattttaa
    14821 ggaatttaag aatggcgatt caacaggcgt tattaagtgt gtctgataaa aaaggcattg
    14881 tcgaatttgc tcgtgggcta tcggctcgtg gggtaaaatt actttctacg ggcggaaccg
    14941 caaaattact ggctgaagcc ggtttgctag taacagaagt atcagattac accggctttc
    15001 ctgaaatgat ggacgggcgt gtaaaaaccc tgcacccgaa agtgcacggc ggaattctag
    15061 gtcgccgtgg tactgatgat gaagtgatga accaacacgg cattgaacga attgatatgg
    15121 tggtagtaaa cctctaccct tttgctcaaa ccgttgccaa tccaaattgt agccttgaag
    15181 atgcggtgga aaatattgat atcggtggtc cgacaatggt gcgttctgca gcgaaaaatc
    15241 ataaagatgt ggcgattgtg gtcaataaca atgattttga tgctattctt gccgaaatgg
    15301 atcaacatca aaacagttta actttagaaa cccgttttaa tcttgctatt aaagcgtttg
    15361 agcataccgc acaatacgat tcaatgattg ccaactattt cgggcaaaaa gtgccgcctt
    15421 atcaaggggc tgaggaagaa gatttaaccc aaccaagtgg acaattccct cgcaccttaa
    15481 acctcaattt tgtgcgtaaa caaacgatgc gttatggcga aaattcgcat caaaacgctg
    15541 cattctatgt cgaaaatgag ttaaaagaag cctctgtttc caccgccaaa cagttacaag
    15601 gtaaagccct ttcgtataat aatattgcag ataccgatgc ggctcttgaa tgcgtgaaag
    15661 aatttagcga gcctgcttgt gtgattgtaa aacacgctaa cccttgtggt gttgctttgg
    15721 gtaaaaatat tttagatgcc tacaaccgtg cttaccaaac cgatccaact tctgctttcg
    15781 gtggcattat tgcctttaac cgtgaattag acggcgaaac tgctcaaacc atcgcagacc
    15841 gtcaatttgt tgaagtgatt attgcaccaa ccgtttctgc ttctgccaaa gaagtgttag
    15901 ccactaagaa aaacgtgcgt gtgcttgaat gtggcgagtt ctcagaagct gtaaaacgct
    15961 tagatttcaa acgggtaaac ggcggattat tagtgcaaga tgccgaccaa ggctctgtat
    16021 ctattgacga tttaaaggtg gtttcagagc gtaaaccaac tgaagctgag ctaaaagacc
    16081 tattgttctg ctggaaagtg gcgaaatatg tgaaatcgaa tgcgattgtg tatgccaaag
    16141 acgggcaaac tatcggtatc ggtgcagggc agatgagccg tgtttattcc gcaaaaattg
    16201 caggtattaa agcggaagac gagggcttac aagttgtggg ttgtgtaatg gcttccgatg
    16261 cgttcttccc gttccgtgat ggtattgacg ctgctgcaaa agtagggatt acttgtgtga
    16321 ttcacccagg tggttcaatg cgtgatcaag aagtgattga tgccgccaac gaacacggta
    16381 tggcagtggt actaaccgga atgaggcatt tccgtcatta atgttctaca aactaaaagg
    16441 ctaccttatt ttgataaggt agcctttttc attaattaat cacaaggtaa aattttgatt
    16501 gctaagccac cggttgaggt ttcacggtat tttgcattca tatctttgcc ggtttcgtac
    16561 attgtttcaa tgactttatc taaacttacc tgaggcgaag aagtacggcg tagtgccatt
    16621 ctgctggcat taatcgcttt gactgaagcg attgcatttc tttcaataca aggcacttgc
    16681 acttgtccgc caacagggtc acaagttagg cctaaattgt gctccattgc aatttctgca
    16741 gccatacaca cctgttcagc actgccaccc ataatttccg ttaaacctgc tgccgccatt
    16801 gaacaagcaa caccaacttc cccttggcaa cctacttcag caccggaaat agaggcattc
    16861 attttgtata acgaaccaat cacactggta gtcaataaat aacgctcaat agtatcttga
    16921 ttaagctgtg caataaattt ttggtagtac gccaacacag ccggaacaat accacaggct
    16981 ccattggtag gtgcggtgac tactcgccca cctgccgcat tttcttcatt cacggcaagg
    17041 gcaaacatat tcacccaatc gataatttgc attgggtcgg tattgaattt actgtttgcc
    17101 tctaacattc tgcgtagccc actggcacgg cgtaccactt tcagaggccc gggtagtaac
    17161 ccttccgtat tcaaaccacg ctcaatacag gcttccattg tattccaaat cattgccaaa
    17221 taatccgaaa tttctactct actgcgtaaa gcaagctcat ttttccagac taaagaagaa
    17281 agcggtaacc cgttattctt acaatgtgca agtaaatctg ctgcattctg atatgggaat
    17341 ggaacagaaa gatctgaatt tttaacttgc tcaaagttag cttcatcaac aataaagcca
    17401 ccaccaatag aataataggt gttttgaaat agcaactctt caccgctcaa ggcactaaat
    17461 ttcacaccat tttcgtgccg aggtaagaaa tctcgatgaa atggcatatc ctcataaaaa
    17521 tcgaacgcaa tcactttagg ctcaacactg ctttcagcaa tgataagttg cttattttgt
    17581 tttagatttt caatcgtctg ctcaatacgt tcaatatcca cattatgagg caaatacccc
    17641 attaatccca ttatgatggc aatatccgta ttatgtcctc gcccggtgag tgataatgaa
    17701 ccatagacat ctacccgcaa gcggtcaatt ttgtttaaaa atttgcgatt ttgtaattca
    17761 tcgacaaatt cctttgccgc tttcatcggc cccgcagtat gggaactgga aggcccaatc
    17821 cctactttaa acatatcaaa tacactaatc ataaacacaa attcacatag aaaataaaag
    17881 ggcgtattct acattgattt tagaaagatt acagtaaccc atatactatt gctgaaatag
    17941 caatacaacc cataacaagc acaaataaat ggccaaattc acctttaaaa cgtgcaagtg
    18001 ccggtacttt atatacggca tagacaggca taataaacaa gatcatcgca ataatcggcc
    18061 caccaaggct ttcaatgaag cctaaaatgc ttggattgat agtcgcaaca atccataaaa
    18121 tgatcaaaaa agtaatagcg gtaattttgc ggaatttgct tggatcaatc ggctctttac
    18181 gcatttgatt aaccaatcct tctaacccct cgcgcgcacc taaataatgc ccaaagaaag
    18241 agctaccaat cgccaaaaaa gcaaccaacg gtccaaaata ggaaataatc ggattatcaa
    18301 atttattcgc aaggtaagaa agaatcgaaa tattttgcac tttagcttgt gctaattctt
    18361 caggtgtcaa agttaataca cagctaaata caaagaacat cacaaataac accaagataa
    18421 aggcggtaga acgtaatact ttagctgatt caatttcagc cttcttgtca tcttggtaat
    18481 atttctgttg agaaagtgca aaagaagaaa tagccggtga atggttaaaa gcaaagacta
    18541 aaacaggaat agtcagccaa agtgtagtaa ggaagtctcc tgtagttggc atttgctgta
    18601 aggcagctgt attccactgt ggaattaaat aaatagataa gcccaataaa atcaacacta
    18661 atggatacac aagacaagtt gtgattttta acatgacttg ctcacttaat aacattactc
    18721 cgatcatagc agctattagc ataaacgata atacagccct agatggtggc gcgatatgaa
    18781 gctgattctc cataaaagaa ctcacggtat tggtaatacc tacaccataa atcagtaaaa
    18841 tcggaaaaat ggcaaagaag tacagtagcg tgatcaattt accggcctgt tcaccaaaat
    18901 gttcacgaac aacagccgta atatcgctcc ctttgtattt tgaagaaagc acaaaacgtg
    18961 ttaagccacg gtgagctaaa tatgtcattg gtccaactaa caaagtcata ataataagtg
    19021 ggtagaaccc acccatacct gcattaattg gcaaaaataa aacgccggct cctaccgcag
    19081 taccaaataa atttagtacc caagtaagag aaaaacgttg agatggcata gccatagtaa
    19141 tctcctttaa agaattatct aacaagctat gctatattag cgatgggaaa cagtaacaca
    19201 acaagatttt acgtattttt tgatcaaac
//
LOCUS       DANMGB010000034        18977 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.034, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000034 DANMGB010000000
VERSION     DANMGB010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18977
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.034"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            65..2500
                     /gene="plsB"
                     /locus_tag="PXG19_000871"
     CDS             65..2500
                     /gene="plsB"
                     /locus_tag="PXG19_000871"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL6066191.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(2605..3168)
                     /locus_tag="PXG19_000872"
     CDS             complement(2605..3168)
                     /locus_tag="PXG19_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL6066192.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(3366..4262)
                     /locus_tag="PXG19_000873"
     CDS             complement(3366..4262)
                     /locus_tag="PXG19_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6066193.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            4398..4739
                     /locus_tag="PXG19_000874"
     CDS             4398..4739
                     /locus_tag="PXG19_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6066194.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            4750..5103
                     /locus_tag="PXG19_000875"
     CDS             4750..5103
                     /locus_tag="PXG19_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6066195.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            5163..5801
                     /locus_tag="PXG19_000876"
     CDS             5163..5801
                     /locus_tag="PXG19_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL6066196.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            5936..7117
                     /gene="purT"
                     /locus_tag="PXG19_000877"
     CDS             5936..7117
                     /gene="purT"
                     /locus_tag="PXG19_000877"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL6066197.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(7209..8702)
                     /locus_tag="PXG19_000878"
     CDS             complement(7209..8702)
                     /locus_tag="PXG19_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6066198.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            8903..10750
                     /gene="ilvD"
                     /locus_tag="PXG19_000879"
     CDS             8903..10750
                     /gene="ilvD"
                     /locus_tag="PXG19_000879"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL6066199.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(10884..11234)
                     /locus_tag="PXG19_000880"
     CDS             complement(10884..11234)
                     /locus_tag="PXG19_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL6066200.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(11263..11928)
                     /locus_tag="PXG19_000881"
     CDS             complement(11263..11928)
                     /locus_tag="PXG19_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL6066201.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            12134..12682
                     /gene="pgsA"
                     /locus_tag="PXG19_000882"
     CDS             12134..12682
                     /gene="pgsA"
                     /locus_tag="PXG19_000882"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL6066202.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            12760..14598
                     /gene="uvrC"
                     /locus_tag="PXG19_000883"
     CDS             12760..14598
                     /gene="uvrC"
                     /locus_tag="PXG19_000883"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL6066203.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(14603..14878)
                     /locus_tag="PXG19_000884"
     CDS             complement(14603..14878)
                     /locus_tag="PXG19_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066204.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(15003..15356)
                     /gene="rplT"
                     /locus_tag="PXG19_000885"
     CDS             complement(15003..15356)
                     /gene="rplT"
                     /locus_tag="PXG19_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL6066205.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(15465..15662)
                     /gene="rpmI"
                     /locus_tag="PXG19_000886"
     CDS             complement(15465..15662)
                     /gene="rpmI"
                     /locus_tag="PXG19_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL6066206.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(15926..16468)
                     /gene="infC"
                     /locus_tag="PXG19_000887"
     CDS             complement(15926..16468)
                     /gene="infC"
                     /locus_tag="PXG19_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL6066207.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(16627..18426)
                     /gene="recQ"
                     /locus_tag="PXG19_000888"
     CDS             complement(16627..18426)
                     /gene="recQ"
                     /locus_tag="PXG19_000888"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL6066208.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(18535..18840)
                     /gene="cyaY"
                     /locus_tag="PXG19_000889"
     CDS             complement(18535..18840)
                     /gene="cyaY"
                     /locus_tag="PXG19_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL6066209.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         5511 a         3607 c         4155 g         5704 t
ORIGIN      
        1 atggtagaat ggaagaaatt agaggttaga cctccaacaa taacgattct aaaaggatat
       61 ttatatgtct ggcttattaa atttttatcg agctttccta aacttaccac tttcactttt
      121 agtaaaatct cgctctattc cgactcatcc ggtggctgaa ctggaactaa atcttgaaca
      181 gccgattgtc tatgttctac cttatacctc gcaaaccgat ttattaattt tacaaaaaaa
      241 ctgcttggct ttgaatttgc ccgatccgtt gcaagaaaat gtgattgaag ggcaaacatt
      301 gcttcgtttt gtatttttag atgaaggtcg ccgttttttt aaatctaaag gggcgaaaag
      361 tgagacagag tcgatttttt atcgttattt agatttacat cgtgctaatg ctgaattaga
      421 cgtccaatta gtgccggttt cggtattatg ggggcgggct ccgggcaaag aagatgcccg
      481 ccatttacag gtgcttacct cattccaacg ttttttatcc atggtttggt ttgggcgtga
      541 taattttgta cgtttctccc ctgcagtatc gttacgctat atggtaactg aatatggtgc
      601 agatgaaaaa atcgctcaaa aaatcgcgcg tgtggcgaaa atgcactttg caaaattgcg
      661 ttattcagca atggggcctc gtttaccaaa tcgtgatgcg atgtttaata aaatcctgaa
      721 ttcagaggtg attcaagctg cgattgcgga agaagcgaag aaatcatcgc ctgaaaaggc
      781 tcgcaaagaa gccgagaaaa tcattaatga aattgccgct gatgtaaaac acgagagttt
      841 gcgtgtagca gatcgagttc tgagctggct ttggaataag ctttatcaag ggatcaacgt
      901 gcaaaatgca gaccgtgtgc gtaaattggc attagaaggt cacgagatcg tttatgtgcc
      961 ttgccaccgt agccatatgg actatttgct cctatcttat ctactttacc atcaaggatt
     1021 agtaccgcca catattgccg ctgggatcaa tttaaatttc tggccggcag gcccgatttt
     1081 ccgtagttgg ggagcatttt tcattcgccg tacctttaaa ggaaatcgcc tctattccac
     1141 cattttccgt gaatatttag cggaattatt ctatcgtggt tattcggtcg aatattttat
     1201 tgaaggcggg cgttcacgca caggtcgttt attagagcct aaaaccggta tgatgtcgat
     1261 gagcctacaa gccttacagc gagggctgaa tagatcttta agtattgtgc ctgtttatat
     1321 cggttatgaa cacgtcttag aagtcgatac ttacgctaaa gagttgagag gtgcggcaaa
     1381 agagaaagaa aatgcgggct tggtgctacg agtgctgaaa aaactgaaaa atttaggtca
     1441 aggatatgtg aatttcggtg agccaatttt ggtgaataat tacttaaatc aatatttccc
     1501 tgagtggaaa gagccttccg aagatggacg acctaagtgg ttaaatgaag ccgtggataa
     1561 tatttcacat caagtaatgg tgaatatcaa taaagcggca gcagttaatg cgaaaaactt
     1621 agtggggtca gcattattgg catctcgcca gcgtgcatta acccgtgaac aactcattga
     1681 acaacttgga agttatattc agttatttcg taatgtacct tattctaaag atatgacatt
     1741 accaactgaa agtgcagaag tgatgttgaa tcatgttatt catttacctc gttcgggcgt
     1801 tttaattgaa aaagataatt ttggtgaact ggttcgttta gaacgagaat ctgctgtgtt
     1861 aatgacatat tacagaaata atgtgcagca tttatttgtg ttgccttcac ttgttgcaag
     1921 tatggtactt catcatgagg ctgtttcgaa agatgttgtg attaagtcgg ttaatcgtat
     1981 ttatccattc ttgcaagcag agttattctt acactttaag caagaagaat taaaagcaca
     2041 tattgaagca attattgcgg aactaagtcg gcagggggtg attaaaaacg aaagtgatat
     2101 gttaatgatc aatcgctcac atattcgtac cttgcaatta cattcagctg gtgtgcgtga
     2161 aatccttcaa cgttattata ttagcctaag tgtcttgttg gagcagccaa atattagtcg
     2221 tggctattta gaaaaagaga gtagttcaat tgctcagcgt ttatcagtct tgcatggtat
     2281 taatgcgccg gagttttttg ataaggcgat tttctctacc tttacatcaa gtctaaaagc
     2341 acaagggtat tttgatggtg atgataattt agcgattgca aaagttaaag aaacggaatc
     2401 gttgttacgt agtttgattt cgattgaagt tcaacagacc attcaaggtg cgatggctaa
     2461 agtcgcagaa tctgtagaga atcctaatat cgcaggataa taaatcaaag aagggcgcta
     2521 acaagcgctc gtttcttgca attttgttgc caaaaataaa agctgaatgc gcgaccacat
     2581 tcagcttttt tacttcctat ataattattt tggttcaccg attggtaaaa cagtcttacc
     2641 aaaactttca ttaataatat ccgcagcggc taagtagaac gctaagaatg cggttaataa
     2701 accgaagtta ccaccaatgt tagttagggt ggtgttatgg gtaaaatcac ctgcggctaa
     2761 aaggtagaaa gtaatggtta aacttaagaa aatagcttgt aatgcacggg cttttgctag
     2821 tgtgccgatg aacatcataa gtgtgaatgt tccccaagct actaagtacc aaccaacgaa
     2881 ttctgccgat acattcgcag caaagaacac tttaaataat gcaaaagacc accagaatgc
     2941 accatagctg gtaaacgcag taaagccgaa cgtgttacct ttagcaaatt caaacatacc
     3001 tgcaatcatt tgtgatgtgc caccgaaagc aaatcccatt gctaaaacta aacctacgtt
     3061 ttcaccgctg aatgtaccgt tattgattag gcttagtaaa aatgtagtaa gtgcaaaacc
     3121 gcataaaccg agcggagccg ggttagttcc tgaatttgga gctgacattg aaaacctctg
     3181 ttatattgtt acaccataag tgtggtaatt gtttatttac gccgataaat cagacgttat
     3241 gtgcctaaaa tttagggcga taaagtatag cgattttgca gtaaattgac tagaaatttc
     3301 cgagacaagc ggtgagattt ttgcaaaatt ttgccaaaaa atgaccgctt gttgttgtca
     3361 tttagctatg gatttaactg ccgatattgg ctgggtgtta cgcaatattg ctttttaaag
     3421 gcggtaataa aatgcgactc ggattggaag ccgcaagata aggcgatact taataccgac
     3481 ccagcttggc ttttgagcag cattgctgct ttttgtagcc taattttgtg tacaaaagca
     3541 tgtgggctaa tacataaatg tttgttaaat aagcggacta actgggcacg agaaaggtgg
     3601 ataaatgccg ccatatcatc gacttgccat tcgtgttcgg gattaagcaa aatagctttg
     3661 atcaaaggtc ttaagtgtaa gtcttgccaa ccttttaaaa taccgaataa ctgattgtta
     3721 tggttaacta gatgttctcg taagatcata gttaaaataa caacagcaag cgagttaacc
     3781 acagatttta cggctaaatt aggtgtttct gcttcttgtt ttagaatatc taacattgct
     3841 tttaatggtg tctcggcaac ttgaaatacg atcatttcag gtaagctttc cattaattcg
     3901 gcttgatggt cataataaaa atggaggcag aacatatcgc attctgattg agaaagtcct
     3961 gcttgggtga gtgtaaatgc acccaattgt tcagggttta ccgcattttt gctggtcaaa
     4021 ggctgtattt gactacgtaa tgtatgatcg gcaaatctgg ggaaaaatac aatatctccc
     4081 tgtttaaggt gatgggtttt cccattatgt tgtagataag cttgcccata gctgatgata
     4141 tgagcgattg cttgtccggt ttgatgcgga ttctcaagtt gccaatctcc ctgtaactga
     4201 catttcacac tgattccggc tgagatttga gcgaaagcta gaagcctatc taatatatcc
     4261 attgttcatt ccttatattt ccaccttaaa ttgcgattat ttcattataa tatgagctga
     4321 tttgataata aagtttatca gataaacgca ataataaatg cgttttttca tattattcac
     4381 tttaggagga aatcaatatg tcttcattcc aaaattggac agaacacaca gctcacgtta
     4441 agcaatcttt tggtaaatta gggcaaaaac accctaaaat gcttgaagct tataaagcat
     4501 taggtacagc ggccgcagcg gaagcattag atcacaaaac tcgtgaatta attgcattag
     4561 cagtagcgat tacaacacgt tgtgaaagtt gcatcagtgt acacgcagaa gaagcggcaa
     4621 aagcaggtgc aaccgaaagc gaaattgccg gtgcattagc gactgcgatt gcattaaatg
     4681 ccggtgcggc atatacctat gctttacgtg cattagaagc ggtggaagag caaaaataag
     4741 gagcaataaa tgaagaaatt ggcttggatt ttaggctttg cagctatgat gccaatgatg
     4801 tctagtgcta aacaagcatc agttcagcaa gtgcaggctg aaaaagcagc gggcatttgg
     4861 attgatgtac gttctgctga agaatttcag caagggcatt taaatggtgc aattaatgta
     4921 acgcatactg aaattgcaca acgtatcgca gaagttgctc cagataaaaa tcagccgatt
     4981 catctttatt gccgctcggg tcatcgagct gaagcggcgc ttaatgagct aaaaaaatta
     5041 ggttacagca atgtaactaa tcatggtggt tatgacgatc tgattaaagc cgggttgaaa
     5101 taactgtttt gagtgccaag catttgcttg gcacttttcg tttatatctg aggttaaaaa
     5161 ttatgagtgc ttttaacaat tttgttaatt ttgttgcaaa tattgttgct ccaatgcaac
     5221 gccaattcat taactttgta cgtattgcca tttgtatcgt gatggtttgg attggtggtt
     5281 taaaagtctg ccaatatgaa gcagacggta ttgcccattt tgtgtctaat agcccgttct
     5341 ttagttatat gtacaaaaaa ggcccgaatt tagttgatga cggcacaggt aaaatggtga
     5401 tggaatatac ccttcacaaa aaccctgaag gtaaaatggt ggcaaaaaac atcgaatggc
     5461 ataaagaaaa cggcacttat actgcatctt atatcatcgg tgcaaccatt gtgacggttg
     5521 gtttattgac gttatccggt atttggttcc cggtttccgg tatggcgggg ggcttactca
     5581 cctttggtat gtcgattgtt acactctctt ttatgatcac cacccctgaa atttgggtgc
     5641 cgaatttagg tggggatatg ccaaccccag cgcatggttt cccatatctg tcagcagtcg
     5701 gtcgtttaat tgtgaaagat gtgattatga tggcaggcgg cttggttgcc gcagcggaat
     5761 gtgcaaatcg cattttagcc agacgtaaag cgattgctta attgatagtg gtaatgcaag
     5821 cggtcatttt cttgtaaaat tttgcaataa aatgaccgct tgttttttgt caatttgcca
     5881 taatttcaag tataattcaa ttacgtaatc gtttgctttt atggagagga ataaaatgac
     5941 aacaatcggt acaccgttaa gaacgaacgc tacaaaagtg atgatgttag gttcgggcga
     6001 gttggggaaa gaagtggtaa tagagctgca acgcttaggc gtagaagtga ttgcggtgga
     6061 tcgttatgac aatgcacctg cacagcaagt ggctcaccgt gcttatacga tttcgatgtt
     6121 agacgggaat gcattgcgag atttggtgga gaaagaaaaa ccggatttta ttgtgcccga
     6181 agtagaagcc atcgcaactg caaccttggt tgagttagag caagagggat ataacgtaat
     6241 cccaacggca aaagcaacgc aattaacaat gaatcgagaa ggcattcgcc gattggcggc
     6301 agaagagttg ggcttaaaaa cgtcgcctta tcgttttgtg gataattttg aacagttcca
     6361 gcaagcgatt caagaaatcg gcattccgtg tgtggtcaaa ccgattatgt cttcttccgg
     6421 acacgggcaa tcagtaatta aatctgaagc ggatattcaa caggcttggg attattcgca
     6481 acagggcgga cgtgccggcg gtgggcgtgt gattgtagag ggttttatca aattcgatta
     6541 tgaaattacc cagcttaccg ttcgccatat tcacggcacg tcgtttttag ctcccatcgg
     6601 gcatattcag gttgatggcg attatcgtga atcttggcaa ccgcagcaaa tgtcggacat
     6661 tgcattgaaa aaagctcaag aaaccgcaga aaaaattacc tctgcactgg gcggaagagg
     6721 gattttcggc gtggaacttt ttgtctgtgg cgatgagatt atttttaacg aagtctcccc
     6781 acgtccacac gataccggaa tagtaacaat ggcatcacaa gagctttctc aatttgctct
     6841 gcacgcccgt gcgattttgg gcttaccgat tccggaaatt taccgcatca gcccggcagc
     6901 ttctaaagcg attgtggttg aagggaaatc ggataatgtg cgttttggcg gtgtagataa
     6961 ggtattagcc gaaatcggga cgaatatccg cttattcggt aaaggcgaag taaacggaca
     7021 ccgccgatta ggggtaattc ttgctcgtga tgaaaataca gtgagagcat tagaaaaagc
     7081 tcggcgagct tatgataagt tagatattca attataaagt caggattttg atattcgttg
     7141 atagtaggca ttttatgcct actatcctat aggcctctaa tcaaattgga tgaaaaagtt
     7201 gaagattgtt aatcctcttt gccgagaatt tggttcactt cgctcttata caatactgct
     7261 tttgctccaa atacggcttg tacaccgcca ccgacttcca gcacgtcaat cgcaccgagt
     7321 tttttcagtg ttgctttatc cacggctttc acctctttca ctgccacacg cagacgggta
     7381 atacaagcat ccacattttc gatattattt gcagagccaa gagcggcgat aattttatgg
     7441 gcattttcag tcagtgagct ggtttgttgt tcgactacct cttcactctc ttccgcacgt
     7501 cccggtgtca ttacgttgaa ttttttgatc aggaatagga acgagaagta gtaaagtgcc
     7561 gcccacggca agccgactat gatcactcga agccagttag tgttctcgtt gccttgcaaa
     7621 atgccaaaca gggtgaagtc gatcacgcca ccggagaagg tgttaccaat cgagatgttg
     7681 agtaagtctg caatgtagaa cgacacgccg tctaaaaaag cgtggaacac atagagccac
     7741 ggggcaacaa acaggaacat aaattcaatc ggctcggtaa tgccggtgat aaaagaggtg
     7801 agcgctgcac ctaagaacag accgctaatc gcaccacggc gggctttcgg cacagcgtga
     7861 tacatcgcta aacaggcggc aggtaagcca aacatcatcg tatcgaaacg tccagcgaag
     7921 aaacgtgtac cttcggtaaa taagccttga tgggttggat cggcgagttg ggcgaagaag
     7981 attttttgcg ccccgataat ggtttcacca tttaccactt ctgttccgcc caattcggtg
     8041 taccaaaaca gcgggtagat catatggtgt aagccgaccg caccgcttaa ccgcattaag
     8101 aaaccgtaga aaaaggtgcc gatttcgccc atttccgcaa tcccttgccc tgctgaaacc
     8161 aaccactgtt ggaaagccgg ccagatcaaa aagaacactg ccccgacaaa aatcgcagca
     8221 aaggcggtca caatcggcac aaaccgagag ccgccaaaga agccgagaat ttgcggcagc
     8281 tgaatgttgt ggtatttgtt atgcagtttc accgtaatca agcccattac cagcgagccg
     8341 atcacaccgg tatcaatccc tttggtttca ggaggaaaca gcggaatgag ggcagaaatc
     8401 gtgcctgtca taatcaaata accgaccact gctgccagtg ccgctacgcc tttatctcgt
     8461 tttgctaatc caatgcctaa accgatacac agtaataatg caaggttgcc aaacaccaca
     8521 ctgcctgccg atgccataat ctggaaaatg ccctgtaaag tcgggttatc cagtatcggg
     8581 taggcttgca ccgttgcctt attcgacaaa gctccgccaa tccctaacag caaaccggct
     8641 gccggtaaaa tcgcaatcgg cagcataaaa gcttttccga cttgttgcag ttgtttgaac
     8701 ataaaatttc tcctttttta tggttgtatt tgatggttta tagcatactg aaatttagcc
     8761 gtatgaggtg tgatataact cacagatttg caaaattttt agcaaattcg accgcttgta
     8821 aaaaaattac cgcttgcgga aaaattgaag tagaattaag cattttttta gcaaacacaa
     8881 cataaaaaat ttggagaaga ttatgcctat tttacgttca gcaacttcca ctcagggtcg
     8941 taatatggcg ggggctcgtg cattatggcg tgcaaccggt atgaaagaaa atgattttgg
     9001 taagccgatt attgcagtgg tgaactcatt cacccaattt gtgccggggc acgtccactt
     9061 aaaagatatg gggcagttgg ttgcggcaga aattgaaaaa gccggtgggg tggcaaaaga
     9121 attcaacacc attgcggttg atgacggcat tgcaatggga cacggcggaa tgctttattc
     9181 tttaccaagc cgtgatttaa ttgcagacag tgtggaatat atggtgaatg ctcactgtgc
     9241 tgatgcgatg gtgtgtatct ctaactgcga taaaatcacc ccgggaatgt taatggcagc
     9301 aatgcggtta aatattccga ctatttttgt ctctggtggc ccgatggaag ccggaaaaac
     9361 taaactttcc gatcaattaa ttcgcttgga tttagtcgat gcaatgatcg aaagtgccga
     9421 cccgaatgtg tctgatgaac gtattgatgc gattgaacgt agtgcttgcc cgacttgtgg
     9481 ttcttgttca ggtatgttca ccgcaaactc aatgaactgt ttaactgaag ctttaggctt
     9541 aagtttaccg ggcaatggtt caatgttggc aactcatgct gaccgtaaag agcttttcct
     9601 aagagcaggt cgtgaaattg tggaactttg ccgtaaatat taccaacaag acgatgagag
     9661 cgtgttacct cgctcaatcg ctaccttcga tgcatttgaa aatgcaatga gccttgatat
     9721 tgcaatgggt ggttcaagta ataccgtgct tcatttacta gcgactgctc aagaagccgg
     9781 cgttgatttt aaaatggaag atattgaccg cctctctcgt gtcgtgccgt gcttaagtaa
     9841 aattgccccg aataccaata aataccatat ggaagacgta caccgtgccg gtgggattat
     9901 gggcttgctg ggcgaattag atcgtgcagg tttaatccat cgccacgtta aaacagtgct
     9961 aggtttaacg atagaagagc aactgaatca atacgatatt attcgtaata aagatgaaga
    10021 tttacacaaa ttcttccgtg caggtccggc aggaattcgt actactaagg ctttctcgca
    10081 agattgccgt tgggacactg ttgatgatga ccgtgtaaac ggctgtattc gcaatgtgga
    10141 aaatgctgtg accaaagagg gcgggttagc ggtattattt gggaatattg cagaagatgg
    10201 atgtattgtt aaaaccgcag gggtagatga gtctatttgg aaattcactg gcaccgcaat
    10261 cgtgtttgaa agccaagaag atgcggtagc aggtatttta ggcggaaaag tgaaagaagg
    10321 gcatattgtg attatccgct atgaaggtcc gaaaggcggc ccgggtatgc aagaaatgct
    10381 ttatccaact agttatttga aatcaatggg cttaggcaaa aaatgtgctt tattaactga
    10441 cggtcgtttc tctggcggta cctcagggtt atctatcgga cacgcttcac cggaagccgc
    10501 ttcaggagga gcgattgcct taattaatga tggcgatacg gtggcgattg atattccgaa
    10561 tcgttcgatt aacttaatgg tttcagatga agaacttgct gctcgccgtg cagaaatgga
    10621 agcccgtggc gataaagcgt ggcagccgct aaaacgtgag cgagaagtgt cgtttgcact
    10681 aaaagtgttt ggacattttg ccacctctgc tgataaaggt gcggtgaggg ataaatcgct
    10741 gttaaagtaa ataaattaga aaaaagaagc atttcaataa tatattgatc tgctctttat
    10801 tcagctgaat atttaatcta gctgaatgga gagcagatcg atagcctaat ttacatcttt
    10861 ttgttttgat acagggaaat gtattacaag cattttgccg gttttggcag acctgcaatt
    10921 ttagtggctt gttttgcagg accatcagga aacaagcgtt gtaaataacg gctgttgcct
    10981 ttttcttcac cgaatttttg tgccattgtc tttaccagca ttcgaattgc tggtgaagtt
    11041 ttgtattctt ggtagaaatc ccgcaccaga taaataattt cccaatgttc tgcggttaag
    11101 ctaatttgct ctttttcggc gattttttct gctaattcta cagaccaatc atttaaatta
    11161 gttaaatagc ctgaagcatc ggttgggtat tggatattat ttaattcaat cgtcatcaaa
    11221 taaaaatgcc acataatgtg gcattcctct taaactaaaa cgctagtcgt cactacctag
    11281 cacaccgaag atttgtaaga agcttacaaa taggttgtag atagacacat ataaatcaac
    11341 ggttgcacga atgtagttgg tttcgccacc gtgaataatg ttgctggttg ccagtaaaat
    11401 cgcaccgctt gagaaaatga caaacaagct gcttagggct aaacttaatg ccggaattgc
    11461 taagaagata ttggcaataa taccgactaa taataccaca aacagggcaa ccatcattcc
    11521 gctgataaag ctcatatctt ttttggtggt taatacataa gctgaacaag cgaagaaaac
    11581 caatgcggtt gcaccgaatg caagggcgac aatatcccct aaacccgcac cgatgtaacg
    11641 gtttaaaata ggacctaagg tatagcctaa gaagccggtt aaagcaaata cgcttaagat
    11701 acccgcactg ctgtttgagg tggcattcgt caagaaaagt aagccgtaaa agccgaccaa
    11761 taatccccac cacggcatag ccggtgcgtt catttgaatt gcaacaaaag caacaactgc
    11821 ggagaaagtc agggtcattg ccaataacat ataggtattg cgaagcactt tgtgggtgct
    11881 aattagagat tcaccagttg aatagctgtg agctaaacga ttttccataa aaattccttc
    11941 tgtttttgtg tttaaatcgg aacatccgat ggattaatat ctatggataa atttccataa
    12001 atcaagaagt aaggtagccg taatttattg taaagtcaat gcgattttgt aacagaagag
    12061 taaaaaaaaa catttagttg tgttacactt aataccactc tactttatat tccttttcat
    12121 cgatgaattc gctatgaagc tcaatttccc aacttattta accttatttc gggtaggatt
    12181 aaccccactt tttattgtgg ctttttatct gccgacaaaa tatgcgcctg aaatttcaac
    12241 acttattttt tttattgcat cgattaccga tgcctttgac ggctatttag cacgcaaatg
    12301 gaatcaaacc acccgacttg gtgcattttt agatcctgtt gcggataaag tcttggtagc
    12361 tgttgcgttt gtctgcgtgg cggagtatta ccatacttgg tggattacta ttccaatctg
    12421 cattatgatt gcccgtgaaa ttattatttc ggctttgcgt gaatggatgg cggagcttgg
    12481 ggaaagggcc agtgttgccg tttcgatttg ggggaaagta aaaacgactg ctcaaatgct
    12541 cgcattaggt ggaatgttat ggagacagaa ccaactaatg gagattttag cctttattct
    12601 gctttatatt gcagtgggtt taacgatctg gtctatgatg cagtatttaa atgcttcaaa
    12661 gaatagtcta ttgaagtcat aagcggtcat atttttattc ttttttgcaa tttgtagagt
    12721 ggaaatatcg ctctacaatt ttcaatttta tcaactctaa tgtctgaatt taacgctaaa
    12781 tccttcctgt taaatgtgcc tcaccaaccg ggtgtttatc gtatgtatga tagtaaaggc
    12841 acgataatct atgtgggtaa agccaaagat ttaaaaaagc gtttagccag ctattttcgt
    12901 agccaacttt ccagtaaaaa aacggaagcc ttggtggcaa atcttgctaa tattgaaacg
    12961 acgatcactc attctgaaac agaggcgtta ctccttgaac ataattatat taaggaaaat
    13021 cagccgaaat ataatgtgtt gctcagagat gacaaatctt atccttatat tctgttaact
    13081 aaacataagc atcctcgttt aacagcattt cgtggtagta aaaagatcgc cggtgaatat
    13141 tttgggcctt atccgaatgt tacggcagtt cgggaaacac tgaatttatt gcaaaaaatt
    13201 tttcctattc gtcagtgtga agatacttat tataaaaacc gttcacgacc ttgcttacag
    13261 tatcagatcg gacgctgttt agccccttgt gtagagggct gttattcacc cgttgaatac
    13321 gatcagcagg ttaatttggt tcgtttgttt ttacagggaa aagatcacca agtagtcgag
    13381 catctggtac agaaaatgga agatgcggcg gaggctttgg attttgaagg tgcggcacgt
    13441 tttcgggatc aaattcaatc agtaagagcg gtgcaagaaa aacaattcgt ctctaatgat
    13501 aggctagatg atcttgatat tatctcgatc gtttatcaaa atgggattgc ctgtgtgcat
    13561 atcttatttg ttaggcaagg taaggtacta ggcaatcgtt cttactttcc aaaagtgcca
    13621 agtaatacag atttaaccga gctcgcagat acctttgtcg gtcagtttta tttacaaatg
    13681 aaccagcacc gcaccatacc taaccaaatt gtaattgatc atcaattaag tgaatctaag
    13741 gcactcagtg aaattttaag tgagcaagca gggcataaag tcagcatttt agataatgcc
    13801 atcagaggtg ataaacagcg ttatttagct ttagcgagaa ctaatgcaat ggcagcatta
    13861 gttttacaac ttaagcaaga atcccatatt caaagccgtt atcaggcatt gaaagaaatg
    13921 ttgaaaatgt cagagattaa aagaatggag tgctttgaca tcagtcatac aatgggcaac
    13981 caaacagtgg cttcttgcgt ggtgtttgat gaaaatgggc cgctaaaatc ggattaccgc
    14041 cgttttaaca ttgaggggat taccggaggt gatgattatg cagcaatgga gcaggctctc
    14101 ttgaaacgct ataatcgaga attaccgcca gaaaagatcc ctgatattat ttttattgat
    14161 ggtggcaaag ggcagttgaa ccgagcgtta gatgtcttcg ctaaacttga tgtggaatgg
    14221 gataaatcga aaccgctttt aattggtgtg gcaaaaggcg tagaacgtaa agctgggctg
    14281 gaaactttaa ttatcagcaa atgggataaa gaaattcact taccgccaga tagtcttgcc
    14341 ttgcatttaa ttcagcatat tcgagatgaa tcccaccagc atgccattag tgggcatcgt
    14401 aaaaaacgcc aaaaggcctt taccgaaagt ggattagaat ctattgccgg tgtcggtgca
    14461 aaacgccgac aagcgttgct aaaatattta ggcggaatgc agggggtgaa gtctgcaacc
    14521 ttggaagaga ttcaatcagt tccgggaatt tctaaagcgt tggcagaggt tatttttgat
    14581 acattaaaaa atagttaaat tatcaatagc gatatcgctt ccagccgtaa tggtagccca
    14641 ctcctatgct tgggtaaatt atagggtgaa ttggcagatt tatgctttct gagcgtttat
    14701 cgctttggtt taatggctca tcatgttgct ttgtattttt atcaacagtt tgcttattga
    14761 ttactcgttg atggtaatcc tgaactgctt gcatatccat tggtactgtg ctttgttgtt
    14821 ggggtgtcga acaggcggtt agtgcaacgc tcaatccgag taaaattaat tttttcatat
    14881 catttcctta tattgcaaaa tattttgctt ttttgaccgc ttattttgct attaattctt
    14941 aaaaagatta ttttatccat aaaaaaggac gcactaggcg tcctcatttc tattctttaa
    15001 aattaaagag cagattttgc tttttcaact aaagctgcga aagcaacttt gtcaaatact
    15061 gcgatgtcag ctaagatctt acggtcgatt tcaacagatg cttttttcaa gccgttgatg
    15121 aatttgctgt aagataaacc gttttgacga gctgctgcgt taatacgagc aatccataat
    15181 tgacggaatt gacgtttacg ttgacggcgg tcacggtaag catattgagc agctttaact
    15241 actgcttgga aagcaacgcg atacacgcgt gaacgtgcac cataataacc tttagcagcc
    15301 ttaagaactt tcttatggcg tgctcttgca ataacaccac gttttacacg agccattatt
    15361 taatctccta attgtctatt ttgattggtg gtcgtcatca cgacctttac taagaattct
    15421 atccgtacgt ccgtacttta ctacactacg ctaacctaaa aggcttatgc gtatggtaag
    15481 cacgctacta ctaaaacttg gtcagctttc gctaccattg atttgtgacg taattgacgt
    15541 ttacgtttag tggttttctt agtcaaaatg tgacgtaagt gagattgttt acgtttaaaa
    15601 ccgccggaag ctgttttttt gaaacgctta gcagcaccac gtactgtttt aattttaggc
    15661 attgttaaaa aactccgcat tgtttgttag atattatgaa aataaggcga attttgtgaa
    15721 caaaattact tggaagcact tattctccgc tatacgattt tcatcgttaa aaagtcaagc
    15781 aggctgctga gtttgcctgt tgagcatttt ctctttcttg gctaggcaaa aaagcttgcg
    15841 aattttagcg aaaatataac cgctatgcaa gccaatttaa gctttatcaa gaaaaaagca
    15901 cattaaaaca atgtgcttat cgaaattatt tcttcttagg tgcgatcacc atcacaactt
    15961 ggcgaccttc caatttgcct ggggctgact ctaccattgc aatttctgca gtatctgctt
    16021 tgacacgttc taaaacgtcc ataccgattt cttggtgagc catttcacga ccacggaaac
    16081 gcactgtgat ttttacttta tccccatctt ctaagaaacg gataatgcta cgaagtttaa
    16141 cttgataatc gccatcatca gttcccggac ggaatttgat ctctttaact tgaacaactt
    16201 tttgtttttt cttttgttct tttgctgctt tctctttttc gtagatgaac ttaccatagt
    16261 tcataatacg acaaactggt ggttcagcat ttgggctgat ttccactaaa tccaattcag
    16321 cttcttctgc tctatttaga gcatcttgaa gtgatacaat accaacttgt tcgccgtttt
    16381 catcggttaa gcgaacttct tttacgccac gaatttcgtc attaagacga tgtgcacgat
    16441 ttgattgaac acgttttaca ggtttaatag ccttattcct tctagtaaat ttttgcttaa
    16501 attttaccgc ttgagagcgt ataaatattt tagattgctt gttttaagtg attaaaaaac
    16561 agctaaacgt gcggattcta taagattttc agtgcttatg caataataaa gcccttattt
    16621 aactgcctat tttcggttat tttgatattc tttgattaaa ctcataaatg cttgcccaaa
    16681 tcgttcaaat tttcgttcac caacaccatt aatttctaac atttccactt ttgaagtcgg
    16741 gagaaattct gccatttctt gcaaggtggc atcgttaaag acgatataag gtggaatatt
    16801 ttcgaggtca gctatctgct tgcgtaaaaa acgtaagcgt gcgaataggt ctttgtcata
    16861 gcgatgactt gcttgttttt gcacaaatgc agtcgcagat atacctaaac gtggcaatgc
    16921 aagctgaagt tgcttttctc cacgcaaaaa tggtctggca ctttcggtta attgcagagc
    16981 ggaatggtta gcaatatttt gaataatcaa ccctaaatga atcagttgcc gcaccacatt
    17041 ttgccaataa tgttggcttt gttcttttcc gataccataa acggaaagtt gatcgtgttg
    17101 atgttcacga attttgagat tgttcattcc tcgcaatacc gcaataatat ggtgctgacc
    17161 gaaaatttga ccggtgcggt aaatcaccga catcactttt tgggcatcaa gtaagccatc
    17221 gtattgttgc ggtggatcta aacaaatatc gcagtttttg cattgctctt ggcgatgttc
    17281 cccaaagtag ttgagtaaga ctaaacggcg gcaagtctgt gattcggcga aatcgccaat
    17341 tgcctgtaat ttatgctgtt taatatttct ctgttcgctt tccggctctt ccaataatat
    17401 tttttgtaac caagcataat cgctaggatc ataaaaaagc acggcttcag aagggagatc
    17461 atctcgcccg gctcgtccgg tttcttgata gtaagattcg atagagcgag gtaaatcgaa
    17521 atgtaccaca aaacgtacgt tggatttgtt gatccccata ccaaacgcaa tagtggcaac
    17581 cacaatttga atatcatcac gctgaaaggc attctgcact cgttctctct gttcaaaact
    17641 cataccggcg tgatagccca tcacgctgat tttacgggct gagagtttct cggtgatttc
    17701 ttccactttt ttgcgactgt tgcagtaaac aataccgctt ttgccttgct gtttgctgat
    17761 gaatttaatg agctgttcaa gcggtttaaa tttttcctgc acggtgtagc gaatattggg
    17821 gcgatcaaag ctgcctaaat agatatgtgg gctatttaag cgtaaatgat gcagaatatc
    17881 ggagcgggtt gttagatctg ccgtggcggt gagtgccatc aacggcacat tcgggaaagt
    17941 gtttcgtaag ccacctagca gggtatattc agggcggaaa tcgtgccccc attgggaaac
    18001 acaatgggct tcatcaaccg caataaagct gattttacat agcgaaataa agtggaaaaa
    18061 gccttgagtc attacctttt caggggaaag atagagtaat tttaattgac cggataaggc
    18121 tttttgttcc acaagttgct gctcttcgag cgtttgagtg gagttaagat aagctgcttc
    18181 aatgccgttg gtgataagtt gatccacctg gtctttcatc aacgaaataa gcggcgaaat
    18241 caccaaagtg atgccgtcta ggcacaaagc cggcacttgg tagcaaaggg atttgccacc
    18301 gcctgttgtc ataatcacga ggcaatcacg attttccaac acggcattga taacttcttc
    18361 ttgcccgtct cggaattttt gatagccaaa aatattattt aaaacagaaa ttgcggtggt
    18421 gttcattggt agttggttgc tacttatgat agtactcgtc ttctgagagt atcttttaaa
    18481 atgaaaataa agcactcatc aaagacgagt gctgtcttag ttaacaatta ggcattagaa
    18541 agaaacgctt tctccgtgtc gagcaaaagc ttcttctaaa tgttgccaga acgagcgacc
    18601 ttcatctgtt acccattcgc cttctacatt tttaaagtgg aaaccaccca atttgctggc
    18661 aagccataat tccagcattg cctcttgttt attaatgata acttgcgatt catcatcaaa
    18721 ggttaaggtg cagaccgctc cttggatttc agtatcgact gataatcctt cgtcataaat
    18781 tttttcttca atttgttgcc atacttgctc tacggcttgg tggaattgtg ctgtgttcat
    18841 tggtgtatcc ttatttgaat gttatataag tagtaaatac tttttgtttt agctgtttaa
    18901 atggtctgta aagttctttt tgtatttttg ttaagaaata attaggcttt ttaagtttag
    18961 cttgattttt tatttta
//
LOCUS       DANMGB010000035        18553 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.035, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000035 DANMGB010000000
VERSION     DANMGB010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18553
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.035"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            143..1561
                     /gene="leuC"
                     /locus_tag="PXG19_000890"
     CDS             143..1561
                     /gene="leuC"
                     /locus_tag="PXG19_000890"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL6066210.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1574..2176
                     /gene="leuD"
                     /locus_tag="PXG19_000891"
     CDS             1574..2176
                     /gene="leuD"
                     /locus_tag="PXG19_000891"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL6066211.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2248..2712)
                     /locus_tag="PXG19_000892"
     CDS             complement(2248..2712)
                     /locus_tag="PXG19_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066212.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2736..3242)
                     /locus_tag="PXG19_000893"
     CDS             complement(2736..3242)
                     /locus_tag="PXG19_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066213.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3265..4242)
                     /gene="dusA"
                     /locus_tag="PXG19_000894"
     CDS             complement(3265..4242)
                     /gene="dusA"
                     /locus_tag="PXG19_000894"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL6066214.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
     gene            4593..5570
                     /locus_tag="PXG19_000895"
     CDS             4593..5570
                     /locus_tag="PXG19_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6066215.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            5557..7224
                     /locus_tag="PXG19_000896"
     CDS             5557..7224
                     /locus_tag="PXG19_000896"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6066216.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            7228..7647
                     /locus_tag="PXG19_000897"
     CDS             7228..7647
                     /locus_tag="PXG19_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066217.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(7882..8643)
                     /gene="nudC"
                     /locus_tag="PXG19_000898"
     CDS             complement(7882..8643)
                     /gene="nudC"
                     /locus_tag="PXG19_000898"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL6066218.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(8636..9319)
                     /locus_tag="PXG19_000899"
     CDS             complement(8636..9319)
                     /locus_tag="PXG19_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL6066219.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(9316..10164)
                     /locus_tag="PXG19_000900"
     CDS             complement(9316..10164)
                     /locus_tag="PXG19_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6066220.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(10164..10649)
                     /locus_tag="PXG19_000901"
     CDS             complement(10164..10649)
                     /locus_tag="PXG19_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL6066221.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(10651..11973)
                     /gene="pepQ"
                     /locus_tag="PXG19_000902"
     CDS             complement(10651..11973)
                     /gene="pepQ"
                     /locus_tag="PXG19_000902"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL6066222.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            11984..12226
                     /gene="tusA"
                     /locus_tag="PXG19_000903"
     CDS             11984..12226
                     /gene="tusA"
                     /locus_tag="PXG19_000903"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL6066223.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(12293..12724)
                     /gene="rraB"
                     /locus_tag="PXG19_000904"
     CDS             complement(12293..12724)
                     /gene="rraB"
                     /locus_tag="PXG19_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL6066224.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(12739..13350)
                     /locus_tag="PXG19_000905"
     CDS             complement(12739..13350)
                     /locus_tag="PXG19_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL6066225.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(13352..13768)
                     /locus_tag="PXG19_000906"
     CDS             complement(13352..13768)
                     /locus_tag="PXG19_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL6066226.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(13772..14602)
                     /locus_tag="PXG19_000907"
     CDS             complement(13772..14602)
                     /locus_tag="PXG19_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL6066227.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(14939..15054)
                     /gene="rrf"
                     /locus_tag="PXG19_000908"
     rRNA            complement(14939..15054)
                     /gene="rrf"
                     /locus_tag="PXG19_000908"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(15216..18114)
                     /locus_tag="PXG19_000909"
     rRNA            complement(15216..18114)
                     /locus_tag="PXG19_000909"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(18357..18432)
                     /locus_tag="PXG19_000910"
     tRNA            complement(18357..18432)
                     /locus_tag="PXG19_000910"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18396..18398),aa:Glu,seq:ttc)
BASE COUNT         5483 a         4268 c         3589 g         5213 t
ORIGIN      
        1 ttatttagca taaaaatact gttttacttt cattttttta atcgttatat tcactccata
       61 tcagcaagcg gtcatttttg caaaattttt tgcaaattta accgcttgta ttaaaagtta
      121 cccttttgag ttggaacatt ttatgcaaca agccaaaacc ctatatcaaa aactattcga
      181 ctcacacgtt gtgtatgaag ccgaaggcga aacgccgatt atttatatta accgccactt
      241 aattcacgaa gttaccagcc cgcaagcgtt tgacggcttg cgtgttgccg gtcgccaagt
      301 tcgccaagtc agtaaaacct tcggcacaat ggaccacagt atttcaaccc aagtgcgtga
      361 tgtacagcaa cttgaagggc aagcgaaaat tcaagtatta gaattagaaa aaaactgcga
      421 agaaaccggt atcccactgt ttgacatcac taaaaaacaa caaggtatcg ttcacgtaat
      481 ggggccggag caaggcttaa ctttacccgg tatgaccatt gtatgtggtg actcgcacac
      541 cgccactcac ggggcctttg gtgcgttagc cttcggtatc ggtacttccg aagtggaaca
      601 cgttttagcc acccaaacct taaaacaggc ccgtgcaaaa agtatgaaag tggaagtccg
      661 tggcaaagta aacccgggca ttaccgcaaa agatattgtg cttgcgatca tcggtaaaac
      721 aactatggct ggcggtacag gctatgtagt ggaattttgt ggcgaagcaa ttcgtgatct
      781 ttcaatggaa gggcgaatga cagtgtgtaa tatggcgatt gagtttggtg cgaaagccgg
      841 tattgttgcc ccggatgaaa ccacgttcgc ttacttgaaa gaccgcccaa atgcaccaaa
      901 aggtcaagat tgggaagatg ccattgaata ttggaaaacc ctcaaagccg atgagggtgc
      961 agtttacgat gcggaagtga tcttagaagc aaaagacatt gctccacaag tgacttgggg
     1021 aaccaacccg gggcaggtga tcggtattga tgatgtaatt ccaaatccgg aagatatggc
     1081 cgatcctgtt actcgtgcct ctgcggaaaa agccttagct tacatcggct tagaagccca
     1141 tacagatatg aaagatgtac cggttgatca agtctttatt ggttcttgta ctaatgctcg
     1201 tattgaagat ttgcgtgctg cggcagcagt aatgaaaggg cgtaaaaaag ccgacaatgt
     1261 aaaacgtatt ctcgttgtgc caggttcagg tttggtaaaa gagcaagcag aaaaagaggg
     1321 cttggataaa atcttcattg aagccggtgc agaatggcgt aacccgggtt gctcaatgtg
     1381 tttgggaatg aacgatgacc gcttgggcga atgggaacgt tgtgcctcta cgtctaaccg
     1441 taactttgag ggcagacaag gacgtaacgg tcgtacccac ttagtcagcc cggcaatggc
     1501 ggctgcggcg gcggtgttcg gtaaatttat ggatattcgc aaagtgtcat taaacgcata
     1561 ataggaggaa aaaatggcag gtattaaaca acattcaggc ttggtcgttc ctcttgatgc
     1621 agcgaacgta gacaccgatg caatcattcc aaaacaattt ttgcaagcca ttactcgagt
     1681 cggctttggt aagcaccttt tccacgaatg gcgttattta gatgcggaag agactcaaat
     1741 caaccccgat ttcgtactga acttcccaca atatcaaggt gcaaccattt tactcgcccg
     1801 taaaaattta ggctgtggct cttctcgtga gcacgcccct tgggcattgg cagattacgg
     1861 ttttaaagta atgatcgccc caagttttgc ggatattttc tacaataaca gcttaaataa
     1921 ccatatgttg ccgattaaat taaccgaaga ggaagtcgaa gagatcttcc aatgggtgtg
     1981 ggcaaatgaa ggaaaacaga tccacgttga tttagaagcg atgactgtga ctgttggcga
     2041 gaaagtttat acctttgagt tagacgaatt ccgccgccac tgcttattaa acggtttgga
     2101 taatatcggc ttaaccctac aacacgaagc tgcgattgct gcttatgaga aaaacattcc
     2161 ggcattttta cgctaattaa aatacaaaaa aacggctaac atctttaagg cgttagtcgt
     2221 tttcttttta gccattttct ttggcaatta gccttctcgg cactctaacc aaggcacatt
     2281 atttttgtaa taagttgaag taaactctcg tgccactaac tctacaaaac tgccttcaat
     2341 cggctgataa gaacgataac gcacttcaaa ttttgttgct cttgcattca aactgatgtt
     2401 ggcaagatgg tcgaacggat aaacctttcc gccatcaagt tgaaaataga taccaaaatt
     2461 ctcttgctta cggctttcag accaaagtgg aaaataggtt gccaaatatg aactgctgcc
     2521 tgttgcaaaa ttcttacaat aatagctata acgcttaaaa tctttcggat tattcaattc
     2581 cgcttggctg atattctgtt tcaaatatcc aacctgtgct tgttgcttag ttgagtttga
     2641 ttgtggtgag ggcgtacaag caaataagcc aattgccact gttgccatta aagcaatttt
     2701 gaatttattc ataaaaatcc cgataaaata ttaaattaaa tctgatattt gcttttatcg
     2761 ccaatatcaa aatgcagcgg cattcgccat ttttgaatac tcagcacaag aagcaacaag
     2821 ccacagacaa ggcttaaaat ttgcaccaat aaagaccatt ctagtgcaaa agcaatccac
     2881 aataccgcca ctaaaagcgg ttggaaattt aagccgaata ctctaaaaca gaaatattct
     2941 ttatagctta atccgccgat caccagtagc attgccccga acgcaagcaa agggaaatta
     3001 aacacagcac caagtaagcc aatccaaaca gaaaattgga aaatcaggcg aaacgatttg
     3061 gcataaagat gcaaagaaga tgccaacatt gtgccagata ctaataaacc atattgtgcc
     3121 gtttgcggat aataaggcaa taaaagcaac atcaatgtag ctaacacaaa accgctgcgg
     3181 taaatgatga cggttaaata atcccaaaaa tccattggcg attgaatatg tggatctgcc
     3241 ataactgcct ccttaaacaa taaattagcc aataaacgca agggcttgtt ccactacttc
     3301 tacaccggct cccgacttag tggcattttc acttaaatga cgacgccact gcctcgctcc
     3361 tttgcaatgt tgaaacgcac caagcatatg gcgaacgata tgatttaaat agacaccttt
     3421 ggcaagctca cgttcaatat aagggaacat cttttccacc gcttcttttg ccgttacaag
     3481 cggtcgattt tcattaaaaa tttgcgaatc gatctcgcct agcattgacg ggttttgata
     3541 ggcctcacgc cctaccatta ccccatcaac aaactgcaaa tgctgtttaa tttcctcaat
     3601 ggttttaatg ccgccattga tgctaatctt taaatgcgga aaatctcgct tgagctgata
     3661 aacccgatca taatctaaag gcggaatttc acggttttcc ttcgggctta accctgtcag
     3721 ccacgccttg cgggcgtgta cgataaaatc attgctataa ggttgcactt tttcgataaa
     3781 atcacacaaa aattcatagc tgtctaaatc atcaatccca atacgatgtt taaccgtgac
     3841 cggaatttcc accgcatctt gcattgcttt aatacaatcc gccactaaat ctgcttttgc
     3901 catcaaacaa gccccaaaca taccgttttg cactcggtct gacgggcaac cgacatttag
     3961 attaatctcg gcatagcctc gctctgccac caatttggca caatgagcca actgtgccgg
     4021 gtcgcttcca cccagttgca aagccaccgg attctcgctc ggatcatatt ccaacaaatc
     4081 atatttggcg tgaataatcg ccggggcggt gatcatttcg gtataaagca aggcttgacg
     4141 actaaattgg cgatgaaaat agcggcagtg acgggttgtc caatctaaca ttggagcaac
     4201 cgaaaaacgt ccacggtaaa aaggttgaat ttcgttagtc ataaaaatat caaaataaag
     4261 cggtaaaaaa tcagtaaaaa ataaccgctt gtaagcgatt caaaacaagc agccatcata
     4321 ctcgaaaaag ccagataaac atagtttcct caaggcttcc ccatctatct gcgcactttt
     4381 aaaacaacct taaaacacaa tatatagtgt ttcaacatca aatcacacac aacatattga
     4441 agcaaaaatt tacaaaatta tttttcttta taaatcaata agctaccaaa gaccaataaa
     4501 aaagagtgtt tgtcaagact tgtcttgaaa ctttttttgc atacaatcat ctaccagttc
     4561 caaacataaa ctttaagata gagcctacga atatgtctag aaacctcttc caaaaacgct
     4621 taaatattaa gccgtatgag tatcctgagc ttcttgaatt taaagatgca attcgccatt
     4681 cttactggtt acacaccgaa tttaacttca ccggcgatat tcaagactat cgcaccacca
     4741 ttaacgatca cgaacgtcac gtgttaaccc gagcaatgct tgcgatttca caagtagaag
     4801 tgaatgtaaa acgtttctgg ggcgagctat actgctattt cccaaaaccg gagatggacg
     4861 atgtaggcgg tacttttgct gaaagtgaag ttcgccataa agatgcttac tcgttcctat
     4921 tggaaaaatt aggcctaaat gaaatgttca gtcaaattca tgaaattgaa ccattaatga
     4981 accgcattcg ttatatggaa agttttatga aagataaaga tgctggcaaa ggcgaatttg
     5041 ttttatcgtt agtgctgttc tctttatttg ttgagcatat ttcattgttt ggacagttta
     5101 ttatcatgat gtcgttcaac aagcataaaa acctgtttaa agggatttcc aatgcggttg
     5161 aagccacctc aaaagaggaa gaaattcacg gtaaattcgg aattgcgtta tacgaaattt
     5221 tacgtgacga acacagtgaa ctattcacac cagaattttt tgaagatttg caaaccttgg
     5281 caaatcaagc gtttgaagca gaacgtggca tcttagactg gattttcgaa gaaggtgatt
     5341 taagctttat caccaaagcg acggtagaaa attacattaa aaaccgttac aacaattctt
     5401 taagcatttt agggttagag ccgccacacg acatcgaccc tgaattatta aaagagactg
     5461 agtggtttga tattgaaatt ctttcaacca aagaaaccga tttctttaac aaacgtagca
     5521 ccgattattc taaaaaaatg aaacagatta ccgcagatga cttattttaa tacagaccgc
     5581 ccggacttcc actggcttaa tgaagacagc cgtttattct tacaacgtgg ctatttattg
     5641 gaaggaacaa ccgcattaga ccgcattcgt tttattgccg aacacgcaga gcgaaaactc
     5701 ggcattgaag gctatgccga taaattctat cactatatgg caagaggcta cttctcgctt
     5761 tcttcgccaa tttggtcaaa ctttggctta gatcgtggct taccgatttc ttgtttcggt
     5821 agctacatcg gcgactctat ccatgaaatt atggtgacta ccgctgaagt gggcatgatg
     5881 agtaaaattg gcggtggtac ttcggcctac tttggcgata ttcgtccgcg tggctcgtta
     5941 attaaaaaca acggtaaatc agacggctca tttaacttca gtaaattatt tgacactgtg
     6001 attgacgtga tttcacaagg aacatcacgc aaaggtcagt ttgccggtta tattgatatt
     6061 gagcacggcg atattgacga atggctggat attcacaccg aaggcaaccc aattcaatta
     6121 atgtattacg gtgtgtgtgt cggtcacgat tggttagagt caatgaaagc cggcgatcca
     6181 tacaaacgtc agctttgggc aaaattgtta caacgtaaaa ccgaaaccgg tatcccttat
     6241 ttattcttta aagacaatgc caacgcaggt cgtcctgatg tatataaaga taaaaatatg
     6301 acgattcacg cctctaactt atgtactgaa attatgttgc cttccagcaa cgaagaaagt
     6361 ttcgtatgct gtttatcgtc tatgaaccta ctctactttg atgagtggaa agataccgat
     6421 gcaccagaaa cattaaccta tttcctcgat gttgtaatga gtgaatttat tgagaaaagt
     6481 caatcaattc cattcttaga ccgtgcaaac cgctttgccc gtcgccatcg tgcattaggt
     6541 ttaggcgtgt tgggctggca cagctatcta caggcaaata atattgcctt tgacagcttc
     6601 caagcgatgc aaaaaaacaa cgagattttc aaaacgcttc aagcaaaaac cttgaaagcc
     6661 tcgcaagaat tggctcaacg cttcggcgag ccggaaattt tagagggcta tggtcgccgt
     6721 aatactacat taatgagtat tgctccgact aaatccagta gctttatttt aggcagtgtg
     6781 tcgccatcgg tagagccgtt taaatccaac tactatgtaa aagatttagc gaagatcaaa
     6841 accgtgtata aaaacccgtt cttagagaaa ttactccaag aaaaagggct agacaccgaa
     6901 gaaatttgga cgtctatttt acaaaatgat ggctcggttc agcatttgga acagctttcc
     6961 gagcacgaaa aagaagtatt taaaaccttt gccgaaatca gccaattaag cgtgattcag
     7021 caagctgctc aacgtcaaaa atatattgac caagggcaaa gtattaatgt gatgatccac
     7081 ccagccacac cggctcgtga tcttaaccaa ttatacttaa cagcagaaga gctgggctta
     7141 aaatccatct actaccaaaa ctcaatgagt gcagcacagg tatttaaccg taacctatta
     7201 agctgctcaa gttgcgaagg gtaaataatg ggaaatttat cgcatacttc acctaatact
     7261 attgttgaag ttgttggtga atttcctgaa ataacatcta gtgggtatac ctttgataaa
     7321 ggtcctattc aattaagaat cggcaaacat actgctccaa ataaaggctt tggtgtaaag
     7381 catattgaag ccgagcatat gcaagaaatt cttaatctag gatttacatc agttaatgaa
     7441 tttgtcaaag ctatcatagt agaaaacgct aaaatttttt gcgaattctc agatttaaaa
     7501 ggcaatcatc gccctattat tctgaaagca agtattggca ttgtggttct agagcgtaag
     7561 tttttggaaa gcggtacgat atattcagtt gtaaccgctt atagaagaac aaatcctcac
     7621 ggaatacaaa taggcactat gaaataaagt acgttagtgt tataatcagt tccacgcaag
     7681 agcatttgta gaaaataaca ggcggatttg gttttctact gtgggcggca ggtttccgct
     7741 aacctgtaat agctatttaa tttttatatt aaatcctgaa cttgaaacag actaagggat
     7801 tgctgcggta gctaagaata caaacctctc tataatcata tagagaggtt ttttcttatt
     7861 gatgagcaca agttaagata attatttact ctcccgacat aacttcaagg tagcttgaat
     7921 cagctcaaaa gctattgtgc cttgttgtgg gatttcaggt aagctttcct cacagtcgaa
     7981 ccattttgca tcgcagattt cttcttcctg tagctgaatt tcaccgcttt cataatccgc
     8041 taaaaaacct agcattaatg aattgggaaa cgcccaaggt tggcttccaa aataacgcac
     8101 atttttcact ttaatgcccg tttcttcaaa cacttcacga tgcaccgcag tttctaccgc
     8161 ctcaccggct tcgacaaaac cggctaaagt ggtataaatt gtgcctttat ggcgtagatg
     8221 attggctagt aggatttgtc tgccttttcg caccgccaca ataattgacg ggctaatcgt
     8281 tgggtaagct cgattgccac acgcattgca gtaaattgca atttcatcgc ttgccagtat
     8341 ggttttctcg ccacattttc cgcaaaattg gtgagtctga aagaaatggt taagcgaaac
     8401 agctcgatgc aacaaatgag acagttcggg tggtcggtta atttggcttc ttaaataagc
     8461 aaactctcgc tgattatccg attctaacgc cttcaccaaa taagccggcg agccttgata
     8521 ttgcccgatg gttaatttct cacgtccact taagcccagc tcttccgcac ttccgaatgg
     8581 aatttcccca gcctccaagg caatatcaaa atcgctgacg ataatccaat atcctttatt
     8641 catctttcaa tcctaattgt gtaaacaact tacgtttttc attttcagat agcacttgaa
     8701 actcaccaca gcctaaattg cctaatctaa actggcctat cccaacacga attaaccgta
     8761 aagtcgggaa accgatatgt gcagtcattc ttctgacttg gcgatttttc ccttcagaaa
     8821 taatcaattc tatccagctg gtcggaatgg ttttccgctc acgaatttgc ggggcgatat
     8881 tccaagcaaa atcgggcgtt gctattgctc tgactttcgc gggcttggtc aaaccatctt
     8941 ttaactccac cccttttgct aatttggcaa gatcttccgg ttgtggaaca ccctccactt
     9001 gtacccaata ggttttctgc ttgtcaaatt tcgggtgagc taaacggtgc tggatttcgc
     9061 cattattagt caaaagcaac aatccttcac tgtctctatc tagccgcccg accgggtaaa
     9121 tattgggcat cgtaataaaa tcttttagcg tttttcgccc ctgttcatcg gtaaattggg
     9181 ttagtacatc ataaggctta ttgagtaaca caagggtggt ttccgcaaag gtaagcggtc
     9241 gtttttgcgg atttttttgc aaatttttag cgaaatttga ccgcttgttt gtcattcttt
     9301 taaaggttgg ttgtttcatt ttttcaggtt cgcccacgca acagaaagta aaataattaa
     9361 gccaccgata atcattttaa gggttggcac ttcattaaag caaagccacg cgatcacaat
     9421 cgcatacacc ggctcgaggg aaataatcat tgaggcagta cgggcgttga tggtatcaag
     9481 gcttgaaata aacagcgtat aggcaagggt tgtacataaa aaaccgatac agaaaatcca
     9541 aaaccaatct tgggtggaaa cgcttggaaa ttcagtgatg gagagaggca acagaaaaag
     9601 tgtagcaaaa atatactgcc accagcttgc ttgcacaccg gaaattttgc tcatggtacg
     9661 gcgattcgct accgccaaaa taccatacac caaagcagat aacacgcccc acaataaacc
     9721 ttgagtggct tgattaccaa aagtaaattc aggggtaact aaaattaaac caaccgtgat
     9781 ggcaattaat agcaccactt cacgaaagcg taatttttca cggaagaaca ggctttcaaa
     9841 taacgccaca aatgccggaa agctggcaaa gcctaaggtt gctaccgcca caccacctac
     9901 tttaaccgcc acaaaaaaag taacccagtg ggcagctaat aaagctgcag aaaatgcaag
     9961 ttgagccatt tgctgtaagt tgagctttac aagcggttgt tttttccata aaaaatacaa
    10021 agagatgata gcaaaagcaa tcatcactcg cccaagcaca atggtttcag ccgagctttg
    10081 aattaatgct ccgaagatcc ccgaggcacc aaataaaacc gctgtgccgt gtactttaag
    10141 tagtgcaagt gttcttttct ccactatttg atcctattat gttgatcttg ctcgtccggc
    10201 ttgcgttcaa attctgcatc aaacgtgttg ctatcttgcg cagatgtaac agaaaaagac
    10261 gaagtttggg cggtaaaatg cataaacacc ttattcttta cgctattaat tacgaaggct
    10321 tgaatccatt ttcggctaaa gggtaacacg cataaaatcg ctaaaatatc acttaaaaag
    10381 ccgggaataa tcagcaaaat gccggctaca ataaacatca ccgagttgcc gactgcttca
    10441 gtcggtatct tgccttggct taaatcttgc ttgatggaaa agagggtata aacgcccctt
    10501 aacttcacaa tccataaccc taaaaatgaa atcacgacca gtaacaaaat cgtgggtaac
    10561 acgccaatga tcgagccaat attcaccagc agcgaaattt cgcaatagat ataaaagaaa
    10621 ataccaaaca gaatcgctaa aataggcata ttatcctccc aacgttgcgg cagcgtttgc
    10681 cgtcagattt tctgccccat tggctcgcat gacaatattg tcttcggtac gaatcccgcc
    10741 aaaggctttg aaagcctcaa ttttctgcca gttaaaggca gaagataagg cactgttttt
    10801 ccaaggctta agtagcatct caataaaata aaaacccggc tcaatggtaa gcaccatatt
    10861 ttcctgtagc tcacgggtac aacgcaaact tgggtaaacc tctggaggag ctttatggct
    10921 gcctcgggca ttttgctgaa aaccgcccac atcgtgcact tgaataccca ataaatgccc
    10981 tagtccgtgt gggaagaacg tacggctaat cccttgttca aaaatttgct cggctgaaag
    11041 atgaataaat tgatgttccg ctaataattg cgaaatcatc tgctgcattc gggtgtgata
    11101 atgcaggtag ttcaccccaa tactcagctc agcaataatc tgcaacttca actgttccat
    11161 tttcgccacc agctcggcaa attcagaacc gctgtcaaag gcataggtgc gggtgagatc
    11221 ggaggcataa ccatttaccg ttgtgccggc atcaattaaa aaactgtggc gttttgcgtg
    11281 ggtgtcaaaa tctaacgccg tataatgtag caccgcacca ttttgattaa tcgccacaat
    11341 attgccataa ggaacattga gatcagattg ctgcgtcgct ttcaaatatt caaggttgat
    11401 ttcaaattcg cttttgccgg caaaaaatgc ctcttttgct acttgatgcc cttttaaggc
    11461 tgaaaattgg gcttggtaaa tactttcaat ttcaaactcc gttttgatgg agcgggcaaa
    11521 attcaggcta ttcagcactt tctgcggatt aatatggcta aagcctaact ttttggctag
    11581 ctcaacatct tcaccgataa aggcacaagc ggtcggattt tggataaagg ttgcaatttc
    11641 attctctgct ctcaacaaaa cccactcaaa ttccgcagcg aaaaaggcct ccgttggcac
    11701 ttttagagtg gaaacccaat aatcttcagg ggcataaaaa tagattttcg gcttattttt
    11761 gccatctaaa aataaccagc aattttcagc ttggggatat gggaaaaagt aattaaaata
    11821 agggttaatt ttaaacgggg cggtttgatc gtctaaaaat aaggtttttg ccttgccggc
    11881 ataaatccat aaaccgtcta aaaaggcatt ttccagcaag ctttgcactg tctgttgcaa
    11941 acgtgcgaga tgcgtagaga atagattttt cataaggaat aaaatgactc aattaactgt
    12001 aaataaagaa ttagatacct tggggctacg ttgcccagag ccggtgatgc tcacccgtaa
    12061 aacaatccgt aatatggaag agggagaaat tttgcatatc atcgccgatg acccggccac
    12121 tacccgtgat attccgagtt tctgcgaatt tatggatcac caattaattc aaaaagaggt
    12181 ggactccacc ccataccatt actggattaa aaaaggcttg gaataaacca caagcggtcg
    12241 attttagcca taaaattgca aatttatgca caaaatcgac cgcttgtttt aattaatgac
    12301 ggcgaggttc gtcctcaaaa tcgtcatttt catcatcgaa aaattcaccg tcatcgccgt
    12361 actcatcttc atcagcattc ggatcttcaa agtaggttcc ccagccctca tactccgcac
    12421 cggctttttc aattaatggc agtaactctt tttgttgtgc ggtaatgaga tccgcattca
    12481 agtgaatttc gctcacaatg tcgcatacaa aaatcacttt accattttcg tcttccactt
    12541 cttccgcttc ggaaatttca tagcccagct tataggcatc aactactaat ttttccaatt
    12601 tatcaaaatc gtggtgggca acgtggtgtt caataatata aagggcttca gggtctgaac
    12661 catcggctaa taatgatgaa atggtttcat cggtttctgt gcgtaattca tcgagattgt
    12721 acatattgaa ttccttactt attctgtgat taattttggt gcaaaccagc tatctaattt
    12781 gttcgacagc ttatcaatac cgattttatt cagtgcggaa taagcctcta cttggatatc
    12841 accttggaat ggtaaaatcg cttctcttac catttttacc tgcttagagc gtgccgattg
    12901 gcttaactta tccgctttgg tcaacagcag taacaccggc aagttggctg acactgccca
    12961 ttcaatcatc tgttgatcta aatctttcaa cgggtggcga atatccatta aaatcaccac
    13021 accgcctaaa cattcacgct tttgtaaata ctcgcctaat gctttttgcc actggatttt
    13081 catctgttca ggtactgctg catagccata gccaggtaaa tccactaatt tacaattcgt
    13141 ttcaacctta aacaagttaa tcaactgcgt tcgccccggt gttttggaag ttcgggctaa
    13201 acttttttgg ttagttaaag cgttcaaagc agtcgattta ccggcatttg aacgcccggc
    13261 aaaagcaatc tccacacctg tatcttcagg taaatgacga atatccggtg ctgaagttaa
    13321 aaaatgggtt ttatgatagt ttaatttcat tttattctct aaatttaaaa gataagcctt
    13381 gctcgccata ttgattcggt tcaggattac cggcaaatac accccattct aaaaagagca
    13441 acattccaat aaatgccggc atcacctgtc caagcaatat ctgcataatt ccttgtgaat
    13501 aaggagctgc aagataacaa ataatcggca ctaatgccat taacagggct tttgccgaac
    13561 gatttcggtc gtgtaatcgt ttaataataa tagcagacag gctaaatcct gtaattataa
    13621 gcggtagcac actcaataaa gacaattcag ccaaatttat ccacatagca accataaaca
    13681 ggaaaagaaa gtggattcca aatccaatcc aaaaacctcg tctatttagc ctaccgttaa
    13741 aactaaaaag tgctttatac caactcattt tctaccctaa agctacatca agtaccatca
    13801 ttactacaaa gcctaacatc aggcttaaag tcgcaatatc agtatttccc gaactttgcg
    13861 attccggaat cagttcttct acgaccacaa aaatcatcgc tccggcagca aaggcaagag
    13921 cataaggtaa aatagccgtc atcgacagca caaaaaccgc cccaatcacc gccgcaatag
    13981 gctcaaccac tgctgacata gagccatacc aaaatgcttt cttccgacta tgcccttcgc
    14041 ctcgaattgg caatacaagt gacgagcctt cgggaatgtt ttgtaaccct attccgattg
    14101 ccaaaccgat agctcccata atggaagcat ctacgcctga aacttgggtt gccaaagcac
    14161 cgaaagccac ccctatggct aatccttctg gaatattatg aatggtaatc gcaagaaaaa
    14221 gcaaagtaga ttttgataag ccttgtttaa gttgatcatt tccttcagct tgctcaatcg
    14281 gcttactcaa gtgcaaatgc ggcacaacat agtcaattaa tcgaataaaa gctccaccgg
    14341 caagaaagcc aatcgctgca ggcagccaag ctaaagagcc ataatccgcc tcggcatatt
    14401 ctaaagaagg tgcaagcaaa gaccaaaacg aggctgcaat cattacacct gcggcaaagc
    14461 ccatcatact gtctaataat tttcgattaa ccgatttaaa aaaatagaca aatgacgaac
    14521 cgaaaatcgt acaaccccaa gtaaataaac ccgctaaaaa agcttgccat attggagaaa
    14581 gtgaaaggaa atattcaaac aagaaatagt accagctaaa ataaatattg gctcattcta
    14641 tcaaagattc agggttatta atatagtgta gccaaaggct caacgaagat ttcacttgta
    14701 aaacttagca agaaaataac cgcttgcatt tccctttcat aaatacaatg aaaatcctaa
    14761 caagcggtca ttttccgtga gttttttacc tttaccacaa caacaaaaaa ccgcctgtat
    14821 ctctacaggc ggctctttct tggattactt gtactttgtt tatttgtact tattttgctt
    14881 ttgcttaagt tttcgctttt gtaactttta gctttcgctt aagctcgctt aaattaaaac
    14941 ccgacgatgc tctactctca catggcgaat caccacacta ccatcgacgt tactgcgttt
    15001 tacttctgag ttcggtatgg ggtcaggtag gaccacagca ctcttgtcgt cgggaaaatt
    15061 cttttctatt tttgaatttc tttaagttaa cttcctaatc taactcttag ttcactttaa
    15121 tagttagatt aacttcctta acttcgattg atttcttctc tagtttcgtt cttcttctca
    15181 atacaaaaac aagcctaaaa acatttgagc gttgtatagt taagcctctc gggcaattag
    15241 tactggttag ctcaatgtct cacaacactt acacacccag cctatctacg tcgtagtctc
    15301 caacaaccct tacacactta tagtgtggga gaactcatct cgaggcaagt ttcgtgctta
    15361 gatgctttca gcacttatct cttccgcatg tagctaccca gcaatgcctc tggcgagaca
    15421 actggaacac cagtgatgcg tccactccgg tcctctcgta ctaggagcag cccctctcaa
    15481 ttctccaacg cccacggcag atagggaccg aactgtctca cgacgttcta aacccagctc
    15541 gcgtaccact ttaaatggcg aacagccata cccttgggac ctacttcagc cccaggatgt
    15601 gatgagccga catcgaggtg ccaaacaccg ccgtcgatat gaactcttgg gcggtatcag
    15661 cctgttatcc ccggagtacc ttttatccgt tgagcgatgg cccttccatt cagaaccacc
    15721 ggatcactat gacctgcttt cgcacctgct cgacttgtct gtctcgcagt taagcttgct
    15781 tataccattg cactaacctc acgatgtccg accgtgatta gcaaaccttc gtgctcctcc
    15841 gttactcttt gggaggagac cgccccagtc aaactaccca ccagacactg tccgagaccg
    15901 cgttccgcaa tcttcgttag aacatcaaac gttaaagggt ggtatttcaa ggacgcctcc
    15961 acaatcactg gcgtgactgc ttcaaaggct cccacctatc ctacacatca aaattcaatg
    16021 ttcagtgtca agctatagta aaggttcacg gggtctttcc gtctagccgc gggtacaccg
    16081 catcttcacg gcgatttcaa tttcactgag tctcgggtgg agacagcctg gccatcatta
    16141 tgccattcgt gcaggtcgga acttacccga caaggaattt cgctacctta ggaccgttat
    16201 agttacggcc gccgtttact ggggcttcga tcaggagctt ctcttgcgat aacaccatca
    16261 attaaccttc cagcaccggg caggcatcac accctatacg tccactttcg tgtttgcaga
    16321 gtgctgtgtt tttaataaac agttgcagcc agctggtatc ttcgaccggt tcaaccttca
    16381 tccgcaaggg actacaatct acgccggcgc accttctccc gaagttacgg tgctattttg
    16441 cctagttcct tcacccgagt tctctcaagc gcctgagtat tctctacctg accacctgtg
    16501 tcggtttata gtacggttta taataacctg aagcttagtg gcttttcctg gaagcgtggt
    16561 atcgattact tcatctccgt agagactcgt catcacttct cggtgttaag gaagaccgga
    16621 tttgcctaat cttcccacct accggcttaa acagacatcc aacagtctgc taacctaacc
    16681 ttctccgtcc ccacatcgca gttattacaa gtacgggaat attaacccgt ttcccatcga
    16741 ctacgctttt cagcctcgcc ttaggggccg actcaccctg ccccgattaa cgttggacag
    16801 gaacccttgg tcttccggcg aacgagtttt tcactcgttt tatcgttact tatgtcagca
    16861 ttcgcacttg tgatatctcc agcagacttc tcaatccacc ttcatcgact tacacaacgc
    16921 tcccctaccc aacagacttt cgtctgatgc cgcagcttcg gtgctatatt tgagccccgt
    16981 tacatcttcc gcgcaggccg actcgactag tgagctatta cgctttcttt aaatggtggc
    17041 tgcttctaag ccaacatcct agctgtctaa gccttcccac ttcgtttccc acttaatata
    17101 gactttggga ccttagctgg cggtctgggt tgtttccctc tccacgatgg acgttagcac
    17161 ccaccgtgtg tctcctgagt atcactcttc ggtattcgca gtttgcatcg ggttggtaat
    17221 ccgggatgga cccctagccg aaacagtgct ctacccccga aggtgtccgc tcaaggctct
    17281 acctaaatag atttcgggga gaaccagcta tctcccggtt tgattggcct ttcaccccca
    17341 gccacaagtc atccgctaat ttttcaacat tagtcggttc ggtcctccag ttagtgttac
    17401 ccaaccttca acctgcccat ggctagatca ccgggtttcg ggtctatacc ttgcaactac
    17461 acgcccagtt aagactcggt ttccctacgg ctcccttatt cagttaacct tgctacaaaa
    17521 tataagtcgc tgacccatta tacaaaaggt acgcagtcac aagattactc ttgctcccac
    17581 tgcttgtacg cacaaggttt caggttctat ttcactcccc tcgccggggt tcttttcacc
    17641 tttccttcac agtactggtt cactatcggt caatcaggag tatttagcct tggaggatgg
    17701 tccccccatc ttcaaacagg atatcacgtg tcccgcccta cttgttgtta gcctagtacc
    17761 acaatggagt tttaaggtac gggattatca ccctctacga ttgtccttcc cagaacattc
    17821 ccctaacttt actgctatca ctaactggct ctttcgcgtt cgctcgccgc tactaacgaa
    17881 atctcggttg atttcttttc ctcggggtac ttagatgttt cagttctccc ggtttgcctc
    17941 acacagctat gtattcactg ggtgatagta ggttcttcac ctactgggtt tccccattcg
    18001 gacatcttgg attaaacgcc tcttatcgac tcatccaagc ttttcgcaga ttagcacgtc
    18061 cttcttcgcc tctgattgcc aaggcatcca ccttgtgcgc ttagtcactt aactatacaa
    18121 cctcaaatgt tttctaaaac ttctcaaaaa taaaagtaaa aaaacaatga agtcagtttt
    18181 acaactaaac acttgactgc ttttgttcag tcaagatttt ttctactcag actttcaatt
    18241 tattcgttat cacttatgta taattactta tgcgtaacga acttgaaata tctctcagtt
    18301 tttcagcttg tttctatatt gttaaagaac agaagacaat aaaaatcatc tttaaatggc
    18361 gtccccacgg ggattcgaac cccggttacc gccgtgaaag ggcgatgtcc taggcctcta
    18421 gacgatgggg acaacattta aagatgcttt ccactttgcc atttaggagt aaaatattct
    18481 agccaatttt gcaaaaatct tcaagatttt caccgcttgg atggctatct ttcactcatc
    18541 ttctctcatt cat
//
LOCUS       DANMGB010000036        18216 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.036, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000036 DANMGB010000000
VERSION     DANMGB010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18216
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.036"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..684
                     /locus_tag="PXG19_000911"
     CDS             <1..684
                     /locus_tag="PXG19_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL6066228.1"
                     /translation="YQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGDYLESSDAQIF
                     RDKYQELEFKPNPDFNGPYYGLDFGFANDPTACVKCWVFDDDLYIEREAGKVRLELDE
                     TAAYLANALPDLSNYTVRADSARPESISYLKRHGLPYIQPVPKWKGSVEDGVEHIKSY
                     RKVYIHPSCTEVLKEFRLYSYKTDRLSGDVLPIIIDAHNHYIDAIRYALNPLIQARGE
                     AKQCALKVY"
     gene            697..2100
                     /locus_tag="PXG19_000912"
     CDS             697..2100
                     /locus_tag="PXG19_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4055 domain-containing protein"
                     /protein_id="HDL6066229.1"
                     /translation="MPNSISADFAALKAKTKIIDDLLGGTQKMRQAGQTYLYKMKMEE
                     EDGYKNRLNRSTLYPALRETLSQMLGRVFFNPINVEDVHKQIEPLFDDIDLEGNNLDV
                     FASRWFYAALAYGVSYCLVDFVRVENARSLAEEKAQNARPYLVHIKPQQVLGFKTAKI
                     NGKTAFTQFRYKETVTEDDGEFASKQVNYIYVYEIGRVRKYKNDEGGLSLVADMQIKA
                     QNTPLAFVPIVPFITKPIDVWGMGEPPLMELAYLNIKHWQSQSDQDNILNIARVPLLA
                     IFSDTQIKSLEIGSSAISLPKDSTMQFIEHSGSSINAGLTSLKELEDQMKTAGAKLLT
                     KTALAMTDSQAKDEAGKEISQLRHYANKFEDALDLAFEYIGHWLGIGVDEVGTSQISG
                     NIDNDLDPNASMATIIQLRNAGVISNHSTFEEAKRRGLLSDSAKWEDEQARLQAEGLS
                     DDFTNPFNSNQSENAAS"
     gene            2048..3709
                     /locus_tag="PXG19_000913"
     CDS             2048..3709
                     /locus_tag="PXG19_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6066230.1"
                     /translation="MTLQIHSIRTKVKTPLAKRIAHALTDRKILQFRFDAHLRNQVWQ
                     RLTKTQKALLNRINAAGIDALPKRELDKLLKELKAEIAKNYQETTAYIQPELSGFFAV
                     EKQALTELYNDEIGYDFFNQVPSYQRKATQQATIIAGMPLESWFEKQGSELSFKFEST
                     IRQGLLEGRQTPEIAKATAELFGISRRHADTLVITAVAKVADDAHKALRDENLDLIKG
                     EMHLSTLDTRTSTVCQVRDGKMWDTDYKPIGHSLPYQRPPLHPRCRSILQLVMKDWKE
                     LGFDDVKEMPKSTRASADGQVSEKTNYEEWLSSKTPEEQDKALGKGKADLWRRGVITF
                     SDMLDQSARPLTLKELYSLKNSSSVDKMDSVELVRKKAVAVEPMITRDVVSIITASGG
                     EPAGLDFRLKSLSSLQRKIDTEIMAGVSKEQAIASIRDVIRYTAILDEQRFVEQYQKM
                     QKDLEKQGYSTIIVKNTWKSNNAYKGINTFVSTFIEKNNIIFELQYHTKQSFELKNGK
                     LHELYEKFRDLNIPLAKKSEILLEMQKLSANLKEPKNIDLIKEKK"
     gene            3709..3927
                     /locus_tag="PXG19_000914"
     CDS             3709..3927
                     /locus_tag="PXG19_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066231.1"
                     /translation="MYQYYLAQVGNEQQKLIRGMPDNLLSFSVYEPEQEDWDNKFGPF
                     WADKILISGFDAYEEISEKEAIRFIKVH"
     gene            3928..4341
                     /locus_tag="PXG19_000915"
     CDS             3928..4341
                     /locus_tag="PXG19_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDL6066232.1"
                     /translation="MCQAEQFARQLHYGQTDKAGKPYIEHLAFVAENISTKNEETEAV
                     AWLHDSVEDTQCSINDIRHIFGDVIADAVEAITKKQGESYFCYLDRVKSNPIAKVVKL
                     ADLTHNLCLERLPKITEKDLKRAEKYKSALEYLQA"
     gene            4459..5193
                     /locus_tag="PXG19_000916"
     CDS             4459..5193
                     /locus_tag="PXG19_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066233.1"
                     /translation="MKLKLDENGHVVVENGMPVYIHDDGKEIPFDALKATQKITQLNA
                     EAKQHREAKEKAEADLKAFSGIDDPKAALEALKTVANLDAKKLIDAGDAEKVKAEIIK
                     GYDEKLAVATAQAEKLQQQLHAELIGGSFARSKYAQEHLNIPSDVVQAFFGKHFSISD
                     DGKVVAKFADGGEIFSRTRPGEKADFEEALEALVSAYPNKDAILKPSGSSGAGAGGGS
                     RSSSMPKTLSDCKTDEERIAYLQANS"
     gene            5259..6206
                     /locus_tag="PXG19_000917"
     CDS             5259..6206
                     /locus_tag="PXG19_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066234.1"
                     /translation="MAFDLQVFNKQTQLALTETVDQAIEKFNAASGGAIILQNKPAEG
                     DFDIRASFKGIAGLVRRRNVYGTGTVDAKRLEQLLDVAVKVAAGTAPIEYQPSQYKWI
                     LLNPELAAIEIGTQLAKARVADMLNTAIAGTVAAISGNTAMTLDEKTAAPTFRILNKG
                     AAKMGDRAGSLKAWVLHSTTLHGLYDNALTNAENLFKYENVNVIRDPFGRVFVVTDSP
                     ALMASDGTFNTLGLVENAVVVSGNNDFDSVLVPKTGGENLSAVYQAEWTYNLGILGYK
                     WDMTAGGKSPNDTALGTPTNWDKSVTSNKDTAGVLVKTK"
     gene            6266..6616
                     /locus_tag="PXG19_000918"
     CDS             6266..6616
                     /locus_tag="PXG19_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066235.1"
                     /translation="MKRILYFTTDFSAKNIAFAKAHGVLMRNLNAYHPSDTLENADAV
                     CGNVPQAYQHLPLFELPESNQKSGQDLKTLKTEEIKEKLTELGIAFEANAKKETLLTL
                     LTQAVGRDGTNDAK"
     gene            6606..7043
                     /locus_tag="PXG19_000919"
     CDS             6606..7043
                     /locus_tag="PXG19_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066236.1"
                     /translation="MLNSYMTVEQANAYHDIRMSREAWNALSDQEKQQRLVSASDFLD
                     FNYRFSGEKADLTQEREFPRKGFEAIGIPKAVQFAVCELALQDNLTANQEAQMSSVRV
                     GPVSVNYDNSSPQNSVNRFEYVRQLLSTWLDRSSFGTVKLERS"
     gene            7043..7414
                     /locus_tag="PXG19_000920"
     CDS             7043..7414
                     /locus_tag="PXG19_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066237.1"
                     /translation="MADFYGNLGKISHSLIKQFGQPCSVTINEQGRYNPATGERKKGS
                     STVHAGYCLFDNLAFDFRNQQSVSVQQGDVMIYLTADCKPVLNAVIEANGEKWSVINV
                     QPIRPAATTMIYQVQGRKADG"
     gene            7407..7820
                     /locus_tag="PXG19_000921"
     CDS             7407..7820
                     /locus_tag="PXG19_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6066238.1"
                     /translation="MGSFHAQIARFVEQTQQKADRALRVIALQTLSGVQKKSPVDTGQ
                     LRRSWTVALNGFPSSYNGSQTVLNSAKFGDMIVIATNKPYAPMLEYGLYPNPPKKPTG
                     KTKNGYSIQAPNGMVRITVQEMQAFIRNNPQLGVS"
     gene            7820..8212
                     /locus_tag="PXG19_000922"
     CDS             7820..8212
                     /locus_tag="PXG19_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066239.1"
                     /translation="MRPIIRSVLEQHLAELNPFNTVWEGIIDSPKLPYQTVSMTTSTN
                     ETATIGNTPKAKQSGFLQVTLYYPLDQGTKAIEERADEIFRHFFGQVWIEENVQILVQ
                     QPPLVASLYRLDNSIALPVTIYFTAYEL"
     gene            8222..9244
                     /locus_tag="PXG19_000923"
     CDS             8222..9244
                     /locus_tag="PXG19_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066240.1"
                     /translation="MSILGNSQGTKRTVVFAKESSFGTKAAPTGAKIMPRVETSLNTN
                     FESYQSEEIRDDLQRSASVIGFEKVEGDIKGELAAGQWAAFFAAALRGSFTAQAKKPI
                     ITKTTDGTGEKNGKILIVPKTSHTSDSFTLEDVFKDINVSRQYLGCRVSKLSLDVQPN
                     GIASITVSFLGQRGEESTTAYFTNPTDLTQSGKLAGVKGSLQVNKRPVGLVTAFKLDI
                     DLGASSEPVLGAKYAPDVFIGTVAVSGSFTMYFQDKTMIDAVRNGTDLSLALRMDAEE
                     RTNTDYLTIILPGVKVTSNELDDGAKNIMQTLNFDAFPAVWDSASQIDNVLKVATTMI
                     VQDSLA"
     gene            9334..9735
                     /locus_tag="PXG19_000924"
     CDS             9334..9735
                     /locus_tag="PXG19_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066241.1"
                     /translation="MNLNALSKEKQLAEHRFELVHPVSGEPLGVFMSVVSAKSDKAQR
                     FAEKQLRQEQMRELENAKSRKPKFKGLGDMIAESRAMAIDRLTGWENVEWNEKPLEFS
                     DQNAELLLTECDWIVEQIFEHSNDLGKFLKS"
     gene            9750..10076
                     /locus_tag="PXG19_000925"
     CDS             9750..10076
                     /locus_tag="PXG19_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066242.1"
                     /translation="MYAEKTFKLDKKLKGSESTLREHLQAIEMQTGITPEELHNPEPS
                     PAVAYLLGWFFELAMSRQSGMSLNPISYTEIDAWSRLFARHLEQWEISVIKQLDMIYL
                     NVQQTE"
     gene            10078..10401
                     /locus_tag="PXG19_000926"
     CDS             10078..10401
                     /locus_tag="PXG19_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066243.1"
                     /translation="MDTFNFQPNWGLNVQRKPEVMKIAFGDGYEQVAPKGLNHNLRTY
                     SAVFTGTEARIKQIEAFFERQGGYKAFLWTPYGGKEGKFRCEEWEVSISSGKWTLSAT
                     IREVL"
     gene            10488..11180
                     /locus_tag="PXG19_000927"
     CDS             10488..11180
                     /locus_tag="PXG19_000927"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066244.1"
                     /translation="MKKIFVSALLLTCSLSALGNSSYELIIDSMQDLEKHKPEILSIP
                     EADRNTFIRYMMRKELRIKLNQGRLADGLTVREAIQNQQAFEKDRNSKMQQEKQKKET
                     EKAEKEKAVTDFNQKFELSITGARKAKNALNQDILLVSLSLKNNSDKPIIAVQPDIQF
                     VLGEDKQTISSMRPKKFENGIPPNGSEIFEFGFDLDDMFALKAEKNIEKLRAVFQTAE
                     VLFADGTTEKLQ"
     gene            11244..12068
                     /locus_tag="PXG19_000928"
                     /pseudo
     CDS             11244..12068
                     /locus_tag="PXG19_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015691083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
     gene            14112..14270
                     /locus_tag="PXG19_000929"
                     /pseudo
     CDS             14112..14270
                     /locus_tag="PXG19_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            14278..14994
                     /locus_tag="PXG19_000930"
     CDS             14278..14994
                     /locus_tag="PXG19_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6066245.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRNLKDKSGNAGRVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITSIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKSTSDPKADKCSHCLNG
                     CELRGNQRNFGGFVSVNKLG"
     gene            14998..15729
                     /locus_tag="PXG19_000931"
     CDS             14998..15729
                     /locus_tag="PXG19_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6066246.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLADKLDFDGILNDIAVNN"
     gene            15998..16627
                     /locus_tag="PXG19_000932"
     CDS             15998..16627
                     /locus_tag="PXG19_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6066247.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            16637..>18216
                     /locus_tag="PXG19_000933"
     CDS             16637..>18216
                     /locus_tag="PXG19_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL6066248.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKY
                     SSQYLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAV
                     AGISFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEI
                     YDLAPILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYD
                     LLNDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQ
                     VTYSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKRE
                     KETITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASY
                     FTYINGEATHSSKIQSVNG"
BASE COUNT         5717 a         3525 c         4252 g         4722 t
ORIGIN      
        1 taccaagata atccttggtt tcctgatgtg ctcgagcaag agcggctaaa tgacaaacag
       61 cggcttgatg atgcgactta tcgctggatt tgggaggggg actacttaga atcctctgat
      121 gctcaaatct ttagagataa ataccaagaa ttagaattta agcctaaccc tgattttaac
      181 ggtccttatt acgggctgga ctttggtttt gccaatgacc caacagcctg tgtgaaatgt
      241 tgggtgttcg atgatgactt atatatcgag cgtgaagcag ggaaagtaag actagagctc
      301 gatgagaccg ctgcttattt agcaaatgct ttgcctgatt tgagtaatta tactgttaga
      361 gcagattctg ctcgcccaga atccatcagt tatttaaaac gacatggatt gccttatatt
      421 caacctgttc caaagtggaa aggctcagtc gaagatgggg ttgagcatat aaaatcttat
      481 cgtaaagtat atattcatcc aagttgtaca gaggtattga aagaatttcg cctttatagt
      541 tacaaaacgg acagattaag tggtgatgta ctgcctatca ttattgacgc tcataaccac
      601 tatattgatg ccattcgtta tgccttaaat cctcttattc aggcaagagg cgaggcgaag
      661 caatgtgcat taaaggttta ttaaaatgag gtaacaatgc ctaactccat ctcagccgat
      721 tttgcggcat taaaagcaaa aacaaaaatc atcgatgatt tactcggtgg cacacaaaaa
      781 atgcgacaag cgggtcaaac ctacctctat aaaatgaaaa tggaagagga agatggatat
      841 aaaaaccgat taaatcgttc tacgctttat ccggcattga gggaaacgct ttcgcagatg
      901 ttggggagag tgttttttaa tccgatcaac gtagaggatg tgcataaaca aatcgaacca
      961 ttgtttgatg atattgattt agagggtaac aatcttgatg tattcgcttc tcgttggttt
     1021 tatgctgcat tggcttatgg cgtatcttat tgcttggtgg attttgtgag ggtagagaat
     1081 gcccgcagtc ttgcagaaga aaaagctcaa aatgcacgtc cgtatttggt gcatattaag
     1141 ccgcaacaag tgctgggctt taaaacagcc aaaatcaacg gtaaaactgc ttttacccaa
     1201 tttcgttata aagagacagt tacagaagat gatggcgagt ttgcttctaa acaggtgaac
     1261 tacatttatg tttatgaaat cggacgtgtc cgaaaatata agaacgatga gggtggctta
     1321 tcactggttg ctgatatgca aatcaaagct caaaatacac cgcttgcatt tgtgcctatt
     1381 gttccattta tcactaaacc gattgatgtt tggggaatgg gtgagccgcc tttaatggag
     1441 ctggcttatt taaatattaa gcactggcaa agtcagtcag atcaagacaa tattttgaat
     1501 attgctcgtg taccgctatt agctattttc tctgatactc aaataaaatc ccttgaaatc
     1561 ggctcaagtg caatatctct gccgaaagac agtacaatgc agtttattga gcattcaggt
     1621 tcgtctatta atgccggttt aaccagtctg aaagaactag aagaccaaat gaaaactgcc
     1681 ggtgcgaaac tgctaactaa aacagcatta gcaatgacgg atagtcaggc taaagatgaa
     1741 gcaggtaaag agatctcaca gcttagacat tatgctaaca aatttgaaga tgctctcgat
     1801 ttggcttttg agtacattgg gcattggcta ggtatcggcg ttgatgaagt tgggacttcg
     1861 caaatttcag gcaatatcga caatgattta gatccaaatg cgtcaatggc aaccattatt
     1921 cagctacgca atgccggtgt catttcaaat cactctacgt ttgaagaagc taaaagacga
     1981 ggtttattgt cagatagtgc aaaatgggaa gacgaacaag caaggttaca agcggaaggt
     2041 ttaagcgatg actttacaaa tccattcaat tcgaaccaaa gtgaaaacgc cgctagctaa
     2101 acggatcgct cacgcattaa cagatcgtaa aatattgcag ttccgttttg atgctcattt
     2161 acgaaatcaa gtttggcaac gactcacaaa aacgcaaaag gcattattaa accgaattaa
     2221 tgcagccggg atagatgcct taccgaaaag agagttggat aaactgctca aagaactcaa
     2281 agcagaaatt gcaaaaaatt accaagaaac gaccgcttac attcagcctg aattaagcgg
     2341 tttttttgcg gttgaaaaac aggcactgac tgagctttac aatgatgaaa tcggctatga
     2401 ttttttcaat caagtgccgt catatcaacg taaagctacg caacaagcga ctattattgc
     2461 cggaatgccg cttgaaagtt ggtttgaaaa gcaaggatca gagctttcgt ttaaatttga
     2521 aagcaccatt cggcaaggct tgttagaggg taggcaaacg cctgagattg ccaaagctac
     2581 ggctgaatta tttggtatat ccagacggca cgctgataca cttgtcatta ctgctgtggc
     2641 aaaagtggcg gacgatgctc acaaggcatt gcgagatgaa aatcttgatt taattaaggg
     2701 tgagatgcac ttatcaacgc tcgatacccg caccagtact gtttgtcaag tgcgagacgg
     2761 taagatgtgg gacactgatt acaagcctat cggacacagt ttgccgtatc aacgcccacc
     2821 acttcaccct cgctgtcgtt cgattctgca actggtgatg aaagactgga aagagttagg
     2881 ctttgatgat gtgaaagaaa tgccgaaaag cactagggcg agtgcagacg ggcaagtgtc
     2941 ggagaagaca aactatgaag agtggctcag tagcaaaaca ccggaagagc aagataaagc
     3001 gctaggcaaa ggcaaggcgg atttgtggcg gcggggagtg ataacgttta gcgatatgtt
     3061 agatcaaagt gctagaccat tgacactaaa agagctatat tcattaaaaa atagttcttc
     3121 ggtagataaa atggatagtg tggaacttgt ccgtaaaaag gctgttgcag ttgagcctat
     3181 gattactcgt gatgtagtat caattattac agcatctggg ggcgagcctg ccggcttaga
     3241 ttttcgcttg aaatcactat catctttgca gcgaaaaatt gatacggaaa taatggccgg
     3301 agtgtcaaaa gagcaagcga tagcaagtat tcgagatgtt attcgctaca ctgcaatctt
     3361 agatgaacag cgttttgttg agcaatacca aaaaatgcaa aaagacttgg agaaacaagg
     3421 ttattctacg atcattgtta aaaacacttg gaaatcaaat aatgcttata agggcattaa
     3481 tacgtttgtg agcactttta ttgaaaagaa taatataatt tttgaattgc aatatcatac
     3541 aaaacaaagt tttgagttga aaaacggtaa attgcacgag ctctatgaaa aattcagaga
     3601 tctgaatata cctcttgcaa aaaaatcaga aattttactt gaaatgcaga agttaagtgc
     3661 taatctaaaa gagccaaaga acattgattt aatcaaggag aaaaaataat gtatcagtat
     3721 tatttagctc aagttggcaa tgaacagcaa aaacttattc gtggtatgcc tgacaatcta
     3781 cttagtttct cggtttatga gcctgaacaa gaagattggg ataataagtt cggcccattt
     3841 tgggcagaca agatcttgat aagcggattt gacgcttacg aggaaatttc agaaaaggaa
     3901 gcaatccgat ttatcaaggt acattaaatg tgtcaagctg aacaattcgc tcgccaactg
     3961 cattatggac aaacagataa agctggaaag ccatacattg agcatcttgc ttttgttgca
     4021 gaaaacatta gcacaaaaaa tgaagagaca gaagcagtag cttggttgca cgacagtgta
     4081 gaagatactc agtgttcaat taatgatatt cgtcatatat ttggcgatgt tattgctgat
     4141 gcagttgagg ctattactaa aaagcaaggc gaaagttatt tttgctactt ggatagagta
     4201 aaatcaaatc ctattgctaa ggtggttaag ttagctgatt tgactcataa tctttgcctt
     4261 gagcgattgc ccaagatcac tgaaaaggat cttaaacgag cagaaaaata caaatcagca
     4321 ttggaatatc tacaagccta gcctaaaacg ctaggctttt ttatcgcaat tttttacccc
     4381 aaactgaccg tttgtgagcc atcacaggcg gttttttatt atcgggcgga agcccaccag
     4441 caatgagagg aagctcaaat gaaattaaaa ttagacgaaa acggacatgt agtagttgaa
     4501 aatggtatgc ctgtgtatat tcacgatgac ggaaaggaaa ttccgttcga tgcactaaag
     4561 gcgacacaga aaatcacaca actgaacgct gaggcaaagc aacatcgaga agctaaagag
     4621 aaagcggaag ccgacttaaa agcattctca gggattgacg atccgaaagc tgcactcgag
     4681 gcattaaaga cggttgccaa tttagatgct aaaaagctga ttgatgccgg tgatgcggaa
     4741 aaagtcaaag cggaaatcat caaaggttac gatgagaaat tagctgtggc aaccgctcaa
     4801 gccgaaaaac tgcaacagca gttacacgct gaattaatcg gtggttcgtt tgctcggtct
     4861 aaatacgctc aagaacactt gaatattccg tctgatgtcg tacaggcatt cttcggtaag
     4921 cattttagta tttcggatga cggcaaagtg gtagctaaat ttgctgacgg gggcgaaatc
     4981 tttagtcgca cccgcccggg cgaaaaagca gattttgaag aggcattaga agctttagta
     5041 agtgcttatc caaataaaga cgctatttta aaaccaagtg gttcaagtgg ggcaggagca
     5101 ggtggcggat cacgcagttc atctatgccg aaaacattat cggactgcaa aacagatgaa
     5161 gagcgtatcg cttatcttca agcaaattcg taaggtgcaa gaggttgcac cttttttatt
     5221 ttcggtgcaa tcgcaccact ttttagagga aaatcaaaat ggcatttgac ctacaggttt
     5281 ttaacaaaca aacgcaatta gccttgaccg aaactgtcga tcaggctatt gaaaaattca
     5341 atgcagcatc aggcggtgca atcattttac agaacaagcc agctgaaggt gattttgata
     5401 tccgtgctag ctttaaaggt attgccggtt tagttcgccg ccgtaatgtg tacggtacag
     5461 gtacggtaga tgcaaaacgt ttagagcaat tactggacgt agcagttaaa gtggcggcag
     5521 gtacagcacc gattgaatac cagccgagtc aatataaatg gattttatta aatcctgaat
     5581 tggcggcgat tgaaatcggc acacaacttg ccaaagcccg tgttgctgat atgctcaata
     5641 cggctattgc cggcacggtt gctgcaatta gtggcaatac agcaatgaca cttgatgaaa
     5701 agaccgccgc tccgacattc cgcattttaa acaaaggtgc agcgaaaatg ggtgatcgtg
     5761 ccggttcgct taaagcgtgg gtgttgcact ccacaacctt acacggctta tacgataatg
     5821 ccttaaccaa tgcggaaaac ttattcaagt acgaaaacgt gaacgtaatt cgtgacccgt
     5881 ttgggcgtgt atttgtcgtc acagacagcc cggctttaat ggcttcagac ggtacattta
     5941 acaccttagg cttggttgaa aatgcggtgg tagtttccgg caacaatgac tttgacagcg
     6001 tgttagtgcc gaaaaccggc ggagaaaacc tttcagcagt ttaccaagct gaatggacct
     6061 ataacttagg aatcctaggt tataaatggg atatgaccgc tggtggtaaa tcaccgaacg
     6121 ataccgccct aggcacaccg acgaactggg ataaatcggt tacctccaac aaagacaccg
     6181 ccggtgtatt ggtaaaaacg aagtaatttt taaccgcttg tagataaggt ttacaagcgg
     6241 ttgttttttt atctggagtt tgcaaatgaa acgaatactt tattttacaa cggatttttc
     6301 ggcaaaaaac attgcctttg ccaaagctca cggtgtatta atgcggaatc tgaacgctta
     6361 ccacccatca gacaccttag aaaatgcaga tgcagtgtgc ggtaacgtac ctcaagctta
     6421 tcaacattta ccgttgtttg aattgcctga gtctaaccaa aaatcaggtc aagatttgaa
     6481 aaccttaaaa accgaagaaa ttaaggaaaa actgactgaa ttaggtattg cttttgaggc
     6541 gaatgccaaa aaagaaacat tactaacctt actcactcag gcggtgggac gtgacggaac
     6601 aaacgatgct aaatagttat atgacggttg agcaagccaa cgcctatcac gacatcagaa
     6661 tgagccgtga ggcgtggaat gcgttaagcg atcaagaaaa acagcaacga ttggtgtcag
     6721 cgtctgattt tctggatttc aattatcgtt tttcaggcga aaaagcagat cttactcaag
     6781 agcgtgaatt tccacgcaag ggttttgaag ctatcggtat tcctaaagcc gtgcaatttg
     6841 cggtatgtga gttggcattg caagataact tgaccgcaaa tcaagaagct caaatgagta
     6901 gcgtaagagt tggcccggtt tcagttaatt atgataacag ttcaccgcaa aacagcgtga
     6961 atcggtttga gtatgtgagg cagttgcttt ccacttggtt agatcgatct tctttcggca
     7021 cggttaagtt ggagcgtagt tgatggcgga tttttacggc aatttaggga aaatctccca
     7081 ttctttgatt aagcaattcg ggcagccttg tagtgtaaca attaacgaac aaggcagata
     7141 caaccctgca accggtgagc ggaaaaaagg tagctcaacg gttcacgcag gctattgtct
     7201 gtttgataat ttggcgtttg atttccgcaa tcagcaatct gtcagcgttc aacaaggcga
     7261 tgtgatgatt tatctcactg ccgattgcaa accggtatta aatgctgtga ttgaagcaaa
     7321 cggcgaaaaa tggtcggtca tcaacgtcca gcctatacgc ccagcagcta ccacgatgat
     7381 ttatcaagta caagggagaa aagccgatgg gtagttttca cgctcaaatc gcccgttttg
     7441 tggaacaaac gcaacaaaaa gcggataggg cgttaagggt aattgccctg caaaccttaa
     7501 gtggggtgca gaagaaatcg cctgtcgata ccggacaact tcggcgtagc tggacggtgg
     7561 cattaaatgg tttcccgagc agttataacg gcagtcaaac cgtgctgaat agtgctaaat
     7621 tcggcgatat gattgtgatt gctaccaata aaccttatgc accaatgctc gaatatgggc
     7681 tttacccgaa cccaccaaaa aaaccgaccg gcaagaccaa aaacggttat tcaatacaag
     7741 cacctaatgg aatggtgcga attaccgtgc aggaaatgca agcctttatc cgcaataatc
     7801 cacaattagg agtaagctga tgcgaccgat tatccgctcg gtattagagc aacatcttgc
     7861 cgaactcaat ccgtttaata cggtttggga gggcatcatc gacagcccga aactgccgta
     7921 tcaaaccgta tcaatgacga cttcaaccaa cgaaaccgcc acgattggta atacgccgaa
     7981 agccaaacag agcggttttt tgcaggtcac gctttactat ccgctagatc aggggacaaa
     8041 ggcgattgag gaacgagccg atgagatctt ccgccacttt ttcgggcagg tctggattga
     8101 ggaaaatgtg caaattctgg tgcaacagcc accgcttgta gcctcacttt atcgactgga
     8161 taacagcatt gccttacccg tcaccatcta ttttaccgct tatgaactat aggagaaccc
     8221 aatgtctatt ctaggcaatt cacaaggcac aaaacgtacg gtcgtttttg ccaaagagag
     8281 ttctttcggc acgaaagctg ctccgacagg cgcaaaaatt atgcctcgtg ttgaaacctc
     8341 actcaatacc aattttgaaa gttatcaatc ggaagagatc agagatgatt tacaacgctc
     8401 cgcctctgtg atcggctttg aaaaggtcga aggcgatatt aaaggcgaac tagccgccgg
     8461 acaatgggcg gcattttttg cggctgcatt acgtggttca tttaccgctc aggcgaaaaa
     8521 gccgattatt accaaaacca cagacggcac cggcgagaaa aacggtaaaa ttttgattgt
     8581 gccgaaaacc agccacacct ccgacagttt cacgctggaa gatgtcttca aagacatcaa
     8641 cgtcagccgc cagtatttgg gatgtcgtgt atcgaaactc agccttgatg tgcaaccaaa
     8701 cggtattgcc tcgattacag tctcattttt agggcaacga ggcgaagaaa gtacaacagc
     8761 ctattttacc aatcccaccg atttaaccca atccggcaag ctggcagggg taaaaggctc
     8821 attgcaggtc aataaacgcc cagtcgggtt agtgacggcc tttaaactgg acattgattt
     8881 aggggcaagc agtgagccgg tattaggggc aaaatacgcc cctgatgtct ttatcggtac
     8941 agtggcagtg agcggatcgt ttacgatgta cttccaagac aagacgatga ttgatgcggt
     9001 gcgtaacggc acagatttat cccttgcttt gcggatggat gccgaagagc gtaccaatac
     9061 cgactattta accattatct taccgggtgt caaagtgacc tcaaacgagt tggacgatgg
     9121 ggcgaaaaac attatgcaga cactcaattt tgacgcattc cctgcggtat gggattcagc
     9181 aagccaaatc gacaacgtgc taaaagtcgc caccacaatg attgtgcaag acagcctcgc
     9241 ttaatcgaaa ttttgcaaaa aaataaccgt atctaaccgc ttgccctcaa acaagcggtc
     9301 ttttttatcc ccaatttaca aaaggaaacc caaatgaatt taaacgcatt aagtaaagaa
     9361 aaacagttag ccgaacaccg ttttgagctg gttcaccctg ttagtggcga accgctcggc
     9421 gtgtttatga gcgtcgtgag tgctaagagt gataaggctc aacgctttgc cgaaaaacaa
     9481 ttacgccaag aacagatgag agagctggaa aatgccaaat cccgcaagcc gaaattcaaa
     9541 ggcttaggcg atatgattgc cgaaagtcgt gcaatggcga ttgaccgctt aaccggctgg
     9601 gagaatgtcg aatggaacga aaaaccgttg gagttttccg accagaatgc ggagctactt
     9661 ttaaccgaat gtgattggat tgtggagcaa atctttgagc attcgaacga tctgggaaag
     9721 ttcttgaaga gctaattgat gatttacagg tgtatgcaga gaaaacgttt aagttggata
     9781 aaaaacttaa aggcagcgaa agtaccttgc gagagcattt gcaggcaatc gaaatgcaaa
     9841 ctggcattac accagaagaa ttgcataacc ctgaacccag tccagcggtg gcctatctgc
     9901 tgggctggtt cttcgagttg gcaatgagcc gacaatcggg tatgagctta aacccaatta
     9961 gctacactga aattgatgcg tggagcaggc tttttgctcg tcatctcgaa caatgggaga
    10021 tcagcgtaat taagcagctt gatatgattt acttgaacgt acaacaaacg gagtagtatg
    10081 gatactttca actttcagcc caattggggg cttaacgtac agagaaagcc agaagtgatg
    10141 aaaatcgcct ttggtgacgg ttacgaacaa gtcgccccta aagggttaaa ccataatctc
    10201 cgcacttatt ccgctgtttt caccggcaca gaagcacgga ttaaacagat tgaggcattt
    10261 tttgaacgac aaggcggcta taaggctttt ctttggacac cttacggcgg gaaagagggg
    10321 aaattccgct gtgaagagtg ggaggtaagc ataagcagcg ggaaatggac gctgtcggcg
    10381 acgataagag aagtgttgta gttttttctg attttgtgaa ctggttcaca ctctgtgggt
    10441 tggatatagg ttagaattta agtctaattt gcttaacgga gtcttttatg aaaaaaattt
    10501 ttgtttcagc cttattgctc acttgctcgt tatctgcact tggaaattcc tcgtatgagt
    10561 tgattattga ctcaatgcaa gatcttgaaa agcataaacc cgaaattcta tctataccag
    10621 aagcggatag aaatactttt attcgttata tgatgcgaaa agaactgcgg ataaagttaa
    10681 atcaaggcag attagcggat ggtctaactg tgagagaagc tattcaaaat caacaggcat
    10741 ttgaaaaaga tagaaatagc aaaatgcagc aggagaagca aaaaaaagaa acagagaaag
    10801 cagaaaaaga aaaagctgtt acggatttta accaaaaatt tgagctatcc attacagggg
    10861 cgagaaaggc aaaaaatgca ctaaatcaag atattttgct tgtttcatta agtctaaaaa
    10921 ataactcaga taagccaatt atcgctgtac aaccggatat tcaatttgta ctgggtgaag
    10981 ataaacaaac tatttcatcc atgcgtccaa aaaaatttga aaacggcatt ccgcctaatg
    11041 gctcagagat ttttgagttt gggtttgatt tagatgatat gtttgctttg aaagcagaaa
    11101 aaaatataga gaaattgagg gcagtcttcc aaacagcaga agttcttttt gctgatggaa
    11161 caactgaaaa acttcaatag taattggtaa atcttcattg gccgcttgta gaaatacagg
    11221 cggttttttt attggagcaa gctatggcag atttagcaac actggcgatt aaaatcgaaa
    11281 cagaaggcgc aagccgagca agtgcagatc taagtaaggt cgagcaatct gcaaagaaca
    11341 cagagaaagc cgcagataat ctgacgcgcg caatgggaaa tttgaagcgg attttagcga
    11401 ttgcagggct ggctggtggg ttatccgctt acctagatat ggctgaaaga atgcagtcgt
    11461 taaacgcaca gcttaaattt gttactaact ctcaatacga attcaatagc gcacaaaaag
    11521 agctttttgc gattgcgcag aatacgcgcg ctagtttgga aagcaccacg caactttata
    11581 ttaaatcttc tcaggcactg aaagattacg gctacgcgca aaaggatatt ctcacattta
    11641 ccgaaaccat taacaaagca atggcagttg gcggggttaa gccacaagag caagctagtg
    11701 ctttactcca attatcacag gcattaggtt cagggaaact gcaaggagat gaattccgtt
    11761 caatttcaga agctgcaccg attattttag atacgcttgc cgagtatatg ggtaaaagtc
    11821 gcgatgaagt aagaaaactc gcatccgagg gtaagctcac cgcagactta ctgttcaatg
    11881 cgtttaacgg ttcaagcgct aaaattaccg aaaaatttaa tcaaatgccg ctaacatttg
    11941 gcggtgcaat gcagcagttg cagaatgcca cattgaaatt tatcggtgac ctagatagtg
    12001 caaatggctt gagtggaatg ttagctcaag ccattagttt tttagcacag aattttgatg
    12061 tgttaggcaa ggctttgatt tatgcaaccg gtgcttatat tgcgtttaat gcagttgcct
    12121 ttgctcagaa ttttgcaaaa gcaaccggtg gtgtcggttt attaagtagt gcatttggtt
    12181 atttgactac gatgatccga ggtgcaactg ttgcaatgat ggctaatcct atcgagcttt
    12241 taacaactgc aattattggg gctgcttttg tatttgatgc ttttatcagt gatatagagg
    12301 taggtgcagc aacctttgat gcgacttggg gagatgttgc gacagctgtg tgggatgatt
    12361 ttaaagattt aacttcagat gcggcagatt ggttagtcac tcaatgggat aaagcaaccg
    12421 ccagtgcagc gagttcgttc agttccttag gtgttgatat tggctcagta tgggagacgg
    12481 tgcaatccat tacgaaaaca ttgatcaata gtattattgg tctgtttgtt ggagcttatc
    12541 aagccatcgt gcttgcttgg aataattttc ctgccacaat ggaaaacttg ggtgtgatgg
    12601 cggtaaatgc tcttgtcgat ttggttcaaa aaggcatcaa tagcattatt cagcttatca
    12661 aattaccgat tgagctttta aacagagcct catctacttt tggtggagga aatctgattg
    12721 atacatcagg ttggaaggca agcttagatg attttaaact aaaggcaagc cgcgaggcag
    12781 aagttgttgg tcaatcaatt agccaagcat ttgcggatag tatcaccaca gattacatag
    12841 gcaatgcagt taattcagtg agtgactata ttgatggagc ggcagttcgt gggcgcttaa
    12901 aacgtcaatt agatgaaacc gcctctgacg atcaaggtac gcagtcacca gctaaaaaaa
    12961 cattagctgg aaataataac tctgctagtg actggaaaaa ctacctcaat gaacttgaac
    13021 gagccaatgc cgatggatta gcccgtattg cacttgagca agatcgctca atgcgtgaaa
    13081 tgttggaaaa ggcgaagaaa gccggtgcaa gtcacgctga aattgaaaaa gccaaaatgc
    13141 tgattacaga acgttatgct aaagagcgaa tggaaattgc cgagaagtat gtgccgagtc
    13201 tgaagtttga ggaagaactc aaagatcaga ttaaggaaat tgatgaactg caaaagttaa
    13261 acctgattac caccgagcaa gcaggtcttg cgaaagaggc gttagcaggc aaatatcagc
    13321 cggtagttga aatccaacag caatacatca atcaactgag agagattgaa gcattaaaac
    13381 aagccggtgt attaagcaaa cctcaagcag aagtagcggc cgaaaaagcc aaatgggacg
    13441 ccggcacaca aaaagccaaa atcgcaggta aaaacgccgt tagcccttat gaaaaatgga
    13501 aatcggaatt tgacccaatg caggcaattc aaaatgagca agcctcaaag ttggcagaag
    13561 tgcaatcgat gtacgatcag catttgatcc aatatgagga ttttatcaac gctaaagcac
    13621 aaattgatgc taaggcgact gctgatactc atcaactgtt tatgaacagt attagtgggt
    13681 ttggttcggc gatagatacg atgttaggcg tgatgaaaaa cgcagggcaa gagcaatcag
    13741 gtatttaccg cacgatgttt gcgatgtcga aagcgtttgc tattgcggaa tcaattctga
    13801 acttgaatcg tgcaattact caagcaatga gcgatcaaac agctattaca ccggctcaaa
    13861 aatttgcaaa tatggcggct attgctagtg ccggggcgag cttgatttct aatatccagt
    13921 cagtctcatt aggcggtatg gctcacagcg gtattgacaa tgtgccgaaa gaaggcactt
    13981 ggttgctgga taaaggtgag cgtgtagtgg atagtcgtac taaccaagac ttaaaaacct
    14041 ttttatccaa tgctaatcgt ggcggtgcaa gtggtcaaag atcggcgata aatgtcaaaa
    14101 ttattaataa cgggcaaccc gtagaggcga aagtcagcag tgaagagact gtagatggca
    14161 atatccaaat gacggtggaa ctgctgaaga aaatggatca aatcgccgat caacgctacc
    14221 gtagaaatca gttaaatgat ttaagaacag gtggaacatt atctaaatag gtgaagtatg
    14281 ccaattagta tttctaacca aatgaaacta gatcttgcca aacttgagca aaatgcaatg
    14341 ctggacttgt acgaggttga tttgcgcaat ctcaaagata aaagtggtaa tgctggcaga
    14401 gtttaccgct tttattctgg gctaaatgaa ctcaaaacaa gtatcgtctg gcaagggcgg
    14461 acttacgatc cgtatcctat tgaggcaagt ggatttgaac gaaacagtag cggcccgagc
    14521 aatcgcccga ctctcacgct atcaaatctg tttggtttaa ttaccagtat tgcgaatcag
    14581 tttgacgaat gtatcggtgc gattgtccgc cggcatcagg tttatgctca atatttagat
    14641 gccgtgaatt ttgccggggg taatgcgaaa gctgatccaa atcaggaaat aatcagtcat
    14701 tttgtgattg agcagcttac cagcctcacc cgagaaacgg cgacctttac gctggcatta
    14761 ccgattgaaa ccgataatgc caagatcccc agcagaatta ttatggcgga cacctgcact
    14821 tggatttacc gctcggcgga atgtggctac accggcaagc agtattttga tgaaaaagac
    14881 aaatcaacct cagacccaaa agcagataaa tgtagtcatt gccttaatgg ttgtgaatta
    14941 agaggcaatc aacgcaattt tggcgggttt gtatcggtaa ataaattggg gtaatgaatg
    15001 gaattggaac aacaaataat cgactacgcc ctccaacacg aaccgcacga aatgtgcggc
    15061 tttgttgttt ttgacggcaa taaaaatcga tttatccctt gcgaaaacca agcggaagac
    15121 aaagccaatt actttgaaat atccgatctt gattacatca aagcagaaga aaaaggcgaa
    15181 ctggtagcgg tggtacattc acatcccgag ccaaacggca agcctatatt atctgtgctt
    15241 gatcgcaaaa tgcaggtaca gaccggttta gattggtggc tagtgcataa tcggcaaatc
    15301 cataaattcc gcaatgtacc acatttaatc gggcgtgagt ttaaacacgg cacaatggat
    15361 tgttacacgc tctaccgtga tgcctatatg cttgccggtt acgagatgga cgagttcgag
    15421 cgacaagatg actggtggca taccgggcaa aatctttatt tggataatat ccaagggcaa
    15481 ggttttgagc gagtggaaac cccacaaatc ggcgatgtga ttttaatgca agtaggtgct
    15541 gatgtgccga accacgctgc catttacatt ggcgaacaga tggtaatcca tcatagcccg
    15601 aaccgattat ctaagcgtga tttatacgac ggctattggt tacgtcatac ccacagcatt
    15661 tggcggcata aactggcgga taagttagat tttgacggca tattgaatga tattgctgta
    15721 aataactaac aaaaaatgac cgcttgtaac aaaaacaaac cccgaagcgt ttgcagcact
    15781 tcggggtttt tcatatccac ttacctaact aagaggacat aaattgaatg aatgataaac
    15841 gatttacatt caaatttcta ggagttctta tggaagcaat aaatattacc ccaaaagaaa
    15901 tcagaaaaac aatgtggaca gccgcaataa ttctcttttt gtttgcgttc atctggaaag
    15961 cccctgaatt tatcactgct attcgttggt ggtaactatg attacagtta aattttacgg
    16021 acaccttaaa acattcggca cagattttaa aattttagtt aaagacatcg ctgaggcaat
    16081 tcgtgctctg tgttcacagc ttaaaggatt gcgtgaagcg ttgcgagacg gtgtttataa
    16141 agtccgtatc ggtaagcagt atttagaccc atcagccctt gaaaaagggc ttttttattg
    16201 cctgaagaaa gggcaaacca ttcattttac ccctgttgtc aaaggagcga aaagcggtgg
    16261 tatttttcaa gcggtgttag gtgtggcgtt aattggggct gcatttgcgt taggtcctat
    16321 cggcttagga ttggttggct ctgctacagc aatgacagtt ggagcaatgg gggcatcaat
    16381 gttactagga ggagtttccc aaatgctcac caaaatgcca aaagccccca caatgggtaa
    16441 tgaaacagaa aaagaaagct caacggcttt ttcaaattta aataacttgg tggctcaagg
    16501 caaacctgtg ccgttggctt atggtttgat tcgtaccggc tcgctggtga tatcgcaggg
    16561 agttgagacg atcaccatta aagaaaacca accggcaagc aacaagaaaa ccggctttag
    16621 aaaataaggg ataattatgc gtatttacgg agcaaaaggt ggtggcggca gtagccatac
    16681 cccgattgaa gcaccggaaa ccggtcgctc aaaacagatt gtgaatattg tggaattgct
    16741 gtgcgagggc gaaattgaag gcttggttga tggctttaaa tcgatttacc tagacggcac
    16801 gcagatccaa aacgatgacg gcacctataa ttttaataat gtgagcggtc agctaaatgt
    16861 cggtacgcaa gatcaagatg tgttggacgg ttacgatagc tcacagaatg aagtgaatgt
    16921 gggtgttgag attaagaaaa agaatggggc tattgtccgc accgtaactg atgaacgaat
    16981 taaccgcttg cgtttaacgt tgggagtaag gtcattattc caccaaaata atcaaggcga
    17041 taccaatacc accaatgttg atttaaaaat cacgattggc acacggcaat attcgcatag
    17101 ctttaacggc aaatacagct cgcaatacct tgaatctgtg gtgtttgata acctgccgcc
    17161 tgtgccattt aatatctcag ttgagcgtct aaccgaggat agcaattcgc aacgcttaca
    17221 aaacggtaca atttggagta gttacaccga aattatcgat accgagttta cctaccctaa
    17281 ttcagcggtt gccggtatca gttttgattc ggagtatttt aataatatcc cgacccgaaa
    17341 ctacctaatt aaagcgaaaa aagtcaaagt gccaagcaat tatgatccag ttaaacgcac
    17401 ttacaccggc ttttgggacg gcacatttaa agttgcgtgg acgaacaacc ctgcttggga
    17461 aatttacgat ttagctccga ttttaagcaa aatgcttggg gttgaaatca gttttgacaa
    17521 atgggcgttg tatgatgttg ctcgctattg cgatcaactt gtgccggacg gtatgggtgg
    17581 aatggagcct cgtttcacct gtaacgtatg gctcacggaa gttaaaactg cctatgactt
    17641 gttgaatgat ttctgctcgg tattccgtgc gattccgatt tggaccggaa cagaagtatc
    17701 ggtcattatc gaccgtccgc gtgatccggt ttggacttac acaaatgcta atgtagttgg
    17761 tggatttgaa cgatcctact ctgctcgcaa atcacgccat aatgcagtgc aagttactta
    17821 ttcggataaa acaaatggct atgaaagtgc gattgaatat gtctctgatg acgaggaaat
    17881 caaaaagcac ggcttaaatt taagtcaaat tactgctttc ggttgtacct ctcgggggca
    17941 agcacaccgt accggaaaat ggattttgga aaccgaaaaa cgggaaaagg aaaccattac
    18001 ttttaccgtg ggacgtgagg gcttaatgca cttgccgggc gatattattc gtgtggcaga
    18061 cagccattat gccggtacgg aaattggcgg acgtgtactg gcgattaatg ggcgaaaagt
    18121 cacgttagat cgtgaaatta gcattgataa cgccagttat tttacctata tcaacggtga
    18181 ggcaacgcac tctagcaaaa tccaatcggt aaacgg
//
LOCUS       DANMGB010000037        17646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.037, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000037 DANMGB010000000
VERSION     DANMGB010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.037"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            138..1271
                     /gene="carA"
                     /locus_tag="PXG19_000934"
     CDS             138..1271
                     /gene="carA"
                     /locus_tag="PXG19_000934"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL6066249.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1374..4580
                     /gene="carB"
                     /locus_tag="PXG19_000935"
     CDS             1374..4580
                     /gene="carB"
                     /locus_tag="PXG19_000935"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL6066250.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4655..5446)
                     /locus_tag="PXG19_000936"
                     /pseudo
     CDS             complement(4655..5446)
                     /locus_tag="PXG19_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072249.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
     gene            5649..6647
                     /gene="yiaK"
                     /locus_tag="PXG19_000937"
     CDS             5649..6647
                     /gene="yiaK"
                     /locus_tag="PXG19_000937"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL6066251.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            6772..7137
                     /locus_tag="PXG19_000938"
     CDS             6772..7137
                     /locus_tag="PXG19_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6066252.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            7201..7680
                     /locus_tag="PXG19_000939"
     CDS             7201..7680
                     /locus_tag="PXG19_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6066253.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            7681..8958
                     /locus_tag="PXG19_000940"
     CDS             7681..8958
                     /locus_tag="PXG19_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL6066254.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            9061..10047
                     /locus_tag="PXG19_000941"
     CDS             9061..10047
                     /locus_tag="PXG19_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6066255.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            10121..11104
                     /locus_tag="PXG19_000942"
     CDS             10121..11104
                     /locus_tag="PXG19_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6066256.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            11235..12719
                     /locus_tag="PXG19_000943"
     CDS             11235..12719
                     /locus_tag="PXG19_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6066257.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            12914..13960
                     /locus_tag="PXG19_000944"
     CDS             12914..13960
                     /locus_tag="PXG19_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066258.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            13973..15082
                     /locus_tag="PXG19_000945"
     CDS             13973..15082
                     /locus_tag="PXG19_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6066259.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            15187..16077
                     /locus_tag="PXG19_000946"
     CDS             15187..16077
                     /locus_tag="PXG19_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL6066260.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIALLPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            16149..17618
                     /locus_tag="PXG19_000947"
     CDS             16149..17618
                     /locus_tag="PXG19_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL6066261.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         4958 a         3863 c         4149 g         4676 t
ORIGIN      
        1 agaaaatgaa ataaaaaaag aagaaagaaa taggcaaaat aactaatttt tacttgaatg
       61 caaacgtttg cttgattaaa cttagtcgcc tacttctaag gctacacaga taaaatttga
      121 tgattaggag taaaacaatg ttcaaaccag caattctggt tctcactgac ggttctgtct
      181 tttccggcaa atccattggt gctgacggtc acactatcgg tgaagtggta tttaacactg
      241 cgatgaccgg ttatcaagaa atccttaccg atccttctta tactaaacaa atagtcaccc
      301 tgacttaccc ccacattggc aataccggca ttaatttaga agataaagaa tcccccaatg
      361 tttgtgcctc cggcttaatt attcgtgatc ttcctcttct ccatagcaac ttccgtgcgt
      421 cctcctcact ttcagattat ctcattcaac aaaacattgt cgctattgcc gatattgata
      481 cccgccgttt aacccgaatt ttacgcgaaa aaggggcaca agccggttgt attttagtag
      541 gcgatgccac agaagagaat attgctaacg ctttggcatt tgccaacagt ttcggttcta
      601 tggctgggaa agatttggct caaagtgtca cctgcaatga attatataaa tggacagatg
      661 gtgaatggca attaggtaaa ggttatgtac cgcaacaaca aaccgagttc cacgtagttg
      721 cctatgatta cggtgtaaaa cacaacattt tgcgaatgct tgccgaacga ggctgtcgct
      781 taaccgttgt gccggcaaaa acctctgctg aagctgtgct tgcgttaaat ccggacggta
      841 ttttcctttc taacggcccg ggggacccgg agccgtgcga ttatgccatt accgcaatcc
      901 gaaaattatt ggaaacgcaa aaacccattt tcggcatttg cttagggcat caacttttag
      961 gtttagcggc aggcggtaaa accaaaaaaa tggtgtttgg tcatcacgga gctaatcacc
     1021 cggtacaaga tttagacagc caaaaagtgc tcatcaccag ccaaaaccac ggttttgaag
     1081 tagatgaatc cagcttacca tctaatgtgc gagtgactca ccgctcactg tttgacggca
     1141 cggtgcaggg gattgaactc actgatagac cggcgttttc gttccaaggt cacccggaag
     1201 ccagcccggg gccgaatgat gttgcctatt tatttgaccg atttgtcagt gagatgaaaa
     1261 aagtgaagta aggacgtacc tatgtgtgtc catcaagcgg tcgaaatttg caaaaaactt
     1321 accaaaaatg accgcttgta gcctgaaata aacgagataa aagagagccc aaaatgccaa
     1381 aaagaacaga cataaacact atcctaatta tcggtgccgg tccgattgtg atcggtcaag
     1441 cgtgtgaatt tgactactcc ggagcccaag cgtgcaaagc gttgcgtgaa gaagggtata
     1501 aagtggtgtt ggtgaactcc aaccctgcaa ccattatgac cgacccgaat atggcagatg
     1561 tgacttacat tgagccgatt gaatggaaaa cggttgaaaa aatcattgaa aaagaacgcc
     1621 ctgatgccat tttaccgact atgggcgggc agacagcgtt gaactgtgcc ttagatcttt
     1681 cgaaaaacgg tgtgctgaaa aaatataatg tagagctgat cggagctacc gaagacgcga
     1741 ttgataaagc cgaagatcgt ggtcgtttta aagaagcaat gactaaaatc ggcttgaata
     1801 cgccaaaatc attcgtttgc cacagttttg aagaggcctt agcagcacaa gagcaggttg
     1861 gctttccaac cctgattcgc ccctctttca cgatgggagg ctccggcggt ggtattgctt
     1921 ataatcgaga tgaatttatc gccatctgcg aacgtggttt tgaagcctcg cctactcacg
     1981 aattactgat tgaacaatcc gtactaggct ggaaagagta tgaaatggaa gttgtgcgtg
     2041 accgtgccga taactgcatt atcgtctgct cgattgaaaa cttcgacccg atgggtgtac
     2101 acaccggcga ctccattacc gttgctccgg cacaaacgct aaccgataaa gagtatcaaa
     2161 ttatgcgtaa cgcttcgctg gcggtattgc gtgagatcgg cgtggacacc ggcggttcaa
     2221 atgtgcaatt tgcgattaac cctgcaaacg gcgagatgat cgtcattgaa atgaaccctc
     2281 gtgtgagccg ttcttctgca ctcgcatcta aagccaccgg cttcccgatt gccaaagttg
     2341 cggcgaaatt ggctgtaggc tacacactca acgaattgcg taacgacatc accggagggc
     2401 tgattccggc ttcattcgag ccgactttag attatgttgt gaccaaaatt ccacgcttcg
     2461 cctttgaaaa atttgccaat gcagacgacc gattaaccac tcaaatgaaa tcggtaggcg
     2521 aagtaatggc aatgggaaga accttccaag agagtttaca aaaagccttg cgaggcttgg
     2581 aaaccggcat ttgcggcttt aacttgcttt ccgaagagcc tgaaaaaatc cgccgtgaac
     2641 ttgccaaccc cggaccaaac cgtattttgt atgttgccga tgcctttgga gcaggctttt
     2701 cattggaaga agttcaccac tattctaaaa tcgacccgtg gttcttggtg caaattcaag
     2761 acttagtact tgaagaatta gcgttagaga aaaaacagtt tagcgatcta gatgctaacg
     2821 aaatccgccg cttaaaacgc aaaggcttct cagacaaacg tatcgcacag cttaccaaag
     2881 tcagcgaaaa aatggtgcgg gattaccgcc atacttacgc tattctaccg gtgtataaac
     2941 gggtagatac ctgtgcagcc gagtttgcct cagatacggc ttacctctat tctacttacg
     3001 aggaagagtg tgaagccaaa ccgtctgatc gcaaaaaagt gatgatttta ggcggcggac
     3061 caaaccgtat cgggcagggg attgaatttg actactgctg cgttcacgcc tcgcttgctc
     3121 tgcgtgaggc aggttatgaa accattatgg tgaactgcaa ccctgaaacc gtttccaccg
     3181 atttcgacac ctccgaccgc ctctatttcg agccgctaac attagaagat gtactggaaa
     3241 ttgtgcgtgt agaaaacccg tggggcgtga ttgtgcatta cggcggtcaa acaccactga
     3301 aattagcgaa tgccttatct gatgccggtg taaacattat cgggacttcc gccgacagca
     3361 ttgatgccgc cgaagaccgt gaacgtttcc aacaaattct aaacactctc ggtttaaaac
     3421 agccggcaaa tcgcaccgcc cgtaatgcgt tggaagcggt ggcattggca aatgaagtag
     3481 gctatccgct ggtggttcgc ccatcttatg tgctaggtgg tcgggcaatg caaattgtgt
     3541 ataacgatga agagctaaac cgctatatgc gtgaagcggt atcggtttcc aacgacagcc
     3601 cgattttact cgaccacttc ctcaataatg cgattgaagt tgatgtggat tgcatttgtg
     3661 acggcgaaaa tgtactcatt ggcggcatta tgcaacacgt tgagcaagcc ggtattcaca
     3721 gtggcgatag tgcctgctca ctacctgcct attcgttaag cggtcatgtt ttggacgaaa
     3781 ttcgcaaaca aaccaacgca atggcgtttg ctctcggtgt gaaaggcttg atgaacgtac
     3841 aatttgcagt acaaaatgag gtcgtttatg tgttggaagt taaccctcga gccagccgta
     3901 ctgtaccgtt tgtcagcaaa gctaccggtc gcccactggc aaaaatcgct gctcgcgtga
     3961 tggctggtga aacccttgcc gacttaaatg cattagagga aattatccca agcaaattct
     4021 tcgttaaaga agcggtattc ccattcatca aattcccggg tgtggatacc attctcgggc
     4081 ctgaaatgcg ttctaccggc gaagtgatgg gcataggtaa tacctttgct gaagcgttct
     4141 tcaaagcaca actgggtgcc ggtgaacgaa ttccaaaagt cggcaaagtg tttatgtcgg
     4201 ttattgaaga gcataaacct gctttaattt acattgccaa acgtttccaa gaacaaggct
     4261 acggtttatg tgccaccttc ggcactgcaa acttcctacg gcaacacgga attgcagtcc
     4321 aaacggtaaa caaagttcgt gaagggcgac cgcatattgt cgatgcgatc aaaaacggcg
     4381 aaattgcgtt ggtaatcaac accgtcagcg gcgagcctga agtgattgcc gacagccact
     4441 ctatccgccg taccgccttg caacaacgtg tgcctattta caccaccctt gcaggtgctg
     4501 atgctatctc ctacggcgta aaacatatca atgagtttga tgtgtattca gtgcaggaat
     4561 tagaacaaaa ggctaactaa aataaagcta aaatgacaag cggtcagatt ttgcaaattt
     4621 tttacaaatt ctgaccgctt gtgtttgtag aggattattt agtaaattta tatgctaaat
     4681 cattccagcg taattcattt ttgagttgtg gtagctcggt attttggttg atatggataa
     4741 actcaatacc aaaatattca gcgaacattc gtagcatatc ggcatcaata tctaaactaa
     4801 atacactatg atgagcaccg ccggctagaa tccatgcttg agtacctaca taaaaatttg
     4861 gttgaagctt ccaaaaagca tgcccaactg gtaaatttgg cattggattt ggtgaggcga
     4921 tagcgtctaa atccgcaaca accattctaa aacggtctcc catatctaca acggttgcat
     4981 tcactgcttt tcccgcctta ctactgaaaa ttaagcgaac aggatctgcc ttaccgccaa
     5041 tacctagcgg tcgaatggct aatgttgatt tctctttggc aatagacgga caaacttcaa
     5101 gcatatgagc ccccaatacc acttggtttt gttcatctaa atcataggtg tagtcttcca
     5161 taaaggaaga accgtttggt aagccataac ccatcacttt cacttcacgc acaagagctg
     5221 cggttttcca acctccttca ccaccaaatc cgtagccttg ttccattaaa cgctgaacag
     5281 ccaagcccgg taattgttta atcccattta gattttggaa attatcagta aaagctttaa
     5341 atccaccatt atctaagaat gtttttaagc cgatttcaat acgagcagaa tatgcgagag
     5401 attctcttgc tgaaccattt tcttgcaagc tatcctcaac attatacaag cggtcagatt
     5461 ttgcaaaaaa atgaccgctt gttgccattt ctaaagtgtg atctacctct caaatttaca
     5521 aaatttttta taacatattg atttaaaatg ttttttatat ttttccttta attgacttta
     5581 atttgtctta agagtaactt ataaaacgtg attttactat ttgaaatatt gaggtattca
     5641 agatgactat tcgagtttcc tatgaagaat taaaagctca atttaaacgt gttctgttgg
     5701 ctcgcaatgt gcgtgaagag attgccgaag agtgtgccac tgtgtttgcc gacaccactc
     5761 aagcgggtgc ttattcacac ggggtaaacc gtttcccacg ctttattcag cagttagaga
     5821 acggtgatat tgtgccggaa gccgtgccga ctaaagtgct ttcactgggg gcgattgagc
     5881 agtgggacgc tcaccaagcc atcggtaact taaccgcaaa aaaaatgatg gacagagcaa
     5941 tggagcttgc atctgaaaac ggcatcggcg tagtggcgtt acgtaatgca aaccactgga
     6001 tgcgtggcgg ttcttacgga tggcaggcgg cagagaaagg ctatatcggg atctgctgga
     6061 cgaacgccct tgcggtaatg ccgccttggg gggcgaaaga gtgccgtatc gggactaacc
     6121 cgttaatcat tgcggtgccg actaacccaa tcacgatggt ggatatgtct tgctcaatgt
     6181 actcatacgg aatgttggaa gtgcatcgcc ttgctggtcg tcaaaccttt gtcgatgctg
     6241 gttttgatga tgacggcaac ccaacccgtg atccggcaac ggtcgagaaa aacctccgtc
     6301 taatgccgat gggcttctgg aaaggttcgg gcttatcgat tgtgttagat atgatcgcca
     6361 ccttgctctc taacggtgaa tccactgcgg cagtcaccga agataaagac gatgaatatt
     6421 gcgtgtcgca agtttatatc gctattgaag tggatcgctt aattgacggc aaaaccaaag
     6481 acgaaaaact caaccgtatt atggaatatg tgaaaaccgc agaacgtgcc gaccctgatg
     6541 tggcagtacg tttaccgggc cacgagttca cccaaattct agccgataac aaagccaacg
     6601 gcattccggt ggatgacacc gtttgggcga aattacaggc gttgtaattg caaattgacc
     6661 ggtagggtgg gcgtaagccc acgcattaga cacaatcata agatgacgtg ggcttacgcc
     6721 caccctacaa gcggtcattt ttccgcagaa ttttacaaaa cggaggtatg aatgtttttt
     6781 ggtcatattt cacaagttaa agcgaatcga tacccgccgg cgatccaaat tgcgttgaac
     6841 tatctgaaaa ataccgattt tgatgcgatg gaagcagggg tttacgaact caaaggcaga
     6901 caaatttatg tgcaggtgtt ggatttgaac accaaatcga aacacgaatt tcagccggaa
     6961 gtgcatcgca attacctcga tgtgcagtat ctacaccgag gcaaagagat aatggctgcg
     7021 gcggtggata ccggcaccaa tccgattgcg atggaataca accctgagcg ggatattcaa
     7081 tattatcaat ccgttgccaa cgaaaatgaa tttcgctgcg ttgaaggcaa tttttgacgg
     7141 cacggaaacc attcgcaaag tggtggtaaa aattgcgatg agcgaaattg aggagcaacg
     7201 atgaaagcct tagctcaatt agtcggaaaa ctgttagaaa tcttggtggt ggtgatttta
     7261 tccgcaatgt cgattttggt tttcgtcaat gtggtactac gttacggttt taacagcagc
     7321 attagcgtga ccgaagaggt gtctcgctat atgtttgttt ggttggcgtt tttaggggcg
     7381 gtgttggcat ttagcgaaaa tcaacacgtt aaagtcacaa tgctgaccga taaattatcg
     7441 ccaacggctc gtaatatctt aagcgtagtc acagatttag cgatgttgtt ctgttgctac
     7501 ttaattgtgg acggtagctg gattcaattt aacctcaacc tgaataactt tgccccgatt
     7561 tcaggcttac cgcaaggcat cactttcctt gccagcacag tggcaggggt attaatcggt
     7621 ttattaatta ttgcccgcat tgtggcaacg gttggcgtga ttgcaaaagg agaaaaatag
     7681 atgactgtgg taatttttct ttccgtcttg cttggctcga ttttattggg cattccggta
     7741 gctttcgccc tgttggtctg cggtgtggcg ttaatgttgc atttagatct gttcgatgcc
     7801 caaattttgg ctcaacaaat tgtgagcggt gcagacagtt tctcgctaat ggcaattccg
     7861 ttcttcattc ttgccggtga aattatgaac gagggcggtc tctccaaacg gattatcgac
     7921 ctgccgatga aattagtcgg tcataaacgg ggcggtttag gttttgtagc aattttagcg
     7981 gcgatgatta tggcaagcct ttccggttcg gcggtggcgg ataccgcagc ggtagtcgca
     8041 atgctactgc cgatgatgaa aaccaccggt tatccgattg accgctctgc cggtttaatc
     8101 ggtacggcag ggattatcgc cccaatcatt ccgccaagca ttccgtttat cgtatttggt
     8161 gtggctagtg gcgtgtccat taccaaactg ttcttagccg gtattttccc gggcattatg
     8221 atggggatct gcttggctgc cctttggtgg tggcaggcaa aacgtttgga tttaatgacc
     8281 ttctccaaag cgaccaaaga agaactttgc atttcattta aaaacagtat ttgggcgtta
     8341 ttgttgcctg tcattattat cggtggtttc cgctcgggaa tgttcacccc aaccgaagcg
     8401 ggtgcggtcg caactttcta tgccttgatt gtttcactgt ttgtttaccg tgaaatgaag
     8461 ttcaaagatt tatacaaggt agtgttggcg gcagcgaaaa ccacggcagt agtgatgttc
     8521 ttagtggcag cggcaaatgt gaccggctgg ctgattaccg tagcggaatt accgatgatg
     8581 ctcaccgagc tgttagagcc gttaattgaa agcccgacca cactcttatt ggtgattatg
     8641 ttagcggtgt ttattatcgg aatggtgatg gacttaaccc caaccgtgct gattttaacg
     8701 ccggtattaa tgccgttggt ggaagaggca ggcattgacc cggtttactt cggtgtgctg
     8761 tttattctta acacctccat cggcttgatt acaccaccgg tcggcaacgt gctaaacgtg
     8821 attaccggcg tgtcgaaact gccgttcgac caagcggcta agggcgtaat gccttacctc
     8881 gtaatgatga tttgtttact actgttgttc gtgttcttcc cgtcactggt gttagtgccg
     8941 ttaagctgga tgcagtaatg gtttgaaccg aaacaagcgg tcgaattgac gcaaaaattt
     9001 gcaaattttt ttggcaaaac agaccgcttg caactcaatt tttaatcaca ggagaaccct
     9061 atgaaattat ttaatttaaa aaccttattt gccttagtgg caggcgttgc ggtaatgagc
     9121 ggctctgcaa tggcagaaac ctcactgcgt tttggttatg aagccccacg ttccgatacc
     9181 caacacatcg ccgccaaaaa attcgatgaa ttattggcag caaaaaccaa aggtgaaatt
     9241 aaattaaaac tgtttccgga cagcacctta ggtaatgctc aaacgatgat cagcggcgtg
     9301 cgtggcggta ctatcgacat tgaaatgtcc ggctcgccaa actttaccgg cttagagcca
     9361 aaactaaatg tgattgatat tccgtttatt ttcaaagatc gtgaacacgt ttacaaagta
     9421 ttagacggcg aagttggtca aggcttatta aaagatttag aagcccaagg cttaaaaggc
     9481 ttagccttct gggacgttgg cttccgtgct ttctccaact caaaacaccc tgtgaccaag
     9541 ccggaagaca tcaaaggctt aaaagtccgc accaaccaaa acccgatgta cattcaagcc
     9601 ttcaccttac taggcggcaa cccggtgcca atgccacttt ctgagcttta caccgcactc
     9661 gaaacccgtg ccgttgatgc ccaagaacac ccaatcggca ttttctggtc ggcaaaactg
     9721 tttgaagtac aaaaacattt aagtttaacc aaccacggct acaccccgtt aatcgtggtg
     9781 atgaacaaag cgaagtttga cggcttagct cctgaattac aaaccgcatt agttgaagcc
     9841 gcaaaagaag ccggtcaatt ccaacgtgat ctcaacgtga aaaacgaaaa agagatcatc
     9901 gaaaaattac gcaaacaagg catcgaagtg atcgaacaag tggataacgc cccgttcaaa
     9961 gcagcgattg aagcggaagt ccgcaaagct ttcgtggaaa aacacggcga tgaattattg
    10021 aaaaaagtgg atgcgttagc acagtaattg actttatttt agtctaaagc tccctccgtt
    10081 tggggggagt tgttgtatag actctactat aggagagact atgaaactgt ttaatttaaa
    10141 aactttagcc gctttcgttg ccggttttgc actgttttca accgcacaag cagaaacctc
    10201 attccgcttt gcgtatgaag ctcctcgttc tgatactcaa catattgcag cgaaaaaatt
    10261 taatgatttg ctgcaagaaa aatcccaaaa agggctgaaa ttaagcctct tccctgatag
    10321 cacgctcggc aacgcacaaa cggcgattag cggtgtgcgt ggcggtacta ttgatattgc
    10381 aatgtccagc tcctctaact ttaccgggtt agaaccaaaa ctgaatgtga ttgatattcc
    10441 gtttattttc aaagacagag accacgccta taaagcctta gatggagaga ttggtcaagg
    10501 tttattaacc gcattagagg ctcacggttt gaaagggttg gcgttttggg aagttggttt
    10561 ccgagcgttt tccaactcca agcacccgat caccaaaccg gaggatatta aaggcttaaa
    10621 aatccgtact aaccaaaacc cgatgtatat tcaagccttc tctattttag gtgcaaatcc
    10681 ggtgccaatg ccgctttcca agctttacac tgcactggaa accaaagcgg ttgatgccca
    10741 agaacaccca atcggcattt tctggtcggc aaaactctat gaagtacaaa aatatttcag
    10801 ctttactaac cacggttaca ccccgttaat tgtggcgatt aacaaagcga aatttgatgc
    10861 actgccagcc gagcaacaaa ccgcattagt tgaagcggca aaagaagccg gaaaatacca
    10921 acgccaactt aacctagaaa atgagcagaa aattatcgac tcgctcaaaa aagcaggtat
    10981 tgaatttgtg gataacttag ataccacacc gttcaaagat gccgtatcgg ctgaaacccg
    11041 caaggcattt atcgagaaaa acggtgatgg cttagttaaa gccattgatg cattggcgaa
    11101 gtaaaaatag agctacaaag tgctcggtta aactaacctc acacgaatcg tgtgaggtac
    11161 aagcggtcaa aatccgcaaa atttttacac atctttcctc aaaggaggaa caaatggcac
    11221 agcccatttt aagtatgcag cacatcatca aacgctttgg tagccatacg gcggtgaatg
    11281 atgtcagcct tgatatccac tcaggcgaga tcgttgcctt actcggtgaa aacggtgcag
    11341 gtaaatcgac cctaatcaaa atccttgccg gtatttatga ccgtgacgag ggtgatattc
    11401 ttttccataa ccaaaaaatc caatctgccc acgctattga gaaaggcaac aaaaagccca
    11461 tcgcttttat ccaccaagat ttaggcctaa tagaatggat gacgattgcc gaaaatatgg
    11521 catttgtaat ggggttccct cgcaaatttg gcttgattga ctgggcgaaa gtgcgagagc
    11581 agtcgcaaaa agcccttgat tttgtaggca ttaaactctc tgccgacact cgagtgtttg
    11641 atttaagccg taccgaaaaa gccttactcg ccattgcccg tgcgattgcc gtcaatgcag
    11701 aaatcttggt tttagacgaa cctactgctt ccctacctgc ctctgatgta gagcatcttt
    11761 tcactgtgtt aaaccgctta cgttcccaag gtgtgggaat gatttatgtg acccaccgtt
    11821 tagatgaagt gatcgccatt tccgaccgca ttttggtgat gcgggacggt ttcccggttg
    11881 cagaagggca aaccaagctc tatgacgtca aaggcttggt caaagcgatt gtaggcgaag
    11941 agagccgtgg cagacagcgg gtggatttac caaccgatac tcctgaaatt ttaagcctgc
    12001 aaaatgtcgt ggttggcgac accggcccgg tgaatttccg tctgcacaaa ggtgagatga
    12061 ttgcccttgc cggcttgcgt ggagcagggc aggaagaaat cggccgctta ttatttgggg
    12121 agcgaacctt agacaaaggc gaaattcagt tagacaagcg gtcatattct gctaaagatc
    12181 cgcaagatgc gatagccaaa ggtgtggcat tggttgcggg agaccgcacc cgtgaaagcg
    12241 tgtttatgtc aatgactacc agtgagaacc tgtttatcaa cccggtacta agcggtcatt
    12301 caccattaaa acgctactcc cgccgtgaag agtggggtga gagctggtac aaattccaac
    12361 tattcgatat tcgtccgaaa aatttgttta ttgatgccag tgcgttatcc ggtggtaatc
    12421 agcagaaaat cgtgttggca cgttggatgc acctcaatac gcctgttctg attttagaag
    12481 acccgactgc cggcgtggat gtaggagcaa gggcagagat ttacgacttg ctcaacaaag
    12541 cccttgcaga aggggtcgca attattgtga tttccaccga ctttgaagag atcgctcatt
    12601 tgtgtaaccg agcattagtc ttcaaccgag gggaaattgc cggtgaacta ctgaacgaag
    12661 aggtgacttt cgccaatttg ctggcgttgg catcggatag tcagtcgaaa aaacaataac
    12721 ttactctcgc ccgcttgcgg gagagagaca gctaaaaata gcgtcaggct atttttagca
    12781 gagagagggt aaacaagcgg tcatttttct taaaaaatat tgcgaaccct ctccctccga
    12841 aagcctaacg gctttctcct ccctctcccg caagcgggcg aggggaaaat gcagaatttt
    12901 aacggagtaa tttatggctc aaacaaacat caaatcaacc gcactggaac aaccggtatc
    12961 tatcgcccgt gacggtttta tggcatggtt ttcacaaatg tccactcgtt atggcttact
    13021 gtggttatgt gtgttattgg tgattatttt ctcacttacc accgaatctt tcgcctcaat
    13081 gctgacatta aatgcgattt tagaaagtaa atcgaaaatt gccctacttg ctttggcagc
    13141 cacaactaca atgattgtcg gcaaaatcga cctgaacgtg ggtttcggta ttgtgttgtg
    13201 gcacattctt gtgattactc tgcaagtcca atacggcttc tcgtggtata tggcgatctt
    13261 aatcgtgtta gtgattgccg ctctttacgg cttgctgaat gggattttag ttgctcttgc
    13321 tgatatcgat agctttgtgg caacacttgg ctcaggcaca gtgctttatg ccgtagcact
    13381 ctggcactcg ggcggtcgcc aaattgtcgg ggatttaccc gatgaattta tcgcactcaa
    13441 cagcacagaa attttcggta tcccgatttc tgctttctat gtgctggcag tggctatcgt
    13501 aatgtggttg gtgacagaac ataccccgac cggtcgttgt atgtatgcgg ttggtggcaa
    13561 cccaacggca gctcgcctaa atggtatcaa tattaaaaaa tacaccattg tgccgtttat
    13621 tgtctctagt gtaatcactg ctttcacagg cgtattgatc tctgctcaac aaggcgttgg
    13681 tcaggcaagt gtcggtatgg actacttact gcccgcattg gttggggcat tcttagggag
    13741 taccactatt cgcccagggc gtattaacgt atggggaaca gtggtgggga ttgccattct
    13801 tgccatcggt atttcaggta ttcaacaatt cggtggagcg ttctgggttg agccactctt
    13861 taacggtgca acactgttac tttccatcac tattgcaggc tatgcccaac gcaaacgctt
    13921 gttaaatcaa aaagctgtac agaaaaaatc gaccaactaa gaggatttga ttatgaaaaa
    13981 agcatttcgt acaaccttaa ctgcaatcgc aaccttaact gctattgctt tcggaaataa
    14041 tgcgtttgcc aatgacgacc cgttcgtaca agaagcaaaa cagcttgtcg cagcagctac
    14101 ggctaagcaa gaaaaatggg acggaccgac aaccggccct caattacaaa aagagaaaac
    14161 tgtgattttt attgcctctg atatgaaaaa cggtggtgta cttggtgtga ttgacggaat
    14221 gaaagaagct gttggcgtaa cgggctggaa gttagatgta ttagacggtg caggtacggt
    14281 aaacaaccaa ctcgccgcac ttaaccaagc gattgcccgc aaaccggatg cgattgtgat
    14341 tggtggctgg aacccgaatg tggcgaaaat cccactacaa aaagcgacta aaaacggcat
    14401 taaacttgca gcttggcacg caacaccgga gccgggtgcg attgataaat acggcatttt
    14461 ctacaacgtg acctctgact cagacgaaat tgcacgctta tcggcaatgc ttgcggtggc
    14521 agaatctaac ggtaaggcaa aagcgattat tttaaccgac tcgctatatg aaattgcgtt
    14581 acgcaaagcg aacgtcatga aagaagttat cgaaaaatgt aaagagtgta aggtgttaga
    14641 gtttatcgac acgccattgg cggatacctc aagccgtatg cctaacctca ctttcagctt
    14701 actgcaaaaa tatggcgacg atttagagta tgcgttggca attaacgatc tctactttga
    14761 ctttatggct ccgtctttac gcaccgctgg taaagataaa ccgtttagca tttccgcagg
    14821 tgatggctca gtaacggctt atcaacgtat tcgcaatggt gataaacagt ttgcaaccgt
    14881 ccctgagcca cttaacttac acggctggca gttagtcgat gagctaaacc gtgctttcgc
    14941 taacgaaaaa ccgtctggtt atatcacacc ggctcaccta gtgactaaag aaaatgtggc
    15001 gtttgacggt ggtgaaaaca acctgtatgc cccacaaaac ggttacaaag gcgcttacaa
    15061 agcgatttgg ggcgtgaagt aatgacgtag gggcaaataa atatttgcct cgaacaagcg
    15121 gttgtttttt gcaaagattt tgcgaaattt aaccgcttgt cataaaaaat agagagggta
    15181 atacaaatga gcaataaatt tatccccaaa atctccaacc ctcgttttaa tgagctggtt
    15241 gggaatacgt ttgaacttga agagcttttt gataaggcaa tctgggcaga agggccggcg
    15301 tggagcaagc cacaacaagc cctctatttt agtgatgtaa aaggttgcac aatgtaccgc
    15361 tggacagagc aagatggtac acaggttttc cgccagccgt cttatttttc taacggcaat
    15421 gcgtttgatg caaacgacaa cttgattacc tgtgaacacg gcaatcgagg tatcagttta
    15481 accacgccaa gcggtgaata tcgttttttg gtcggtcaat tagacggaaa acgactgaac
    15541 tcacccaatg atgtggtggt aaaatcagac ggcatcattt ggttcactga tccaccttac
    15601 ggtattttgt cggataacga aggcaaacag tcgccaagcg aaattatcgg ttgttatatt
    15661 tactgctatg atccgaaaac cgacaagctg aatattgcaa ctttcaacac gatgcgacca
    15721 aacggcttgg ccttctcgtc agacgaaaaa caactctttg tggcagatat gtcgagcgtg
    15781 gaatttgacg aagatggctt acaccactta gtcgtatttg atgtggacgg taataaacta
    15841 aaaaatcgcc gagatgtggc ggaaattagt cccggcattc cggacggctt ccgaattaaa
    15901 caaaacggcg taattttctg ctcttgtgaa gagggaatta ttgctctttt acctgacggc
    15961 acggagctgg gacgatttgt gctgggtaag ctaacctcaa attgtagctt tggcgatgat
    16021 gaacaaacac tgtttattac ttgttcgaat agcgtttatc gtttaacaat taaatagcag
    16081 aatgcattaa gtgcgtctgt tgtagcatta caagcggttt ctttttcaaa attttttaca
    16141 aacaaataat ggataacaaa atgaactaca cactcggcat tgattgcggt gggactttta
    16201 tcaaagccgc tctttttgat acacaaggta atattcaagc ccttcatcgt gaaaacgttt
    16261 cggtaatcag tgaacaggca ggttatgcag agcgtgatat gtcacaactc tgggctattt
    16321 gtgcggaagt agtgcgttca accattgaaa aaagtggggt aaacccagcg gatattaaag
    16381 cagtagggat ttccgctcaa ggcaaagggg cgtttttact ggataagcag aatcgaccgt
    16441 tggggcgtgc gattttatct tccgaccaac gttcccttga gattgttaaa caatggcagg
    16501 ctgaaggcat tccgcaacaa ctttacccga ttacccgcca aactctttgg acaggacacc
    16561 ctgtgtcgat tttgaagtgg gtgcagcaaa atgaaccgga gcgttatgca caaatcgggg
    16621 cggtgttgat gtcgcacgac tatttgcgtt tttgcttaac cggtgagttg cattgcgaag
    16681 agaccaacat ttccgaaagc aatctttaca atatggaaaa aggcgaatac gaccaacagt
    16741 tagccgattt gttgggaatg ccggatgtgt tggagaaatt accaccagtg attgaaccga
    16801 ataaaatttc gggatatgtg actgaaaatg ccgccaaatt aaccggttta gcggtgggta
    16861 cgccgatagt cggtggcttg tttgatgtgg tttctaccgc acgttgtgcc aatttagatg
    16921 acgaaaccaa actgaatgca gtgctgggaa cgtggtcggt ggtgagcggc attaccgatc
    16981 atattgatgc aagccaatca ttaccttttg tttatgggcg ttatgccgag gcagggaaat
    17041 ttatcgtcca cgaagcaagc ccgacttctg ccggtaattt agagtggttt gtgaatcagt
    17101 ggaaactcga ttatgtgaaa atcaaccaag ctgttgccca attaccgccg gcggcaagct
    17161 cggtgctgtt tgtgccgttt ctgtatggct caaatgcagg cttaggaatg caagccggtt
    17221 tctatggtat gcaagcccac catacccaag cccatctctt gcaggcaatt tacgaaggag
    17281 tgttgtttag cttgatgagc catttaaacc gtatgtttat ccgctttcca aaggctgacg
    17341 tgctgcgagt taccggcgga ccggtgaaat ctaaagtttg gatgcaaatg ttggccgatt
    17401 taaccggaat gcggcttgaa ataccacaaa tggaagaaac cggctgcttg ggtgcggcat
    17461 taatggcaat gcaaggggtt gggctggata taagccaagt tcaagcccta aataatgaaa
    17521 tgcaggtgtt tgagccaaat ccggaaaatt atgcggctta tcagacgaaa tatcagcgtt
    17581 accaaaaatt aactgaagca ttaaatacaa tgatttaacc tgaatttatg cttttacaag
    17641 cggtaa
//
LOCUS       DANMGB010000038        17467 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.038, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000038 DANMGB010000000
VERSION     DANMGB010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17467
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.038"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..550
                     /locus_tag="PXG19_000948"
     CDS             <1..550
                     /locus_tag="PXG19_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDL6066262.1"
                     /translation="KVHLSHLRVLFQDIEDYMIHEGYLHGIPQTWKHLVSHSEQWHQH
                     ILEEQRRDQHILEEQRRENDEAHQALLSTSWSSPIDICYINEIEFQPLTTGQMLFDEG
                     QRMRHCIFTYIDICSEGRYLAFSVKIANESATLGLIKHRGNWKIEQFRYACNIAVCEP
                     MILAAAQKLCKLLNKQSALPQN"
     gene            646..1278
                     /locus_tag="PXG19_000949"
     CDS             646..1278
                     /locus_tag="PXG19_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066263.1"
                     /translation="MKTKISLIAVFMLGLSGCVHQQNTAQNSDEITPMPDSLLKPQMQ
                     PLPPQDRIVSKDIYHEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVPNTKN
                     RFTANVQQGLRTTLTNTGLELCFPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDITRTICFKARESSFQNPHKPAVAIQRQQLKPRSLRNN"
     gene            1290..2027
                     /locus_tag="PXG19_000950"
     CDS             1290..2027
                     /locus_tag="PXG19_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066264.1"
                     /translation="MKRNTINIWLAVLSSVTTNALAQTTSIESSTQTLSQQQSQHQQS
                     QLSDSLKQAKEWGLTIEEWNRYTELMKGERGMWSPNLDPLTALGIEARTAEEREKYAR
                     MLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSIGRVIYFTRFDNCDS
                     CKSDLSKILSYANSQTPLDIYIVGQNISDNDIRKWAAENNIDPIKVSKKLITLNHDKG
                     YWFQYSLGKMPAAYQIKQDGEWQSLVY"
     gene            2006..2770
                     /locus_tag="PXG19_000951"
     CDS             2006..2770
                     /locus_tag="PXG19_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL6066265.1"
                     /translation="MAISRLLIVITLFAVGISDAKSKPFTGFGTEIDSYIRIAAQRYQ
                     ISEPMLRGLIKMEDGWYGNISPTGATGVGQFTVGTWNWLSETERGKQLGMRLITGKNK
                     GTYADPRRDKYTNTLATALLARWHIEQFHLRRIPATDENLYMAHNIGLDSLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMLVSKQGHIHTGVSAFVY
                     PTSEMGKSVKWVEPDNKIIWVEPKSAMIWVEPTNTP"
     gene            2779..3285
                     /locus_tag="PXG19_000952"
     CDS             2779..3285
                     /locus_tag="PXG19_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6066266.1"
                     /translation="MQHKIKMLLLSLCISHSVWGDLTVIADFGGESAVRFYEALQPEH
                     DENAPNYPNSIPASVSEADILPVVSHKLSPGIIETKQFDLTGIQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVRTLAELNQLREIVPEIIMLPIPGDDLAERIGIAHYPAL
                     ITETGVSQ"
     gene            3285..5489
                     /gene="traD"
                     /locus_tag="PXG19_000953"
     CDS             3285..5489
                     /gene="traD"
                     /locus_tag="PXG19_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL6066267.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAIVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHQNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTRLTSKDSRWNPVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTPDERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNEGLPGDMGRKTKLVKINLHCD
                     EFNELMGDEFIPLINKGGGAGVQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALLDGSKLWKIRMPLPAVDKDDMMPQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYNSRIDNQVDNFGIDEPYDIDEEENDDE"
     gene            5482..5835
                     /locus_tag="PXG19_000954"
     CDS             5482..5835
                     /locus_tag="PXG19_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6066268.1"
                     /translation="MSSTKMREENRTNLLDLPNKYRNFDGEFSASCGLDNAEELLIHS
                     QSYFIEWFQQGYSFHQFAEKFAHQGLSLWSADEISMRNTDKSKDVFAFYLAFDHNPSG
                     YILVQCQLDREDSLQ"
     gene            5832..6527
                     /locus_tag="PXG19_000955"
     CDS             5832..6527
                     /locus_tag="PXG19_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL6066269.1"
                     /translation="MSEGAKPRRKSGLISLILGKINMLLAAITVSLIFSIILEWVGIA
                     FWWPEEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATLIIENVYNWLFVYTGIKE
                     WLTSPGNGSMEQWAYHYGRAYIESVIYVVITFIIRLIIIIFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVVYLSIPFSIHPNFILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(6557..6916)
                     /locus_tag="PXG19_000956"
     CDS             complement(6557..6916)
                     /locus_tag="PXG19_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066270.1"
                     /translation="MRYLALFPVFLPSIAYPLPQAHKVGDICHAENAPYNYGGLWELS
                     LRGNLVCNYWQFLGDDERKRIESQLDEYGELPLWYSSERETEEDEYPQYWEVEDWDGD
                     DWDIETENEGTNTITDE"
     gene            7114..7440
                     /locus_tag="PXG19_000957"
     CDS             7114..7440
                     /locus_tag="PXG19_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL6066271.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPAFASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHRDIETVKKGIQQYINPSRALPRDPNVLRTLSEDY
                     SKLRGQ"
     gene            7440..7673
                     /locus_tag="PXG19_000958"
     CDS             7440..7673
                     /locus_tag="PXG19_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066272.1"
                     /translation="MSYSPVDAFSAASGIDPFRLKLMIAIIFLSMLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLVCVTYFFIY"
     gene            7688..8077
                     /locus_tag="PXG19_000959"
     CDS             7688..8077
                     /locus_tag="PXG19_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL6066273.1"
                     /translation="MSRIKSLTKHLHSRYLAVMLVFWGTIQHAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEILWIVGKSIITLFAVLLAAGAIFVVVKALISIYNEATSENGKKGWG
                     HFIVALIIGFIVIFFCLWLVKLAVGLF"
     gene            8100..8465
                     /locus_tag="PXG19_000960"
     CDS             8100..8465
                     /locus_tag="PXG19_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL6066274.1"
                     /translation="MPEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGVVAAVKRGKPEAYLNRLIEKKMDDLFN
                     GHKFIRREGFWSIRRYKRK"
     gene            8469..9113
                     /locus_tag="PXG19_000961"
     CDS             8469..9113
                     /locus_tag="PXG19_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066275.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITALKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTVFSEDNWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDIDSVKNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            9113..9994
                     /locus_tag="PXG19_000962"
     CDS             9113..9994
                     /locus_tag="PXG19_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066276.1"
                     /translation="MKRLPILFASLLISFSGSSFADVLMKWERKPLPIALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVSTGEIFLFDIVSA
                     TKVANPEESIRMVFDSAVEKQSFSTNRDDEPDLSLTGTRPQLPIPAALTRYAAQSLYA
                     PLRAVEPLEGVRRVAHRLPKKITTLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNSQ
                     ITLDPRELQGQFYAATFQHNWLGGYGGNEDTTTLYLVTEGYANNALIPETHPVKPVGK
                     KVKKTTKVETKPTQSAK"
     gene            10006..11460
                     /locus_tag="PXG19_000963"
     CDS             10006..11460
                     /locus_tag="PXG19_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066277.1"
                     /translation="MKANKALFVILGIVFTLVGGIVYALFWRSDTPQEPTEQEILDIS
                     IKDLTPEQVRSMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     SDAVNNETRKLQEQIADLKMQLFDMATHVNNKSTAQESTPQAEAQPSMTTNKGFGTAG
                     DKLPIGGASMPNVDIGGMYWVEPSDQIGLDAGGKAVSGNTLATKFGFPNDFKGGQTTG
                     NTEKKGLPFFPETDVVTGSQGTTGNSRGKNQITPVYTVPSNSTFLDSVAMTGLIGRIP
                     IDNKVSDAYPFKVLIGRENLIANGIELLDVEGAIVSGTATGDWTLSCVRGDVKSMTFV
                     FNDGRIVSTTNKGNSENIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGNSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVAIHIEKEIEIDYNSKGRKVKYGNTSTNTQLD"
     gene            11473..11871
                     /locus_tag="PXG19_000964"
     CDS             11473..11871
                     /locus_tag="PXG19_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL6066278.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            11871..14708
                     /locus_tag="PXG19_000965"
     CDS             11871..14708
                     /locus_tag="PXG19_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL6066279.1"
                     /translation="MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGE
                     VQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYLNQHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS
                     PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKS
                     NDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDGQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLEMFCTGVNGQFFNREGEIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERRQLMMQHGYSELDAALEVAARIDKARGIA"
     gene            14708..15136
                     /locus_tag="PXG19_000966"
     CDS             14708..15136
                     /locus_tag="PXG19_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066280.1"
                     /translation="MMKQHYRLFNVGPQKSSLGIVSSAVETQLLGFCEQIRQLIGIGK
                     QITLFPHRVVQNHWAIELSGEKGSVHLLLNVTGRSLLPTSNYREWPARLVIEIADHVD
                     AYWFATFLAQQLDLKSNLFFLSTSIVDNSMHNEVTDTNEA"
     gene            15126..15443
                     /locus_tag="PXG19_000967"
     CDS             15126..15443
                     /locus_tag="PXG19_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6066281.1"
                     /translation="MKPDTTMPKMKKVRAVLKTTLIIIGIILLLLIVGWLAMTYFPTT
                     NFQAWFYETRYAWLGWRFVLYGVIWFLMVKLNRRGQMPLKARLMILSAIPLIEGINLL
                     YLL"
     gene            15454..16971
                     /locus_tag="PXG19_000968"
     CDS             15454..16971
                     /locus_tag="PXG19_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL6066282.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFILPLIFVLIG
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRIPTSPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(17024..17404)
                     /locus_tag="PXG19_000969"
     CDS             complement(17024..17404)
                     /locus_tag="PXG19_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066283.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
BASE COUNT         5348 a         3355 c         3669 g         5095 t
ORIGIN      
        1 aaaggtgcat ctttctcatc tgagagtgct ttttcaagat attgaagatt acatgataca
       61 tgagggatat ttacatggta tacctcagac ttggaaacat ttggtttcac atagcgaaca
      121 atggcatcaa cacatattag aagagcaacg aagagatcaa cacatattag aagagcaacg
      181 aagagaaaat gatgaggctc accaagcact tttatctaca tcttggtcat ctccaattga
      241 tatttgctat atcaatgaaa ttgaatttca acctttgacg acgggacaaa tgttatttga
      301 tgaaggacaa cgtatgaggc attgtatttt tacatacata gatatctgct cagaggggag
      361 atacttagct ttctccgtaa aaatagccaa tgaatcagct actttaggat taataaaaca
      421 tagaggaaac tggaaaattg aacaatttcg ttatgcctgt aatattgcag tttgtgagcc
      481 tatgatttta gcagcagctc aaaaactatg taaattactt aacaaacaat cagccttacc
      541 tcaaaattaa ttttatctcc caatcaacaa tagaataaat cattcaaaat cagcaatgac
      601 ttcgccatag ttggcttaga ttcctttcac acttggagag attaaatgaa aacaaaaata
      661 tccttaattg ctgtttttat gcttggttta agtggttgtg ttcatcaaca aaatactgct
      721 caaaacagtg atgaaatcac acctatgcct gattcattac taaaacctca aatgcaacca
      781 ttacctccac aagaccgtat cgtgtccaaa gatatctacc acgaacaaac tacctcgaat
      841 accgaagtag tacgtgacgg acgttacacc ttaatcagta ttgctcctga ggaaggacaa
      901 aaatatctgc ttgaacaagt ggtatcggta aaagtgccta atactaaaaa tagattcaca
      961 gccaatgttc agcaaggcct ccgtacaaca ttaaccaata cagggttaga actgtgcttt
     1021 ccaccaatag gtgaacaggg caatgcagtt caaacgcttt ttactcgccc acttccgaaa
     1081 gtccattacc aattcggtcc gatgaaatta tatgaagctc tacaaatgat cgcgggaccg
     1141 gcttatgaat taacacttaa tgatattact cgtacgattt gctttaaagc tcgggaaagc
     1201 tcattccaaa atcctcataa gcctgctgtt gctattcaac ggcaacaatt aaaaccgagg
     1261 tcattgagga ataattgagg gaaactccaa tgaaacgaaa tactatcaat atatggttag
     1321 ccgtactctc ttcagtgact acaaatgctc ttgctcaaac tacatcaata gaaagtagca
     1381 cacagacctt atcgcaacag caaagccaac atcaacaatc acaattaagt gatagcctaa
     1441 aacaggcaaa agagtgggga ttaaccattg aagaatggaa tcgctacacc gaattaatga
     1501 aaggtgagcg tggtatgtgg tcgccaaact tagatcctct tacagcatta ggtattgaag
     1561 caagaactgc tgaggagaga gaaaaatatg ctcgtatgtt agcaaaaaaa tactatgaac
     1621 gtgtgtccaa agaactggat tttgacaaag tctatcgtca ggagtttgag aaactgtatc
     1681 caaatgaact tccttttgaa gtagaaccac acatttcaca atccataggt cgagtgattt
     1741 attttacacg ttttgataat tgcgattctt gtaaaagtga tctcagtaaa atcctctctt
     1801 atgccaatag ccaaacaccg cttgatatct atattgtagg gcaaaacatt tctgataatg
     1861 atatccgcaa atgggctgct gagaataata ttgatccgat taaagtgagt aagaaactga
     1921 ttacacttaa tcatgataag ggttattggt tccaatattc attaggtaaa atgccggcag
     1981 cgtatcaaat aaaacaggat ggtgaatggc aatctctcgt ttattaatcg ttatcacgct
     2041 atttgcggtc gggataagtg atgctaagtc aaaacctttt accggatttg gtacagaaat
     2101 tgatagctat atccgtatag cagctcagcg ttatcaaatt agcgaaccga tgctaagagg
     2161 gctaataaaa atggaagatg gttggtatgg caatatctca cctactggtg ccacaggtgt
     2221 agggcaattt actgtgggaa cgtggaattg gctatctgaa acagaacgtg gtaagcagct
     2281 tggtatgcgt ttaattaccg gtaagaataa aggtacttat gctgatcctc gcagagataa
     2341 atacaccaat acgttagcaa cagcgttatt agctcgatgg catattgaac aattccattt
     2401 acgtcgcatt ccggcaacag atgaaaattt atatatggct cataacattg gtttagatag
     2461 tctgcatcga gcaatgatgg gaaaagctac caaagaagat atcttaaata tgcgtcgcaa
     2521 tggaatgaaa agttggatga cagtaagaga tttcctcaat tatcaaaaag gacgcttttt
     2581 agcacataaa caagaagcca attttatgtt ggtctcaaaa caggggcata ttcatactgg
     2641 tgtttccgcc tttgtttatc ctacaagtga aatgggaaaa tcagtaaagt gggttgagcc
     2701 agacaacaaa ataatttggg ttgaacctaa aagtgcaatg atttgggtag aacctacaaa
     2761 tacgccatag aggtaaaaat gcaacataag ataaaaatgc tattgctcag tttatgtata
     2821 tctcattccg tttggggcga tttaacggta atcgctgatt tcggcggtga aagtgcggta
     2881 cgtttttacg aagctttaca accggaacac gatgagaatg caccgaacta tccgaattct
     2941 attccagctt cggttagcga agctgatatt ctacctgtag tctctcataa actgtctcct
     3001 ggtattattg aaacaaaaca atttgattta acaggaatac aagcgatttt tttaattgga
     3061 gcagataata cctcagctca atggttacag cagaatcgag aaaagttgat cacgttaaat
     3121 gccactgggc ttgttgtgaa tgtccgaaca ttagcagagc tgaatcaatt acgagaaatt
     3181 gtgccagaaa taataatgct accaatcccc ggagacgacc ttgcagaacg aattggtatc
     3241 gcacattacc ctgccctgat tactgaaacc ggagtttcac aataatgtca gctaaacata
     3301 ccttggaggc gtggttacgc cctcctgttg agttttttcc ggcaattgtt catgcttctt
     3361 gtgcttttgt cagtgctgct gcgccttggt ctctagcact ccatccaagt atcggctata
     3421 gtattgcagc cggtttcggt gcgttgagtt tttatcgagc aaaacaagga tggcaaattg
     3481 ttcgttacca tcaaaatctg aaacgtttac cgaattattc aatgacgagt aaacaaattc
     3541 cggtcagtaa taagtatcta tttgtcggca agggatttga atggaaacct attcacactc
     3601 aacggctaca cgattgtttt tcggataacg gttcaaaata tctggagcct tctaagctat
     3661 ttaaaatggc tcgtgagtat gaaaaacgcc acgaaaattg gctaacacgt cttacctcaa
     3721 aggatagccg gtggaatccg gttagacctc tgccaccggt tgagggtatt cctgctatcc
     3781 atggaattga gccggatgaa gttgatgtcg ttcaatccgt tagctctcgg gttgggcata
     3841 cggtagtatt cggtacaaca cgtgtcggta aaactcgttt agctgaggtc tttgttaccc
     3901 aggatatcca ccgaggcaaa acaccggatg agcgtgaggt tgttgtcttt ttcgatccga
     3961 aaggcgatgc cgatatgctc aaacgaatgt atgcagaagc aaagcgagct ggaagagaag
     4021 atgagtttta tgttttccat ttgggatatc ctgaaatttc ggctcgctat aacccagtgg
     4081 gacgttttaa tcgtatatca gaagtcgctg gacgtatttc aggacaactc agtggagccg
     4141 gtaactcagc ggcatttaaa gagtttgctt ggcgatttgt caatatagtt gcacgtgcat
     4201 tagttgaatt aggaaatcgt ccaaactatg ttcagatttc ccaatttgta caaaacattg
     4261 attcattatt ccttgattat gcggaaaaat ttattcgtaa aactgaccct aaaatttggg
     4321 aaaatttagc gacaatagcc gcaggattag atgagaaagc tcttcctttt ggaatgaaag
     4381 atcgccctct aatttttgtg atcaacaaat atatcgctga aagtgcagtg tttgacccga
     4441 ttttacaagg actcgccagt gccgtgcggt atgaccgtac ctattttgat aaaattgttg
     4501 cttcgttatt gccgttattg gagaaattaa cgaccggaaa aatttccgaa cttttatctc
     4561 cggattatgc cgatattttg gatgaacgcc ctatttttga ctgggaatcc attatccgta
     4621 aacgaggaat tgtttatatt ggtttggatg ctctctccga tgctacagtt gctgccgcag
     4681 tcggaaacag tatgtttgcg gatttagtat caatggcagg tcatttgtat aaatttggga
     4741 caaatgaggg attgccgggt gacatgggca gaaaaaccaa actggtgaaa atcaatcttc
     4801 attgtgatga attcaatgaa ttgatgggcg atgaatttat ccctctcatc aacaaaggtg
     4861 gtggtgccgg agtacaagtt actgcttata cgcaaacgct ctccgatatt gaagcccgta
     4921 ttggcagtaa accgaaagcg ggacaaacct taggtaactt taatacccta tatatgctca
     4981 gggtaaaaga acccgctacg gcagaattgc ttacaaaaca gttacacgaa gtgacgatta
     5041 agcgtagcac ggtcacgtcc agtacgactg actccagtaa cccggatgat gacaaggcat
     5101 ttagctcaaa tacagggcag cggattagtg aaagtactgt tcctatgctg gttcctgcca
     5161 acattaccaa tttaccaaaa ggacaagcat tcgctttact ggatggtagt aaattatgga
     5221 aaattcggat gccgttaccg gctgtcgata aagatgatat gatgcctcaa tctctacgag
     5281 agctgacaga ttatatgcgt aaaaactatc acgttgtcga aaattggtgg caaccagcat
     5341 ttacagaata tacgccgtcc cgagatattg cagaagcttt tgaagcgatg tcagagcctc
     5401 aatataactc acggatagac aatcaggtcg ataatttcgg catagatgaa ccctatgata
     5461 ttgatgaaga ggaaaatgac gatgagtagt accaaaatga gagaagaaaa tagaaccaac
     5521 ctcttagatt tacccaataa ataccgtaat tttgatggcg agttttcagc ttcttgtgga
     5581 ctagacaatg ccgaagagct ccttattcat agccaatcct attttatcga gtggtttcaa
     5641 caaggctact ctttccatca atttgctgaa aaatttgcac atcaaggact ttcattatgg
     5701 tctgctgatg aaatatctat gcgtaatact gataaatcta aagatgtttt cgctttttat
     5761 cttgcatttg atcataatcc ttctggctat attcttgttc aatgtcagct cgatcgggag
     5821 gatagtctgc aatgagtgaa ggagctaaac ctcgtcgaaa atcaggttta atcagcctga
     5881 ttttgggaaa aataaatatg ttgcttgctg caattacagt atctctcata ttcagcatta
     5941 ttttagagtg ggtaggaatt gcgttttggt ggccggaaga aggacacttg catagccaaa
     6001 cgatgatgct caatgagatg caatggctat cagatgattt ctctcaaagc ctgtttgcca
     6061 aatcttctac tgcttttgca acattgatta tcgaaaatgt ctataattgg ttatttgttt
     6121 atacgggtat taaggagtgg ctaacttcac cgggtaacgg tagtatggaa cagtgggcat
     6181 atcactatgg tagagcctat attgagtctg ttatttatgt cgtgatcacc tttattattc
     6241 gcctcattat tattattttt accagtcccc tctttctatt gaccgcactt tctggtttaa
     6301 ccgaaggatt atcattacgg gatattcgaa aatttggtgc cgggcgggaa tcagcctacc
     6361 tataccacca cgctagacgt tatattatgc cgatgatggt aacagcttgg gtagtttatt
     6421 tgtctatccc gttttcgatt caccctaact tcattttagt ccctgctgcc tgtttatttg
     6481 gtttgtccat ctgtataact gcagcgagct tcaagaaatt cttgtaaaga taataagcct
     6541 cagtaatata ctggggctat tcgtctgtta tagtgtttgt cccttcattt tctgtttcaa
     6601 tatcccaatc atctccatcc caatcttcga cttcccagta ttgtggatat tcatcctctt
     6661 cggtctctcg ttcagagcta taccaaagag gcaattcccc atattcatcc aattgtgact
     6721 ctatgcgttt tctctcgtca tcacccagaa attgccaata attacagact aaatttcccc
     6781 tcaaacttaa ttcccaaaga ccaccgtaat tatatggggc attttctgca tggcagatat
     6841 ctcccacttt atgtgcctgc ggaagagggt aagcaattga tgggagaaat acagggaata
     6901 gagctaaata tctcatctgg tatctcatgg taaagcgtga atactcaact ttaatactaa
     6961 cttattaagt aacactgaca cagttgaata tctttctaac catttaatat tttgtgcaat
     7021 ttctcttctg attggtaaca gagttttcca ttaaatttta ggatcgcttt tggcactctt
     7081 aacttgaagt aaaactaaaa atagaggtgc actatgtcta tttcaacatc tttaaggaaa
     7141 ggtattgttg ttcttgttac cttatcttgc ttgccggcat ttgcttcaac agaacaagag
     7201 caattagctc aggcaattaa gcaactggaa gcggctaaat tatcactcca acgagcagaa
     7261 aaagtggcta aagcctcgcc taaaacacga gaatacttca actattctgc cattcaccgt
     7321 gatattgaaa ccgtcaaaaa gggaattcaa caatatatca acccaagcag agcattacct
     7381 cgtgatccga acgtactacg tactttaagt gaagattaca gcaaactacg ggggcaatga
     7441 tgtcctattc ccctgttgat gcattttctg cagcgagtgg tatcgatcct ttcagattga
     7501 aactcatgat agctattatt ttcctttcaa tgctgttact agcagtcgct tgggccttaa
     7561 atagtggcta taaggggttt tcatttagag ataaaagtcc tttttcactt ttagttttat
     7621 ttctcaaagg agtagcacta ttagtttgtg ttacttattt ctttatctat tagattcgag
     7681 gtctattatg agccgtatta aatctcttac gaaacatctg catagtcgtt atttagctgt
     7741 aatgctcgta ttctggggaa ctatccaaca tgcgtttgca gccggtccgg atgcatccaa
     7801 aatcccagac ttccaaattc caggcgtgga tagtaatact aaagatccaa tggaaattct
     7861 ttggattgta ggtaaaagta tcattacctt atttgcggta ttacttgccg ccggtgccat
     7921 ttttgttgtc gttaaagcct tgatcagtat ctataacgaa gcaacttctg aaaacggcaa
     7981 gaaaggctgg ggacacttta ttgttgcttt aattatcggc tttattgtga ttttcttctg
     8041 cttgtggtta gtcaaacttg cagtcggact cttctaatta aaatgtctag gagaccaata
     8101 tgccagaaca agatacaacc attccttttt tgcctactcg cctcaatcga gaggctaccg
     8161 tttacggcgg tatgacagtg agcgaattcg gcatatctgc tggattggga tttatgttag
     8221 gtctgattgt tggtctcttc ttgtggatat taactgattt ttggcttctt attccggcaa
     8281 tggcaatgtt gctctgtatc gcaaccgttt taattgggaa aggtgttgta gccgctgtta
     8341 agcgaggaaa gcccgaagcc tacttaaata ggttaattga aaagaaaatg gatgacctct
     8401 ttaacggtca taagtttata agacgagaag ggttttggtc tattcgccga tataaaagga
     8461 aataacaaat gagccagtta aaaagccaat tacacgaaaa agataaacat atcaaaacga
     8521 ctcgaatttt tgccttcctg tttttcatta ttattttggt gctcgcaggc gtgatctaca
     8581 cattcccaag tcgccttacg atatacaacc caccagatct acgagcaggg agccaacgag
     8641 cttggtggga aattcctaaa ccaacaattt atgcattttc ttatcaaatt ttccagcaaa
     8701 tgaatcgttg gatgacaaat ggcgaagagg attacgagaa gaatattacc gccctcaaac
     8761 catttttaac accacactgt gaagcatttt tacgacaaga ttataaagat cgtctccgta
     8821 acaatgaact acgtagccga actcgtatgg tatatgaaat taccggtcga ggctacagtg
     8881 aagataaagt gaccgtattt agcgaagaca attgggccgt caatcttgat ttaagcgtag
     8941 atgaacattt ccaaggacaa ccggtaaaac gagtctatat acgttttcct atcagtattg
     9001 tgagaatgga tatcgattca gtcaaaaatc cttggggatt agggtttaac tgctatcact
     9061 ccattccaaa actcttagag ggcgttgagc caaaaacaga ggagaaaaaa taatgaaacg
     9121 tctaccaatt ttattcgctt ctttactaat aagcttctct gggagtagct ttgctgatgt
     9181 cttgatgaaa tgggaaagaa aacccttgcc tattgcattg caagtggaaa aagaacgaat
     9241 catttttgtc gataaaaatg tcaaagttgg ctatccggct gaattagatg gcaaattacg
     9301 cattcaatca acgggtggcg cagtgtactt aaaagcccta gagacattcc cttctacccg
     9361 tattgaattt cgtgatgttt ctacaggtga aattttcctc tttgatattg tttctgcaac
     9421 caaagtagct aatccggaag aatcaatacg aatggtattt gatagtgcgg tagaaaaaca
     9481 atctttttca acgaatagag atgatgaacc tgatctatct ttgaccggca cacgaccaca
     9541 attaccgata ccggcagcat taacccgtta tgccgcacaa tcactttatg cgccactgcg
     9601 tgcagttgag cctttagaag gagttcgtcg tgtagcacat cgacttccga aaaaaattac
     9661 cacattgctc cctgcgtatt cgatagaggc aacaccttta atcagctggc aattggacga
     9721 atatgtagtc acggctattc gtctacaaaa caaaggtaat agtcaaatta cactcgatcc
     9781 tcgagaactt caaggacaat tttatgctgc aactttccag cataattggc ttggaggata
     9841 tggagggaat gaagatacca caaccctgta tttagtgacg gaaggctatg ctaataatgc
     9901 gcttattccg gaaactcacc ctgttaaacc cgtcggtaag aaagtgaaaa aaacaacaaa
     9961 agttgaaact aaaccgactc aatcggcgaa gtaggaggag aagctatgaa agcgaataaa
    10021 gccttgtttg tcatattggg gattgtgttt accctagtcg gtgggattgt ctatgcctta
    10081 ttttggcgaa gtgatacacc ccaagaacca acagagcagg aaattttaga tatttccatt
    10141 aaagatttaa caccggaaca agtcagatca atgggcattc aaggtgatac gccgattgat
    10201 actctgcgta ctcttgtgac aaccgttaaa tccaatgagc gtcgtatgga tgaattaatc
    10261 gatgaaaacc gacaactcaa gcagaaagaa gatttagtga atggtcgtat cagtgatgca
    10321 gtgaataatg aaactcgcaa actacaagag cagattgcag atttgaaaat gcagttattt
    10381 gatatggcaa cacatgttaa taacaaatcg acagcacaag aatcaactcc tcaagcagaa
    10441 gctcagccta gtatgacaac gaataaagga tttggtactg ccggagataa attacctatc
    10501 ggtggtgctt ctatgcctaa tgtggatatt ggaggaatgt actgggtaga gccaagcgat
    10561 caaattggat tggatgcagg tggaaaagct gtatcaggta atacacttgc aactaagttt
    10621 ggattcccga atgattttaa aggtggacaa actactggaa ataccgaaaa gaaaggtctg
    10681 ccgtttttcc cggaaactga tgtagtgaca ggctcgcaag gaacaacagg aaattctcgt
    10741 ggtaaaaacc agattacgcc ggtttacacc gtaccaagta attccacatt ccttgattca
    10801 gttgcaatga cagggcttat tgggcgtatc ccgattgata ataaagtctc tgatgcttat
    10861 ccatttaaag tactgattgg tcgtgagaat ctcattgcca atggtattga attacttgat
    10921 gtagaaggtg cgattgtttc gggtacagct actggcgact ggactctatc ttgtgtacga
    10981 ggcgatgtaa aaagtatgac ctttgtgttc aatgatgggc gtattgtcag cacgactaac
    11041 aaagggaata gtgagaatat cggttggtta tctgatagtt caggcattcc ttgtgttccc
    11101 ggggagagaa aaacaaatgc accagaatat ttaggcacaa atttcttctt agcggctgcc
    11161 agtgccgcag cccaagggtt ttcacaatca caaacaacga cagtagttga tggcaatagt
    11221 gttgttggag ctgttaccgg tgatcaaggt aagttcatct tagggcaagc catcggcggt
    11281 ggtttaaaag aatccgccga ctggtttaga aagcgttttg ctgaaaactt tgatgctgtc
    11341 tatgtaccac ctggacatcg tgtcgctatt catatcgaga aagagattga gatcgattac
    11401 aactccaaag gacgtaaagt gaaatacgga aacacatcaa ctaatacaca acttgattaa
    11461 aaggaacaaa caatgaaagc tttatattgc ataatgatga gtgccttatt gataacaggt
    11521 tgcacaactt caactgaaga attattaccc gctaacggca gtacgatgcg agatatttgg
    11581 gataaaggag caggtaataa cgatctacac ttataccgtt cacaacaagg acgaacactc
    11641 gatcctgtcg attatattcc taacactgag caacgagcct atacccgtac ggcagaaaat
    11701 gaaattaata acttgttccc tcgtttacct aatccggatc tgattatgta tgtgtatcca
    11761 caccaaactc gttccggaga gcctcttagt attccaggat attctacggt attacctttc
    11821 tacgggcgag tccaatatgc tcaaccgggt gatcgaacaa gagggctttg atgatgtctt
    11881 ttttaagtga ggtattttcc tctttcaaac cgactaagac agaggttata tcaagtgaac
    11941 caaatgaaaa ttcaggtgag tctgacatca ttcaaaataa aatgagtgag gtaaatggcg
    12001 aggttcaacc attaaaacgc agtggaaaac tcaccctgtc acagcatcac cgtcggttat
    12061 actcacaagc cccctctttt attgatcatc taccttgggg agaatatttg aatcaacacg
    12121 gtgtgatact cctcgatgat gctcgtagtg tcggggcggt atttgatatc aagccgattg
    12181 gtacagcagg acgtagtatt gagtttttaa gcaggatacg aaatcttgtc aaagatgcct
    12241 tacaagatag ctttgatgag ctggatataa atccttacgt cgtgcaattt tattgccaag
    12301 atagcgatga tttacagcct tatattgatc agctacggaa ttatatctcg cctattgccc
    12361 aaaatagtgc atttagcgaa gaatggttac gagtacaagc caagcatttc aaggatattg
    12421 gtaaaccaga agggcttttt attgatgaca gagtgacaaa tacagcttgg tctggacgta
    12481 ttcggagtac caaaatggtg atttatcgat atgtagataa gtccaatgat tccaatgaaa
    12541 atcttattat tgagcagctt aataatgctt gttcccgaat caatggggct ctaacaacgg
    12601 ctggattaca gttacagcgg ctagatggtg aacaaattcg ccaatggtta ttgcgttggt
    12661 ttaatcctaa tccatctatt aattttgagg gattaagcaa caatgattgt taccatcttt
    12721 ttggcaaaca aacctcaaat gatgatcttc cattagcttt tactgatttc agtgaggatt
    12781 tattttattc acagccgaga aatgaaggta gctattggta ttttgacgga cagccacacg
    12841 aggttgttgt cgtcaataat ttaagaaaac aaccagaagt gggcttaatg accggcgaga
    12901 ttactcgtgg gcgtaatatt aatgcgttat ttgacctatt gccagaatca accatcatgg
    12961 caattaccat cgtcatccat cctcaggata agttggaagc acatttagaa aaaatcagta
    13021 gtcgagcagt gggtgagaat tttgagtcaa aatacctaaa agaagactgt caaactgtac
    13081 aggcttatct taaagagggt cataaactct atcaagcagc tattgcattt tacgttcgag
    13141 gtaaggacga aaaggaattg cgtactcgat ctcgccaact aagaacaatt ctgctcagta
    13201 acaatttaga gccggtaaag gaaaacgcag aaattgctcc tcttaatagt tacctacgtt
    13261 ggctaccaat gaattttaat ccgcagatgg atgccaaatc ccattactac acgaagtact
    13321 attttgtaca acatttggca aacttattgc ctatctttgg tcgagataca ggcactggta
    13381 atccggggat tacttacttt aatcgaggag gagctccgtt taatttcgat ccgtttaacc
    13441 gtaaagacag aaccaaaaac gctcacaaac tcttattagg accaacaggc tcaggaaaat
    13501 cagcaacact atgtgggcaa ttatgtcagg ctatggccgt ttatcgtcct cggacgtttg
    13561 ttgtggaggc aggaaattca tttggtttat tagcggacta tgcagaacgt tttggactga
    13621 ccgtaaatcg cattacgtta gccccaaaca gtggcattgt cttaccgctc ttttcagaag
    13681 cccatcggtt attggatatg gaattaaatc cggaagatgt gccggaagac attgaggata
    13741 acgatgacac tgatgatgaa ggcgatatgc aacgagattt gttggccgaa atggagctga
    13801 cagcacgttt aatgatcact ggtggcgaaa agaaagaaga tgaaaaaatg agccgtgctg
    13861 acagagcagc cattcgacgt gccattttaa atgcggctcg ccaaactaaa tccgaaggca
    13921 gacaaacgct aactgaagat gtgaaaaagg cattggaggc tataagccgt gatgaaaata
    13981 ctcgtgaaga acggcgtact cgtttggccg aaatggcaga atcattggaa atgttctgta
    14041 ccggagtcaa tggacaattt ttcaaccggg aaggcgaaat ttggccggaa gcagatctga
    14101 cattggttga tctagccatg tttgcccggg aaggttatga agcagaattg gccatttcct
    14161 atatttcact cattaaccat atcaacagtc tcggtgaaaa ataccagcat agcgacagga
    14221 tgattctgaa tgtaaccgat gaatcacaca ttatcactgc caacccatta ttagcgaaat
    14281 tcttggtgaa aggctcaaaa atgtggcgta aattagggat ttggctgtgg cttgcgacac
    14341 agaatatgga tgacttcccc aatgaagcag cgaaattgct ctcaatggtc gaatggtggg
    14401 aactgttgaa tgtgtctgct agtgaaattg atgaaatcaa tcgcttccgg aaactgtccg
    14461 aagctcagaa aacgatgttg ttatctgcca aaaaatcaga tcgtaaatat accgaaggtg
    14521 tggtattggc aacaaatatg gaagcgctat tccgtgttgt accaccgagt ttatttttgg
    14581 ctttaggaat gaccgagaaa cacgaaaaag cagaacgtcg gcaattaatg atgcaacatg
    14641 gttattctga attagatgct gctttagaag tcgctgctcg tattgataaa gcgaggggaa
    14701 ttgcataatg atgaaacaac actatcgact atttaatgtc ggaccacaaa aatcctcatt
    14761 agggattgta tcttcggcgg tagaaactca actgcttgga ttttgtgaac aaattcgcca
    14821 actcatcggt atcgggaagc agattacctt attccctcat cgggtagtgc aaaaccactg
    14881 ggctatcgaa cttagcggcg agaaaggctc tgttcactta ttactaaatg tgacggggcg
    14941 ttctttactg cctacttcca attaccgtga atggcctgct cgtttagtca tcgaaatagc
    15001 cgatcatgtg gatgcttact ggtttgcaac attccttgct cagcaattgg atttgaaaag
    15061 taatcttttc ttcttatcca catcaattgt ggataactct atgcataacg aggtaacgga
    15121 tactaatgaa gcctgatacg acaatgccta aaatgaaaaa ggtgagagct gtattaaaaa
    15181 caaccttgat tatcatcggt attatcttac tactacttat tgttggttgg ctggcaatga
    15241 cctatttccc taccacaaat tttcaagcgt ggttctatga aacccgttat gcatggttgg
    15301 gatggcgatt tgtattatat ggggttattt ggttcttaat ggtaaaactc aatcgaagag
    15361 gacaaatgcc attgaaagcc agactgatga ttttatctgc tatccccctt atagagggaa
    15421 ttaatttact gtatctactt taaggaggat gagatgacct ttaccgtaga tagctactta
    15481 gaatactttt tgaccttact agcttggatc attaacaata atatttttgc tgtactggtt
    15541 caaaccggtc tattcatact accgctgatt tttgttttaa tcggcacatg gatggaagtt
    15601 aaaaagcaag gggaggacga aggtaataaa ggagatttac ttattacttg gctcagcctt
    15661 aaattttatc cggcgatgtt tgttgtagtg ttagttttgg ccccgatgat acctatcaac
    15721 cttaacaata ttgagctgaa tgttgaacgt tccaaagcct gtggctaccg tattccaacc
    15781 tcaccagagg atagtggtta taatcaaatg aactctgaat tgggcaacca gcaagcgaga
    15841 gtaccgcttt ggtggggatt attccatcaa atcaacaaag gagttacaca cgcattaaca
    15901 gcttcaattc cgtgtaaacc ggatttacgt caagttcgct ttgaggtcca acatgaaaaa
    15961 atcaataatc ctgcattatt gactgaggtt cgcttatttg tacaacaatg ttatgtacct
    16021 gcacgtcaga aaattcaaag cagtcagctc tcattgactc cggcacaggt gcgtgaaacc
    16081 agctggttag gtggtcgtat tcttttgaca aacagtgagc tttatccccg ttatcgagct
    16141 caacaacctc atagtctatt tccctacaat gcttcccggg ataatggatt gccgaataat
    16201 ggggaaggtg gttttccaaa ttgtgcagag tggtgggata cggcgaatac tggtttaaaa
    16261 gatcgtttat tagctgatgt caaacagaac ttctctgcaa aagtgattga tttttttagc
    16321 agcaaagaaa atgcggatga atccatactc cgtactgtat tacgagcaga gaatatggat
    16381 atttcgagag ggaaagttta tcccgggtat ggggggaatt tagatcctac atttgcaaat
    16441 gcaacgactc gattaacatc ttcagtggga agcttagctg ccagctttgc agcctttcca
    16501 gcattcgatg caatgcgaca agcactgccg atggtacatg cttttatgtt gatggctgtg
    16561 atcatcatta ctccgctggt tattgtgatg agtggttatt ctctcaaaac attagttaca
    16621 ttaacttttg tgagttttgc tttggtatca ctgacattct ggtgggaatt agcaagatgg
    16681 ttagattctt ggctactatc cgctctatat gattccagtg cacatagtcg aataaatccg
    16741 tatttccttg aaaatacgca agatgatttt atcgtcaatt ttgtgatggg ttcgatgttc
    16801 ttggttttac cggcgatttg gctaggcagt atgtcgtggg ctggagtaaa aataggagat
    16861 atagctgccg gttttactac tgattcatta gatagtaaat ccgcaggctc tcaaggtggt
    16921 aatttagtta agaaaggcgg taaggaaata tctgcagggt ttaacaaata aaacaataag
    16981 gtagaggtta atctctacct tattaatttc taatcatatt ttctcatctt tttacaaaat
    17041 agccaccctg atagagtcca tatccaaaat atccatcacg atatccatca agctgatttt
    17101 cgtcttgatc agcaattaca tcccataaat cttccggctt actatcctca ctatcatctt
    17161 caatttcatt aaccgtgttt tcgacgtggt ttggattata tgctacgtca tttgttgaaa
    17221 tatcttctac tggtgttcca ttgagaattc gcagaaccgt gaatccaact aaaaacaagg
    17281 gaagtcctgc aaaaatcacc gcaaaaacga cagcttgttg tagcggtttt ggtaaaaatg
    17341 cggtacgttg tttgataaat ttaaccggct tagcgagctg ctttccgaaa tcgataaatt
    17401 tcatagtatc tttcctaaga taaaaggtta ttgtttttgg cgactactat aaattacttt
    17461 atcttta
//
LOCUS       DANMGB010000039        17420 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.039, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000039 DANMGB010000000
VERSION     DANMGB010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17420
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.039"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            73..957
                     /gene="oxyR"
                     /locus_tag="PXG19_000970"
     CDS             73..957
                     /gene="oxyR"
                     /locus_tag="PXG19_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL6066284.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            960..1592
                     /gene="fabR"
                     /locus_tag="PXG19_000971"
     CDS             960..1592
                     /gene="fabR"
                     /locus_tag="PXG19_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL6066285.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(1619..1918)
                     /locus_tag="PXG19_000972"
     CDS             complement(1619..1918)
                     /locus_tag="PXG19_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL6066286.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(2007..5822)
                     /locus_tag="PXG19_000973"
     CDS             complement(2007..5822)
                     /locus_tag="PXG19_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6066287.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(5785..6270)
                     /locus_tag="PXG19_000974"
     CDS             complement(5785..6270)
                     /locus_tag="PXG19_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066288.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(6279..8438)
                     /locus_tag="PXG19_000975"
     CDS             complement(6279..8438)
                     /locus_tag="PXG19_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6066289.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(8667..8867)
                     /locus_tag="PXG19_000976"
     CDS             complement(8667..8867)
                     /locus_tag="PXG19_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL6066290.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            9231..10385
                     /locus_tag="PXG19_000977"
     CDS             9231..10385
                     /locus_tag="PXG19_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL6066291.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(10433..11422)
                     /locus_tag="PXG19_000978"
     CDS             complement(10433..11422)
                     /locus_tag="PXG19_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6066292.1"
                     /translation="MNDLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNIS
                     EHIKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRK
                     WANSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKL
                     SSDYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRK
                     GDIVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFS
                     VLGNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
     gene            complement(11582..12946)
                     /gene="mpl"
                     /locus_tag="PXG19_000979"
     CDS             complement(11582..12946)
                     /gene="mpl"
                     /locus_tag="PXG19_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL6066293.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(13242..13997)
                     /locus_tag="PXG19_000980"
     CDS             complement(13242..13997)
                     /locus_tag="PXG19_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL6066294.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            14152..14469
                     /gene="metJ"
                     /locus_tag="PXG19_000981"
     CDS             14152..14469
                     /gene="metJ"
                     /locus_tag="PXG19_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL6066295.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            14517..14747
                     /locus_tag="PXG19_000982"
     CDS             14517..14747
                     /locus_tag="PXG19_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL6066296.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            14740..16164
                     /gene="panF"
                     /locus_tag="PXG19_000983"
     CDS             14740..16164
                     /gene="panF"
                     /locus_tag="PXG19_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL6066297.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(16241..>17420)
                     /gene="nhaA"
                     /locus_tag="PXG19_000984"
     CDS             complement(16241..>17420)
                     /gene="nhaA"
                     /locus_tag="PXG19_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL6066298.1"
                     /translation="KEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTIVSVQ
                     FGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVGGMIV
                     PAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAIIDDL
                     GAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSVLKSG
                     VHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLLEMGM
                     EQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLCGIGF
                     TMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPENNATY
                     "
BASE COUNT         4911 a         3934 c         3242 g         5333 t
ORIGIN      
        1 gcattatact cacaaatatg gcataattca gcctatcaga acaataggaa aaatttaaat
       61 tggaggaatc aagtgaatat tcgagattta gaatacctta ttgcacttgc agaacataag
      121 catttccgtc gtgcagcaga atcttgtaat gttagccaac ctactttaag cgggcaaatt
      181 cgcaaattag aaggcgaact aggcactatt ctgcttgaaa gaaccagtcg caaagtcctc
      241 tttacgcaag caggcttaac attagttgaa caagccaagg tagttttacg tgaagtaaaa
      301 attctaaaag aaatggcaag caaccaaggt aaagagatgt ctggcccgct tcatgttggt
      361 gtaatcccaa ccttggggcc ttacatttcg ccaattattg tgcctgcatt aaaagcagaa
      421 tttgcagatt tagagctgta tatttacgaa ttacaaacca accaattatt agatcaactt
      481 gaatccggcc agcttgattg tggcattatc tcatttgtaa aagagagtga atcttttatt
      541 gaagtgccta tctttaatga agaaatgtac ttggtagttc cagaacaaca cgaatgggca
      601 gcgcttaaaa aattcgatat gaatttatta aaaaaccgtg agttgctctt tttagacagt
      661 ggccattgtt tacgcactaa tacgctagac tattgtctat ccattggagc aaaagaaaat
      721 ccacacttta aagctaccaa ccttgaaacc ttacgcaata tggtagcagc aaatgttggc
      781 ctagcattga ttcctaaatt agccgctaaa ccgattaaag gagtacatta tattccactt
      841 gaaaacccga aaccgtttcg agctgtggga atggtgtatc gaccaggttc accattacgc
      901 gcccgctatg agcgtttagc tcaagccatt actaaaatta tgcaatccga ggcgtaaaaa
      961 tggcaaacgg tatgagtgtg cgcgcaattc agaaagaaaa aacacgcaga gcattagtag
     1021 aagccgcctt taatcaatta agctcagaaa aaaatttctc taatctcagt ttgcgtgaag
     1081 ttgcacgtga agctggagtc gcaccgactt cgttttaccg ccactttaaa gatatggacg
     1141 aactaggctt agcaatggtg gacgaatccg ggctactatt acgccaatta atgaggcaag
     1201 ctcgaaaacg aattgcaaat ggcggaagtg ttgtcgtggt ttcagtggaa acattcttcg
     1261 aactgattgc cgaccgccct aacgttttcc agctattact acgcgaaagc tccggtacat
     1321 cgcaagcgtt tagaaccgca gcatcacgcg aaattcaaca ttttgtagct gaattggcgg
     1381 actatattat gagcaaagat aatcacagta accgagaact tgcttatatt caatcggaag
     1441 gtttagtcac gctagtattt actgccggtt ctcatgcttt ggatatgaac aatcaagaac
     1501 gggaaaaact aaagcaacgt gtcattatgc agctaagaat gctgattcgt ggctccacct
     1561 attatgccaa taaacaagct tcatcaacat aaaaaaacag acgcctaagc gtctgttttt
     1621 attctttcgt aatatatgca gtcgatagct ttaaccattc tagtgctaat tgatgatgtt
     1681 cagataacgc attccataac gcatcttctg acaagatact ataattgcct ttagtatcta
     1741 actgttcatc aaaactatca tgtaattcac gccattccgg gctagcataa aaccgactta
     1801 agggttccaa aagtgcagaa gctcgtttcc attgctcaat ccccttttcc aattctggta
     1861 atagctctac ccattggtta taacaatcct gcattttctg aatatctgct tttttcattc
     1921 tttaccgctt acaccataaa ttttagcctc aatataacat aaaaatcccc ttccgaagaa
     1981 ggggatttca actcaattag gctaaattac cactggtatc caacgcctac accgccacca
     2041 aagtcgcctc ggctattcgc attaccttgt aatttcaaga taagcttacc gttatcactt
     2101 gaacgtgaat aacctactgc aagcgcgttt tcacctttaa atgtaccacc tgctgcagcc
     2161 accatagatt tacctggaat gtaaacctgc ggtaacgctg ctgctgcatt tgaaccggca
     2221 ataccagcac gggcttcacg gttattacga tggatcttgt tatttaagtg attaacagca
     2281 ccttttaact gaccaacatt aacagcatcg gtatctgcct cacctgcttt aacattagta
     2341 atacggttac caccattatt taagccatct ttcgttaagc ttaccgcttt tcctgcagag
     2401 ccattattaa tggttacgcc attattgttc accaatgtat caccagtctt gctagtaaat
     2461 tcaggggtat ctgaaacggc tacagttaca tcagaacctt tacgtgtcac tttgatatta
     2521 ttacctgcat tcacgctcac tgtactacct gcttttactt tcgcaggggc tttatcccct
     2581 tcaaccgcac ctgtaccaac tgctttagaa tctacgttcc agcttacgtt gtttacggca
     2641 tttgctactg ttgttgcatt cacaaagcgt gaaccggtac cgttaggatc ttgaacattg
     2701 attttgccgt tatcagcaac ggttaaatct gtgatgttta cgttcacttt cacctcacca
     2761 gccttatcac tggtaatagt tgtaccatta ccatttacga tattgataga accatcttca
     2821 tcagtaccaa tgttattacc attcactttc gcatagttgt tcagctgttt accgttgata
     2881 acatctgtgc ttactgggct aatatcgcca tctgctacat tagtgatctt agttggttta
     2941 ccgtctttat caccgacttt gatgttatca ccatcattag tgattttcgg accattctca
     3001 ctgaactgta cgctattgaa gctcacatct tttgctgtcg caaaagtaaa ttgattacca
     3061 tcacgtttaa cagttaagtt atcacctgct tcaaacacaa cttcttcgcc cgttttcact
     3121 agcttagtcg cagcttggtc accggcagcc ttattacctg cagatttaat attaaagcct
     3181 gcattattca ctgcatctgc aacagtttga gcaatcaata acgcatttgg ctgagttggt
     3241 gctttcaccg taccatcttc gttgttacct aactcactgg tatttgcagt gatgttacct
     3301 tcattatcta ctttaatagt agtaccgtca gttttcgctt caacgttata agtagttgaa
     3361 ccatcagcat tcgtgctagg tgtgatagtt acacctcggt taccgcccac tttcgtagta
     3421 gctgcattag ttgccgcttg taaatcacct aagttcacta cgttgtttag cttgtcgcct
     3481 tcagcatttt taatcgcttc tgcacggtct ttaccctctg gggttgagcc atcttcgtta
     3541 cgaacactac ttgccacatt gcctaattga acaggggctt cacctgtgaa tttagccgta
     3601 ttgcttggcg ttgagctatc agtaggatct tggtttacaa actcaatcgg gctatctact
     3661 ttaatcgtat tcttaccgtc tttgttttca accgtgaccg ttgtaccttt accgttaata
     3721 aaatcaaccg tgtcattatg taccacagta tcaaccgctt tgccgttacc ttgtaaattc
     3781 cagcctgcat ttaatacatc acctaatgtt gctgcattac ttaacttatc agctaagttg
     3841 gttggattat tgtctgctgg ttgaacctta tcatctgcag tcacaggtat cagattagac
     3901 gcaacattgc taatcgcttt attacctgca ttgataccat ctttattgat agtaattgga
     3961 ttatttgcag gatctgcttc atcagttggt acagttacag tgttagaggt tacgctgcta
     4021 aacttaacat catctttagt cgcataaatg actttaccat cagcttcttg cttcacagtt
     4081 aagtttttac ctgcaaccat ttcaactgct ttacccggat taatcagttc atcaccacct
     4141 gaaagcttct ctccaccttc tacagccgac gttttcaacg taaagcctga gttattgatg
     4201 gcgttggtaa tatcacctgc tgtcactaat ttcttagcat catcagcggt tggttcatca
     4261 attctaccgt cattatttgc atcatttaat gccgtagtgt tagccttgat cgcaccggtt
     4321 gtaggatctt ttacaattgt tacatcgtcc gtattcacag aaagatcgaa cacattcgcg
     4381 ccatcagcat tttttgtcgt gttaaccgta actgatttat cagtcgactt cacttcttca
     4441 cgagatgcca tagcgaaagt ataaagctga ctaccattta ctgcatcttt actatctgca
     4501 tttacgtcac cggcagctac attagttact ttgactgcat taccgtcttt gtcaccaaca
     4561 ttgatattac caccattgtt agtaatctta ggaccttcat ttccgaactg tacactatca
     4621 aaattcacat tttttgcagt tgaaacagta atgttattcc catcacgggt aatctcaatg
     4681 tttttaccat ttaagaactg aaccgtatca cctgttttca ccaggctctt ctcgtcaccg
     4741 tttgctttaa tgttaaaacc tgcattgtta attgcatctg caacggtttt agctgttact
     4801 aatgcatttg gttctgtagg ctcttccact ttaccatcag ggttatttgt taactcgctg
     4861 gtgtttgccg tgatttcgcc cttatcgttt accttaatgg ttgtaccatc cgtttttgct
     4921 tcaacggtat aagtggttga gccgtcatcg ttagttttag atgttacagt aacaccttta
     4981 tcaccttcca ctttggtggt tgctgctttc attgctgctt gtacatcacc cacattcaca
     5041 gcattattca acgtatcacc tgttgcgttg ttaatattat ccgcaatcgc tttacgctct
     5101 gcatctgttg gtgctgcttt atctgcaaat gtaccaccca cgccgctctt cagattagtg
     5161 attgagcctg ttgtatctgg tttaccattg ctcatatcaa tgctgttgaa tgcaacatta
     5221 tctttcgttg tgtaagtgaa tttaccgtca gcttgggtaa gtgtcatatt tttacccgca
     5281 tcaaaggtaa ctgtttcact tggcttgatt agctgtgttt tcttaccttt ggtttcacca
     5341 ccatcaacac catcacctgc tgttacatta aagcctgaat tattgattgc attagcaata
     5401 tcacctgccg tcactaattt cttagcatcg tcacctgtag gctcagtaac tttaccttca
     5461 ggagaattat ttaatgttgt ggtattcgct ttaacttcgc ctgttgtcgg atctttcacg
     5521 atagtaacgt tgtcagtatt cactgtcata ttaccgtcat tatcacgacc gatagattta
     5581 tccgttgcaa catctaccgt atattcagta ttgcctttat catcttcctt tccggcttta
     5641 acagttacgg ctttagaacc agctactaca gatgaggttt tctctgaatt attaattgca
     5701 tcagccacat taccacgagt tactgtagga gcacctgctt tcgctacatc taccgtatag
     5761 attgtttgac cattatcacc tgtttcaggt gcaccaacag ttgctaaacc tgaacctttc
     5821 acttcggttt tgtgacgctg ctgcttgttt taactgactt acattcaccg catcagtatc
     5881 agcttcacct gctttcacgc ctgtaatttt ggttggatta ccatcattac ctgcaatatt
     5941 aacattacca tctttattcg tgattttcgg gccattatca ccaaatgtta cgctatcaaa
     6001 tttcacatct ttcgctgttt cgtacgtgaa tatagtgcca acacgtttaa cttttaagtt
     6061 atcgcctgct gcaaaaatca ctttttcgcc cggattaatc aactctgctg cttcttgatc
     6121 accatcagct ttattgccac cagattttgc attccaacct gctttttgaa tcgcttcaga
     6181 aactgttttt gtagttgcaa ctttatcttc ttctgcaggt gtagttactg cacctgttgt
     6241 gttatcaacc gtgatagaac cggtatccac atcaaaggtt actttacgcc atcagcttct
     6301 tgtgtaacat ttgaaactgt acctttaccg tttacaaatt gtacagattc atttggggtc
     6361 actgtgcctt tggtttcacc cgcattatct ttaatattga aaccttggtt tacatagtta
     6421 tttaagttcg taattgcatc gccaacgttt gttgcagtat taccatactg agttccagct
     6481 gcattcgtta cattatattt aggctgagtc acagagccat ccggattcac aacagaaccg
     6541 ccaccaaaat tatttgcagt tgaatttgca aggttactgg ttgcattcat tgccatataa
     6601 agttgtgaac cattaatcgc atcggttgat gtagcagaaa tctgacccgc tgccacattt
     6661 tggatttgac gctctttacc tgcagagcct acagaaacaa catagttagt atctttattt
     6721 accccggcaa agccattata agtaataccc cctaccgttg cattttcagt tggtgttgct
     6781 gcccttacga ctgattcgct acccaaagca acagaactat tcagagtagc ttgagctccc
     6841 atacctaatg ctgtagcaaa ttgagctgtt gcattagcac gtgtaccaac agccactgct
     6901 gattgtgctg aggcaattga atttgcacct acggctaaag aggcatttgc actcgcattt
     6961 gctgcaacac caaaggcaga agctttttca gccgttgcat tagcattaga acctaccgct
     7021 gtagcatcac ctgctgtcgc atttgtttgg cgaccaagtg cggttgtacc attagccgtt
     7081 gcatttgctg aatgaccaac tgccgtagct tgaatacctt ttgaaaccgt agcaacacct
     7141 aaagataacg ctccgttacc atttgcattt gagtttgtgc ctaatgctac tgccgcttgc
     7201 tctccacctg ttgccgttgc attcgggccg atcgcaattg agtttctgct cttcgcgcca
     7261 tcattagctt gattctcagg tacggttgaa ttcacagaga aatattgaat ttggcttgct
     7321 tgcgcaggaa tattgacaga aagatcataa ataaccgtgc catttgcatt tctctctgta
     7381 ctttttacag ttactgtacc atcgtttgaa acaacagtag cttgggtatc tttcgtaaag
     7441 tcatcaatgg ctttcttagt taaaccaatt tcatagttag ttgtattcgc agcagttgca
     7501 gctttacctg ttacagtaat gtaatcaggg ctagaagaat ttgccgtggt gttatacgca
     7561 tttactgtat aaatagtttg cccatttgca ccggttgcat ttgtaatatt aacattgcta
     7621 cctgcaacaa cttctgtttt taccgctttt aatgcttctt caatcgtatt tttatttgtt
     7681 ccaccaatat tagtataggt aacagaacca tcaggcttta ctgtagcatt accacctaaa
     7741 atatttttag ttgaattagc aaggttacct gttgcgttca ttgccatata aagctgtgaa
     7801 ctattaattg catcggttga tgtagcagaa atctgacccg ctgccacatt ttggatttgg
     7861 cgtttgatcg tgtttgagcc aacagaaaca acattccctg ctgccgtagt attagccgca
     7921 aagccggaat aagtaatacc atttaccgtc gcagaaggaa ctgccacagc gttggaaacg
     7981 gttgaattac tccctaaagc aaccgaatta tttagcgcta cattagcacc tgagcctaag
     8041 gcaatagcaa aaccggcact tgctttagca ctatcaccaa ttgcaaccgt agattggttg
     8101 gaagatactg cacttacccc taaagctgtc gcattaacac ctgaaactgt cgcattataa
     8161 ccaatcgctg tacctctagt tgcagtagaa gttgcattag cattagcact tgaacctaaa
     8221 gctaaagaat aagtagcatt tgcaacagac ttatccccca ttgcacctga acccattgca
     8281 aatgaacgag tgccactagc ggcagatctc catcccatta ctgttgaacg gttaccagta
     8341 gctagagctc ctgcaccaaa agctgttgca cggttacctg ttgcagcagt atccgtacct
     8401 aatgcaatag catttgctga agtcgctcta gcccccatac caatagcaat agaaggaact
     8461 aatgcccaat tctgaccagt gttattgaga ctctctacac caatattata gtaatgtaag
     8521 aagtatcttc tggatccact aaatttgttc tatgcgttgc attcgtatct gtaccaattg
     8581 caatagtaga tctgccagtt gagattgaat ccgcaccaat agcaattgcg ttctccgatg
     8641 atgcagttgc ttgtgttgaa atataattac ttgttgttga acctataaga tacaacagcc
     8701 acagcatcat tagctcccaa cacggcacta gctccagcca ataaagccaa tgttgcctta
     8761 cttgcagaac taacagattt cgttttacct ttcgctcgtt gtaattcaga tactgcaacc
     8821 caactttgtg ttgcctgatt ccaaataact ttaaaaattt gattcataat cgaccctata
     8881 taaaaataaa aaagattacg tagaacctat gttcaacata atcttcacca atataaaaaa
     8941 ccgccaccta tttaagtgaa ataacttact tatagactca gaaatttaag tgcgcgtatt
     9001 ttacgctatt tgtaatataa ttcatcttct ggagtgtaaa tttattgtaa ataatacgag
     9061 gaatctaacc gcttgttata acgcaaaaca ccttgactta aatcaagcca ctacctcatt
     9121 ttgaggggag atttatacgc agtgaaattt taaaataagc taaggtttac ggataatcgt
     9181 tcaacactat tgaattatca ctgtagttat cgttaaaaag gtatgctttt atgaaccaat
     9241 tcttccctct aatctttagc ttaactctat tttccggcgt aactttggca ctagaaaaag
     9301 cacctcgaac tatgccgaca gaaggaataa ataagcccct acttggacaa attctattct
     9361 ttgacaatat gctgtcacac aacggttcac aaaactgctc cagctgccat aatccggatt
     9421 atgcctttat tgataaccgc actactccgg caaaaggggt ggtttcacaa ggagatactc
     9481 caaccaaatt cggcaaacgc aactccccga ccatgcttta tgcgaaatac tcgcctgagt
     9541 tccactttga tgagcaaagt caagaatata tcggcgggca gttctgggac ggacgagcca
     9601 aaaatctcgc cgagcaagcc ggtatgccgc ctatcgaccc aaatgaaatg ggaatgccta
     9661 acaaattaga agtagccaaa agattatata atgtgccgat gtatcagcga tttttagggc
     9721 aattttacgg tgaaaaggta tgggaaagtt atgaaagcgt ttatgcggca atggaagatg
     9781 cgattgcgac attccaacaa gaaaacaaac ttctcgctcc atttgattca aaatatgatc
     9841 tatttttaaa aggcgaggta caattaactg cattggaaga aaaaggcaga gctttatttt
     9901 tcaataaagc tcaaactaat tgtagtagtt gccaccaatt acagagtgct gcaaaccacc
     9961 aagaagaaac ctttagcaac tatcactatt acaatgtagg cgtacccggt aacccagact
    10021 tgatagcggt taacggcttc gcaccagact tcgtcgattt aggcttattt gaaaacccaa
    10081 atgttaaagg tgatgaaaca caaaaaggca aattcaaaac cccaacattg cgtaatgttg
    10141 ccgtgactgc actttatatg cacaacggtg tgtttaaaga attaaagact gttttgctgt
    10201 ttttagacag ctacaataac ccggagcgaa aaatcaaccc tgaaaccggc acggcgtggc
    10261 aacaagcaga atttgaaccc actatcgccc accaaaaact caaagccaaa cccttaagcg
    10321 atgaagaaat tgatgccctc gaagcatttt taaaaacctt gacggatgag cggtatagaa
    10381 aataaggcta caagcggtaa aattttgggg aaattttacc gcttgcgttt aactaccgtg
    10441 ttagctcact ttctaacttt tccaatgcct gcaaatcttc ccaatctgcc tctttctgtt
    10501 ttaaacattt acgctgaata tcaaattttt cgtattgctc tctgacaaag ctttccattt
    10561 gtttatgcgt gattgttcca ccatttccta atacagaaaa gccgttaaac tcaatcaaca
    10621 tatctacatt tcttcgccag aaacctaacg taagatcttg gttgttcttc acacgtaatt
    10681 cggcactttc aagaaagatc attaccaagc gatttaaaga atccagctca ttattatcta
    10741 aatagttttt cgcaatcaca atatcgcctt tacgcacgac ttttcctttc cagctagtta
    10801 atcccatatt catcttagtc gcatcagcac gttgacaaat caactcagcg gcagtgtgtt
    10861 tggttattgc ataaatgagc ttattttgcg tttctgcaaa aaacatttgc gtatttttat
    10921 ctgttttgtc gtaatcgcta gagagtttga aaagctctcg tactttttga tagaaacgca
    10981 attcacttgc ccgaatctca cgaatctgtt caagtaattc atcgaaataa tctaaacgac
    11041 cctgcggatt tttcaaacgc tcgctatcaa ttaaaaaacc tttttcgaga taagtgcgta
    11101 atgtgctgtt tgcccatttt ctaaactgta ctgctcttgg gctacgaact cgaaacccta
    11161 tcgccagaat catttcaagt gaataatgtt ttacttgata attcttgcca tcttgagcag
    11221 ttatcaagta atccttgata actgaattct catctaactc tttgtctttt aagatatttt
    11281 taatgtgttc ggatatattt tgcacagagg tgtcaaaaag ttctgcaagt tgattttgtg
    11341 tcagccaagc ttcattttca accactaaca aggctacatt gcttttgccg tcttccgtat
    11401 tataaataat taaatcgttc atattttatt ctgtttattg gtagagatat tagtcgctat
    11461 tttcaataaa acatgtataa atatccagaa ttgattttga atttttcgat gcagatcaca
    11521 aaaatagaga gttatacaaa caagcggtaa aattttgtaa aaaatttacc gcttgtaaag
    11581 gttacttatc agctaatttg gcaagtagtt tttgatgaat accgccaaag gctccgttgc
    11641 tcatcactaa gatgtgatcg gtgggtttgg cttctttgac gactagatcg actaaatcat
    11701 caatatttgc cgaccaatac gccggttgcg ataacacatt ggtaatctcg ctcacactcc
    11761 acgcaataat atcaggctgg taaacaaaca ctgcttcggc atcgtgtagg cttggggcta
    11821 tttcatcttt atggacaccc attttcattg tatttgaacg aggctctaac actgccaaaa
    11881 tgcgttgatt tttgccgact ttaccacgca gagcatcaat agtcgcttct atcgcagttg
    11941 ggtggtgagc gaaatcatca taaacggtaa tgccgtttac ctcgcctttc acttccaaac
    12001 ggcggttagc attcacaaac ttgcctaatg cctcgcaagc cccttgcact tcaacccctg
    12061 cgtgatgagc ggcggcaatc gccatcagag cattatgcat attgtgcttg ccgataatcg
    12121 accaatgcac ctcgccttgt ttaacgccta agtgaaacac ctcaaactgt gagcaatcgg
    12181 catttaacgg tttagcaaac cattcgttct gttcgccaat aaattgaagc tggctgtaac
    12241 tgcccatttt tagtgtatct tgcacgtttt gatcagcgat tgccgacaaa atacagccac
    12301 tttgtggcat cgtgcgaaca aggtggtgga actggcgttg aatcgctttt aaatcatcaa
    12361 aaatatcggc gtggtcaaat tccatattat tgataatcag cgttttcggg gtgtaatgca
    12421 caaatttaga acgcttatca aagaacgcag aatcgtactc gtccgcctca atcacgaaga
    12481 atggactgtt accggcacga gccgaaatgc cgaaattacc ggcaacaccg ccaattaaaa
    12541 agccggtatc aatcccattt tggtctaaaa tccacgctaa cattcctgtt gtggtagttt
    12601 tgccgtgcgt gccggaaacc gccagcaccc atttgtcttt aagcaaatga tcgtgcaacc
    12661 attgcgggcc ggaggtgtaa ttgagttggt tgtccaacac atattccacg cacggattac
    12721 cacggctcat cgcattacca atcaccacta aatcaggagc cggttgcagt tgagcaacat
    12781 cgtaattcgg gataatttca ataccgtgag cagctaaaaa ggtactcatc ggtgggtaaa
    12841 cattagtgtc tgagccggtc actttatagc caagctcacg ggcaatcatt gccacaccgc
    12901 ccataaaggt gccgcaaatg cctaaaatat ggatatgttt tttcatcttt ttatatttaa
    12961 aatgttagaa tcatcccctc tccccttgtg ggagagggat agattttttc ttcgtgcaga
    13021 agaaaaaatc agggagaggg gtaagcggtc atttttaggc ttaatattgt aagctccctc
    13081 tctctgaaaa atatttctga acgaaatatt tttcggtctc aatactcgct acgctcgctc
    13141 ctgtggagcc gttggcaaag ccaacgttca aatgtaaaca tttgtcccac aaggggagag
    13201 gtgcgcttta gatgaggcgt accatccctc gttcacatca attaatcaat attcttcaac
    13261 tcttcttccg aaagctgctc ttgttggctt tgctcaacat tgccatcttt cactttaaat
    13321 tcaaggtttt ggaaataagc ttcacggaag gtaacataag ggtcttgagc ttgctctaac
    13381 aacgcatctt gttctaataa tttagaacgg gtatctaccc cttgtaccac aaatttagcg
    13441 atagaccaag gtgacccaac ataagtcagc accgaataac cggtttccac cgcactacca
    13501 ataccttgac gaggtgtggt tgctccataa gccggcatca taatatagga gccggaaggc
    13561 acgccgtgag cgcctaaact ctcacctaaa ccacgttgtc cgttatttaa acgtaacccc
    13621 tcatctaaac tcgcccagtc aattaaccca cctaaaccaa acacagtgtt gatccagaag
    13681 cggttgaagt gaaccatcgc ttttttacct tctccttcaa ttaagcggtt tacaaagctc
    13741 accggctcat caaggttatt agcaacatta attaagcctg ttttaaccgg gcttggtaca
    13801 tactctttcc aacctttagc taccggtttt aacacataag ggtctaaata gtcgtaattg
    13861 actttccaca tcgcacggtt aaacccctca agtgggtcgt ctcgcacgcc ggtttctggg
    13921 ttaatgcttg atgaacaagc ggttaaaaat gccacactga gtagcataaa catcggtttg
    13981 aacgacttga gtttcataaa ttgaaccttt tgcagagaaa tttgtccatt gtagcgaagt
    14041 tgataaaaaa tacaaaacaa aaagccgttt tgcctctaga aatctagacg tctagattga
    14101 gatatagttc gcttttgatt acaatacagg caacatttaa ggagcaaaca aatggcagac
    14161 tggaacggcg aatatattag cccttatgcc gaacacggca aaaaaagtga acaagtcaaa
    14221 aaagtgacgg tatccattcc aattaaagta ttggaaattt taactaatga gcgaacccgt
    14281 cgccaaatca aaaatcttcg tcacgcaacc aacagcgaat tattgtgcga ggcttttttg
    14341 cacgccttta ccggtcagcc tttgccgaat gatgaagact tgatgaaaga cagggcagat
    14401 gaaatccctg aagcggcaaa acaaaaaatg tgtgagctgg gaatagaccc ggacgaatgg
    14461 caatattaga cacaccttgc aactgcgagg ttctttttat gttttaagga gactttatgt
    14521 atcaacaatt aacaacagaa gcacgttggg ctgtgttgct tacgctgatt tatctgctcg
    14581 gctgggtagg ttttgcttac ttttcaccgc aaggcagagg cattttcggc tttccgattt
    14641 ggtttgaact ttcttgcatt ttcttacccg tactatttag cttagttgcc accattgtcg
    14701 tcaaaaaagt gtataaaaat atcgatcttg aggtgaataa tgaatagtga aatgatttta
    14761 cccctgattg cttatttaat ttttgtgttt ggcgtagcgt tttatgctta ccgtaaacgc
    14821 caaggcggaa gctttatttc ggaatactat atcggtgggc gttcaatgtc gggctttgtg
    14881 ttagcaatga caaccgccgc cacttatgtg ggggcaagtt cctttatcgg tgggccgggt
    14941 gctgcctata aatacggttt aggctgggtg ttactggcaa tgattcaagt gcccgcagtg
    15001 ctactctctc ttggagcatt aggcaaaaaa tttgccttac ttgcccgcaa gcataatagt
    15061 gtcaccatta acgatatgtt attagcccgt taccaaaaca aatttgtggt ttggattgca
    15121 ggactagcct tattactttc gttttttgcg atgatgacgg tgcaatttat cggtgccggt
    15181 cgcttacttg aaaccacact cggaatccct taccaaacag cggtaatgat ttttgccatc
    15241 acagtcgggc tttatacctt tatcggcggt tttagagcgg tggtgctaac cgatactatt
    15301 caaggtttag taatgatagt cggcacaagc attttactcg ctggtgtgat ttatgccaca
    15361 ggcggagtgg aaaatgcaat gcacaccctt gaagccatta acccacaact taccacccct
    15421 tacggcattg acgaacgccc gcttgatttc acctttatga cttcattttg ggtattggtt
    15481 tgctttggtt taatcggctt accgcatatt gcggtcagaa gtatggcatg caaaaacagc
    15541 caagccttgc accgagcaat gattatcggc acggtagtca ttgcaattct aatgtttgga
    15601 atgcaccttt caggcgtatt aggcagagcg gttgtgcctg atctcaaagt gccggatcaa
    15661 gtcattccaa cactaatggt acaagtgcta ccaccggtgg ttgccggtat tttccttgcc
    15721 gccccaatgg cagcgattat gtcttcgatt gactcaatgt tgattcagtc gtcttcaacc
    15781 ttaattaaag atctctatct ggcaattaag ccgaatgcca ttaataacga gaaaaaaatc
    15841 aaattgttct ccactattac tactcttact tttacggtat tactcgtgtt tgccgcccta
    15901 accccgcctg agatgttaat ttggctgaac ctactctctt taggtggttt agaagcgact
    15961 ttcctatggg taattgtact agggttgtat tgggaaaagg caaatgccac cggtgctatt
    16021 tactcaatgc tggcaggctt aagttgttat gtattaatga ctacctttaa gattgctatt
    16081 tttagcttcc acgccattgt gccttcactg ctaattggtt tgattgcttt cttaatcggc
    16141 aaccgatttg ctcctaaggt gtaaaataaa ataggcatag tggtatggaa gttcactatg
    16201 cctattttgc aaaatttccg ctcaattcaa ccgcttgtag ttaataagtg gcattatttt
    16261 ctggattatt ctgcttagtc gccattctaa gtaacgtata acctaaaatc gctgaaaccg
    16321 cagagccgag taaaatacct aatcgagcta gagcggtaat actttcccca gcctcactta
    16381 catcaaaggc aagacttgct aagaacatcg acattgtaaa accgataccg catagcaccg
    16441 caatggcaaa aatttgctta aaattaaccc cttgcggcag gctggcaagg cggaataata
    16501 ctgctaaata actaaaaccg aatacaccta aggttttgcc gataattaag ccgagcgcaa
    16561 tacctaacgg caatggtgat gagagttgct ccattcccat ttctaataag taaacgccgg
    16621 cattagcgaa ggcgaagatc ggtaaaatca tataagcaca ccaaggggca agaatatgtt
    16681 ctagctcctc tgccggtcgt tccccatgtt tacctttcag cggtacgcag aagccgatga
    16741 tcacgccggc aagggtagcg tgaacccctg attttaaaac ggaagtccat agcactaagc
    16801 ctactaccaa ataagcacag agtgaggtca ctttaaagcg gttaagtagc actaagccga
    16861 taatcgcaat cgcggcaata gttaaggctt gcacactgat ttcttgcgaa tagaaaatgg
    16921 cgattaccac aatcgctcct agatcatcaa taatcgctaa tgccaacaaa aatgccttta
    16981 aagccaatgg cacacgagtg cctaataacg ccacaatgcc caccgcaaag gcaatatcag
    17041 ttgccattgg aattgcccaa ccattatgat attcagggtg gttttgatta atcgcccaat
    17101 aaataatcgc tggaacaatc ataccaccta ctgctgctat cgcaggaaaa atagctttct
    17161 tataacttga aagcgaacct tcaaacaact ctttttttac ttccagcccc accaacgtaa
    17221 aaaacactgc cattaagcca tcgttaaccc agagtaatag cggtttattc aaggcaaatt
    17281 caccaaactg tacactaaca atcgtttgta aaaactcaaa atagaaatca cttaaggagg
    17341 tgttggcgca cacaattgct gcaaaagcaa aaaccagaag caatacgcct cctgaggctt
    17401 cagattttaa aaattctttt
//
LOCUS       DANMGB010000040        17383 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.040, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000040 DANMGB010000000
VERSION     DANMGB010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17383
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.040"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(310..1495)
                     /locus_tag="PXG19_000985"
                     /pseudo
     CDS             complement(310..1495)
                     /locus_tag="PXG19_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1654..2211)
                     /locus_tag="PXG19_000986"
     CDS             complement(1654..2211)
                     /locus_tag="PXG19_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL6066299.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQTNTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMESLDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            complement(2204..3853)
                     /locus_tag="PXG19_000987"
     CDS             complement(2204..3853)
                     /locus_tag="PXG19_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6066300.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPAHYSSDEEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLNKSLSARELATELEGDGYIIHYTLANKMERCVLYLYPHIPEVLF
                     KGLGHTQIDKLLAIRNNAEEVWAAHQFDTDITFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALDGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQA
                     AKFEPVIKNENKSVATESAKNVIDDVIDDNESDNEQNNAITDLSQLDAPLLDSQDNQT
                     EDYLSQIAHNFGLTPGMSIQEQREQRAESNGLTFACEGRQPVEDIWLIHPARQYRSEA
                     YSLALDIAESVGIDHLVEHVVKQPVDYTYAMKPTDSELSPSVLTLYSFLSMLQTAKHK
                     DENNCVLDSNFLFELDDITLVKLFRLIRVSRHIHQQGGEND"
     gene            complement(3862..5226)
                     /gene="dnaB"
                     /locus_tag="PXG19_000988"
     CDS             complement(3862..5226)
                     /gene="dnaB"
                     /locus_tag="PXG19_000988"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6066301.1"
                     /translation="MSNPNKPTTHLYSAEAEAAVIGGLLLDNTLFDDVIGKINSADFY
                     FGVHQALFKGITDLIEVGKPADILTLDEYLKQKNLLKEIGGFAYLAEVSKNTPSAANV
                     GAYADVVLLHSKHRQLLKLGQFIVDQTQTVKTPEKLESVIDEVEKKMTEFSLSDNTKS
                     ATDLSDIFASMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADRLDDEE
                     WAKLTAAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPSAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSLEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEIYDEDSAFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRAS
                     TASH"
     gene            complement(5238..6062)
                     /locus_tag="PXG19_000989"
     CDS             complement(5238..6062)
                     /locus_tag="PXG19_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL6066302.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTAIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETIRQLCALLMPQFAQSHFSE"
     gene            complement(6156..6241)
                     /locus_tag="PXG19_000990"
     tRNA            complement(6156..6241)
                     /locus_tag="PXG19_000990"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6205..6207),aa:Leu,seq:caa)
     gene            complement(6553..8013)
                     /gene="xseA"
                     /locus_tag="PXG19_000991"
     CDS             complement(6553..8013)
                     /gene="xseA"
                     /locus_tag="PXG19_000991"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL6066303.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            complement(8164..8240)
                     /locus_tag="PXG19_000992"
     tRNA            complement(8164..8240)
                     /locus_tag="PXG19_000992"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8204..8206),aa:Met,seq:cat)
     gene            8450..9556
                     /gene="mltA"
                     /locus_tag="PXG19_000993"
     CDS             8450..9556
                     /gene="mltA"
                     /locus_tag="PXG19_000993"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL6066304.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            9569..10018
                     /locus_tag="PXG19_000994"
     CDS             9569..10018
                     /locus_tag="PXG19_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066305.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(10052..11569)
                     /gene="purF"
                     /locus_tag="PXG19_000995"
     CDS             complement(10052..11569)
                     /gene="purF"
                     /locus_tag="PXG19_000995"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6066306.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(11584..12087)
                     /locus_tag="PXG19_000996"
     CDS             complement(11584..12087)
                     /locus_tag="PXG19_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL6066307.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(12233..12694)
                     /gene="rnhA"
                     /locus_tag="PXG19_000997"
     CDS             complement(12233..12694)
                     /gene="rnhA"
                     /locus_tag="PXG19_000997"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL6066308.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(12787..14118)
                     /gene="argG"
                     /locus_tag="PXG19_000998"
     CDS             complement(12787..14118)
                     /gene="argG"
                     /locus_tag="PXG19_000998"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL6066309.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            14302..15342
                     /locus_tag="PXG19_000999"
     CDS             14302..15342
                     /locus_tag="PXG19_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6066310.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(15407..16165)
                     /locus_tag="PXG19_001000"
     CDS             complement(15407..16165)
                     /locus_tag="PXG19_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL6066311.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            16292..16606
                     /gene="yhbY"
                     /locus_tag="PXG19_001001"
     CDS             16292..16606
                     /gene="yhbY"
                     /locus_tag="PXG19_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL6066312.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            16667..>17383
                     /locus_tag="PXG19_001002"
     CDS             16667..>17383
                     /locus_tag="PXG19_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL6066313.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKK"
BASE COUNT         5016 a         3599 c         3345 g         5423 t
ORIGIN      
        1 tacactgatt attttttact cactgtagaa cccctctaca ctgattgttt tttaatcact
       61 gtgtaccccc tacacactga ttgttttttg ctcattgtag agtccctcta cactgattat
      121 tttttactca ctgtagaacc cctctacact gattgttttt taatcattgt aaacagtgtt
      181 tacagtgatt attttttagc ctttgaagcg ggccgcttca ctgattattt ttcactcact
      241 gtgtaatccc tacacgctgt ctgttttttg ctcgctgtta agccccttaa cagtgattgt
      301 tttttaacct tattgtaaaa gtaattcagc tctaaacttc tgcatacggc tcgccatttg
      361 ctctctgtct gctggagtta ataccggttt ctcagtaggc tgctcagtca gtttttgtat
      421 agaatgagca gaattattgt tagtctgatt ttgtgaggga agattttttc ctaattcaaa
      481 atagtagggt ttaaattcac cctgcttcgc ccgctggata agcgtataga gataaccttt
      541 cggttttttc acatcctgct tttgaataat gcgttgttgt gcttccagca aaatagcttg
      601 gcataaaccg agatcgaatc ctttcattgc ctgtgcagtg agtttttgtt caagtgaggt
      661 tagtgggatt tcttgtggcc aagtaatttc gctaggttcc ccagtacagt acttattaat
      721 atataaagta ctgtacatct gacttcctta atggaagtaa gtctaaaatc aatgacttat
      781 cttcattttt agccctaact tccttattgg aagtctggtt ttttgaggat tttttcctga
      841 cttcctcatc aaaatcccta acttccatag tggaagtcag gatattttgt tgaattttgc
      901 ttaattcttg ttctgtttgc gatggctgtt tatctttcac cagctgctgt tgctggtatg
      961 tttgataacg actttgcaaa cagtctaaat gagagacata atgccatttg gttttgtctg
     1021 tcattagact ttcaacaata tgatttgcca caccattaat aaggctatct ttatgtttgg
     1081 tgcatttatc taaaaaagag agatagtcgc tatttaattg aattgcatct aaaattggca
     1141 caggttcatc gtgcaggata tacacattac cttgtacata acctcgctca tcacgcactg
     1201 tttcacataa agtaagccag cgagtaagac ggagtaaata gagtgtttga gtcacgactt
     1261 tttccgataa tttagcctcc gcataaggtc tatcggataa cattttgctg agcgtctcat
     1321 aagagggaaa taatcctcct tgaaaggcct gaacattgca cttaatgagc tgccaagcaa
     1381 actttgctct tggtgtaagg cagggatctt gtaataatcg agtagggact gtttcgtgtt
     1441 ggttgccaaa aaatagtaat ccatgccctg ttggcttatt cgtactgcta aacattgttt
     1501 ctctccacta ggataaaaga gtttttctct tgctattctc cctcctatga ctataatgca
     1561 cgggacttcg gcaaagtcct tgtaattcat aggatagata tacaagaccc aatatcgaat
     1621 gccccaaagc tccaacttcg gggcatttgt tttttactta tgttttgaat accattcgga
     1681 aactagtttc caaacaacag ttagattcat attaccttcc tcagcaatca ggcaaagaag
     1741 ctctaaccct tcttgtgaat ctaggctttc cattcgttgt ttatatcgtt gccaaatctc
     1801 ccaaatatga gtggattcct catcacttgc tgcggctttc cgtcccatct tctcttcaat
     1861 gccgagtaat tgacggcgtg ctgaaacctc tgatgtcgat aaaccgaaat actggtgcag
     1921 catctcaata gaggctccca gtaataaagc ccggtctata atttgtcgct gttgagtatt
     1981 agtttgtgca attgccagta atttccaaaa agtctcgtgg ttaatctcta cttttgcaaa
     2041 agacactacg gagttgctaa tatccataat ttcatcaata ctgagattat tgattgcttt
     2101 tagttgctct tcagaaaatc ccatttttaa acaaggatgg atatttcctt ctttaatatt
     2161 gagcagggcg ttaccaatca atgcttcatt tacggtaatt ggcttaatca ttttctcctc
     2221 cttgttgatg aatatggcga ctgacccgaa tgagacggaa aagtttgact aaggtaatat
     2281 catcaagctc aaacaggaag ttggaatcta ggacacagtt attttcatcc ttatgtttag
     2341 ctgtctgtaa cattgaaagg aatgaataga gtgttagaac agacggtgaa agttcactat
     2401 ctgtcggttt cattgcataa gtgtaatcca caggctgttt cacaacatgt tcaaccaagt
     2461 ggtcaatgcc cacactctct gcaatatcta aggcaaggga atacgcctct gaacgatatt
     2521 gacgagcagg atgaatcaac caaatatctt caaccggctg gcgaccttcg caagcgaaag
     2581 tgagcccatt ggattctgct cgttgctctc gctgttcttg aatgctcatt cccggtgtta
     2641 gtccgaagtt atgagcaatt tgggagagat aatcctcagt ttgattatct tggctatcta
     2701 acaatggagc atctagctga gataagtcag taatggcgtt attctgctca ttgtcacttt
     2761 cgttatcatc tattacatca tcaataacat ttttagctga ttctgtggca acagatttat
     2821 tttcattttt gataactggt tcaaattttg ctgcttgttg ttcctgtctg gtattgattt
     2881 gatcgactgt tttttcaact aaattatcaa tttcttgttg tttagccgct atttttttga
     2941 atttttgttc atctaagtca atatctagat aaagtgtttc aaaactcact tttccatcta
     3001 aagcttcaac cattgccgta atcaattcac tttggaattc ttttgcttga aatggtgtag
     3061 cttcattaaa tttggataaa ttttctgacc agagcgattc aaaagtaata tcagtatcaa
     3121 attgatgggc tgcccatacc tcttcggcat tattacgaat agctaataac ttatcgattt
     3181 gagtatgccc taaaccttta aatagaactt ctggaatatg gggatataga taaagtacac
     3241 atcgctccat tttattagcc aacgtatagt ggataatata gccatcaccc tctaactcag
     3301 tagctaattc ccttgctgaa agtgatttat tcaatttctt ctcgtaatat tctttcgcct
     3361 gtaaaatacc aagagctttt tcaataaatg acaaatccgc acgggtatca ttttcgatca
     3421 aatgcccgat aagtaaattg agttcggctt cgacactgtc ggcagtatca ccttgccaag
     3481 gcttatattg gcaactgata gaccagaatt tcggatcttt ggtctcagta aacaattctt
     3541 taagtgcctg aatacgagta ttaccgccgt cagcgataat gtaaaaatct tctcccggac
     3601 ggcgggtaat attaggttta tgatctaacc cacgacgccg gattgactct ttgatcatct
     3661 caaagttagg attacgggtt tttctagggt tatgttcata cggccgtaac ttatctaatg
     3721 tcaccgtaat atattcctca tcactactgt aatgagccgg tgtcgcagtc tgataggagg
     3781 gtgccgtatt tgaaataggt gaaacattta gccccttcgc tatagctgct aatctttttt
     3841 catcttttgt cataatctgt cctaatgtga tgctgtgctt gctctattct caaaaagtgc
     3901 aaactcactt ctaaaattgg tcattactga agtcagcggt ccgtttcgtt gtttaccgat
     3961 aataatttca gcagtgcctt tgaaggcgga atcttcatca taaatttcat ctcgatagat
     4021 gaataaaatg acatcggcat cttgctcaag tgagccggat tctcgtaaat cagagttgat
     4081 agggcgttta ttggcccgct gttccaatga gcggttcagc tgagataaag cataaacagg
     4141 gcaatccatc tctttggcta acaacttaag tgagcgagaa atattcgcaa tctccaaatt
     4201 gcggttttca tagcgttgcg aagtctgcat aagctgaata tagtcaataa aaatggctga
     4261 cggttttcca tacttacggg cattttggcg aaccttagtt cttaattttt gaggagtcag
     4321 actaccttca tcatcaataa ctaagcgatt tttccagtgt tcaaggatat accccattgc
     4381 agctgtcaat tttgcccatt cctcatcgtc caagcggtct gcttgtcgaa tattttgcaa
     4441 tccgactcgg gcacgcatag caagaaaacg ttgtaaaatc tgatctgccg gcatttccat
     4501 actgtgatag aacacaggag ccgactcgaa tttttcaagt gtatggtagg caatagtttg
     4561 agaaaatgcg gtttttccca tcgaaggacg ggcaccaatc acaattaaat cacccggttg
     4621 cccaccggta gtcgcttcat cgatgccttg aatacctgtc ggtgttccag tcacaggatc
     4681 accattttta gccgaaagct ccatacgaga gagcatactg gcaaaaatat cacttaaatc
     4741 tgttgcagat ttggtattgt cagaaaggct gaattcagtc atttttttct caacttcatc
     4801 aataactgat tcaagttttt ccggtgtttt cacagtctgt gtctgatcga caataaactg
     4861 ccccagtttt aaaagttgcc ggtgtttact gtgtaacaga accacatcag cataagcccc
     4921 cacattggcc gccgaagggg tgttttttga aacttctgca agataggcaa aaccgccgat
     4981 ttccttcaac agatttttct gttttaggta ttcatctaat gtgagaatat ctgcaggttt
     5041 ccccacctca attaaatccg taatcccctt gaataaggct tgatgcacac caaaataaaa
     5101 gtcagccgaa ttaatcttgc caatgacatc gtcaaagaga gtgttatcta ataacaatcc
     5161 cccgatgaca gcggcttcag cttctgctga atagagatgg gtggttggtt tatttgggtt
     5221 agacataaat cccccaacta ctcagaaaaa tgtgattgtg caaactgtgg catcagtaat
     5281 gcacaaagct gacgaatggt ttcatattca gcttggctct ggcgatagac aggttttgaa
     5341 aaagttgccg cttctcggta tgccacacga tcaggcacag aaaattccag taatgttttg
     5401 ttttcatcaa actcattttg gaagagagta tgcaggtagt cggaaaccaa tttgacatct
     5461 ttggtatgat caacacagtt aatcattgct tttaacggtg gcagggtaaa accaaaggct
     5521 gtaaaagttt ctagatcttg atacatacca attgtgccac gaataaattc tttagctgac
     5581 aagatatgag gaagaatcgg gcagaaaaga acatcagcag ccaataccga catatctaca
     5641 gtaatatctc gagtgccacg ggtatcaatg ataatgacat catagccttc aattttctgg
     5701 agcagtaaac taaaacgtaa agccccgtcc ggtgagtctc ttagcattgg gctgatttta
     5761 tttgacgggt cattagactg gatcaagtca agatttggga tagccgttct agaaataatg
     5821 tgggtaggat ctacatcttt aaaatgcaga aattcataag ttccaccggg agcttgatat
     5881 tccaactcat aataagagct taatgtgggt tgagtatcgg tatcaataag aagggttctt
     5941 agaccgtgtt ctgcacagaa tgcaccaatg ttagcggcat tcgtactctt ggcagagcct
     6001 cctttggtcg aagcaatagt aatggtaaaa ggtttgtttg taccgttttg taatggtttc
     6061 ataatttact ctcttaacaa agttgaagtt aaggagtatt ggcattataa actgtatatt
     6121 tagagtgagt attatttgaa aggaacgcag ttgaatggtg cctgaggtcg gactcgaacc
     6181 gacacggtta ttcaccaatg gattttgaat ccatcatgtc taccaatttc atcactcagg
     6241 ctgagagtgt tttttattca atcgccagta tttcctatta gtctacgcaa aagattttga
     6301 atccgctgcg tctaccgatt tcgccacact ggcttaattt ttgcacgatt atagggaaat
     6361 atgaccgctt gtgcaagcgt aaaaatgcct tttgaaatcg gttgatttaa aaatcagcac
     6421 tcaattcatc tttacaaaaa tagttatgca catcacctgt ggataactaa gtgaacaacc
     6481 ctgtttataa atatttaacc tactgatttt actataaata attttaaaaa ttggcagcgt
     6541 tcaaaatttc ccctacaaaa aatccactac ttgacttatt atttttcctg tttttagttg
     6601 ggtgataata gcctcaccac gttcaatatt ttctgttgaa gtaagcgttt taccgtcttt
     6661 agtttgggta attgagtagc ctctggtcaa gattttcaat gggctaagtc catcaagttt
     6721 agtgcataac tcttgaaaat gtcgctgctc tttcagcatt attttttcga tagaataagc
     6781 caagcgttgc gacatttttg ccaccatcgt ttgttgctga taaagttgat aaggtagcgg
     6841 gttgcgttca aaccgttgcg taatgttttt ccatttttgc tgttttttgc tgagttgctg
     6901 ctccatttgc caatggagtt tcagctccaa ttgcttaagc atttgggatt ggcgttcaat
     6961 ctgcttttgc ggatgttggt gaattaaacg gacatttagc tctttcccca cctgcttttt
     7021 ggctgcaaca agtgcataaa ttgcctgctc gaggcggtat tccatataat caaaacgttg
     7081 ctgttgcgat tgaatttgtt tgcttggatg ctgagcattc aggcgtaagg ggagttgttg
     7141 gaaacggtta aatttatggt tccaaactcg gtcaaaggct aaattcactt tatcaaactg
     7201 atgttgtaat tggcgtttca attcattttg atctctgctg actaattccg cagcagccga
     7261 aggcgttggt gcgcgcaaat ctgcaacaaa atcagcaatg gtcacatcgg tttcgtgtcc
     7321 caccgcactg ataatcggga tttgtgaatg ataaatggca taagcgacac tctcttcgtt
     7381 gaaacaccat aaatcctcta atgaaccgcc acctcgcccg acaattaata catcacactc
     7441 attgcggcgg tttgccagtt caatcatatt cacaatatct tgcgttgctt ctttgccttg
     7501 cacgagagcc gggtaaataa ccactgataa gctcggatct cgtcgttgca aaatatgtaa
     7561 aatatcttgt aatgcggctc cgcttgagga ggtaataata ccaacggttt taacaaaagt
     7621 aggaattggc tttttatgct cttgagcaaa caagccttga gctgaaagtt ttgctttaag
     7681 ttgctcaaat tgctgctgta acaagccttc gcccgccggt tgcatactct caataatgag
     7741 ctgatagtca cctcgtggct catagagtgt aacacttgcc cgcaccagca cctgcatacc
     7801 gttttgtggg cgaaaattca ctcttacatt tttcatttta aacatcgcac aacgcacttg
     7861 tgctttgtca tcttttaaag tgagatacca atgccccgaa actggttggc tgaaatttga
     7921 gatttcgccg gttagccaaa tatggctcat ttccatttcg agcaaatggc ggacggaata
     7981 gttgagttgg gtaacagtta aaatattgct cataataatc aaaaaagcgt aaatgtagta
     8041 gaagtgtaac gagaaatgaa agcgagagga agcttttgca gtcaacaagc ggttattttt
     8101 tgctgttttt tggcaaataa aacgaaaacc ctcgatgtga ttcactatcg agggtttgga
     8161 atgtggttgc gggggccgga tttgaaccag cgaccttcgg gttatgagcc cgacgagcta
     8221 ccaagctgct ccaccccgcg tctgatgagg ctataatata tcaatttgac ataatgacaa
     8281 gtaaaatcat acaaaattgc tctaagtgat gtaaattaca acagatatag tatcaaaata
     8341 cgcttattgt tgtaaaaaca atcaaattat attctggttt tattttgtcg ctgtttttgc
     8401 tattcttctg tttatttttc acattttatt aacgatataa ggatattcga tgaattggaa
     8461 agcatataaa aaagctattg cggcagctag cgtggtagcg attgcaacgg tattagtggc
     8521 gtgttcgtct tcaggccaaa aaggcaaaac aacctcttat gatgcggaaa aagctaaatt
     8581 tggagcaaaa tataatggtc gtcactttat gccttatggc acacattttc aagctggacg
     8641 tttaggatta aatgctgctc ctgttaatca actagacttt ttacagcagc tttctaatgt
     8701 cagagcctat agtagcttgg cagattctta tgctatcgct tacggaaaaa tcagtcgttg
     8761 gatctcatcg ggcggtaata ttaatgattt agcaaaatat ggtattagta ctcgtttaat
     8821 gcgtggcgaa gatggctacc agaatgtgtt aatgacaggg tattactcgc cggttatcaa
     8881 agcccgtaga acgcctcagg ggcaatacca acacccgatt tatgcgatgc cgtctagcaa
     8941 acgtttttca cgggcggaaa tttacgcagg agcattgcaa ggtcagggct tagaactggc
     9001 ttatagtaat tcaatgctcg ataacttctt attaggtgtt caaggtagcg gttacgttga
     9061 ctttggtgat ggtcgcttaa actattttgc ttatgcaggg caaaatggct ttaaatatgc
     9121 cagcgttggg cgtttattag tagaagatgg cgaaattccg aaagagaaaa tgtcagtgca
     9181 ggctatccgt gaatgggggc aacgtaaccc tagccgtgtt caaggtttgt tggagcgtaa
     9241 tccatcgtat gttttcttta aaaacgatcc taccggtcag gtaaaaggct ctgccggtgt
     9301 gccgttagta ccacttgcat ctgttgcatc agatcgtagc attgtgccat caggtagcgt
     9361 gttgttggtc gaaatgccgt tgattgatag caaaggaaat tggaccggca aacacgaaat
     9421 gcgtttaatg gtggctcttg atgttggcgg tgcagtgaaa ggccatcact tcgatttata
     9481 tcaagggatt ggcgataaag caggccatat cgcaggttta atgaaacatt acggccgtgt
     9541 ttgggtatta aattaataca gggtaactat gttaaaaaaa ctatctgcca tattcttact
     9601 tctaccgagc gccgtgcttg caaataattt gcaaaatata accgcttcaa ctgagcctaa
     9661 atataaaatc tcagaaatag atgtcagaat tttgatacgc cagctcaata atattgagca
     9721 atgtatctat cctgagttag ctaaacccgg ttaccagcaa atctacgcaa attggaatct
     9781 ggctgaaaat ttaacgatgc aatattttga atatcagctt ctaaaagagt tgctcggaga
     9841 ggaaaatcag aaactgatgc aaaatgatac gctttctacc gagtatttcc atttactgca
     9901 ttctcgttta aatcaccaaa aagcaaatgt agatcccgaa aaatgcgata catttaaacc
     9961 tagatataaa gagatttata aaagtatgga aaatgcactc actaagaaaa atcaatagta
    10021 aaaaactcgc agttttcact gcgagtttct tttatctttc gttatgaatt tctaaattgg
    10081 tggcttgttt tgccgcctct gcttttgctt tatcgtttcg agatcttgct atactgtcta
    10141 aatagcattt atctacatca cctgtaatat attctcctgt aaatacagag tcatcaaagc
    10201 gatgaatagt cggattttcc agttgaatag acttataaag tgcttcaagg tcttggaaaa
    10261 tcaatttatc cacccctatc atctgtgcaa cctcttccac tgagcgatca taagccacta
    10321 attcttcaca agtcggcata tcaatgccat acacattcgg gtagcgaatt tccggtgcgg
    10381 cagaggcaaa ataaacccgt tttgcaccag ctgctcgtgc catttccacg atttgttcag
    10441 acgttgtacc tcgtacaata gaatcatcaa ccagtaacac gcttttgcct ttaaattcag
    10501 aggcaatcgc atttaattta cggcgaaccg agcttttacg ctgtgcttgc cccggcataa
    10561 taaaagttcg agctacatag cggtttttaa caaacccttg acgatagggt ttatacaaca
    10621 tattagcaat acgtaccgca atatcatttg aggtttcagg aatcgggatc accacatcaa
    10681 tatcatcgat aattcgtccc cattcacgtt taattttctc acctaataat tcgcccatat
    10741 gcactcgtgc agaatataca gaaacgccat caatgacgga atcaggacgg gcaaaataaa
    10801 catattcaaa aatacaagga ttcagttttg gattatcggc acaaatttgc gaatgtaatt
    10861 gcccatcaaa ggtaacataa atcgcttcac ccggcagcac atctcgcaca aattcaaacc
    10921 ccactacatc aagagccaca ctttccgaag caaacatata ttcggtttta ccctcgattt
    10981 cacgtttacc cagcactaac gggcgaatac cgaatgggtc acggaaagca accataccgt
    11041 gtccgataat catcgcaatg caagcataag caccacgaat gctatcattg gttttacgaa
    11101 ccgtttcaaa gatattgtct gggcttaaat gctgagtgga atagagatct aaaaagtaag
    11161 caaaaatatt aagaagggat tcagaatcag aattagtgtt cacatggcgg cgggcttcgt
    11221 tgtataagcg agctttaagt tccgcattat tagttaaatt accgttgtga actaaggtaa
    11281 taccgaaagg tgaattgaca taaaatggct gggcttcaga cacacttgag ctacctgctg
    11341 ttgggtagcg aacgtgacca attccaacat tgccttgtaa tctcaccata tgctcttgct
    11401 ggaaaacatc gctgactaag ccgttagctt tgcgtaagcg gaaacgattt tcatcgtcta
    11461 tggtgacgat acctgcggca tcttgtcctc ggtgttgaag taatgttaaa ccatcataaa
    11521 tcgcctgatt caccggcgaa ttcccaataa taccgacaat gccgcacata tagaaaaacc
    11581 tctttattta gtcgtgttta aaaaactgga atttgcttgt aactgttcaa agaaccactt
    11641 cacaataaag tcaaaatgcg gaattaatag cgatgatttc cataattccg tttggcttgc
    11701 ttgggtaaag gtatctaaga aaaataaaat agccgacaca attaaaatac cacgcaatgc
    11761 cccaaaagca ccgcctaaaa tacggtcggt gatagacatt ccgctcaaat caatcacttt
    11821 gcctaataaa ccgttgatca caccacaaac aattaaagtc aaaatgaaca gaatcgccgc
    11881 tgcaatacca ttgcgtaaaa attctgaatt ttgcaaataa accgaattaa tttgtgtgag
    11941 ataaccgctt aaataaggat aaaacgagct tgccacaaaa aaggcgatta cccaaccaag
    12001 tagcgataat gcttcattgg taaaacctcg ccataaactg ataagcactg aaaaagcaat
    12061 gattccgata acaattaaat caaccataac acaccttaaa gcgtaaagct ctcctattct
    12121 acaaaaaaag aaaacgtttg cgtagcacta tttcgctaaa aataagtgct ttatgcaaat
    12181 acaagcggtt aaattcggta aaaaatttac acaatccgac cgcttgtaaa acctagtctg
    12241 caatataacc aacatcgtcc aacgttggat tatttgctcc ttgtttagcc agctcatcgc
    12301 aaatctcatt ttcacgatgt cctgaatgcc ctttcaccca actccattca atttggtggc
    12361 gttgaatttc ttggtctaaa gcaacccata aatctttatt tttaactggc tttttatcgc
    12421 tggttttcca gtcatttttc ttccagttaa aaatccattt ttggatcccg tttttcatat
    12481 attggctgtc actattgagt tgcaccttac aaggctcttt tagcattgct aaagcctcaa
    12541 tcaccgcccg caattccatt cggttattgg tggtttgaaa atagcctttg ctcacggttt
    12601 tttcgtaccc gttataacgc agcaaaatac caatcccccc tttgccgggg ttgcctaaac
    12661 aagaaccgtc tgtaaaaatt tcaactaatt tcatcatcac gctttgaaaa taaaagcccc
    12721 aaagcattaa ctttggggca gcttttaggc taaattctaa aagttatcag aatggagatc
    12781 aactgattat ttttttccaa gttgtggaat cacgctatta ttagccgcca ataaacctgc
    12841 atcggtataa actgctaatt taccacgggt atcgacaata tctaagttac gcattgttaa
    12901 ttgaccgata cgatctgccg gcgtaaacgg tgcatcttct actttttcca tacttaaacg
    12961 ttctgcttcg taggttaagt ttggcgattc agtgttaaga atagtgaaat cgttaccacg
    13021 gcgtaactca agcgtgaccg taccggtaat cgcttttgcc acccaacgtt gagccgtttc
    13081 acgcaacatt aaagcttgcg ggtcaaacca gcggccttga tacaataaac gccctaaacg
    13141 taatccgtta atgcgatatt gctcaatcgt atcttcgttg tgaataccgg taactaaacg
    13201 ctcgtaagcg atgtgtaata atgccattcc cggtgcttca taaataccac gagatttcgc
    13261 ttcgataata cggttttcga tttggtctga cattcccaaa ccatgtctgc caccaatgcg
    13321 gttagcctcc ataattaatt caacggcatc atcaatacgt ttaccgttta acgccaccgg
    13381 cacaccttct tcaaaggtaa cagaaacagt ttccgcttta atttcaactg attcgtccca
    13441 gaatgccacg cccataatcg gttttacgat cttcataccg gtgcttaatt cttctaaatc
    13501 tttcgcttcg tgggttgcac ctaacatatt cgagtctgta gagtaggctt tttccaccga
    13561 cattttatag tcaaaaccgt tttcgattaa gaatttagac atttccaagc gaccgcctaa
    13621 ttcatcaatg aatagttggt ctaaccacgg cttataaatt tttaattttg gattggttaa
    13681 taaaccgtaa cgatagaaac gctcaatatc gttaccttta aaggttgaac catcgcccca
    13741 gatattcaca tcatcttctt tcattgccgc aaccaacatt gtgccggtta ccgcacgacc
    13801 aagtggcgtg gtgttgaaat acggaatacc gccggttgaa atatggaaag caccgcattg
    13861 aattgcggca atgccttcgt gagctaactg ttggcgacag tcgattaatc gtgcattttc
    13921 agccccatat tccatcgctt ttttcggaat tgcgttgtaa tcatcttcat ccggctgacc
    13981 taaatttgcg gtgtacgcat aaggcactgc ccctttttta cgcatccata acagtgctgc
    14041 tgaggtatct aaaccgcctg aaaaggcgat acccactttc tgccctaaag gtaaagcttc
    14101 taaaattgtt gctgacatac gaattcctat aaattttgaa agtaaaaata ttcaaacgca
    14161 aacgcttacg ttcaagcaaa atattctagc tgaaaagtag taaaaattca tctaaaattt
    14221 agcccgatga tttgcaaatt ttttgtgaaa tttgaccgct tataatttac tgaaaaccta
    14281 aaagcaatag agaaaatcag aatgaaaaaa ctactcgtaa tccgtaatga taaaattggg
    14341 gactttatgg tctgctttcc ggcatttgct atgttgaagc aatcaatgcc gaatgtggaa
    14401 attaccgctc ttgtgccaag ttatactgct ccacttgccg agctttgccc ttctattgat
    14461 aagattatta ttgatacggc gaataaaaaa gataaaaatg aatttaaccg tattttacaa
    14521 gcggttaaaa atgagcaatt tgatgcggtt atttgttttg tttcagactg gcataatgcc
    14581 aaactcacct ggcaaagtgg gattaaatac cgcctcgctc cagcaactaa attattccaa
    14641 tttttatata accaccgttt aacccaacgc cgttctcaat cagcaaaagc ggaatccgaa
    14701 tataatttgg atttagcccg tgctttttta agcaaacaca atataccgat tgttgaacct
    14761 cacacgccat acttaagtgt tgaacagcaa accgtccagg cacaaaaagc aaaattatgc
    14821 gaacaactca atattaccac cgttaaaaag tgggtatttg tgcatagttc aaccggtggt
    14881 tcggcaaata atttatctat agaacagtat gcagagttaa ttcaaggtat tttggcagaa
    14941 tttgattgct atgtggtact caccgcaggg aaaggcgaaa gcgaaaaagc tcagcagtta
    15001 gctcaacaaa tcaatcacaa caacgtggtg gtttatgata aaaatgaggg gttacaagat
    15061 tttacacatt cgcttgcgtg tgcagatttg tttattgccg gctcaaccgg tccgttacat
    15121 attagtgggg cgttaaatat tccaactatt ggcttctacc cgagccgact ttctgccatt
    15181 ccacgccgtt ggaaaccgat taatgatgcg aataaacaca ttgcattttg cccaccgtct
    15241 gataaagcct cacaaatgaa tttaacttta atttctattt ctgaggcatt aaaaacgata
    15301 gtaccgttta ttcggagaat gtggaatact ccctctctct gataaaattg ctaaacgcaa
    15361 ttttatctat ctctctccca ctagagggag agagtactga aaagcatcat ttccgagtac
    15421 gattccacaa atccgcatat tttacgaaag tagaatgtgc cgaaagaact gccaataaaa
    15481 atccttgctt gccatctaaa aaaccggctt ttaatagata cattttcaca aaacagccga
    15541 tggcgtgagt cacgccatca aataagctgg ctgttttgcc tgcatttgcc cgttggattg
    15601 cccacgcttt agcgtaactt gccgatttta ccaaatagtg gtgaatatct ttataggtga
    15661 aatgcagcaa atcgccttgt agtttctgga tttttgcctc ttttgggtaa tgtacttttt
    15721 cgtgaaccaa ttcatcacca tatttggcaa attccgtgcg atacaatctc accacacaat
    15781 ccggatacca acccgagtgg cgaatttgtt tgccaaatac ttcacttaag cggctgattt
    15841 tgtaaacggt atttttttca tcatttttga ccgcttgtaa aatagattgc ttcagttcgg
    15901 ctgtcactcg ctcatctgca tcaagccaaa gtacataatc actggtcaca tattgttgag
    15961 ctaactgacg ctgtttacca aagccttgcc aatcggtgtt agtgtagaac cttgcgttgt
    16021 attcagcagc aatttgtggt gtttcatcag tactgccact atctaaaatc acaatttcat
    16081 ctacccaatc ttttactgtg tcaaggcaag cccgtaaatc ttgagcttca tttttgacaa
    16141 tcatcgcaac acttaatgtc ggcatagttt atccttctct ctttttgtcg tgtgtttttc
    16201 tgctattcgt tgcattttac tttaaaaata gtggtttttg tgctattttc tacgccaaat
    16261 tttatcaaca aaacaaatta acggaaaaag aatgtcaatt acattaacaa ccaaacaaaa
    16321 acaattccta aaaggcttgg ctcatcattt aagcccagtg gtgatgctgg ggggtaacgg
    16381 cttaacagaa ggcgtgttag ctgaaatcga taacgcctta gaccaccacg aactgattaa
    16441 agttaaagtt gccggggctg atcgtgaaac caaacaatta attattgatg ccattctgcg
    16501 tgaaactaaa gcggctgaag tacaaaccat tgggcacatt ttagtgcttt accgccaaag
    16561 cgaagagaaa aaaatcagct tgccaaaagc aactaaagcg atctaattgc aaaaatatgt
    16621 ttaaattcaa ccgcttgtat tcaagcggtt ttttatagga ctttctatgt ttaaaaaatt
    16681 ctctctttat acccttgcaa tgttgctcat tcctgtggtg acttggctgg caaattggca
    16741 ctggtctctg gcaattcaat acgctgaatt tgatttcgac tactttttat atttaatcac
    16801 cgaaaccggc tccgtacctt atgccatcat cacctgtgtg gttttcgcct tattactggc
    16861 gagggtggtt cgcaaacgct actctttaat ttttgtgatt accgtgtgtg tcgcttcaat
    16921 ggtagccact caagcaatca aaacagcgat gaaatcaacc tttcaagagc ctcgtccatt
    16981 tgtcactgct cttttccaag ataaaacaga cgatttttat caattaacac gcgagcaacg
    17041 tgggcttgcc gtaatggaaa aaatcggtgc aaatcaaaat tttgttaccg ctcaccaagc
    17101 caaagaagtg ggctattctt tcccatcagg ccacactatt tttgcggttt cttggctatt
    17161 attggtggta ggtttctgcc gtaatatgcg aggacaagcg gtcgttttgg ctcatttttt
    17221 tgcaatcagt tgggcggcgt taatgctgat tagccgcttg cgtttaggta tgcactaccc
    17281 gattgattta ttcaccagta gtttaattgc gtttctaatc aatttagcct tatttgtgtg
    17341 gtttgtgcct tggttggaaa gtaaaaaatg gtttgctaaa aag
//
LOCUS       DANMGB010000041        17272 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.041, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000041 DANMGB010000000
VERSION     DANMGB010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17272
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.041"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(33..635)
                     /locus_tag="PXG19_001003"
     CDS             complement(33..635)
                     /locus_tag="PXG19_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6066314.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(637..1656)
                     /gene="purR"
                     /locus_tag="PXG19_001004"
     CDS             complement(637..1656)
                     /gene="purR"
                     /locus_tag="PXG19_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL6066315.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(1792..2520)
                     /gene="cmoA"
                     /locus_tag="PXG19_001005"
     CDS             complement(1792..2520)
                     /gene="cmoA"
                     /locus_tag="PXG19_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL6066316.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(2530..3312)
                     /locus_tag="PXG19_001006"
     CDS             complement(2530..3312)
                     /locus_tag="PXG19_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6066317.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            3431..3997
                     /gene="seqA"
                     /locus_tag="PXG19_001007"
     CDS             3431..3997
                     /gene="seqA"
                     /locus_tag="PXG19_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL6066318.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            4007..5425
                     /gene="menE"
                     /locus_tag="PXG19_001008"
     CDS             4007..5425
                     /gene="menE"
                     /locus_tag="PXG19_001008"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL6066319.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            5418..8795
                     /gene="mscK"
                     /locus_tag="PXG19_001009"
     CDS             5418..8795
                     /gene="mscK"
                     /locus_tag="PXG19_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL6066320.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQLNLLINIELNQQQVQTISDALQQKLQQQSFWVKSNNPID
                     LEWFSKFVDITHYQFIDIGKKLNFSNWRDNLLPASILVGILLLLAIFINRQKDKIKQK
                     LHQINNRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFVAITYISFENPQEVWTW
                     GLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWIIALLLNTSIF
                     TNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKESKSILLTIV
                     KLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYRAFSISSRRL
                     AYRRLQEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIAVSEVKNQMLKLTDFVL
                     WIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLLTAILIIVVM
                     VVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTLGMSWSKLQW
                     LLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSKIRIRATTLV
                     DFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRLLLQVAEENP
                     KVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLFNEHNIDIAF
                     NQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            8798..9880
                     /gene="aroC"
                     /locus_tag="PXG19_001010"
     CDS             8798..9880
                     /gene="aroC"
                     /locus_tag="PXG19_001010"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL6066321.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            9899..10726
                     /gene="mepA"
                     /locus_tag="PXG19_001011"
     CDS             9899..10726
                     /gene="mepA"
                     /locus_tag="PXG19_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL6066322.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            10799..12718
                     /locus_tag="PXG19_001012"
     CDS             10799..12718
                     /locus_tag="PXG19_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6066323.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            12824..13150
                     /gene="secG"
                     /locus_tag="PXG19_001013"
     CDS             12824..13150
                     /gene="secG"
                     /locus_tag="PXG19_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL6066324.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            13175..13260
                     /locus_tag="PXG19_001014"
     tRNA            13175..13260
                     /locus_tag="PXG19_001014"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13209..13211,aa:Leu,seq:gag)
     gene            13463..14704
                     /locus_tag="PXG19_001015"
     CDS             13463..14704
                     /locus_tag="PXG19_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6066325.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(14863..16731)
                     /locus_tag="PXG19_001016"
     CDS             complement(14863..16731)
                     /locus_tag="PXG19_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL6066326.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(16742..17137)
                     /locus_tag="PXG19_001017"
     CDS             complement(16742..17137)
                     /locus_tag="PXG19_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066327.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         5340 a         3596 c         3359 g         4977 t
ORIGIN      
        1 atctttttaa gatgaaatgc tcgtcttttg tttcactttt tatactgctt tttattttta
       61 taccatttcc agcctaaaaa tagaataaca atgcctaaaa tggcaaaaat gaggtgctgc
      121 ccattagcta cttgttcttt tagccaatcc aaattagatg ccccatagtc gcctaaataa
      181 acccaaattg gcacagagat aatagcggca cagaaatcaa ctaataaaaa ttttacgaag
      241 ctgacttttc tggtaatacc tgaaactaag taaaccaccg cgcgcaagcc aggtaaaaaa
      301 cgagccataa aaagtagttt ccatccttgt ttttcaaaac gttcttgcac ggttgcaaaa
      361 cgttcaggtg tcgcaacatt cctgattaat ggaaatttga gaattttttc gccatagatt
      421 ctacctagcc agtacattgt gctatcgcca actaatactc ctaacatact aacaaccagc
      481 atccaatgca cattggtgta gcctaatcct gaaataacac caccggatac taacgtaata
      541 tcttcaggaa tcggcacacc gaaaccacag gcaagtagca caagaaaaac agcccaataa
      601 ccatagctac taaaaaattc aatcaatgtt tccatattac tccttaatgt ttaaattccg
      661 aaccgattta cgtttgacca attcaggaaa gaactctaat actttaggct cttttgcgtt
      721 ttcgttatct tcaatacgtt ctaataataa ttctaatgct gccgagccta agcgagattt
      781 tgactgatgg attgtcgtaa gaggcggtgc ataaaagcgt gagctatgca cgttatcata
      841 cccgatcact gaaatatctt gcggcacatt cagccctttt tcggtaatag ctgaaattgc
      901 ccctagtgcc attgagtcat taaaacaaaa aaccgcggtt ggtaattttt cactgctctt
      961 aagcaaatta ttcatacact catacccccc ctcaggttca aaatcgcctt cttgaatcca
     1021 ttcttcacga atagacaaac ccgcctcaga tagcgctttt ttaaaacctt caaaacgggt
     1081 tcttgcaatt tctttatctc tattgccggt aattacagca atatcttgat gcccgttttc
     1141 aattaaatgc tgagtcgcaa tatagccacc ttcaacaccg tgatctaaaa taatatcact
     1201 gcgttcatca cttcgtcccc aatccataat caccattggg atattgctgt tttcaaagat
     1261 atcaaatgaa ttagctgtat attcggagca catcaccaaa atgccatcaa cccgtttttt
     1321 gatgagcata tctaaatgat tttgaatttt ctcaagtttg ttttgagtat tgcacaaaaa
     1381 tagtgaatac cctttgctat agcaaaattc ctctaccgct aacacaattt cagcgaaaaa
     1441 cggtgattcg ctggttgtaa tgatcatacc gatagattta gtcgtattaa ttttcaaact
     1501 ccgcgctaca gcactaggag aatagttcag cgctttaata gcctcccaaa ctgcttttgt
     1561 agtgtcctct gctacaaagc gggttttgtt tataacgtga gaaaccgttg tagtcgatac
     1621 accagcatat tttgcgacat cttttatcgt tgccatacct ttttcctcct aaataagtag
     1681 tggtgcatta taactgattc taactgactt ttattataaa gaaatagata gaatgcaagc
     1741 ggttgctttt tatcaagaat ttgcaaaaaa ttttacaaat atcaccgctt gttaggcttt
     1801 aattgcaatc attgagccaa aattaaagca ttgaaaccaa agttcaactt gtgtaaaacc
     1861 agcttcttgc agacgttttt tatgggtttc aatactatct gttcgcatca cattttccaa
     1921 agcattacgc ttttggctga cttccaattc actgtagcca tttgctcgtt tgaatgtgtg
     1981 atgaaggtcg atcaatagct cgttcatttc ctcactctca aaggtaaatt tttccgataa
     2041 cactaaaatg ccattggaat ttaatccttg ataaatcttc tgtaataatg ctaggcgatc
     2101 ttctcttggt aaaaattgca aggtgaaatt aagtaccacc attgaagcat ttttaatttc
     2161 aatgtggcga atatcatcaa gtaaaatcgt caccgggatc tcagagtgat aagcacttaa
     2221 atgggtttta caacgctcaa ccatcggctg agaattatct accccgataa tctgcacatt
     2281 cttcgcattc acattacggc gaatagataa aatccctgcg cctcgtgaac aacctaaatc
     2341 ataaacattt gaattatctg tgacaaaacg ctccgccaac attccaatag cagtaataat
     2401 attggaatag cccggcacgg agcgttggat catatccgga aacacttcag caaccgattc
     2461 atcaaaagta aaatcgccca atttctcaat cggagcggaa aataatgtat ctctttgcat
     2521 ttttctccct tatttttcta aaaatttatt gattgctctc acaacagttc ctgttttttc
     2581 tgcgtgaacc caatgatcag cgtttgccac aatgaaagat ttggcctgcg gaaattgtgc
     2641 caaaatcgtt tgtgtatgct ctgcttgaat ataatccgat aatgcacctt taataaacaa
     2701 ggtcggttta tccacaaata cctgctgcca ccccatcaca ttctgataat tatcttttag
     2761 cgcctgtaaa ttaaaacgga aagattgctc gctttgggca tcaaaagatt tcaacataaa
     2821 ctgttgcacg ccttcatctc gaatatattc agccattatc gctttagctt gctgacgatt
     2881 ctggggttta gcttctttca ccgcaaataa ggctgccata acctgctgat gccgattttg
     2941 ggtataagtg accggggcaa tatcaatcac taccaatttc tccaccagtt caggagcaaa
     3001 tgcagccaat gccatcgcac tttttccgcc cattgaatgc ccaaccacaa tagcattttg
     3061 gatatttaat tctgtgagta attgtgctaa atcttgtgca atcaaagcat aattcatttc
     3121 gtctgaatga aaagatcgcc cgtgatttct gagatcaacc attaaaatgg agtaacgttc
     3181 tgcgaatggt tttgctattg cgcctaggtt atttaaatct ccaaacaatc catgtaagaa
     3241 gatcatcgtc tgagcattag catgattatt cgaaggttgg taattaaagt ttaactgcga
     3301 tttttctgtc atataaatgt cattgttcat ataaattttc agcgatgttc ctctataaaa
     3361 aacaatagaa atgcgtataa tagcaagcac tattaacgca tttaataccc gcagatattt
     3421 gaggatcccg atgaaacgaa tcgaaattga tgatgaatta tatcagtata ttgcaagccg
     3481 tacacaatct attggtgaaa ctgcgtcaga tatattacgc cgtctattac gcctgccaca
     3541 atcgcctcag ccttttgttt tagtacaaga acacatgatc aacgagctta aagagcttgt
     3601 caaaacgcct tctcgtgcta cgaaaaaaaa tgaatccaat gcagaaaaaa ccgttgaaaa
     3661 attggaaaac attttaaatt ccgagcattt tatgaacgaa aataaaaatg tagtgcgttt
     3721 tactatgcta ttagccgcat tatatcgagc aaatccggag gcttttgcta aagcaaccga
     3781 aaaagtgcgt ggtaatgaac gtatctactt ttcgcaaagt gaagccgaaa ttttagctac
     3841 tgggagtgga gtaaaagcca agcagatccc agattcaccg ttttgggtaa ttaccaataa
     3901 taataccgca cgcaagggac ttattctcaa aggcgtaatg gaatccatga aagtaccaag
     3961 ccagttaatc gaacgcattc aagcgctttt tatctaatta attgaaatgc tcatcaattc
     4021 tactcgcttt cctacccaat tttgggctgc tcattcagcc caaaatgtgg cgattatttg
     4081 ggaaaaagga acatcagact atcttaacca ccttccatca aacatcactt ggtatagttt
     4141 gaatcagttg attgcgcaag ctattttcgt gttgcaacaa caaggtgcta ctccgcacag
     4201 tttgattgcc tattgtggtt ctcatcggct cattggcttg ctcacttatt gtgctagcct
     4261 tgctttgggg gctaagattc taatgcttaa ccctgctcaa acagcaagtc aacgacaagc
     4321 agtcttagat gacaatggtg ttgagctcat tattaatgat gccgactttg caaaattttc
     4381 agcaaaaacg accgcttgta atgccttccc tacgattgat tttgaaaaac cagctaccct
     4441 aaccctaacc tcaggctcaa gcggtaaacc taaagcagtg gtgcattcta tagcggccca
     4501 tctctatagt gccgaaggag tatgtgaatt aatggcattt gagcagccaa actcttggct
     4561 actgagcttg cctctgtttc acgtttccgg acaaggcatt atttggcgtt ggttatttaa
     4621 aggtgcaaca ctgtatgttc acgaagacaa aagtgatttt tttctttcag cacaaaaagt
     4681 gagccatctc tctttagtcc ccacccaatt acaacgctat ttaaaccaat tagattctat
     4741 ggtcagccaa aaatgtttac tgggtggatc tatgcttcca gccgaattga ttgctcaagc
     4801 acaacaatct gggatgacta ccttttcagg ctacggaatg actgagatgg catcaaccat
     4861 ttgtgcagta gaaaatgatt taaacagtgt tggttttccg ttaaaacatc gggaactaaa
     4921 attagaaaat ggtgaaattt gggtaaaagg caaatcactc ggcttaggct attggcaaaa
     4981 aaatgggcaa attcgaccgc ttgtaaacac acaaggctgg tttgccacta aagatcgtgg
     5041 cgaatggaat cacaaaaaac agcttgtaat aaaaggacga ttggataata tgtttatttc
     5101 aggaggggaa aatatccaac ctgaggaaat tgaacaactg atttttcgtt ctcagcttgt
     5161 cgaacagatt atcgtgttgc cgattgaaga taagcaattt ggacatcgac cagtggcgtt
     5221 cttacaattc aagcaatctg attcaaaaaa tgaactccat aaattaaaaa tttggctgtc
     5281 tgataaatta gaaagattca aacagcctgt tgcctattat ttactggata tagaaaaata
     5341 ccaaaaacaa ggcttaatta aactatcaag aacacaatta caacaagatt taaaactcaa
     5401 agtattaaag gaaatctatg tttagaccga ttttaaaaac atttgtgctt agtttaggct
     5461 taatgctaaa tagttatgca ttagctgaat tgccaaccca acaggtagtg caaacgcagt
     5521 tagatagcgc caaaaaatta gatcaagccg atgcggataa taaggcattg gttcaaacac
     5581 ttgaagatac gcttgctttc ttagcccaaa ttgataaaca aaaagcagat aatcaggcat
     5641 tgaataaatc tattcaagat tcccaaaaag cattaaaaac aagccaacat aatcttgaaa
     5701 aattaaaaga ggtgactatt gcaagtgtcg ataatttaac acaaaaagcg acaacagatt
     5761 tacaaaaaga gttaacctct acacaatctc agctggaaac agtacaacac gatttaagta
     5821 ttattaataa taatttagtt gcacaaaata ccgcaccgga taaggctcaa acggccttaa
     5881 ccgagatggt taaacgtaaa caggaaatta gtagccaact ttcagcgact aacattaaaa
     5941 atgaactaca gacaaagtta gaagtagaat tagaattaat agaattaaaa aacacttaca
     6001 atcaaatatt acttggtggc agcgaggatt tatctgcgct ttactctgct caattagatg
     6061 aaaaaaagca agagcagcaa aatctacaag cagaaattgc aaacctgcag actgctatca
     6121 acaataaaat tgtagaagag tctcagaaca agctagatca agcacaagcg gttcaaaatc
     6181 agcaaaataa tgcaacgacg aacccagtta tcttgcgtga attggatata aataccaaag
     6241 tcacacaaga gttgctaaaa cagaccaaag atatgacgca gttatcacaa gataatttgc
     6301 gaatcaaaag tgtgctagat aacttacagc aaacccaacg taatattgaa gaacaaatca
     6361 gttctctgca aggtacgttg gtgctttctc gtattattaa taagcaaaaa caatcattac
     6421 cacaagatga aatgatttcc ggactatcaa aacaaattgc agatttacgt gtacgtgttt
     6481 ttgatatcac tgaatttaaa gactcttttg cggacataaa tgcttatatc agccgcatag
     6541 agcaagatga aaaaacaacc tttacgagta aagagaaaga acaactgagt aaaattttac
     6601 aggaacgttc tgacacttta actgagatga ttaaatcatt aaataatcag ctcaatttat
     6661 taatcaatat tgaactaaac cagcaacaag tgcagaccat tagtgatgcg ttacagcaaa
     6721 aactgcaaca gcaaagcttc tgggttaaaa gtaacaaccc cattgatctt gaatggttta
     6781 gtaaatttgt cgatattacc cactatcaat ttattgatat tggaaaaaaa ctcaattttt
     6841 caaattggcg ggataattta ttacctgcaa gtattttagt cggaatttta ttgctattag
     6901 ccatctttat taatcgccaa aaagataaaa ttaaacaaaa attacaccaa attaataatc
     6961 gactaaaaat tgtcgccaca gatagccaat ggaacacccc tcttgctatt ttttggacat
     7021 tagtgctttg cctgccaagt acactaatgt tcttagccgg atttgttgct atcacttata
     7081 tttcatttga aaatcctcag gaagtctgga cttggggatt aaaaatggca atttattggc
     7141 tgtattttgc ctttttagtg gcgatgctac gcccgcacgg cataggacat attcacttta
     7201 atatgccaca aaaaagtaat gaaatcttcc gtaatatttt aaaacgttcg gtatggatca
     7261 ttgctttatt actgaacacc tctattttta caaacttaga gatgggaata tcttacgaca
     7321 tgcttggaca aacaatgact atttttgtcc ttatattaat gatttggatg attgtaccgg
     7381 catttaggca agctatttct acctatgaga atgtcacaac agaagagaaa aaagaatcta
     7441 aaagtatttt actcactatt gtcaaattag tgctactgct tgcccctatc attcttatca
     7501 ttctgattgc attgggctat tactatactg cactggtgat cattgagcat ttagtagatt
     7561 cttattttgc gatcattact tggattatta ttcgtaatat tctctatcga gcattctcta
     7621 tttcatcacg ccgtctggct tacagacgtt tacaagaaaa aagagaagca gctgaagcca
     7681 aaacacgagc taaagcagaa caaaatgatg aaaacccgga cggtgtcgag cttccttttg
     7741 agctaaaaga agactctatt gccgtaagcg aagtcaagaa ccaaatgttg aaattaactg
     7801 attttgtgct ttggattggc ttatttgtgc tgctttactg ggtttggtcg gacttaatta
     7861 ctgttgcact ctacctagac ggcgttacct tatggcaaca aagtgttaca acagaagccg
     7921 ggattgtaat ggaatccatt accctgctga atttactcac tgctattctg attattgtgg
     7981 taatggtggt actcattcgg aacttatccg gtttacttga agccctgatt ttctcgcact
     8041 tcaagttatc gcaaggtaca ccatacacaa ttaccacact cttaacctat ttgattattg
     8101 cgttaggggc aatctttgcg ttcggtacat tagggatgtc ttggagcaag ctccaatggc
     8161 tactaactgc actttctgtc ggtctgggtt ttggtatgca agagatcttt gcaaacttcg
     8221 tttcagggat tatcatcttg tttgaacgtc caatgcggat tggcgacacc attaccatcg
     8281 gcacttacag cggtacggtt tccaaaattc gtattcgtgc cacaacctta gtcgattttg
     8341 acggcaaaga agtgattgta ccaaacaaag cattcgtaac cgaacgcttg gtgaactggg
     8401 cattaagcag caccgcaacc cgcattattg ttcaagtcgg cgtggcttac gggtctgatt
     8461 tagaattagt caaacggctg ttattacaag tggcggaaga aaatccgaaa gtcttgaaag
     8521 atccacaacc aagggcttat ttccttacct ttggtgcaag cactttagat cacgaattaa
     8581 gagcctatgt gaacgattta tctgatcgta acccaactat tgatgcacta aatacacgca
     8641 tccaccagct ctttaatgaa cataatattg atattgcatt taaccaatta gatgtttata
     8701 tcaaaaacaa cgatacacaa gatgaaatta aagtagattc aaaacgcttt gagtttgaac
     8761 gaccaaataa cataacagca aaagaaaagg aataacaatg gcaggcaaca gcatcggaca
     8821 attatttaaa gtgaccactt tcggcgaatc tcacggtatt gcattaggct gtatcgtaga
     8881 tggcgtaccg ccgaatatgg ctttaagcga agcagattta cagccggatt tagaccgccg
     8941 taaacccggt acttcacgct acaccacgcc tcgccgtgaa gatgatgaag tgcaaatttt
     9001 atcgggagtc tttgaaggca aaacgacggg aacaagcatt ggtttaatca ttaaaaacgg
     9061 tgaccaacgc tcacaagact atggcgacat tgccgaaaaa ttccgcccgg ggcacgcaga
     9121 ttatacctat cagcaaaaat acggcattcg agattaccgt ggcggtgggc gttcttctgc
     9181 tcgggaaacc gcaatgcggg ttgccgccgg ggcgattgcc aaaaaatatt tgcgtgagca
     9241 atttggcatt gaagtgcgag gctacctctc acaaatcggc aatatcaaaa ttgacccgaa
     9301 aaccgttgaa aatattgaac aaattgattg gcacgcagtc aatagtaatc ctttcttctg
     9361 ccccgatccc gttgcgattg aaggctttga tgccttaatt cgtgagctga aaaaagaggg
     9421 cgattcggtg ggggcaaaat taaccgtgat tgcagagcgt gtacctgtag ggttaggcga
     9481 acctgtgttt gaccgcctag atgccgacct tgcccacgcc ttaatgtcga tcaacgccgt
     9541 gaaagcggtg gaaattggcg atggttttgc agttgtggaa caacgtggta gccagcaccg
     9601 agatgagatg acgccgcaag gctttctctc taatcacgcc ggcggaattt taggtggtat
     9661 tagctccggt cagccgatta tcgctcatat tgcgttaaag ccgacctcaa gcattactat
     9721 tcccggcaga agcgtgaaca aaaacaacga agccgttgaa gtgatcacta aaggcagaca
     9781 cgacccctgt gtaggtattc gtgctgtgcc gattgcagaa gcgatgatgg cgattgtact
     9841 actcgaccat ctgttaagat ttaaggctca atgccgttaa acacataaaa ttggaaaaat
     9901 gaaattatta aaaacacttt tagtctcaag ccttgctttt acagctaccg cactgaatgc
     9961 aacgcaatgg gagaaaatca aaactccggt tcaaggaaaa gcacaatcta tcggcggtta
    10021 tagtaacggc tgtattattg gggcacagcc ccttgcatta aaaggcgaag gctaccaagt
    10081 gatccgctcg gctcgtaacc gctattacgg acacccacaa ctgctcgatt atctcactca
    10141 cttaggcaaa aaaaccaaag ctgccggtgt gccgaccatt ttaatcggcg atatgggaat
    10201 gcctgccggt gggcgttttg cctccggtca cgcctcccat caaaccgggc tggatgctga
    10261 tatttggttt aagttcggac cgatggacga tgaaaccgcc cgcaatccag cagggcttgc
    10321 caccattatg gtaaaccgta gtaccgagcg ggttgatgat tcactctgga atcaacacca
    10381 tactaattta gtaaaacttg ctgcaaccga tcctcgagtg gatcgcattt ttgtcaatcc
    10441 tgccattaaa gtgaaactct gccaaaccgc aggcaatgat cgtgcttggt tacgcaaaat
    10501 tcgcccgtgg tacggacacg actcccattt ccacgtccgt ttaacctgcc cggctgatgc
    10561 cgcaagttgt gaaaatcaag cccttgtgcc tgccggtgac ggctgtggtg aagagcttta
    10621 ctcgtggttt gagccgaaag aagcctccgg cacaccaaaa gccaaagtgc tacccacagc
    10681 gcctgttcaa tgtcagatga ttttatctga acaaggcttg aattaattgc aaaataacaa
    10741 ccttttttga ccgcttgtca gcccacaagc ggttcatttt cttaaataat ttacgattat
    10801 gcgtttattt gttgccgaaa aacccagcct tgcccgagcg attgccgatg tgttaccaaa
    10861 accccatacc aaaggagatg gctttatcca atgcggcgaa cacgacactg ttacttggtg
    10921 tatcggtcat ttattggaac aggctgaacc cgatgtctat gatgagcgtt tcaaaatgtg
    10981 gcgaatggaa catttgccga ttgtgcctga acaatggaaa ttgattccca aaaaagagac
    11041 gctcaagcag tttaaagtgg tggaaaagct gattaaaaaa gccgatgttt tagtcaatgc
    11101 cggagacccg gatcgagaag ggcagctgtt ggtggacgaa gtttttggct atttgaattt
    11161 atctgctgaa cgcaaaagcc aaattcagcg ttgtttggta agcgatctca acccgaatgc
    11221 ggtgagccga gccattgaaa aattgcaaaa aaacagcgat tttataccgc ttgcaacctc
    11281 tgctctcgcc cgagccagag cggattggct gtatggtatc aatatgaccc gagcctatac
    11341 cctacagggg cgttgggcag gctataaagg cgtgttatca gtcggacgtg tgcaaacgcc
    11401 ggtattaggg ctgattgttc gccgagatct ggagatcgag catttcgtgc caaaggatta
    11461 ttttgaggtg ttggcacaga ttgtcgtgcc ggaaacccaa gagcgattta aggcgcagtg
    11521 gcaaccgagc aaagcctgtg aagattatca agatgaagat gggcgggtgc tgtctcgtcc
    11581 attggcagaa aatgtggtaa aacggattac cgaccagccg gcaaccgtca ccgaatatca
    11641 aaataaaatt gaaaaagaaa ctgcaccgct gccttattct ctttcggtat tacaaatgga
    11701 agccgccggc agatatgggc tatccgccca agcggtgttg gatatttgcc aaaagctgta
    11761 tgaaacccat aaactaatta cctaccctcg ttctgataat cggtatttgc cgaccgaaca
    11821 tttcaacgac agatttaaag tgatggcggc gattgctcat catttacctg aatatcaaca
    11881 aaaaccggaa gtgattgatg ccactattcg caatcgttgc tggaatgata aagaggtgga
    11941 agcccaccac gccattattc ccactgcacg gcaagggacg gtacatttaa ccgaaaatga
    12001 aaaaagagtt tatcaactca ttgcccgcca atatctaatg caattctgcc ctgatgcgga
    12061 atatcgcaaa agtaaaatcg ggcttgaaat tgcaggtggt agttttgtcg ctcaagcacg
    12121 caaccttgta attgccggct ggcgagcgtt actgggtaaa gaagatagcc ttgacgatgc
    12181 agagccacta ctaccgattg tcaaaaaagg gcaaatcctc cattgtgaaa aaggggaaat
    12241 tgtcagcaaa aaaacacaac cgccccgcca ctttactgat cgcagtttgc tttcagcaat
    12301 gaccgggatc gcccgttttg tacaagataa agaattgaaa aaaatcttgc gtgaaaccga
    12361 tggtttaggc acggaggcaa cccgagccgg tattatcgaa ttgctgttta aacgtggttt
    12421 tttaatccgt aaagggaaaa atatccacag taccgaagcc ggcagaatat tgattcaagc
    12481 acttcccgac tctgctaccc agccggatat gaccgctcat tgggaaatgc agctgaatca
    12541 aatcagcaaa aaagagacca gctatcagca atttatgttt gatctaaacc aacagctccc
    12601 acatttatta caaagcccaa accgccaagt gttgcaaaat ttagcgaaaa tcacaccgct
    12661 tgcaagcggc aataaacctc gttattttaa aaagcgaaca caaactgctg aaaattaaat
    12721 caagcaggta aaaattactg tttagcactt gtcaaacggg cgtaaattct atattatgca
    12781 cgccattgca aatttcgcat aaagaataca agagaataaa ttaatgttaa ttaatgtact
    12841 cactattgtt tatcttgtag ttgccgtatt actgatcgca tttgtattaa tgcaacaagg
    12901 taaaggcgct gatgcaggtg cttctttcgg ggcgggtgct tcagcaacag ttttcggctc
    12961 agcaggatca gcaaattttt tatcaagaac aactgctcta cttgcaacga ttttcttcgc
    13021 aattagttta gttatcggta atttaagctc acacaatgta gcaccgaaaa gccaatttga
    13081 agacttaagc caagttgaac aaaagcaagt agaacctgta aaaatagaaa atagcgatat
    13141 ccctcaataa tcgcttaaca ttaaaaagaa taaagctctg gtggtggaat tggtagacac
    13201 gccatcttga gggggtggtg gacacagtcc gtgcgagttc aagtctcgcc cagagcacca
    13261 ttcaactaaa tttggctcaa cggagctaaa ctaaaaaagc cttagaaagc ctgtaaaatc
    13321 aacatttaca ggctttttta ctatcttaac tcaacggctc taaacgtttc ctatcacaaa
    13381 ttttagttac acgtttagtt acacgtttta aatcgtgtta ctatactttc aataatcgtg
    13441 taacacttcg taggtttaat ttatggctag aacaactaaa gcattaaata aaactcaaat
    13501 agaaaatgcc aaatcaaagg ataaagaata tattttatcc gatggcgatg gattaaatct
    13561 tagagttaaa cctctcccta aaggctctaa aatttggatt tttaactaca ctaacccaca
    13621 aactaaaaac agaacaaatt taactattgg gcgttacccc ttaattacac ttgcggaagc
    13681 tcgcactata tgtgatggct accgctcgtt aatagagaaa ggcatagatc cacaggaaga
    13741 aaaaaagcgg ctgcaacaag aagcagaaaa tcgagtaaat gatactttcc ggaatgtggc
    13801 cgaaagctat ttcaatggta tttataaaga gaaagcaaaa aatccgatta ctcgtgaaaa
    13861 gaattggata aggttagaaa atcatatttt cccctatatc ggggataaac acgttgaaga
    13921 aatcaaagta aaagcccttg ttgatattta ttctaaagtg gcagataaaa gcaacacatt
    13981 aaaaaaactg catcagcttg tatctgctgt aatggatcac gccattacgc aaggcattat
    14041 agaaagccat aactgccgat tagcagttaa aaacttttat atcaagccat ctacgccaaa
    14101 tcccactatt gagcttgaag aattaccgca gttatttact gatttacata atgcgaagtt
    14161 atcaaagcaa acttacgccc ttgtttgttg gtcgttcttg actgctctac gcccaaatga
    14221 agccgttaat gctgaatgga aagaaataga ctttgagaaa aagctatgga atatccctaa
    14281 agagaagatg aaaggaaaag cagataaaaa acgccctcac tctgtgccgt tatcctccca
    14341 agcgttaaag atattagaga tgatgaaaat gcactctaat tctagccctt ttgtttttcc
    14401 aggtcgttca tcaaatagta aaccaatgag caacgcaacg gtaaattcaa cattaaaaag
    14461 gaatggatat aaagatagac taaccgcaca cggtattcgg gcatttgtga aaacatttct
    14521 atcttctcgc aaagtagatc gccacgtttc cgaaagtata ttatcccatt tattagaagg
    14581 tggagatgat ttagaaaaca catacaaccg atatgatttt ttagaagagc gtgtgccagt
    14641 aatgcagctt ttaggtgatt attgcgaaca gtgcggaatg aatttagagt tagttcgggg
    14701 ttagggaggt aaaatatatg attttagtcg tcacgtcatc acttttccca ctttcccctt
    14761 taaaatcaaa tagttaagtg gtgatgactg gttttaaagt catcattaag tcatcacaaa
    14821 aaggtgatga cctagaaaaa aagaggggtt tccccctctt tgctaattca aaatatcact
    14881 ttgaaagtca tcaaaatttt tgaaatgaac gtttgttcgt tgccctttat tcgtctttcg
    14941 ttttgtgaaa tcgtgcttat tgccgtgttg ctttactgct tgctcaatac ctactacaaa
    15001 agtatttaag cctagttcta gcacattctt agccttaaca aaggctaaat atgccggata
    15061 aaggtgcgtt cttattttgt cgtgtccaag cgtgttgcca gttccgatat aaagcccgtc
    15121 tgtattttct gttgtatata gatactcgaa aaaatccgtt aatgggtcag actgcttttt
    15181 aatctccaac gcctctaggc tctctttttg ctcctctaag gctcttttag cttcgagtgg
    15241 gtcagggaag gtatcaagca ctttacggat aatgccccct atctctaatg taattttatc
    15301 cataaaatac ggatcacgtt cattttcagg cggtctttta ttaaaacgga aattgacaat
    15361 ccgcctatct ataccgccat tccgttctgt ccatttacaa gggtcgttat tgacgatcat
    15421 aatcattgcc gcaattcttg cgttaaatgg gtgcttgttc ttcggatcga ctcgcaccat
    15481 atcaccgcca gtaatcgctt tcaatccgcc accatctcca gcgtatttcg tttgctcgga
    15541 acagataatc agctttttat cttccagccc tgcgattttg cgttcatcat caaagttttc
    15601 tagccttgct gaagctgtgt tcttttctcc agctaatagt gtcgcaatgc cagcaaatac
    15661 cgatttaccg cttccgcctt tccctgttac ttggaagaat acttgccagt tgtagcggtt
    15721 tgttaaaatc gcatagagag cggctagaat gttcttcgcc ttgtcttgct tgccgtctga
    15781 tacaaagtta agccattgat caaagtgtgg tgtttcggct acgttctcgt catagctatg
    15841 tggaatataa gccgttagcc agttttggcg gttaacggtt ctttgaacat ttaccgaata
    15901 aggtgggtaa ggggttaaag tttcgggttg ccccttgcta ttccaaccaa tcaccgtagc
    15961 cggttgtact tccatttttt gaagcgtgcc gaatggtcgg gttttatcgt tggctgtcgt
    16021 gcgtggataa gctaagaagc ctttagcttg ttttgtgcct gtaccgttgg ttaaatcggt
    16081 ttcttcagtt tcgacaaagg attctgaaat ttcttcagtc agccagccta gaatatctac
    16141 accaccaaag tctaaaatct cttgcgtggt tttcgggtaa gcgtaaatat tatgaacggc
    16201 aatcgttact tcattcattt tcggggtggc ggtttcggtg cgtgcttcgc cttcaccgat
    16261 atgatttacc gctgcaccgc cagccgatac taatttttta tattctttgc cttgggtcag
    16321 tttcaccacg ttagcaattt gtcgcataac agaatcatct gttaggcgtt tcattacttg
    16381 cttgtcaagt tccggaatca ctgaatagcc accgtctgcc cctccatttg tattcgtagc
    16441 aagcgaacgc aattcgcctg ttttaatcca gtggcgaagc tcgtcatcag atactttcac
    16501 atttgcggtt tcaacctgtt gccccggttg gttacgctgt tcatcagtaa tcgcttcata
    16561 acgtgcgatt tcttttacta aattttcagc ttgtgagcgg agttcatcaa acttagcccc
    16621 ttctgcttca gttgttgagc gtttttcttc gtctgctttg gttaaaattg aacgcatttc
    16681 tgcttcaata gccgcttttt gttggcggag ttctaaaagt tttttaaaca ttgccttatc
    16741 cttaattcaa ataattgata ttgtagtgaa gcgttgctgt tttccacgct gattcgttag
    16801 catcataatc atagctatac ttagccagca cacattcgtc catactgtgg aatgtggctt
    16861 gattcatcac atcactgatt ttttgagcca ctaaatctag gtcgttttcg gttgaaaaca
    16921 ttggtaagta aatgccgatt ttcaaatagg cgttgcattc gccatcgcaa agcgtgagtt
    16981 ggctatattc cgcttcatca atgaatacgg cgatagccgg taattcattt tctacatcgg
    17041 tgaatacggc tcggccgtta tggaaatgtt gaatgccttg aatgttacct tgtaataagt
    17101 cgataacttc ttggcggatt gcttcgttag aaatcataaa aaagtcctct taattaagaa
    17161 ggctacaatt agccacagaa caatataggc ataatttcaa cggagtaaat agggtaaaat
    17221 ttaatcgttt agctacgttt gaacacgtta agaggataat ttttaaatga tt
//
LOCUS       DANMGB010000042        16914 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.042, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000042 DANMGB010000000
VERSION     DANMGB010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16914
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.042"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..9526)
                     /locus_tag="PXG19_001018"
     CDS             complement(<1..9526)
                     /locus_tag="PXG19_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL6066328.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYALARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKELNWSQKQFNDYVNARP"
     gene            complement(9578..11374)
                     /locus_tag="PXG19_001019"
                     /pseudo
     CDS             complement(9578..11374)
                     /locus_tag="PXG19_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250636.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            11508..12593
                     /gene="queA"
                     /locus_tag="PXG19_001020"
     CDS             11508..12593
                     /gene="queA"
                     /locus_tag="PXG19_001020"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL6066329.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(12620..13158)
                     /locus_tag="PXG19_001021"
                     /pseudo
     CDS             complement(12620..13158)
                     /locus_tag="PXG19_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13171..15453)
                     /locus_tag="PXG19_001022"
     CDS             complement(13171..15453)
                     /locus_tag="PXG19_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL6066330.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(15595..16809)
                     /gene="sstT"
                     /locus_tag="PXG19_001023"
     CDS             complement(15595..16809)
                     /gene="sstT"
                     /locus_tag="PXG19_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL6066331.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
BASE COUNT         4359 a         3983 c         3386 g         5186 t
ORIGIN      
        1 ccggtctcgc attaacataa tcattaaatt gtttttgact ccaatttaat tcttttgccg
       61 ctaatgataa tcggcgatgt tcccagccat acatatgacc tatatcaata ggctgttcaa
      121 tttcttgacg ggttaattta ttgcgataat taccatttgg caatttttca taattagcat
      181 aaattttctg taacgtttcc gagcgtaaat aagctcggtt atatagccca tctaccggat
      241 tatctgtcga taaatagcgt cccgtttcgg catcaatttg ctgagacaaa cggttaaaat
      301 gtggatctac cccggcttga tggtttggcg tttcaaaacg attgagatct ttttgaacta
      361 ctgtcaccac tttcccgtct ttcgggtctg tgaactgata agctttatag ccatcaatat
      421 tttttacctg tttggcatca ttcggtaaag cgtgccaaca atcattatgc acccataccc
      481 cttcattatc ggcatttgta cctctaataa agtaagtatg atctttctct accgtcatat
      541 tgtaggcttt taatctttcc tgtttgattt ttaccttagt gacagtctgc cactcaccac
      601 tttcagcaag taagcgatag cctttttgca aatgttgagc atcaacccac tgagcttttg
      661 ctatctctcc gttgtaagaa tgcccctccg aagaaatcgg cactctgccc gataatactt
      721 gcgtaaagaa cgggtggatt ttgtttgaca caatggtgtg gtattttcct ttgctgtctg
      781 cgacttctac atacaccgta taatcgtatg gattactgta atgagcttgg actttctgat
      841 aggtggttat accggtgcgt tcatttttcg ccagcacctt atcgcccact ttaatgctgg
      901 aaatctgtcg ataaccttta tcagttttga cttccatatc accgtggaat gagcaagtgc
      961 ctaaactagc gctcgatctg gtcttaggaa tcgcaagttc tttacctgat ttggtgacta
     1021 ttttcgccgt tgtccctaca cctgttttaa caagagcacc agcaccggtt aatgctgtca
     1081 ccacatcagt catcatattg ccaaactctt ttccggcatt aaaagaacct acagcccctg
     1141 cctgttcata gtaaacctgc attttatcga gtttagctaa atactcctgt ttagtcatat
     1201 tagcaatata ggagagcgta tcttctcttg cgatcaattc tttcatcgcc acaatagttt
     1261 ctattgggct tgagaacatg gagatcaatc cttcaacgct ctcagcgaga ttctcaggaa
     1321 caccagcaac ggcgcctgat acaaaactaa catcttgccc aatatcaact aatccccaat
     1381 ataatcgaac ttggttttca cagcgggcat caccatggca ggattttaat tcttgtgagc
     1441 gtttctgctc ctgccagttc gagaggtagt tattctccac tgcccttttc ccaatatccg
     1501 ccccaaccgc tgccgattgt gtactatccc ctatcaaacc tgaagccagt ccgcttgcaa
     1561 gctggcttag caacgccaca ttctgtttct cggcttcggt taagtcttgc gtggatttgc
     1621 ccttgtagag ggttttaact ataaagtccg ctgccgcttc gctccctgcg cctgcagcag
     1681 cccctgccag tacattgttc cctgtcgcag ccgcttccac cgcacccagt aaggcgtggg
     1741 caatcaggtt ggcttgggta tccccttcgg tgtacttttt gatttctgca tttaagtatg
     1801 gtgaggctaa acccactgcc gcttgtccca cgtctttcgc cgctaaacct tgcaaggctg
     1861 ccgtcaccgc ttccaccgct cgtttggttt tactgcccgt gccgtagttt ttatcaaact
     1921 ctttttgcaa gcggtctaaa ttggcttcta atttaccaat ctcttccttg ctcgcttttt
     1981 gagcttgtgc tttgcccaat tccagcttcg cttccgtcac tttttcacgc tcactatgcg
     2041 tgtaaatctg ataagccttt tctgcaatct cgcctatgcc tttcaccagc tcttgtgttt
     2101 ctttcacctc actgatatcg tatttcgtca ctttttgatt ggcgttttgc gtatctcggt
     2161 tgagatgatt aagcgtagtt tccgcattta ggtcttcggt gagggtgata gcgatatttt
     2221 ctccaatcgc tgcctttgtt gtgcttcgct cgctttcgtt tttattgccc agtaagctca
     2281 gtgccgacat cgggttcacc ccacttgtcc ctccgctaat cgcgacactt cgggttttca
     2341 attcactgtg gttttcaata tcgccggtgg tcagcgtgcc ggcttggaag cggttgtttt
     2401 ctttctccgc ttggctagtc attaccgctc cctcaaaatg ggcgttcttt ttcactttaa
     2461 cgtccattcc actcttgcct atgtcgattg cagtttggtt ttccacctga gcagtgttca
     2521 acttcgctcc attatatgcc acatgaccat ttactcctgt tgtccctacc gccaatgtgc
     2581 catgtacgct gccttctgtg tattcgcttt tatatttgct tatatcttgt cgacttcttg
     2641 cctcaaaatc ttgtacctca ccttcccaat gatttgcttt gacattggtt gcatccagca
     2701 tgagtttacc atttgcagaa tttgtaacaa ttttacccgc ttgcagttgg ttgttctgcc
     2761 acgtttcagt ttcgatattc tccttgcctt tacctccact cactcctgcc tcaaaaccaa
     2821 taccaaaact atctctatct aaaccgataa atacgcccac actcgcactg tgattcttat
     2881 tcttagtgtt gttttgataa gtatccgcaa cacctttgga ttcaataccc agcttaccgt
     2941 caagcagcag ggtgtctttc actcgggtat ccaccccttc cagcgcaact ttgcccgctc
     3001 ccgaaatcaa ggcaatattg ccgccgttca gggtgctttt gctgtgggtc acgctttgac
     3061 tacggctttc tctttgctgt ttttgcgtgc cgagactgac tgaaatcttc accgccggat
     3121 tttctgccgc agcatggttt tctgtgagtg cattgccaag attgcccagc gtttctgcca
     3181 ctttctgagc attttgtgct gcaatcacgg catcctccgc cgcttttacc gcatataccc
     3241 ctttgagttt ctcgttttgt gttgccttcg ctttttgcac cgattgccgt gccgattgca
     3301 ccgcatccgt taccggtgta ctcaacgcaa tgcttaagcc cgactggcta aattcataat
     3361 tatcggtgct gttaataaca tctttccctg attcaacccg taccccgttt ttgcctgaaa
     3421 tcacggcggt tttttcgttg gaaatcagca catcgacatt gctcacgctc gctttattgc
     3481 cggcttgaat ccgaatattg cccccttcac tgcccaatgt attgcgtgcc gtgctttgga
     3541 ttgccccctc taagctgttc tcttggcgtg ttttttggct accgatagta aagccgattt
     3601 caccaccgtt caagaaaccg ctgcgttttg tctcacgaat atgctgttct gaaagttggt
     3661 ttgttgccga actgagcgtt acattattac cgccgataat atcaatatcg ccactgcgtg
     3721 agacggcaag aagactttca ccttgaatat cgtgaccggc tttcactaaa atgtcttcac
     3781 cggttagttc agtgcctttg tgttcggttt cagaaatatt gtcataagtc gtttttgttt
     3841 tcttcgctag cgcaccacca ctttttgttt tgtgatactc ttcataatcg cgagaacgtg
     3901 ttgcgctacc caacaccata tcattttcag ccagtaacgc taaacgcgct ttggcatcca
     3961 aatccgctcc ttcactgtaa aggtttttcc ctgaaaccac cacatcgcct ttgccttgca
     4021 cccgtgaaat gaccacatca ttcaaggctt cattacgata gtgattgcca ccgcccattt
     4081 tttcatcaaa accaacctgt aaagcggtca aattcaactg attttttgca gataagtagg
     4141 tctgcccctg tccgtcattg atgatgtctg cgcctgctga ggtgatgttg cctgcctgta
     4201 cttgcagcag tccattttca tctttaacgt gcagtagggc tttgcggtca aggttggttt
     4261 cagcgcgttt gaaaccgtct aggtcaatct gtgtggttcg agtggtggag gtatggttaa
     4321 aattgcccgc aatatccagc aaaatcgctt tatccgcttc aatcttgccg ccgatattct
     4381 ctagatcacc gctcactttg gcagcaagca cgccaccact gagtgtgcca ctattctcta
     4441 accgttcggc attaaactgt gctaaacggc ggcctgctat cgtgccttgg tttacaatct
     4501 ctttactgtt gatggtaagc gcatcggctg aaatcaggct gcctttgccg tcaatatcac
     4561 ctttgcgtgc aagggcatac actttcggca ctaataccga taccgtttca ccgcttggca
     4621 agcgaaccgt ttgggtttca aaccaaacaa tatcgctggt caagcttgcc acttgctccg
     4681 gcgataaggt aatgcctaac cgaagattga atttctgcgc aaaggtgatg ccggcatcca
     4741 tcagggcttt atattggcta tcaaaatccg tatagtcgcc caaaaattgt ctgccggtta
     4801 agcggttgat ttgctctcga attaagcgct gttcataaaa accatcgccc aaacgtttat
     4861 gcacattgtt atggtcgtgg cgtagggcat tgaacatata atcactgctt aaccagcgtt
     4921 ttttatcggt gaaatccgga tcggtttcga tcagaacatg gctatccgct tgagggttaa
     4981 tgcgataaag cccttggttt ggcaaacggg tatcgaccgt cattgagcga acctcaaatg
     5041 cggctgcatt cgggcttggt atgcgttcaa tcgccattgt tggcggatta ggggcatcgg
     5101 gtagattacc ccgttcaacc tgattgcctt ccggcttcac ggcatttgct gctttagcgt
     5161 ccacataatc tgtataagcg gtcggtgaag tattttccag ctcgacaaaa atattcatat
     5221 ccttatggac ttcttttaaa cgagcgagag gaccatcatt ttcatcgtag cgggagtggc
     5281 gacgtcttgt gcctccgtgg tactcagtaa aagagaattg gcgccttccc agttcccaat
     5341 cttggcgaac agcatctgca tcatcaaggt tggcaattct actgcgacca atcgggttta
     5401 acgctttgcc tgcaataacc caacttttat cgttgataaa ttcatcgctt tgataagtga
     5461 gatcgccacc tgccaagatc tgtgccggta agctggcttt ggtgatattc tcttttacca
     5521 tacgctcttt aatccacaaa ttccagaaat gcgggtattc ttggcttaaa ttcgctttat
     5581 tgtgctttgc aatcgcttca tctaatgctt gaatattggc accatatttt gcttcccaat
     5641 caattaacgg ttttaatagc acataacgct gataagccgc ttctgccgct tcataggctt
     5701 tcagttccgc ttgatatgtt tgtagtcgtt tttggtattg ggcttccgtt tccgtagagc
     5761 ctctaacagg ttcaatcggt cttgccggaa ccaccggtgc aatgccttgc ccttgttcct
     5821 tctgtaattt ttcctgctct gcctcactta aatgctgatt cgctaaatct tcttcattca
     5881 ttgcttgaat aatttcaggc gtcatttccg gtgcatcttc agctggtggt gttaaattaa
     5941 accacgtcca tactgggtta tcttttttat aattacctgc aggtaataga gtacaatcta
     6001 cactttcatc attcgcacag ctttgagcat agggttttgc caatacggtc gtggcattca
     6061 gctggctaat atcggtaatt accggcaagt ttgcttcatc atacttttgc caatagctcc
     6121 acgttttgcg atagtagcct ttgcggagtt gattcacatt aattgtcggc aaatgcccgt
     6181 tatcatatac atcacttcca cctcgattat gcttatctct tggcaaaata aaatgttcgt
     6241 tcacagtttg gcgatcagtg gtctccaatt ccgaacgata atgactattt acattcgcta
     6301 ccttatccgc attcaactga atacgccctt cagcttcaat aatactgctg cggttatgta
     6361 gctgccctgc gttgccaata acggtatctt gctcatttaa ttgacgtcca atcgctatct
     6421 ctcctccgct atatattaat gaaccgcttt tcttattcgc ttcataaact agggtattat
     6481 tttcaattac tttagccgct aaaccgagag attgacgagc agcaatagtg gcagaggtcc
     6541 cgtctttatc ttgatttagt atcctctccg cacctaacgc caccttatcg ccataaatat
     6601 tccctgtgcc gatattgtgg atttcttgag ctttaatcac agtttgagcg ttatcgttgt
     6661 ccgagcggct attgattaag ccttcgttat agacggttga agttgcagtc aaacgggtat
     6721 ctgccgagct tattcgggca ttttgtgcat tggttatttg gtttgccgtg agctgcaagc
     6781 ggtcatttgc ggctaatttt ttgcgattga gaatatcgcc ctcagtctga ataatcatcg
     6841 acctattcgc attgatatct ttggtaatat caaagttctc ttgcaaattc aggcgaatat
     6901 cgcctgcttg tacatcacca tcaccggata acgctttggc agtgatctcc aaaccattat
     6961 ttgcagaaac ttttccctcg gtattcgtca ttgtgagtga ttttccgccg aaaatagcca
     7021 gatcgcccca acttaaaatt tccccattac ggttatttaa gctgtcgctg agggtaaatc
     7081 gtgctgatga gccgatataa ataccgcctt tttcattatt gagctgtttt gtgctgttca
     7141 gtacaaactg cgatgcaata atcccctgta ttggctgagg ttggcgtgcc aaggtacctt
     7201 gattttccac ctcgaaactg ttcatcgtaa gtgagccacc tgcttcaata agtgagccat
     7261 tttccgagat ccgattattt aagacagtcg gtacattgag cgtgatatct gtggccgatt
     7321 tcagtacccc accttggtta tccaaaagcg tgctatttag ggtgagattt cccacacttt
     7381 gaataacacc gtgccgatta tctacttgtt gggaaaccgt gagcgctaac tcttttactg
     7441 aactaatttc tccctgctca cggttatcta aggattgagc gttaatcgca acaccgctgg
     7501 cggaaattcg cccgccttga ttttgcagtt cgctagttat atcaagggtt tgctccgttt
     7561 gagaggtgat cacccccgat tgatttttta acgtattgac cgtaatcgcc tgtttttcgc
     7621 cactcaaaat cagaccttgc tgattattca gcaatggagc acgaatagat aactcgcctt
     7681 ttgcaaccaa tttgccatcg actgaatcca cagcatcatt taaatttagc cctaaacgct
     7741 tgccactact taatagccct tggttatttg ttaaacgatt accgtcaatc tcaaaatgtc
     7801 cacccactga aaagcgagcc gagtcagtat ggatactctc tgcttttagg cgaaaatcct
     7861 gctcaccagt ctgcttccaa accgagccac gagcatttaa attcgcttgt tgggcctcaa
     7921 tcacctctgc ggttagctgg cttccttcag tggaaagcca ttttggggtg gtgagcttga
     7981 tctgatttgc actaaactgc gcactattcg cctgaatatc gcccgatttt gcactgtatt
     8041 caacggtatg ggcattattt tggctctgat tggcatcaat ctcagctgcc gccacgttaa
     8101 ttttccccga agcgatattt tttccctgca cagtggtttt ttctggggca gtgagttgaa
     8161 tagttttccc tgccacagat tgagcttcca gcttccgtac ttcaccttgt gcagtgtcgg
     8221 ttacgtccac cccagcggca atcagtgagt ttttgtcggc gtgaatttgg cgggcggtgt
     8281 aggtgatatt gccttttgcg accgtttcgc cactttgctg gattttagtt tcggcttttt
     8341 tctgaatatt gccacccctc gccacgatgg aaccgctatt ttgaatatcg gctttcgagt
     8401 taagctgaat attgccctgt ttattttcaa ttttgccttg gttgtcaatc ccgtgttggg
     8461 cattgagttg cacttgtctt tgagcgttga acgtgccgct gtttacaatc cgcccttgac
     8521 tgtcaatggt gagcgtatcg gcacttgcac cgatatgccc agcgttacgc acgcccacgc
     8581 cctgttccgt accaatcagg tggattttgc cggcatacat tccgcccagc tcacccacat
     8641 caatcgcaac tgtgggcttt tcttcccctg caagcggttg atttgtatga ataatttgca
     8701 aattgttgtc cgaatttgac cgcttgacgg tgtttttgcc ggtaatgact ttagtctctt
     8761 ttttcgacca gacaccggcg ttgattttcg cttctcgggc gaggatatcg gtgtaatcca
     8821 ctcggctgtt gtccagccct ttgccagcaa ccgttacctt gcctttttcc actacaaaac
     8881 cttctaaatt gccttgattt atctgtggtt ttccggtggt cagcgtggct cggtcggcgt
     8941 tgataatacc gcagccgtca cagtgcaagc cgctcgggtt ggcgataatc acttccgctt
     9001 ttttgccagc cacttccaca taacctttca ttaccgaagg cttactggaa ttgacttcat
     9061 ttaaaatcac cttcgcttcg ccacgggcaa gatacgggtt gccttgcacc ataccggctt
     9121 gttgggtggc ggtgttggtg cggctgttgt tgagaattgc ccccttctcc gctacgtcaa
     9181 attggctgta tttattgtgg gaaagccctt tatcgttcgg ggtttgaata ttgatttgtg
     9241 gcagcccgtt ggcggtttgc aaaataatcg gttgctgatt tttcggggca gtgctatcgg
     9301 cttgaataat caaagtttcc gccatagcgt tgtctgataa ggtaacgaat cccaacgcac
     9361 agaacaagct gaacgcaagc ggtcgaattt tgcaaatttt ttgtaaaatt gcaccgcttg
     9421 tcatactttc actttctgat ttacctgcta attttgctaa ttcagatacc accacaatac
     9481 gttgtaaggt cttgctgaaa atagtgcgaa aacaatgctt attcataata attccttaat
     9541 agcacaatat acttaataca atatgcccaa tcattcatta aaaattgtaa ccaatattaa
     9601 aaccggcaac ggtgtctgag gttttaaacc cttccggttt tcgcatcggt ctaccggcaa
     9661 acacgtcata actaaatcct ttaactccac cccgaaaccc aatggctgtt cccattaaat
     9721 gatgtccgag ctgattttcc gttgcccaac cggacactcg accaccatct accgcccaat
     9781 aaaaagcgtg gttcggatta aattgccagc tcaactcatt acgccagttc cagccccgct
     9841 caccggaaag agtcagttca ccgtcaaatc cacgtatggt gtaacgcccg ccaatcgaaa
     9901 aacggtcttg cggaaccaga ggggttttat tccattgggc atttaggcta ctttgccact
     9961 gccatggctg cttgccccaa aaaaacggtt tcgtcaggct tgcacttgcc gtgatgattt
    10021 tagggcgaga agtcccttcg ccataatctt cctcgggagc agataatgcc cctcgtgctg
    10081 ccgtacctcg tttgaaatta gccgaaagct caagcgtagc ggtcgggaaa tattctttat
    10141 gcgaaaaacc cgcttcccaa cctgccattc ggcgtttttg tacttcaatt tctgagccgt
    10201 caatatagtt ttgcgactgg cgtggccaaa gtgaaccgga caagctcgtt ttacgtttgg
    10261 catcacgata aagcaaataa gaaaaggtta atttatcggt atcactttca ccggcgtaga
    10321 gatagctctt gtcaaaggca ccaaatactt cttgatgata acgatgatga gtgtgtgaaa
    10381 atgctaactg ccaatagcca aacggcacgg aatagtaaag cgtgagattt ttactggcac
    10441 gtctgccgtt atcatcacct ttttgtttca tcgaatgggt aaaagaggta tagaacaggt
    10501 catttgccga aaaaatatta tctatagaca gagtggcgga ggtttgtaat ttgcctgtgg
    10561 atttcgagcc ggcatcgtcc agcccaagat ttaagcgaaa tggaaacgct tgcgaatagc
    10621 tgatttttaa atcactgtct cccacctccg ctttttcgct tgagctgggt aaaatctcaa
    10681 tatttgcctc cgccgtcggc acccgtttta gattttccag agactgctca atatctcgca
    10741 cattcagaat atcgccttcg gcaaaagtaa aaccggttaa ggcgtgcagc ttggtaaaac
    10801 gcggtacttt gccgctatct accactaaag tattgcgtat tttgcccgga atcacggtta
    10861 aaactaattt tccgccacgt aaatcttgct ccgcagtaac cactcgtgta gtgacataac
    10921 ctttgccaat aatttcattt tggatttgct tcatcaacac agctaaccct tcaccaccaa
    10981 agcagtgagg taatgtcaaa tgaaatgatt ttactgcttt ttcaaacgcc cattggaatt
    11041 ggctggtagt cagagaattg tcaggagaat agtcaatgag agtgatttga tgaatggggt
    11101 aacaaggcaa ttcgtgattg gaaagagtaa gtgtatcatt gatttgtgtc tcgagccgta
    11161 catcagcttt cggctggaat ttttctgctt gattttgttg gtattgctgt tagcgatgtt
    11221 gctgggcagc atcaatttgt tgttgagttg catcaatgcg tgcttgttgt acaaggcttg
    11281 aagaatttgc ttcagcaaca aaagaagcac ttaacaatac cgtgcttaaa atcagatttt
    11341 gtggggtttt cataagatca aataagtaag acattcaacg tttttagtct ataaaaattt
    11401 atgttgtttt gcaaactccg ttttatggag ctttatacat atctgacgac tttggttttt
    11461 tatgctatta tctccgccat ttttatacta tagagaatag aataaccgtg ttagtttcag
    11521 attttcattt caacttaccc gatgagctga ttgctcgcta cccgactgcc gaacgctctg
    11581 ccagccgttt attacactta aatggcgaaa caggcgaatt tgccgatcaa caatttgtgg
    11641 atttatacga tcatatcaac gaaggcgatc tattgatctt caataacact cgagtgatcc
    11701 cggctcgcct ttacggtcga aaacctagtg gcggcaaagt agaggcatta gtggaacggg
    11761 tgctagatga acaccgctgc ttggctcacg ttaaagcctc aaaagcaccg aaagaagggg
    11821 ctgaattgat ctttggggaa gataagctag gtgaaggcaa aggctttacg gcgacaatgg
    11881 tagctcgcca cgatactctg tttgaattgg tgtttaacga agagcaaccg ttattcgaat
    11941 tgctacagca agctggtcat atgcctcttc caccttatat cgaccgcccc gatgaagatg
    12001 ctgaccaaga gcgttatcaa accgtttata gcaaagtgtt aggtgcagtt gccgccccta
    12061 ccgccggttt gcattttgac aatgcaatgc ttgaaaaact aaaagcaaaa ggggtggata
    12121 ctgccttcgt aacattgcac gttggtgccg gcactttcca gccggtacgg gtagaaacca
    12181 ttgaagatca taaaatgcac gccgaatatg ccgaagtgag ccaagaagta gtcgataaaa
    12241 ttctcgcaac gaaagccaaa ggaaaaagag tgattgcaat tggtacgaca tcagtacgtt
    12301 cggttgaaag tgccgcccaa gcggctgaaa aagatgggaa attgattgct ccgttctttt
    12361 ctgacaccgc tattttcctt tacccgggaa aaacctttaa agtcattgat gcgttagtca
    12421 ccaatttcca tttaccggaa tccacgctaa ttatgttagt ctcagcattt gccggctata
    12481 gaaatacgat gaatgcctac gcccacgcag tagaaactaa ataccgtttt ttcagctatg
    12541 gcgatgcgat gtttatcaat aaaaacccaa atgcgttgag tgatgttcct taatttatga
    12601 gggttataag ggaataacat tatgaacaaa aacaatcttc caaccatttt aagggattgt
    12661 tttcaatata ttcaataatt tggaagtacg atgtttcatt acgaataatg tgttcataat
    12721 aattcctttg ccaaatttca gaaatatcgg tattttgacg aacccattta gttacgccaa
    12781 ttttaaaacc acgcacaata gagccgattg ttcgtgatgt tccccgtaag ggcgaaacat
    12841 ttttcgccct tatacatggg gcaaatgatg atttgcccct acagtttcga cgatttcaat
    12901 aatgccatgt aaatgattag gcataatcac aaagctatgc aagcttacat ttggaaaatg
    12961 atcgggtata tcttcccaac attgacgtac aatattccct atcttattaa gcctcatttc
    13021 atcatcaaca atctcaccga gaaaatggtg tttattttta caacaaatag taatgaaata
    13081 gaatccttgt gatcggtaat cataatgctt tagacgaatt gaacgcctcc tatgaatctc
    13141 cggctgatat ttctgcattt ttcttattcc ttaataaaac tgcttatacc aaggggaaaa
    13201 tgcccccctt gcctgctcaa tttcaataga acttgggtaa aattttactc ttatcattcc
    13261 cgtttctacg gtatttaata cattaatatg tcttctgttt aatctctcaa taatctgttt
    13321 attcggtaat ttccatgggt tccatcttcc agcagaaatc actgcaaatg ctggctgggt
    13381 aatcgataat aaagtttcgc cagtgctgct tttgctaccg tgatgtccaa cctgtagaaa
    13441 atcaattttg ccgagctgat gggcaaattg gcgttcttgt tccacgccag aatcccctgt
    13501 cagtaatatc ttcaagcggt cgtttttggc taaaataacg caagagtctt ggtttttagc
    13561 tcgttctgca atgtgtgacg ggtaaattgc caataattgc cattcgccaa attgccacga
    13621 tgttccggca atacaaggct cgggatttat attgtgatac gtcaccttgc ttgaactaat
    13681 taaccttgct tttgggtatg cttgcaataa ctccactacc ccacctgaat gatcattatc
    13741 atcgtgactt agaaaaatcg cctctacctc aatgccattt cgctttaaat acggcaagat
    13801 ttccattttt gccattgaat tgcgactacc atcatttgct tgccaactgg agccggtatc
    13861 gtaaattacc gctttatttt gttgataaat gaacgccatt gccagccctt gcccaacatc
    13921 aaacataatc cattctgttt gggtttgatt aaagagctta gggagataaa aactcagatt
    13981 gaacaatagg gataccgcta ctgcacttaa ccacttttta taagatagcc gatataattt
    14041 gcaatacagc aatactaaaa ccaataaatt cagtgaaagt aactgccact gttgccaatg
    14101 gcttaatgca aaccacgcat tagaaaatgg atctaacagc cataggctaa attgagcaag
    14161 atagtccgcc aacagccacg ttgaaaacag attgtcggtc aagagcgtaa ataaaataag
    14221 cggtacaagc aaaaagctat acaacggcac aataatcagg ttggcaagca gtgcaaaagc
    14281 agagatgccc tcaaaaaagt agagttgaac cggtgagaaa atcagccaaa tgccgatttg
    14341 taagtgcaaa agcgataacc acaagcggtt aaattttgtg atttttttac gatattcatc
    14401 gtttaaaaat cggctaagag gaaaatattg ataccataaa attaaacttg ctaccgctaa
    14461 aattgagagc caaaaactat cagaaagcag gctcaatggg tcaattaaaa tcagtaacgc
    14521 cactattctc ccccaatatt gccaaggggt atagtgtcgc cgcagaactt ggcaaagcaa
    14581 gacaaacgca atcgccagca acgctctggc ggtcggcacg gcaaaaccgg ctaaatagct
    14641 gtaaccaaat gcggtgatga agctaactat tcttgcaaaa taaagtgaaa atccgaccgc
    14701 ttgtaatgcg gtaagctcgc ttttcaagca aagccattgc acgcctttgg caaagtaaac
    14761 accaaacaac attgccagcc cgatatgcaa gcctgaaatg gcaattagat gggcagtagc
    14821 ggtttgttgg aattgccccc agtgttctgt tttcagccac gccctttcac caaaagccag
    14881 agccaataaa aagccttgcg taggcaaagc gtccgtttca gctttcactt tattcagcca
    14941 atttgttcgc aagctataat cagttttggc taatgtttcc accttgcgaa ccgttgctgt
    15001 catattgata tgattggcaa aataccaacg ctgtcggtca aaattaccga tattgctacg
    15061 agctgaaata ggacgaagag ccagttcggc ttgatagaat tgattaagta acaacggctg
    15121 tttcgattgc cagttcaagt agatcttctc gcctgtattt agtgtcgcaa tcgctgtttg
    15181 ataatcggtt tgttttaaga ttttactgat ttcaaattga acaggcgttt tactagcagt
    15241 cgttttttcc gcattttttg caacttgaat gatctgaata tagccaatac aaaccaataa
    15301 gccgagtaca gccgttaatt ttgagcgtag ataaacactc aatatcagca ctaaggttcc
    15361 tattactata cccacaaata gaaacgcttt aggcaaccat aaaataggca gatgaaatag
    15421 aatcagggca atacaaaaac ggtctaaagt cataattcgg cttacttttt aaagctgagt
    15481 atgccgtttg tgcttaatat tttcagaata aattttcaga ttttcgacac agttcgcaaa
    15541 aatacttgaa aaaataaagg cagacttttt agcctgcctt ataaagaaga gatattatgc
    15601 tgatttttga tcttcagcgt aacttactgc tgcagtgaat aatacgtctg ttgatgaatt
    15661 taatgcggtt tcaaccgagt cttgaatcac accaatcaca aaacccaccc caattacttg
    15721 agcagcaata tcgtttggaa tattaaataa actacaggct aatggaatca ataataatga
    15781 accgcctgcc acacctgatg cgccacaagc acagattgat gcaactacgc ttaatagtag
    15841 tgctgttgcg aaatcaggtt gaataccttg tgtataagct gccgctaggg ttaatacggt
    15901 tacagtaatc gctgcacctg ccatattaat acttgcacct aatggaatag ctacagaagc
    15961 gatctcatca cgaacgccca aacgcttggc taaattcata ttcaccggaa tgttggctgc
    16021 tgaactgcgg gtaaagaatg ccgttacacc actctctcgt aaacaggtaa atgtaagtgg
    16081 gtatgggttg cggcgaattt tccaatacac taataatgga tttagtacta atgccacaaa
    16141 taacattgcg ccaactaaga ctactaataa acgtgcgtaa tcttcaaacg catcaatacc
    16201 attgatggca acagtttcag ctactaaacc aaatacccca ataggcgcaa atgcaatcac
    16261 aactttcaca acaaacgaaa ctgcgttagc taaatcattt aagaatgctt ttgaacttgc
    16321 cgaaccatgg cggaatgcaa tccctaaacc gatagaccac gcaagaatac cgataaagtt
    16381 tgcattactt aatgcgacta atggattatc aactaagtta aaaataacgg tttttagaat
    16441 ttcaccaatg ccttgtggcg gggttaaacc gtctgggctt gcagtaagct ctaatgtagt
    16501 tgggaacata aagcttaaaa caacagccgt taatgccgca aaaaatgtac ctaatacata
    16561 aagcaccaga atcggcttta atttgctatc tgaaccaact tctttatttg caatcgcagc
    16621 caaaactaat acaaatacta aaataggcgc aatggcacgt agtgatttca caaaaaattg
    16681 acctaataca ccaacgctgg tagcccattc tttattaata aatgccagca atacccctag
    16741 cactaaacca atggcgatac gtaatactaa attaccgcca agaatttttg atgataatga
    16801 ttgactcata acccttcact tctgtaagac aacaaaaaat aaggataaat aaaatttatc
    16861 cgcctgaaaa aataggttta taagattagc ggaaaataaa caaatatgga ataa
//
LOCUS       DANMGB010000043        16840 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.043, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000043 DANMGB010000000
VERSION     DANMGB010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16840
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.043"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..418
                     /gene="nudB"
                     /locus_tag="PXG19_001024"
     CDS             <1..418
                     /gene="nudB"
                     /locus_tag="PXG19_001024"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL6066332.1"
                     /translation="ILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGETPLEAAER
                     EVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLLPLDSEQEP
                     ILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            431..1171
                     /locus_tag="PXG19_001025"
     CDS             431..1171
                     /locus_tag="PXG19_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6066333.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            1301..1828
                     /locus_tag="PXG19_001026"
     CDS             1301..1828
                     /locus_tag="PXG19_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066334.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            1895..2473
                     /gene="ruvC"
                     /locus_tag="PXG19_001027"
     CDS             1895..2473
                     /gene="ruvC"
                     /locus_tag="PXG19_001027"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL6066335.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(2539..3819)
                     /gene="murA"
                     /locus_tag="PXG19_001028"
     CDS             complement(2539..3819)
                     /gene="murA"
                     /locus_tag="PXG19_001028"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL6066336.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(3929..4189)
                     /locus_tag="PXG19_001029"
     CDS             complement(3929..4189)
                     /locus_tag="PXG19_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6066337.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(4222..4545)
                     /locus_tag="PXG19_001030"
     CDS             complement(4222..4545)
                     /locus_tag="PXG19_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL6066338.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(4557..5192)
                     /gene="mlaC"
                     /locus_tag="PXG19_001031"
     CDS             complement(4557..5192)
                     /gene="mlaC"
                     /locus_tag="PXG19_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL6066339.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(5238..5762)
                     /gene="mlaD"
                     /locus_tag="PXG19_001032"
     CDS             complement(5238..5762)
                     /gene="mlaD"
                     /locus_tag="PXG19_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL6066340.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(5783..6559)
                     /gene="mlaE"
                     /locus_tag="PXG19_001033"
     CDS             complement(5783..6559)
                     /gene="mlaE"
                     /locus_tag="PXG19_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL6066341.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(6552..7355)
                     /gene="mlaF"
                     /locus_tag="PXG19_001034"
     CDS             complement(6552..7355)
                     /gene="mlaF"
                     /locus_tag="PXG19_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL6066342.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            7580..8974
                     /locus_tag="PXG19_001035"
     CDS             7580..8974
                     /locus_tag="PXG19_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL6066343.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(9026..9787)
                     /locus_tag="PXG19_001036"
     CDS             complement(9026..9787)
                     /locus_tag="PXG19_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL6066344.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(9774..10226)
                     /gene="nrfF"
                     /locus_tag="PXG19_001037"
     CDS             complement(9774..10226)
                     /gene="nrfF"
                     /locus_tag="PXG19_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL6066345.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(10216..10749)
                     /locus_tag="PXG19_001038"
     CDS             complement(10216..10749)
                     /locus_tag="PXG19_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL6066346.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(10746..12650)
                     /gene="nrfE"
                     /locus_tag="PXG19_001039"
     CDS             complement(10746..12650)
                     /gene="nrfE"
                     /locus_tag="PXG19_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL6066347.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(12920..13867)
                     /gene="nrfD"
                     /locus_tag="PXG19_001040"
     CDS             complement(12920..13867)
                     /gene="nrfD"
                     /locus_tag="PXG19_001040"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL6066348.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(13867..14544)
                     /gene="nrfC"
                     /locus_tag="PXG19_001041"
     CDS             complement(13867..14544)
                     /gene="nrfC"
                     /locus_tag="PXG19_001041"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL6066349.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(14544..15200)
                     /gene="nrfB"
                     /locus_tag="PXG19_001042"
     CDS             complement(14544..15200)
                     /gene="nrfB"
                     /locus_tag="PXG19_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL6066350.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(15219..16721)
                     /gene="nrfA"
                     /locus_tag="PXG19_001043"
     CDS             complement(15219..16721)
                     /gene="nrfA"
                     /locus_tag="PXG19_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL6066351.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         5038 a         3733 c         3340 g         4729 t
ORIGIN      
        1 tatccttgtg gtgatttatg ctaaaaatac ccaacgagta ttgatgctac aacgcaagga
       61 cgatcctgat ttttggcaat cggtgaccgg ttcgatcaat attggagaaa caccgctgga
      121 agcagcagaa cgggaagtga gcgaagaaac cggtttgcaa acttttgagc aaaaacaacc
      181 gcttgttgat tgccaaaagc agatagaatt tgaaattttc ccgcattttc ggtataaata
      241 cgcacctaat atcacacatt gtgtcgaaca ttggtttttg ctgccacttg atagtgagca
      301 agagcctatt ttaaccgaac atttggcata tcgttgggtt tcagtggaag atgcggttcg
      361 actgactaaa tctcccaaca atgcccaagc aatacaagaa tatttaacat caaaataagg
      421 aaacaacaga atggcaggcc atagtaagtg ggcaaatatt aaacaccgta aagcggcaca
      481 agatgcacaa cgcggtaaaa tttttactaa attaattcgt gaattggtga ctgccgccaa
      541 actcggcggt ggtgatacct cttccaaccc tcgtttgcgt gcggcggtgg ataaagcgtt
      601 atccagcaat atgacccgtg ataccatcaa ccgtgcaatc gagcgtggtg taggcggtgg
      661 cgatgatacc aatatggaaa ccaaaatcta cgaaggttac ggcccgggtg gtacagcagt
      721 gatggtggaa tgtttaagtg ataacgctaa ccgtacgatt tcccaagttc gtccaagttt
      781 cacaaaatgt ggcggtaacc taggtactga gggttcggta ggttatttat ttagcaaaaa
      841 aggcttaatt ttagtggcaa atgccgatga agatgcctta actgaagctg ctattgaggc
      901 cggtgcggac gatattcaac cacaagaaga tggtagcttt gaaatttata ccgcttggga
      961 agatttaggc tcagtgaaag acggcattga ggctgcaggc tttaaaattg agaatgcaga
     1021 agtaacaatg attccatcaa ctaccgttga acttgacgca gaaactgcac caaaacttct
     1081 tgatttaatc aaccgccttg aagattgtga tgatgtacaa aacgtttatc acaatggtga
     1141 aatcagtgac gaagtcgctg cattactgta ataaaaaaat cacgcaaaat aagcataatt
     1201 taggttatgc ttatttttta tgaacttttt tcctatatta ctgactaacc taatgtagtt
     1261 tatatgctac tactttacta taacatttta aggagagtct atgaaattag tgaaatttgt
     1321 ccctgcccta gcagcaactt tagtattagc cgcttgctct aatgcaaaca cacaatctgc
     1381 tcctcagcaa gctcaggacg ctgtgactaa agtggctgaa caagcaacac agcaagtgaa
     1441 tgaaattgca ggtaatgcac ctcgtgcaag tggtgcagta aaagtagaaa aagcaactga
     1501 tggtgcaaaa tcaattgtat atcgttgcca aagtggtaaa cgtgtaactg cgaattatgt
     1561 cttccaagga gaagaggcaa aagcagtaaa tctattagtc caaagcggcg gtaaaacaca
     1621 aaagatccca acattaactc gtgatgcctc aaaccaagat tctacttcat tcaaaacgga
     1681 taaatattct tgggatttag acacaggctt taccttatca tctaatggcc agtcaggtat
     1741 gctaaccaag tatggtgcta aaacagatac catcgttgct aaattatgtg atgtagataa
     1801 agcattaacc tcaaaattaa ataaataatc tttcttgatt ttactactca taagcgagaa
     1861 gataatatct tctcgcttat tttattgcac aaagatggct attattttag gaattgaccc
     1921 cggctcaagg gtaacaggtt acggtgtgat tcgccaaaac gggcgacagc tggaatattt
     1981 aggaagtggg gctattcgaa ccacggctga agatctgcct acccgcttaa aacggattta
     2041 tgcaggcgtg agtgaaatca tcactcaatt tcaaccaaat atgttcgcca tagagcaggt
     2101 atttatggca aaaaaccctg attctgcctt aaagctcggg caggctcgag gaacagcgat
     2161 tgtagcagcg gttaatcacg atttacctgt gtttgaatat gccgcccgat tagtcaaaca
     2221 aaccgttacg ggaattggtt ctgctgataa agtacaagtg caagatatgg taacccgtat
     2281 gcttaaactc tccgccaaac cacaagccga tgcggctgat gcattagcca ttgcgattac
     2341 ccacgctcat tcaatccaac attcactgat tgttgctaag caaagccagc agaatgtgag
     2401 tagtgagaaa gagcaaattt tagcactaat gaaaacccgt tatagccggg gaaggtttag
     2461 gttaaaaggc taactcaata taaaatgacc gcttggaact aatgtttcaa gcggtcattt
     2521 tttgagaaaa ttttacaatt actcgccttc aaaaggagct gagaaacgtt caattctcgc
     2581 cccaatctga cgtaattttt cttcgatgtg ttcatagcca cggtctatgt ggtaaattct
     2641 atccacaatc gtttcacccg ttgcaataca gcctgccaac actaagctga tggaagcacg
     2701 caagtcagtt gccattactt ctgctgattt taactgctct acaccatagc aaattgcaat
     2761 attaccttca atttccgctt tggcacccat acgaatcagc tcaggaatat gcataaaacg
     2821 gttttcaaaa atcgtttctg taatacggct tgtgccttct gcaactgtat ttaataaggt
     2881 aaattgagct tgcatatcag ttgggaaacc tgggtgtggc atagtgcgaa tgttcactgc
     2941 tttcgggcga cgacctagag aatcaagcgt gatagtattt tccgtcacat caacctgcat
     3001 tccagcttca cgtaattttt cgatcactgc atcaagagtg tctgctttgg tgttacggca
     3061 agtaattcga ccaccggaaa tagccgctgc cactaaaaat gtaccggttt caatacgatc
     3121 cggcactacg ctgtgttcgc aaccgcctaa atgctcaacc ccttcaatgg taatcatatc
     3181 ggtacctgca ccagaaattt tagctcccat cgcatttaag aaatcggcag tatctacaat
     3241 ttcaggctca cgagcagcat tttcaataac agtagtacct tttgctagag tacctgccat
     3301 catcaccgat aaagttgctc ctacgctcac tttatccata tagattcttg caccgtttaa
     3361 acgaccgttt gaagttgctt tgacatagcc ttcatcaagc tcgattttcg cccccatttt
     3421 ttcaagaccg gaaatgtgca tatctaccgg tcttgccccg atagtacaac cgcccggtaa
     3481 agaaacttgc ccaagttgga accgggcaac taatggagct aacgcccaaa ttgaagcacg
     3541 cattgttttc actaattcgt aaggtgcaac gtaattattg atcttactcg catcaatatg
     3601 taccacgcct ttatcgctac ctttttcaac cgttacccct aattggcgta agattttaaa
     3661 agtggtgtcc acatctttta aatcaggcac attttttaac gtaactgttt tttcagccaa
     3721 aatagcggca aataaaatag ggagtgcggc atttttcgca cctgaaatat cgacagtacc
     3781 atttaaagaa aatggaccat acacacgaaa tttttccatt tgggagatcc taaaaaataa
     3841 taatttgtag gggcgaaaaa tttttcgccc aattttccaa cgtttacaaa agagtttggg
     3901 cgaatagtga ttcgccccta catttcatct atccaaccat atttagcaaa cgctcagttt
     3961 tccatttttc cacgctgaat actttaatgg ttaaagcgtg aatcgcatta gtagtgaaat
     4021 actcagctaa aggggcataa acagcttgct gttgttttac ttttgaaaga gaagcaatgc
     4081 tgtcacttac tacaataacg ccaaagtggg cattctcgcc ttgagcgtgg acttctgttg
     4141 catcagataa tgcttgtttt aaaatttctt caatttgtga tggattcatt ctgacttcct
     4201 aaaatatgat tggtaactca ctcaaataat aaattgctca aaccaaccgt ctaaatcgta
     4261 taatgcagcc aaagttctga cagaatctgg cgtattaatc aaactgtttg gtatgatttt
     4321 atggtaatga ttcagtaatt cagcaagtaa ggtaaaaccg gcagaatcaa tccgagtgat
     4381 ttcttttaaa tcccaatata ggctttgttt ccctgttgga gataaaaaag aagcacgttg
     4441 cttccataaa gggagcaacg tgttacgagt taattcgcct gatagtttca caaaaagact
     4501 ttcgttattt tgctgaatgt cccattgtaa tgttttttga ggcataacta aactacttat
     4561 tttaaagtga taggctgttt tgcagattgt gccacttgtg caattaaggc atcaatccct
     4621 ttttgacgaa tcacacccgc ccattcgttt tgcttggttg caaccatact tactccttca
     4681 gcggccatat cgtatgcttg ccattcacct gttttgctgt ttttacgcca tttaaaatct
     4741 aatttgatcg gctgtgcagc acctttacct gacacgttta cacgaatgct tacgatagat
     4801 ttaccatcca ccgatttcgg gctttcaatt tgcacacttt gatcttgata ctgggttaac
     4861 acctgagcat aagactgctc aacaaattga ccaaaagcat taaagaatgc ctctttttgt
     4921 gcatcagtcg cagccgataa gtttttccct aacactaatt ggcctgcata tttcacgtga
     4981 acgtgtggca ttaaatcgtt acgcacaatg gtacgcaaat attcagggtt tgatttaatt
     5041 ttcgcttgat ttgctttaat atcgccaaat aatttatctg cggtttgttg cattaataca
     5101 taagggctag tttcagcaaa tgcggtggtt gaaaataatg cagaaactgc cactaagcct
     5161 gttacgataa tttttttaat gttttttaac attattgatg ctctccaaaa ctctaaatta
     5221 gaggttgttg tacttaatta ctctgctttt ggttcagcag aatcacttgc tttttcatct
     5281 tcagttttat ctgacttttt atcaccatat aagaactgac cgattaaatc ttctaacacc
     5341 attgcagaat tggtatctac aaaagtatca ccttctttca tcattgcagt ttcaccttcg
     5401 attacgaagc caacatttaa cgcaacgtat tgctcgccta ataagcctga ggttttaatt
     5461 gagagcgagc tggtatcggg aatttgatta aaactttcat ttaccgctaa tgccactttc
     5521 ggggtgtagg ttttgttatc aagtgaaata tcagccactc ggccaactac cacaccgcca
     5581 actttaatag gcgcacgaac ctttagtcca ccaatattat caaaagttgc atacagggtg
     5641 taagttttct catttgagaa gccctgcaca tttgctactc ttaagcctaa aaagacaaga
     5701 gctgcaagcc caagtagtac aaataagcct acccaaaatt catatttaat tgattgacgc
     5761 attgtctgtt cctttcaaaa aatcaaccgc cgaacattat cgcagttaaa ataaaatcca
     5821 atcctaaaat caccagtgaa gcatttacca ccgttcttgt ggtcgcttgg ctgattcctt
     5881 ctgaagtcgg tacgcaatcg tagccgttaa ataaggcaat ccagaccacc gcaaaggcaa
     5941 aaatcacact tttaataaag ccgttaatta aatcgctggt atttaccgag ttttgcatta
     6001 ccgaccaaaa actgccacca tcaacgcctt tccaatctac cccgactaat gagccgcccc
     6061 aaattccgat agcggtaaaa atagcagcta acaccggcat tgaaatcacg cctgcccaaa
     6121 agcgaggagc gatgatacgt ctaagcggat caaccgccat catttcaaga ctggaaagtt
     6181 gctctgtggc tttcatcagc ccgatttctg cggtcaatgc cgaaccggct cgccctgcaa
     6241 ataataatgc agtaactaca ggaccaagtt ctcgtaaaag cgagagtgaa accaaagttc
     6301 ccaagctact ttcggcggca aaatcgacca ataccacata gccttgtaag cctaacacca
     6361 ttccgataaa taagcccgac agcataataa ttaagagcga ttgcactcct aacacataaa
     6421 gctgtttaat cagtaacggg gtatgttttc taaattcagg tttaccgatt aatgctcccc
     6481 ataacataaa agcggaacgc cctaatgtac ggataaaatt aatcaccacc gccccgatag
     6541 agctaataaa attaaccatt aaatagctcc tccgtataat cttttgctgg ataatggaac
     6601 cgcaccggac catcagcttt accggctaag aattgtacca cttgcggatc ttcgcttgcc
     6661 tgtaaaattt ccggtgtacc ttcagcaatc actcgtttat ctgccacaat ataagcataa
     6721 tcggcaatac ttaatacttc tttcacatcg tgagacacca caatggaggt caaattcaat
     6781 gcctgattta actctttaat cagctcgaca atcacaccca tactaatcgg atcttgcccg
     6841 gtaaacggct catcatacat aatcagatcc ggatctaacg caatcgctcg agcaagggcg
     6901 gcacgtcttg ccataccgcc ggaaagttcg gacggcatta aatttgccgc acctcgcaac
     6961 ccaaccgcct cgagcttcaa taacaccaat ttgcgaatta gctcttcggg taaacgggta
     7021 tgctcccgaa tcgggaaagc cacattatcg aaggtagaaa tatcggtaaa taacgccccc
     7081 gattgaaaca acatccccat tcgttggcga atttcataca actctttgtt attggctttg
     7141 caaatatctc tgccatcaaa taaaatttcg cccgattcag gtaaaatctg cccaccgatt
     7201 agcctcaaca gggtggtttt accaatccca gaaggcccca taatggcagt cactttacct
     7261 ttctgcactt gcagattcag gttatcgtaa atcactcgct cccctcgctt gaaggtcaag
     7321 ttttttactt caaccaaatt ttccgttttt gtcatcaaat aggactcaaa ttaataaaag
     7381 tgatatttat ggtctatcaa atttgccaga atgtcaaaaa acttttaata atctgacaaa
     7441 aatctgcctt tacaagcggt cagatttgct aaattttttg caaaccggct gaactgaaaa
     7501 agaaaggtct tgtcttagcc aatacgagcg ttttcactcg tagattataa aaacatagga
     7561 tatgaggaac attcacaata tgaacaaaac aatgaaaaaa tcatttttaa ctgcattcat
     7621 tttaggctca accattgccg caatgccggc gtatgcagaa gcaacattac ccacagccgt
     7681 aaatgggcaa gctgtgccaa gccttgcacc aatgctggaa aaagttcgcc cggcggtggt
     7741 gagtattgca gtagaaggta aaaccaaagg cgatagccgc cgcagtcgtg aaattccgga
     7801 agaatttgaa tttttcttcg gtcctcacgc cgatttattc ggcaaccgct catcagctcc
     7861 acgcaatttc cgtggcgttg gatcaggtgc agtcatcaat gccgaaaaag gttatgtgat
     7921 taccaataac cacgtgatcg acaatgccga taaaattacc gtaaaacttg aagacggacg
     7981 tgaatttaaa gctaaattag ttggtgctga tcccctttca gatgtggcgt taattcaagt
     8041 tgaagatcca aaaaacttaa ctgaaattaa attcgccgat tccgataaat tacaagtggg
     8101 cgattttaca gttgcaatcg gtaacccgtt tggcttagga caaactgtta cttcaggcat
     8161 catctcggca cttggtcgtt caaccggtca atccgatgaa ggctatgaaa actatattca
     8221 aaccgatgcg gcagttaacc aaggtaactc tggcggcccg ttaattaact taaacggcga
     8281 attaatcgga attaacaccg ctattatttc tccaagtggt ggcaatgccg gtatcgcctt
     8341 tgcgattcca agtaatatgg caaacagctt ggtgactcaa attattgagt ttggtgaagt
     8401 aaaacgtgga atgttaggca ttaaaggcgg tgaattgaat gctgaccttg ctaaagagtt
     8461 caatatttcc acccaacaag gggcatttgt aagcgaagtc ttaccggatt ctgctgctgc
     8521 taaagccggc tttaaagcag gtgatgtgat tactgaaatc aacggtcaaa aaatccgtag
     8581 tttcagcgaa ttacgagcaa aagtagctac ttcaggtgta ggtaaagaga ttgaacttac
     8641 ttacctgcgt gacggcaaag aagccaaagc aaaagtgacc ttacaatcgg attctgaagc
     8701 caaagttact gcttcaaacc tcattccggc attaaaaggg gcagatttta acaactacaa
     8761 tgccaaaggc attaaagggg ttgaaatttc taacgtagaa aaaggctcga ttgctgaaat
     8821 gcgaagcctc aaaaaaggcg atattatcat cggcgtgaac cgccactcgg tagaaaacat
     8881 tgccgattta cgcaaaatat tagaaaccaa gccatctgtg gttgcactca atattgtgcg
     8941 tgacggtgca aatttctatg tgattttgca ataaaccttt tgatccactc aaacaaaagc
     9001 cgatgacaaa aatcatcggc ttttgttatt gctgggaatt taacatctgt cgtgccattt
     9061 ccatactttg gataatcgct ctgcggttga tagaatcatt attgctatct aacactttac
     9121 gccaattatc gagagcttgt tgaaaattgt tatttaaaaa gctgtcggag gctagcagga
     9181 gtaaactggc attttcattt ttatccaact gtagggcttg ctcgataatg gcttgaattt
     9241 caacggtcat tttctgcccg ttatcgtaat aacgagcggt ggcaatcgcc cccaaaatag
     9301 ccgctcgttt tccgagtagc ttctcggcat tatcgtagca aaccagtgcc gaatcaaaat
     9361 cattgcttaa cgcataagcc tgccctagtt cgtaccataa atcaccgtta ttcgggtttt
     9421 ctcgaagctg gttttgcaga ctcaaaatat agcgttcatt tttcgatgtg ccgtgtgcat
     9481 cgctcatctg ttgttgaaaa tcttgatgtt gttgcaaacc tgattgcacc acttgataac
     9541 gtccggaaag cccatagtaa gtcattgcta acaacaaaat cgccacgcaa ctcaggcttg
     9601 cgattttagc aagcggtcga ttttgagcat tattttgcaa aacgctctgt tcaaattgcg
     9661 ttcgttcaaa ttggtaacgt tgctctgcct cacgctcaaa ctcttgtctg acgtcatctg
     9721 caaaatgttg ggcaaattta accgcttgtt ggtagttttc ttggcttaat tgctcacgcg
     9781 ttttcatttt tgttgccttt atttttgcga gttcgccaca aaatagctag aaataacagg
     9841 ctaaacaagc caaccggcaa gccccataat acccatgtct gtggcgtgaa tggtggatcg
     9901 taattcacaa aactgccgaa acgctcggtc ataatgcgga taatttcctc attacttttc
     9961 ccttgattca ccatttcata cacttcaatt cgcatattgt aagccgccgt cgcattggat
    10021 tcgaccaaat tttggttctg acattgcaaa catcgcaacg aacgagccag tgaaatcgcc
    10081 cgtacccgat ccgcctcatt ttgaaattga aaggtgtcca ccatttcagc ttgaaccgtg
    10141 ccgacaaata gcaacaagcc aaatacaagc ggtaatattt tgcggatttt ttgcaaaaag
    10201 ccgatggaaa ttatgctatt tctcatttct gagagcctct aatttgggta ggaaatcctg
    10261 tgcaaaatca gggttgtaac ccttttgttg gtaacgcact acaccgtgtt tatcaatcaa
    10321 ataactggaa ggtgcagaag agactttcag ggtttggatc aaaaagcctt tttcgtaatc
    10381 atcaataatt aaactaaacg gatttcccca gtttttcaat gcgttgaggg catcatttgg
    10441 gcggtcgcta taagttaagc cgacaatcgg cacgcctttt tgttttagtt ccaacaaaat
    10501 cgggaactct ttaatgcacc aagtacacca gctcacccac acattgagaa tataaggctc
    10561 tttcggcaag ctgttgttat ttaaatgcgc gttactatca agtaagttct tgcctacaaa
    10621 ctctggaaac ggcttgccct gccaatcttc agtgggagca agggcatctt tattcattaa
    10681 cggcacagtc aaaaagccaa caataactac aagtaacagg agcggaataa gtaacaggat
    10741 ttttttcatt ttttgttttc tctacgataa ccgaataatg ccaacagggc ggccattacc
    10801 atcatcatac cacctaacca taaggcttgc acataaggct tatagtgcaa acggaaggca
    10861 tattctaaat tgccgaactt atcccccatc acaatataaa tatcgtctaa attgtggtgg
    10921 aaaagcccta cttctgccat tgtcatcgtt cttacatcat aatagcgtct ttccggtgtg
    10981 acggttgcca gcaactgttc atctcggctg atagaaaaaa cggcttgctc ggcggtgtag
    11041 ttcggaccga tgagatcgtg ataatcttca tatttaaagg tataaccggc aagttccgct
    11101 gcttgattcg gctttaaccg cacgccgatt tcatcgccgt aataactgtt catcattgcc
    11161 ccaatcacgc aaaccgcaaa gccgatatgg gctaaccgca tcgcaagcgg tcgaatttgc
    11221 cacatttttt gcgaataggg caaatgagtg agaataatcc agatcgcaag gctgataaat
    11281 atggtgggta acggctgcaa agcaaaatgc tctctttgcg agatggaggc ataaatcaac
    11341 cctaacgcta aaccgactgc aatcggcagc aaccaaagtt ttaccaatat ctgcttattt
    11401 gaaatctgtt tccagcccag caccaccgca aagcccatta ctatcattaa cagtaacgct
    11461 agtggcgtga atacgctatt gaaatagggg gcccccactg aaatcgatcc ccaattcatc
    11521 actgtgaaga tcatcgggta gaaagtcccc agcaatacca cagaagcagc cacactaaat
    11581 aagccgttaa tcaataaaaa tgccgtttct ttagaaagta agttgaaacg cactttgcct
    11641 tgccagagat tcgctcggaa tgcaaacaga gcaagggcaa tgaaacttaa gccgaagaat
    11701 aagatcagca gtgccattcc tctgtcggga tcgaccgcaa aggcatgaac cgaggtcagt
    11761 acacccgaac gaacaataaa cgtgcctaat aggcttaaag caaaggcgaa aatggcaagt
    11821 agaatcgtcc aataatagaa aatgccacgc tgttggctca caattaaact atgcaccaat
    11881 gcggtgccaa gtagccaagg cattagggag gcattttcca ccggatccca aaaccaccag
    11941 ccaccccagc cgagttcgta atatgcccac cacgccccta aaataatgcc ggcggtgaga
    12001 aatccccacg aaatcatcgt ccacggacga agccaacgca taatcgcagc gtccattccg
    12061 cctgaaacga gggcggcgac aatcattgca aagctcaccg caaagccgac atagcccaag
    12121 tagagcaaag gcgggtgaaa gatgagccca atatcttgca acattgggtt gagatctcgc
    12181 ccttcaggtg gtggtggaaa gccacgttca aatgggctgg aaaccaatag aatgaaaagt
    12241 agaaaaccta gtgcaattag ccctaacatc gctaaggttc ggttggcaaa caagcggtca
    12301 attttttgcg aaaatttgca aaataccgca gaccaaatca caagagcggt gagccaaaac
    12361 agcattgagc cttcgtgtcc gccccaagtg gcggcaaatt taaaaaaatc ggggagctgg
    12421 ctgttggaat gagcggcaac gtagataacc gaaaaatcat cggttagaaa agcataagct
    12481 aaggtagaaa aggaaaatgt ggtaaaagca gcttgcaaat aagtgaaaag cggagccaat
    12541 gccagccaat gatattgctt gcgaacttcg cctagaagtg caaaaccaac ttgaaaaatg
    12601 gcactaattg cagccaataa aagtgaaaaa tagccgagtt ccggtagcat aaaaaatcca
    12661 aaaaatgacc gcttgtgaat gtaaaaaaag ccctctccac ttgtgggaga gggacagatt
    12721 tttcttcgtt cagaagaaaa atcagggaga ggggaattaa ataattttgc taaaaataac
    12781 aatactccct ctctctgaaa aatatttctg aacgaaatat ttttcggtct caatactcgc
    12841 tacgctcgct ccttcggagc cgttggcaaa gccaacgttc aaatgtaaac atttgtccca
    12901 caaggggaga gagtatatcc taacttgcaa ccgttagttg ccctgcataa aggataaagt
    12961 aacgcaagca gagtacaccg attaagtcga aaacggaaat taagataata aatttcacgt
    13021 tatgtttcaa gcggtggcta ccaaaaatat tggcaacaag cggaatcgca ataccgatta
    13081 acattacgcc tatccagaac acattccccc agaagccgtt aagtgcatgg gttaaagcga
    13141 gcgatttatc tgctccaccg aagtgtaagc ccacaaagaa cgctacaatt aagcctaatt
    13201 cggttaccat aatcggcact tcaaatttgt gcataaagtg gacttcgtgg ctttcaccgg
    13261 ataacttgcc tgcgagtaaa atcactagga aagttgctgc aatacctgac gatgcccctg
    13321 atgccaagaa caatgccggt aacacagggt tattcagcat tggataactc actaacgccg
    13381 agagtaagaa accggtgtaa gcaccaagta cagcagccaa tacgaataag ataaattcaa
    13441 ttggttttaa cagcttcgct tcggcaaaat cgatcaaacc agagaccaca ggtagatacc
    13501 gaacaatcca atctttaaac attatggcga tccaaaccac caatactgcc atataaagtt
    13561 ggaataacat tacccccatc gacattactg aggtaaagtt atagttgaac attaatttcc
    13621 agaatgtcca aggtttggtt aagtggaaaa tcagtaacag taagccgata atggttggta
    13681 atgtgccaag aatagccgca ctacgaataa tccagttttg gcttggtttt tccattttga
    13741 caccgctatt acggtaagca atcgctaact gaaccgcacc tgatgaaata ccaagtagga
    13801 ataagtaaat agcgatagtg ccatcccaaa caaggtttgg ggtttggaaa ggtacatatt
    13861 cattcattat ctatgttctc ctttaccaaa tggaatgtga tataaattcg gctccgtgcc
    13921 taatgccgtt ttggtgcgat aaaccggatt atttttcact ttatggaaaa tatcgctact
    13981 tggatcattc atatcaccaa aggttaaagc tttagtcgga caagcctcta cacaagcagg
    14041 ctgtttgcct tctgcaagat tggtatctcg gcaaaagtta catttatccg ccgatttttt
    14101 ctcagggtga ataaaacgta cacgatacgg gcaaaccgca atacagtatt ggcaaccgac
    14161 acacaaatct gagtgtacat caataatccc ggtttcagga tcgataaatg aagcaccggt
    14221 cgggcaaaca ctcacacaag gtgcattggt acagtgttgg caagattggc ggaaaaactc
    14281 atattgtacg ttcggaaact caccgaaagg ctcactacgg ataatttcta aacgagaaac
    14341 cccttccggc actttgttgg tggtgcgaca agcgtccata caagccgtac agccgataca
    14401 ggcagtttca tcatgaacca tcgcatagcg gattttcttt tgttctttct cagtagcaag
    14461 agttatggag gtggcaagcc ctgtacttgc cacaactgcg atagcacctg cccctgagac
    14521 gaaatctcta cgggtgcaag tcattatttt gttccttttg cttctgtggc tttcatttca
    14581 ggatttttaa attcgcctga atgaattttg gtatgacaat ccgtacaaag tttaatgcga
    14641 tctttttcag gaatgtcttt catcggatct ttttccgggt gaatttcatg acagttggta
    14701 caagcaattt tagttgcgtg cgtgtcgtga gcccagaatt tttcacgcaa tttctctgcc
    14761 gtatggcaag caaaacagac ttgattttgc tcatttaccg aacgttcaag tgatgggtta
    14821 cttgctttac cgtgtgggtt aaaacgcatt acgtcttttg cccctttgcg gtggctttca
    14881 gaaatattac cgtggcaact tatacaagtg agtggctctc cattattcgg gcttttcaca
    14941 tctttttgga aatgtttgcc tgcgtgatgg aaaggcttac ctgttgcgtt tgccgattcg
    15001 tgacattgag tacaatattt atttggatca cggcgtgcat cttgagctac ttttgcatca
    15061 tcagccgttt ctgattgcca aagaggtttt ggctgctcag gcattaacgc attcgcactg
    15121 gaaattgcaa aaaaacctgc aaatacgacc gcttgtatga gggcgactgc tcgtcctgct
    15181 tttgagatta attttttcat agttcacctc aagctacatt attttgcttc tgcttttggt
    15241 gctgctaccg gtttgtctgc ttcttctgcg ggtaataaac ctttagcacg agcttctttt
    15301 tcccattgag gaaccacagt ttttaagaac tcatcttttg ctgcttgctc tttaggaata
    15361 tctaaaccaa tagcaagttg tgctttctct ttagttgaga tgtccggaat cgccactggc
    15421 gttgttacac cgtgtttcgc taacactaca cctaatttag cacgggcatc tgctgcacgg
    15481 tcgatacctg ttgcgatggt acgtaacatt acatcaggtg cgtggaagtg gttaccgtga
    15541 cctgccgcag agtaatccca acgccattga gcgtgacgaa ttgccattaa gatctctttc
    15601 atctcttctt gagttgctcc agcttcccaa gcagctttcg cttcaaagtg agctttcact
    15661 aattgatctt ctaagcgaat cattgcctct tttacttcgt gtttatactc ttttacacgt
    15721 ttttccaatg tttctttgct ttgttcatga caagttttac aagtcgcttc aaattggtca
    15781 aacggattac cgattttgtg gtcagtataa actttgccgt ctttgtcttt cacttttggc
    15841 atatggcaat caatacaggt tacaccattt ttcccatgtg taccttgtga ccaaacttca
    15901 aaatctgggt gctgcgtttt tagcatcgga gctttcgata aagcatgagt ccagtctgta
    15961 aaattgattt catcgtagta tttttcaatg ctatctacat ctacaccttt atcccaaggg
    16021 aaagttacat ctgttttatt tttgaaatag tactccacat ggcagttagc gcacacagca
    16081 gggcgtttac catgtttatc taaatcctca aacttccaac caaccgtatt caatgcacgt
    16141 aatacgtgag gacgtgcaac acgtagtgca ggtttacctt gtttaaactc ttctgatgtc
    16201 gtgtcatggc agtctgcaca acctattgag tttacaattt cagcaccata tttcgcccat
    16261 ttaggatcaa aatatcctcg ctcacctttc tcctcaatta agcgtggaac atcagggcct
    16321 ttacatgtcc aacaagccat aggttgtgga ccatcatttt catctttagg cgcgccggtg
    16381 cgcaaaatat cacgcacatc ggtaactgca taaaagtgac ctcgtggttt attataatct
    16441 ttcgcaaaag catagcctgc ccacaaaata acataacgag ggtcagcctc taacgcactt
    16501 cctcgatctg tggattttgc agttgacttc caagaatcgt attgtagcgg atatttttct
    16561 gcaaataggt ggtttgcaga ctcaattttc acgcctaatt tttcatgctt aactgcttta
    16621 tctgttaatg attcagtttt cgcctcttca gctaaagcag tttgtaaaca ccccaatatt
    16681 gaaattgttg ccacagctag gctttttatt aaaaatttca ttttggctct cccaatcagg
    16741 taaaaataat tagagaaaaa taagaatttt tcctattaaa attaataaga taatccctga
    16801 tattcagttg cgagaatatg aaatttaaac caagccgact
//
LOCUS       DANMGB010000044        16749 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.044, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000044 DANMGB010000000
VERSION     DANMGB010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16749
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.044"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..370)
                     /locus_tag="PXG19_001044"
     CDS             complement(<1..370)
                     /locus_tag="PXG19_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6066352.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLE
                     ILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNLFCYAKNKNELNELNDLT"
     gene            complement(760..3246)
                     /gene="torA"
                     /locus_tag="PXG19_001045"
     CDS             complement(760..3246)
                     /gene="torA"
                     /locus_tag="PXG19_001045"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6066353.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(3265..3461)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(3465..4580)
                     /locus_tag="PXG19_001046"
     CDS             complement(3465..4580)
                     /locus_tag="PXG19_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6066354.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(4722..6473)
                     /locus_tag="PXG19_001047"
     CDS             complement(4722..6473)
                     /locus_tag="PXG19_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066355.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      6637..6793
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            6782..7807
                     /gene="moaA"
                     /locus_tag="PXG19_001048"
     CDS             6782..7807
                     /gene="moaA"
                     /locus_tag="PXG19_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL6066356.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            8308..8784
                     /gene="moaC"
                     /locus_tag="PXG19_001049"
     CDS             8308..8784
                     /gene="moaC"
                     /locus_tag="PXG19_001049"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL6066357.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            8777..9022
                     /gene="moaD"
                     /locus_tag="PXG19_001050"
     CDS             8777..9022
                     /gene="moaD"
                     /locus_tag="PXG19_001050"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL6066358.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            9024..9479
                     /gene="moaE"
                     /locus_tag="PXG19_001051"
     CDS             9024..9479
                     /gene="moaE"
                     /locus_tag="PXG19_001051"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL6066359.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            9512..9994
                     /gene="ybeY"
                     /locus_tag="PXG19_001052"
     CDS             9512..9994
                     /gene="ybeY"
                     /locus_tag="PXG19_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL6066360.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            10072..12090
                     /locus_tag="PXG19_001053"
     CDS             10072..12090
                     /locus_tag="PXG19_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL6066361.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSFKIIYRFYYIFLCFCSC"
     gene            12155..13345
                     /locus_tag="PXG19_001054"
     CDS             12155..13345
                     /locus_tag="PXG19_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL6066362.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(13452..14753)
                     /gene="folC"
                     /locus_tag="PXG19_001055"
     CDS             complement(13452..14753)
                     /gene="folC"
                     /locus_tag="PXG19_001055"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL6066363.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(14763..15659)
                     /gene="accD"
                     /locus_tag="PXG19_001056"
     CDS             complement(14763..15659)
                     /gene="accD"
                     /locus_tag="PXG19_001056"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL6066364.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            15968..16749
                     /gene="mazG"
                     /locus_tag="PXG19_001057"
                     /pseudo
     CDS             15968..16749
                     /gene="mazG"
                     /locus_tag="PXG19_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600778.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT         4895 a         3505 c         3468 g         4881 t
ORIGIN      
        1 aagttaagtc atttaattca tttaattcat ttttgttttt tgcatagcaa aataaattat
       61 ctgtaacttt accaactttg cctaaaaaag atggtttcct tttcttttcc caaattaagt
      121 tagaaatgaa attcttccgc ccaaaaattt catcaagcat aattttcaaa tagtgacttt
      181 cgttatcatc aagagtgatc caaattgaac catcttcggc aagtaactct cgcagaattt
      241 caaggcgtgg atacatcatt gaaagccaaa tggaatgctc taaattatca tcgtagtggg
      301 taaaggccga ttttgtgtta tagggaggat caataaaaat acatttgact tgccccgcat
      361 aaaagggcaa aagagatttt aaggctgata aattatcacc ctgaataatt aaattttgct
      421 tgactttaga taaggtttca gcagaagctg agctgtcggc tgtcggctgt cggctgtcgg
      481 ctgtcggctg tcggctgtcg gctgtcggct gtcgggcaat attatgcgag aagtccggca
      541 actcacgcaa taggcaatat ggggtttgtt ttgctttttt gacggcttct tctttgccgt
      601 accaagtaag ggttgtcata aaatgcacct gaaaagtaaa agtggattat tgtaacaagc
      661 ggtcaaaaaa atagaaagtt ttacaaaaaa ttaagcaaat ttaaccgctt gcaacataga
      721 aaaggcacag ttttatactg tgcctttggt tatatgaaat tagccttgtg tgtatttagg
      781 ctctttaaat actgttactt ctggtgcttg tccggtgaat ttttcaacct gtaccgtagc
      841 ggtatttggt gagttaccct gtgctaattt tgatgtgcct tcatcacggg ttagcacgtt
      901 agggttgccg tttttacata gcggttgctc gctggtgccg agatcgagcg gatcgtacca
      961 agctccttcg tgcaaggcta atgtaccttt gataatgcca tctgtcacca ccgcaccggc
     1021 taatacttga ccacgtttgt taaaaatacg tacaatatca ccgcttgtaa tgccacgagc
     1081 ggcggcatct tcagtatgga tcaacaccgg ctcacggtca ttaaccgcat attgtttgcg
     1141 taatgatgag taagctaact ggctgtgtaa acgccattta gagtgtggag tcaccaatgc
     1201 caacggttct tctgcggtgg ttttacccga gtattcttcg tgttccatcc aagttgggtg
     1261 acctttacag tcatcataat tcattttggc aatcacctca gagaaaatct caattttgcc
     1321 ggacggtgtg cctaatggat ttaggagtgg gtcattacga aattcttcat aacgaaccca
     1381 ttttttcgct ttgtctgatg ctttaaaaga aagtggttta ttctcttgcc agaatttctc
     1441 gaatttcggc ataatcacac gatttttgcg tgctgcctca aatgcagttt gatagaaact
     1501 ttgtagccaa tccatttcag atttgccttc ggtaaattcc gcttctttgc ctgcacgttt
     1561 ggctagttcg gcaaaaatat cgtagtcgtt ttttgcctca aattgcggtt cgaccacctg
     1621 tttcatcggg aaaatattca tcattgaata atcgcccgac atagttaagt cattacgctc
     1681 atagctggtg gttgccggca gcacgatgtc agacatacga gccgttggtg tccaatggca
     1741 ttcattgacg ataatagtat ccggtttttg ccacgctttc accaaagtgt tggtgtcttg
     1801 gtggtgggta aacggattac cccctgccca atagacaatt ttgatatcag gataagtaat
     1861 ttgtgtgcca ttgtaatcaa tggttttgcc cgggttgagc agtgcatcgg aaatacgagc
     1921 caccgggaat gaagattttg atgtttcatc taaccaggtt ttcgctccgg cttctactgc
     1981 cggatttgct gtgatagagc ctaaaatgcc ccctgtggca ctcggcacgc cgccgtttga
     2041 gtaatggtag cttaaaccga aaccaccacc cggtaagccg atttgaccta acattgcagc
     2101 tagggtgact aacatccaat gcccttgttc accgtgtcgt tggcgttgaa tcccccagcc
     2161 tgccattaac attgtgcgtt tagattggaa atcagtcgct aattttttaa tggtttcttc
     2221 cggcacacca caaatttgac ttgcccattt tgcatctttc ggttgattgt ctgttttacc
     2281 gagcagatat tcttcaaact tctcaaaacc ggtggtgtat tttttaagga atgcttgatc
     2341 gtgtttgcct tcagcgacta aggtatgagc cataccgagc attaacgcaa catcagtgcc
     2401 ggtgtttacc ggtacccatt ctgcacctaa aaattcgcaa gattcacttt ttaccgggtc
     2461 aatacagata atgcgtttcc cgctctcttt gagttttttg aagtattcaa taccttgttg
     2521 atcggtagaa gtccacgcaa tgcgtagcgt atttaacggg ttagctgacc aaagcaccac
     2581 aatatctgaa ctttctaaaa tcacttccca actagtttgc tgttcgtaca cctcgattgt
     2641 acccaagacg tgtggcataa tcacttgagc agcaccggta gaatagtcgc cttttacacc
     2701 aacaaatccg ccggtaacat ttaaatagcg ttgtaacagt gtacgggaag cgtgtaatgc
     2761 cccagaacta taccaaccgt aagaaccacc aaaaatagca ttcgccccgt gagcctcacg
     2821 aacacgtttc atttcattcg caactaattc aaatgcctta tcccacgaaa ctcgcaccca
     2881 ttcatcacgc ccacgtagag tagtatcttt attaccttct aagtagcctt tacgcaccat
     2941 tgggtatttt actcgtgttt caccgtgtac ttggtctgct accacgtgtt gcaattcatt
     3001 tggcacagaa atctcaaaaa cagaatcaga tttcaccact ttgccatttt ctaccactac
     3061 acctaaaggc ccccagtggg cggcagttac tactgttttc atctcggctg ctttggcact
     3121 ggtggaagct aatgccccca ctacaccggt agtaccactg gctaaacctg caccggcagc
     3181 taagcttaat gatgaatttt ttagaaaacc gcgacgactt acgtcaatat tgtcttgttt
     3241 tttcataata aacctcgttt gaagttaagt taaaaataga cacctttcta aagtcgagtg
     3301 gataaaccat ttctcgtgta tccattggta aaagcaccga cggtaatttt tgcaaaatgt
     3361 taggaaaaaa tgaccgcttg tagtaggtgc tttacggctt gctaccatat ctctgctctc
     3421 agcagacact taggctcaca agctcggtat cctctaagtt gcaattaatg ggaactgcct
     3481 gctacatctt ttgcattacg ttggagatag atagtcaccg cacgcacatc atcagccgac
     3541 atagatgttc tgtctttcat tgaatttacc accccaatcc attgatttgc ggtgtaatgt
     3601 tctgccccaa tcggtgcatg gcaaccgcta cagtgtgttt ggtttaagtt atcgccaaaa
     3661 tgatttagtg cagtaatatt ggcagtgact gcatttttag gagcagtaat ttcaaaattg
     3721 atttctttcc aatttgagtt ggtgacatta tcaaacactg tttttgtgac attcactttg
     3781 ctttgagcgt catcaggtag aagagcaacc ataatacgct tgcctaaatc catatacacc
     3841 acagattccg caccttcttg ttgccagcca ttaaccgttg ctttaacctg ctcgccttct
     3901 gctgtccatt gatgtaattc tgcataaggt aacaagcgaa tttctccacc ttgagcgagc
     3961 tgcactggag tcattgcgag cgtataaagg gttttatcat ttgtgctaaa ttccgcaccg
     4021 tgtttagcta attcgcccat tgctgcggca ttatctaccg gcacatcagg cataaaatgg
     4081 gcaattcctt tatggcaatc aatacaggtt tgattagttt cttgggctag tttgtgcatt
     4141 ttctgtgccg cttctgtttg ttcagaaagt accatcgcat caaaactatg acagctttta
     4201 caggtcatag aatcgttttc tttcatttct gcccaaacac gttgtgccat ttctagacga
     4261 tgggcttcat aggcttcttg atcaggtaat ttattggtta caacggtgtg ccaaacatct
     4321 tttaatgcga tgattttagc tttgacataa tgcaagccgt cttgtggtag atggcaatcc
     4381 gaacactcgg ctcgaattcc cttacggttg gaaaaatgga cactgccttc ccactctgcc
     4441 tgtgggtgag tcatagaatg gcagctcaca caaaattctg ttgagctggt ggctttcatt
     4501 gcatattgtg tgccacctaa taccgcagca cctaatgcca taataccgac aaatacagca
     4561 atttttttca tcttagccat aaattacccc acttaataca ctaaaaatta aagacagagg
     4621 cattgtatta actcccaaga ggtataaaaa taagtaaaaa tacctattac ctcgaaagag
     4681 tgagaataat ttgatctaag gcaaaaatat gtagtgaaat tttaggcttt ttcagagaac
     4741 cacggcggta agataaattg tgcattggca aacaactccg gtgcaatcac acggctctgc
     4801 ccttgttgga tttggtaaac caactgtggc aagctgatag ataagtcgtg ggtttctgcg
     4861 taagttaatc caatttggct atcggtatta aaatagtaag tgccgtttac cccataatgt
     4921 ggctgtaagc ggatcgcatt ggagacggct ttaaaatgcc gtggtgaaac actctgtttc
     4981 cacgcatttg ccagaatatt cgcttggtca taagcaatac tggcttggga ataagtgggc
     5041 gatttgccga aaaaccgttc gtaatgttgg ctaaactgtc tgcctaaata attttcgctt
     5101 aacccactat tggtactcca aagaacgcct tcgcaaagtt tctcgtgtgg caaaaacgcc
     5161 gaaggtgcat aaatactgta aataatggca tttgttgggt tgcgaatgaa cgtttgataa
     5221 aactgtacaa tatcttctgc aaaataagag gcaaacacaa taatggaagg tgcgagatta
     5281 tgcacctgtg ccattaatgt ggcataatta tcttgctctt gggtgagttc cagataatcc
     5341 acattccagc cttgctcccg caaacttagg gttaaacttt caataccgat atcaactttt
     5401 tgccaactca ccgttaccac catcaccgtt ttattctgaa gccaaggggc ataatggtaa
     5461 cggtaatatt gcagaaagtg agatatacct aagccatagg ttacatcact ggcgcaaacc
     5521 tgaaacatat tttcaattcg ttgattcggt aaattttggg caagtttatt tgagccacta
     5581 tgggttgcaa tatgcaaata aggaatgcct ttagttgcaa ttaattcgtg tacttccggc
     5641 aagtagcagg cataagcggt ggaaatcgca tcaacttctt gatcaaataa atgatggtat
     5701 gcctgaagaa tacttgcttt atctttaaca taaaacccag ccgttgcaac ctgtacttct
     5761 ctgccgtgaa taccaccttg ttgattgatg gtctcaaccg caagttgagt gccgttaagt
     5821 agctctcggg tatcgatttg cccaataccc tgttcaacat aaggcacgcc aataataatc
     5881 ggacgactat gatggtggtt tatcgtaaaa atcggtggtt cgtgtcgagt tgaagccgtt
     5941 acaagcggtt gttttttcgc gataatttgc aatgccagtt gttcaatgtt aaagctggca
     6001 agaatggatt gggttagttt tcccggtgtg ggtaaacaga ttaaatgttc ggtaatggca
     6061 aaaacagcta ataaggttcg gcttttggta tgtgttttcg caaaaatatt ttcgatatgt
     6121 ttatcaacag tccgtttgct gatacaaagc tcattggcga tatcctcatt gctcaaacca
     6181 ctgctaatta gagtgagaag ctcaatctcc cttttactca gtccataagg caaatcggta
     6241 tgctctgctt gagtcaatac aaacgattgg tggcgttcta ggctgatctt aagccattga
     6301 tggtttgaac tatagtaaaa ctgcaagcta tttttatctg aatagagcaa tgcctgtgca
     6361 tagtggcaaa tttgcggtaa ttcagcaaaa tagtctgccc ctgctttgtc ttcccattct
     6421 gatatttcgc cttgttcatt tactaaacaa gaccatcggc tacgtttatc cattctcacc
     6481 tcgaactaaa aacgttagct aaaatagcaa aattatctcg gcattaatat gatataaatc
     6541 aaactaagca acggttgcca gatttttata ggtagagcat acaatttaaa ttatacctct
     6601 tgcctaatta ggtttctcac cataaaatga aaaccaattt attgaagact ccgagcatta
     6661 tttcctaact ctaaaaatta aagacaaatt tttgatatgg aatttatgcc agtaacagca
     6721 taaagctgtt caaaggataa cttagaaatg ggttgtcctc tcgtgtttag aaaggtgtca
     6781 aatgcagtct attatcccaa ttaaaaacgt gggtgatgat gtcgtttcag gtttagttga
     6841 tcgctttcag cgtcaatata cttatttgcg actatccatt actgatgttt gtaacttccg
     6901 ttgtaattat tgcttgcctg atggctataa gccgccttca cataagcaaa cttttcttag
     6961 cgttgatgaa atccagcggg tggctaaagc ctttgccaat ttagggacgg aaaaaatccg
     7021 tatcaccggt ggtgagccaa ctttacgcaa agatttcctc gaaatcgctc acactatttc
     7081 acaaacaccc ggtatccgta aagttgccct aaccaccaac ggctatcgcc tagagcgtga
     7141 tgttgaactg tggcaacaag ccggtattac cgatattaat gtgagtgttg atagccttga
     7201 cccacgccaa tttcaactga ttaccggcga gaacaagttg caatctattt taaagggtat
     7261 tgataaagcc tttgaaattg gctacccaaa aattaaagtc aatgcggtgc taatgaagca
     7321 atataccgcc cctgaattgg ataaattcct cacttggatc aaagacaagc cgattcaaat
     7381 gcggtttatt gagctgatgg aaaccggtga aatggatagt ttcttccaag ctcaacatct
     7441 ttctggtcaa tcggtgatga cccgcttatt acaagaaggc tggcaattac aacccaaagc
     7501 gatgtctgac ggcccggcaa aagtgctttc tcaccctgat tttaaaggcg aaatcggctt
     7561 aattatgccc tacgagaaaa atttctgtgc ctcttgcaac cgcttgcgtg tttccgcact
     7621 tggtaaactg catctttgct tatttggtga agaagggatt gatattcgtg atttactggc
     7681 aagcgatgag caacagttac agcttgaaac ccgcctaaaa tcttccttac aaggcaagcg
     7741 agaacaccac tatttgcata ttggggatag tggggttagg aataatttgg cgagtatcgg
     7801 tggttaaaca accaccgagc gtgttttttc tgttactttt ctttgcttcg ccaaagaaaa
     7861 gtaaccaaaa gaaaggcgac cccagatttt ccttaatcct tcgcttgttg ctaacttttg
     7921 ggacgaactt ttcaaactcg ccaactgcgt tggctcaaac acgaaaagtt gtcctcaaaa
     7981 gtttacgcaa tcgctacggc ggaaaatagg ggcaagcggt acattattta agatttttgc
     8041 aagtttttat ttaaaaataa ccgcttgtaa tgttccagct tctcccttct gaaccgcctg
     8101 agcgactttg aatttatagg aaaaatttag tgtttgagcc aacgaagttg gcgagtttta
     8161 aatttttccg ttaaacaaat tcaaataaaa tgaagatagc ggtgaagtag ggtgtgcttt
     8221 ctttggttac tttctttgca caagcaaaga aagtaacaag aagacgctca atattaattt
     8281 tacaatcaaa tttaaagaga caaacaaatg acaaccttca cccacatcaa ccaaaacggc
     8341 gaagccaata tggttgatgt ttcaatgaaa caagaaaccg tacgcattgc ccgagcggag
     8401 gcatttgtgc gaatgaatgc cgaaacatta caaatgatcg tcagtggtaa tcaccacaaa
     8461 ggcgatgtat tcgcaaccgc tcgaattgcc ggtattcagg cggcgaagag aacttgggag
     8521 ctgattccac tctgccaccc gttattgctt tctaaagtgg aagttcaact ggaggcgttg
     8581 ccggaaagca accaagtgcg aattgaatca ctctgtaaac taaccggcaa aaccggcgtg
     8641 gaaatggagg cattaaccgc agctagtgtt gctgctctga ctatttacga tatgtgtaaa
     8701 gccgtgcaaa aagatatgat tattgaaaat gtaagattac ttagtaaaag tggcggaaaa
     8761 tcaggagatt tcaaggttga ttaagatact ttttttcgcc caagtgcgtg aacttgtggc
     8821 aacggataga ctagatgttg agcctacttt taccactgcc gaagcgttgc gtgaacactt
     8881 aagccaacag ggtaaaaaat ggcaacttgc ccttgaaaaa ggcaaactgc tggttgcaat
     8941 taatcaaacg atctgcccgc ttgaaacgga gatcaaagac ggcgatgaag tggcattctt
     9001 cccaccggta accgggggct aaaatgtttg aaaccctgat tgaagtacaa gaagctgaat
     9061 ttgaccaaaa ccgcatttac caatggctca gtgaacaaca tagcgtgggg gcagccactc
     9121 tattcatcgg taaagtacgt gaaatgaatt tgggcgataa tgtttccggt ttgtttcttg
     9181 aacactatcc ggcaatgact aaaaaagcat tgcaagaaat tgtggctcaa gctcgcactc
     9241 gttgggattt acaacgcgtt gcggtgattc accgcattgg gcaactgcat accggtgatg
     9301 aaatcgtatt agtcggtgtg agttctgctc atcgaggtga tgcctaccac gccaacgagt
     9361 ttattatgga ttatctcaaa accaaagccc cattttggaa acgagaacaa acccaagccg
     9421 gtgaacgttg gattgaaggg cgtgagagtg accaacaagc cgccaaaaaa tggcaataga
     9481 aaaaatggca ataatttgca aaaggtaacg aatggaaaat ttatatattg atttgcagat
     9541 cgcctgcgaa aataccgaaa acttaccaag tgaacaacaa ttttatactt gggtacaaaa
     9601 agccctcgca gttgaggcaa aaaccgatga tttccctgag agtgagatca ccattcggat
     9661 tgtcgatgaa gcagaaagcc acgagctaaa tctgacttat cgtggtaaag acaagccaac
     9721 caatgtgcta tctttcccgt ttgaggcccc cgaaggaatc gaaatgccac tattgggtga
     9781 tttagtcatc tgtcgtcaag taatggaaaa agaggcggaa gaacaaggta tttcagccga
     9841 atcccattgg gctcatttgg cgattcacgg cacacttcat ctgctcggct acgaccatat
     9901 tgaggaagat gaagcagtgg aaatggaaag cctcgaaacc gaaattatgc aaagtttagg
     9961 gtatgaagat ccgtatcttt cagaaaaaat atagtcttgt aggggagggt cctgtgccct
    10021 ccagtactcc attataatcg gacaggcaca ggagctgttc ctacaagtta tatgagaacg
    10081 atcgcaatca taacatctcc taacaatgcc gactttattc aacaaggcta tttttacatt
    10141 cccgaaaatc atcagcttaa agctatcccc ttttccaatg ccaaaacgat tttaggacaa
    10201 gaataccctt ttgccattta tactatgcaa gcagaaaatg gggtgaattt taacttagat
    10261 gcttttgcaa tacttgccgg cactattcaa gaaaacggta ctttattttt gctttgtcct
    10321 cagtgggata atttggaaaa tgaattagat ttcgatgcgt tacgttggaa cgaaaatcag
    10381 gctattgcct gcccgaattt ctatcaacat tttaaacaat tagtcgctaa atttggtttt
    10441 gaagtcagaa ctaatttgcc aaaattaccg gctacaagcg gtcaaattcc ttcaaaaatt
    10501 taccaattaa cgcaagaaca gcaaaatatt ttgcaaaatc taccgcttga tcctgccgat
    10561 attcatttga ttaccgcccc tcgtgggcgg ggcaaatcta cccttgcagg gcgacttgca
    10621 aaagcgttac ccgcacaaaa taaggtatta attaccgcac ggtcttattc tgcattgccc
    10681 agtttttggc gttcggcaga gcaaaaaatc ccttttttcg cacctgacaa tttaatcgag
    10741 caagttaaaa gtaaaaacat ttcacctaac caatggctct ttattgatga ggcagctagc
    10801 ctacccttgc cgatactcca cacactttgt gcctattttg aaaaagtggt tttaaccaca
    10861 acaacccaaa attacgaagg cacggggcga ggatttgagc tgaaattccc ggtaatgttg
    10921 gataaaccgt ttaaacattg gacgttatct caaccattgc ggtggagcga aaatgatcct
    10981 ctcgaagcat ttgtgactga gttgctatta ctttccgaag aaaaatctcc cctctttagc
    11041 aaagagggga agggggagat ttattcgctt cgctcacact atgtgccgtt gctaaagcaa
    11101 cgttcaaacg caaagcgttt gtggcagaag caattatcga agaatataag ttattcgaat
    11161 aagcatttac aggaaaaaat cgctttctac cacttactcg ccaacgccca ttacaaaacc
    11221 actccaactg acttacgccg tttatttgat ggcgaaaatc agcttttgtt ttcacaacag
    11281 gaaaacgagc aacttatcgg cggaatttgg gcaatgcaag agggtggttt agatgaaaaa
    11341 ttaacccaag ccatttggct aggggaacgc cgtccgcaag gcagtctagt ggctcaatat
    11401 ctctgttttc aagggaattt accgcaggct tgcaaattgc attccattcg catttctcgg
    11461 attgcggtat tgcctgaaaa gcaaaatcaa ggcgttggca agcggttgat ttctcagttt
    11521 attttgcaaa attcggtaga aaaacgaccg cttgatttta tctctgtgag ctttgggcta
    11581 actactccac tccacgcatt ttggcaatct tgtggtttcc aacttgtgca aatcacaccg
    11641 aataaagagg caagcagtgg ttatcaaagt gcaatgatga tttacccgat ttcggagcaa
    11701 ggaaagttat ttgcacagca ggcaacccaa gcctttgcca gagatttcgc ccttcagcca
    11761 tttttcacgg aaatttgtga ggaattgcaa aatttcgaac aatttcgacc gcttgccaca
    11821 cacaatttag atgaacgtga ttggaaaaat ttaaccgcgt ttgctcatgg caagcggacg
    11881 ttttcagcgg cgtatgtgag tttaaaacgg ctttatttat cggataaagc acgcttttca
    11941 gagctggata tttttgaacg aaaagggcaa aaaatctcca aaatggaggt ggaaaattat
    12001 cgaaaactcg ttttgcaaaa cttaaacaat aaatcattta aaataattta taggttttat
    12061 tacatttttt tgtgtttttg ctcttgctaa atctgcaatt taatcgtata aattcactgt
    12121 ttatttttca ttttgatgag gaactccaat gtcaatgttt agtcacattc aagctgctcc
    12181 ggcagactca attttaggct taggtgaagc gtttaaagca gatagccgtg aaggtaaaat
    12241 caaccttggt atcggtgttt atatgaccga tgaaggcaaa accccgattg tcaaagcggt
    12301 aaaagaagca gaaaaacgtt tattagagac ggaaaacagt aaaaattatt taaccattga
    12361 cggtgttcaa gcattcaatg cggcaacgca agcgttatta tttggcgaag gggctgaagt
    12421 gattacctca ggtcgtgcta aaactgcaca gagtttaggt gggacagggg cattacgcat
    12481 tgcggcggaa tttatcaaac gtcatacgaa tgcgaaaaat gtatggattt caaccccgac
    12541 ttggccaaac cataacggca tttttgatgc agtaggcgtg aatgtaaaag gctatcgcta
    12601 ctacaataaa gagactaacg gtttagattg ggaaaattta attgccgatt taagccaagc
    12661 ggaagccgga gatgtggtgt tattgcacgg ttgctgccac aacccgaccg gaattgaccc
    12721 aacacctgca caatgggaac agttagcagc attatctgcc gaaaaaggct ggttgccgtt
    12781 atttgacttt gcttatcaag gctttgcaaa cggtttagag gaagatgctt acggtttacg
    12841 agcttttgtg aaaaataacc gtgaattgtt ggtcgcaagc tcattctcga aaaactttgg
    12901 gttatataac gagcgtgtcg gtgcatttac cctaattgca gataatgctg atgatgccaa
    12961 ccgtgctttc actcaaatca aatcgattat tcgtgtactt tactctaacc catctgctca
    13021 cggtgcaagt gcagtagcag ttgcattggc tgatcctgac cttaaagcac aatggattgc
    13081 ggaattagat gaaatgcgta accgtattaa agaaatgcgt agccaattag tgcagaaatt
    13141 aaaagaaaaa ggggcaaaca aagacttctc tttcattact gagcaaaatg gtatgttctc
    13201 attcagtggc ttaacaccgg agcaagtgga taagttaaaa gatgagtttg caatttatgc
    13261 tgtgcgttca ggcagaatca atgtagcagg cattaccagc aaaaacattg atgctcttgc
    13321 cgatgcgatt gtgaaagtgc tttaattaaa ccttaaagat atatagaggc ataagcctga
    13381 gtgcttgtgc ctctttttta tcttttaggt acaagtgtgg acacttgcac caacgttgat
    13441 tattcgtaga actaggtttc caaccaaagc ataaaatctg ctaccgtatg aaatgagccg
    13501 aacaccagca caatatcatt ttcgttggct gtttcaaaca atactcggct tgcctgtgcc
    13561 acattttcat agctacaagc ggttgaattt ggcaaaacgt ttaccaattt cgctaacacc
    13621 gcctcgcctg tttgtccacg ccaacaatct agccctgcac aatgccattc atcaataata
    13681 ttagctaatg gctcgacaat accggataaa tccttatctt ctaacgcact aaacaccgca
    13741 tagatttttt gatttggttg ctttaactcc cgcagtttgt cagctaaata acgtgctgcg
    13801 tgtgggttat gccctacatc aataattact tttgcagccg gtttaggttg agaaaaatga
    13861 gtaaaatcgg tatccgtcag ggtttgaaaa cgccctgtca tttgagcttc atttaaggct
    13921 tgtcgaataa tcttttcatc aatttcaaat ggcagttgca ttaatactgc taatgcggtg
    13981 ccggcgtttg gaatcggaat aagcgggatt ggtaaatcgg taaaggattt ttcttcagaa
    14041 taccaatgaa acagattatt cttaatttca aactgccagt ctttaccccg gtaaaaagcg
    14101 tgacaattta acgaatcagc aatctgttta atcgaatgag ggcaatcagg ctcgccgatg
    14161 acaaccggaa tattttcacg gaaaatgccg gctttctcac gcccgatgtc ttcacggtta
    14221 tcgcctaaaa atgcaacgtg gtcgatatca atcgagataa tcacggcaag gcttggatca
    14281 ataatattag tggcatctaa tcgcccacct aatccgactt ctaaaatcac aatatcgagc
    14341 tgattttgtt tgaatagctc aaatgcagac agcgtactaa actcaaaata agtgagtgaa
    14401 gcggtctttt ttgcattaat ttttgcaaat gcttggacgt ggtcggcatc aggtaatact
    14461 tcgccgttaa ttcgcacccg ttcattatag tgaattaagt gcggtgaaga gtaaacacca
    14521 acccgaaatc cggcttttaa taaggtaact tctaacaaac ggcaggtcga acccttgccg
    14581 ttagtaccgg caacggtaat cacataaggg gcaggcttga gtaaatccag ctctgttgcg
    14641 accttacgaa tacgatctaa gcccatatca atcggtttag aatgggcttg ttctaaatag
    14701 gaaagccacg tttccaaaga atccgtggct ttaggtatgc ttaatgtatt cattcagata
    14761 ttttattctg cgttttctac aaccaattcc gccactttaa acggcgttgg ttgattggtt
    14821 aattttgcac aaagacggga aagggtatca cgcatctctt tacgatgcac gatcatatca
    14881 actgccccgt gttctaataa gaactcggca cgttggaaac cttccggcag tttttcacgt
    14941 acggtttgct caattacacg aggaccagca aagccgatta gggcttttgg ctcagcaata
    15001 ttcacatcgc ccagcattgc caaacttgcg gaaaccccac ctaaagttgg gtcggttaat
    15061 acagaaataa acggtacgcc ctgctctttc attttggcta aaatcgcact ggtttttgcc
    15121 atttgcatta aagagaataa cgcctcttgc atacgagccc cgcccgatgc cgaaaaacag
    15181 ataaacggaa ttttttcagc taaagctttt tccgcagctt tcacaaattt tgcacctact
    15241 acagacccca ttgaaccgcc cataaactca aagttaaagg aggccgtaac caccggcata
    15301 ttatgcaatg taccggcaag cacgataaaa gaatctttct caccggtttg tttttgcgcg
    15361 gcagttaaac gatctttata tttctttaaa tctttaaatt tcaacacatc ttccggctct
    15421 aagtcggcag cgatttcgac cgcagaatct ttatctaaca aattcaataa acgggtgcgg
    15481 gcatcaatac gcatatgatg atcgcatttt ggacaaacct gttggttgcg ttgtaattct
    15541 tcgctataga gaacttgttc acaacttgtg cattttgtcc atacaccttc cggcactttt
    15601 gattttgcat tgcttgatga tgaagagtct ctacctaaaa ttctgtctaa ccagctcatt
    15661 attattcctt ttggattgag ttgttgggtt cactaaatgg ttgctattaa agcataattt
    15721 atcggttttt gatatgtttt cttgacatat cagatcacta actatgtgta taagttcgat
    15781 aaaaaaacgc aatcagaaga atgattaaca tcaccacaat ttgaattaag cgttttttgg
    15841 ttaatttttc cgctgccatt gctctgctca tacttaataa atttccgcat tataagcgaa
    15901 aaagcacggg ctatgtagaa tttgcaaaat tttgatcaaa aataaccgct tgtaaaaagg
    15961 aaatactatg gcaaccattg aacaatttct tgaggttgta aaccaacttc gtcaccctga
    16021 acacggctgc ccgtgggatc tcaaacagaa ttttgacacg atgttcccca cttattggaa
    16081 gaaacctacg aagtagcgga agcgattcac acccaagatc gcactgcctt gcgtgaagag
    16141 ttaggcgatt tattactgca agtggtattt ttaagccaat tagcgaaaga ggaaggcagt
    16201 ttcacttttg atgatgtagt aacggatatt cacgataaac tgatttaccg ccaccctcac
    16261 gtttttggtg atgtgaaagc tactaacagc gaagaggcct tacaaagttg ggaagcacaa
    16321 aaagcgaatg atgcaaaaca ccgtagccaa gattctattt ttagatgatt taccttttgc
    16381 tttgcctgct cttacccgtg caaataagct acaaaaacgg tgtgcaaaag ttggattcga
    16441 ttgggataac cctcacgatg tgctggcaaa agtcgaagaa gaactcgatg aagtcaaagc
    16501 agaaatcgca caatatccgg ctcgctccat cgagcttgct gaagaattag gcgatctctt
    16561 gtttgcgatt gtaaatttat gccgccatta tcataccgat gccgaggaaa ttttacgcaa
    16621 tgcaaatcta aaatttgaac atcgctttcg aaaagttgaa aaatctgtga aaaaatcggg
    16681 aagaactgta aaagaatgta aattagaaga actagatgta atttggcaca aaataaaagt
    16741 ggtaaaata
//
LOCUS       DANMGB010000045        16555 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.045, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000045 DANMGB010000000
VERSION     DANMGB010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16555
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.045"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            231..527
                     /locus_tag="PXG19_001058"
     CDS             231..527
                     /locus_tag="PXG19_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6066365.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            517..933
                     /locus_tag="PXG19_001059"
     CDS             517..933
                     /locus_tag="PXG19_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL6066366.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            933..2591
                     /locus_tag="PXG19_001060"
     CDS             933..2591
                     /locus_tag="PXG19_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL6066367.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2677..3324
                     /locus_tag="PXG19_001061"
     CDS             2677..3324
                     /locus_tag="PXG19_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL6066368.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(3308..4246)
                     /gene="ttcA"
                     /locus_tag="PXG19_001062"
     CDS             complement(3308..4246)
                     /gene="ttcA"
                     /locus_tag="PXG19_001062"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL6066369.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4309..5022)
                     /gene="ubiG"
                     /locus_tag="PXG19_001063"
     CDS             complement(4309..5022)
                     /gene="ubiG"
                     /locus_tag="PXG19_001063"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL6066370.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5087..5467
                     /locus_tag="PXG19_001064"
     CDS             5087..5467
                     /locus_tag="PXG19_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL6066371.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5564..8260
                     /gene="gyrA"
                     /locus_tag="PXG19_001065"
     CDS             5564..8260
                     /gene="gyrA"
                     /locus_tag="PXG19_001065"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL6066372.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8355..10319
                     /locus_tag="PXG19_001066"
     CDS             8355..10319
                     /locus_tag="PXG19_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066373.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10401..11159
                     /gene="tcdA"
                     /locus_tag="PXG19_001067"
     CDS             10401..11159
                     /gene="tcdA"
                     /locus_tag="PXG19_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL6066374.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11206..12573
                     /locus_tag="PXG19_001068"
     CDS             11206..12573
                     /locus_tag="PXG19_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL6066375.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12593..14140
                     /locus_tag="PXG19_001069"
     CDS             12593..14140
                     /locus_tag="PXG19_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL6066376.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14363..15397
                     /gene="metN"
                     /locus_tag="PXG19_001070"
     CDS             14363..15397
                     /gene="metN"
                     /locus_tag="PXG19_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL6066377.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15387..16064
                     /locus_tag="PXG19_001071"
     CDS             15387..16064
                     /locus_tag="PXG19_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066378.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16087..>16555
                     /gene="metQ"
                     /locus_tag="PXG19_001072"
     CDS             16087..>16555
                     /gene="metQ"
                     /locus_tag="PXG19_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter membrane-anchored
                     lipoprotein MetQ"
                     /protein_id="HDL6066379.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALIL"
BASE COUNT         4788 a         3351 c         3972 g         4444 t
ORIGIN      
        1 ctcttttgtt caaggcaagt atggatacct gaccgcaggc ctggagatag aacctacata
       61 taatatgctc tactacatta agccataaaa aatagaaaat caagtgtttg ttcaagtttt
      121 tatgttattg aatttacaat aactacaaaa atttatctta attggctcga ttgattttta
      181 cacaaaacat agctaacata tccaaaatca ctcacattag gagcttaaaa atgacagcga
      241 ttactatccc tcaatttgaa gaggtgactt ctaagcaatt tcaatctgag ttcggcagaa
      301 ttgttgatat cgtaaaaggc aaaacccctg tggcgattac ccaatatggc agaccgacaa
      361 tggtgctttt tccttacgat caagcggttg aagctcggcg attattagca aaacagcgtt
      421 tgcttgaaat gcttgcagag cgagataaga atccgccggc agctcttgca gaaatcacgc
      481 ttgaagagtt ggataaaatg attgatgagg aacgtaatgc actctgatta tttagtgatt
      541 gatacgaata ttttgattag tggtttattg ttcccaaaat caaatcccaa tttagcagtg
      601 aaaaaagcct tattaggcta taccatttgt gtctcgcaag cgacttttga cgaattttta
      661 gaagtctccg ctagaccgaa atttgctaaa tatttcagta ttcaggaaag ggaagaattt
      721 attgccaatt tgttggatgc agtaaagttt gtggaaatta aagaaacgat tacagattgc
      781 caagatccca aagataataa atttttagaa gtggcgatca gtgcaaaagc gaagtattta
      841 gtgacgggcg ataaaaaaga tctcctcagt atgaaccctt atcggaatgt tgaaattatt
      901 tccgtcagcg aatttttagc ggaaactcgc taatgaaacg gtttctcact ctttttcttc
      961 tccttttttc atctttttca ttagccgaaa cccaccaaat cggcattctc gctcagcgtg
     1021 gggaagccta cacccgcacc cattggcagc cttgggtgga ttggttaaat tcgcagtttc
     1081 ccaacgagcg gtttgagctg gttccattgg ggattaacga ggcgagccgc cgggcggagt
     1141 tggattttct gctgaccaat caagctcagt ttttctattt gagtaaccaa aatgtgcgat
     1201 ggcttgccac gctcaacagt ccgttttcgg caaatggtga gcaaggggcg gtgggcagta
     1261 gcatttgggt gcgtgccgac agccattatc agcagttaag cgatctgaaa aatcagacta
     1321 tcagtgcggt ggataacgat gctttcggcg gttttttgct tgggttgtat cagtttcatc
     1381 aagcaggaat gcggcaaaat cgggattttt cggtgcagtt tagcggtttt ccggtggaaa
     1441 atgcgttggc tttgctggcg gaaaaacagg tggaagcggc gattgtaccg gtctgtttgc
     1501 tggaagagtt ggagaaagag ggcaagttca agcggtcgga ttttcgctta attttgcaaa
     1561 acccacaggc gcagggttgc cttgccagca cgccgttgtt gccgaactgg tcgctggcgg
     1621 caatggaaaa tgtgccaaac gagctggcgg tacagcttgc cacacgcttg ctaaacagcc
     1681 acaatcccga cctaccccgc tggacgttgc cgttttcttc cgcccaagcc gatcacattc
     1741 tgcgtgaact gtatcgccac ccgcaacaaa aaagcctgtg ggcaacggtg ctggattggg
     1801 ttcgtctcaa taaattcggc ttgttggcgg tggtgttgtt cattttgctc aaccttgtcg
     1861 ccctgcgtta tcaggtctat cgcaaaagca aggcgttaca gcaggcacac tgcaaaatgc
     1921 agcagtatca gcaggaactg acccgagccg accgccttgc tttgttgggc gagatgacaa
     1981 ccggttttgc tcacgaactg aaacagccgt tgtcggcggt gcgaatgtac gccgaggggc
     2041 tgaaaagcca aaacagcgat ccttatcaac agcggatttt ggataagctg attgcgcagg
     2101 tagatcgggc agtgaaaacg atgcagagca ttcgggactg ggcgcaaaac cgcccgagtg
     2161 gtgaaccgca agcggtcatt ttgaaccaat tgattactaa tgtgatcgag tttgtggcgg
     2221 tggaaaatcg ccagaatgca caaatctcgc tgattgccga ccgcactttt cggcttaatt
     2281 tacacgccac ggtactggaa caagtactga cgaactgcct gctcaacgcc ctgcaagccg
     2341 gtgcaagcga gatatcggtg cggttacaag cggtcgaaaa cgggctggaa attgcaatcg
     2401 aagacaacgg cggcggtttt tcccctgccc agcttgaatt tccgtttgtg ccatttcgca
     2461 ccgacaaacc acacggctta gggctaggct tggtgctatg ccaacggctg atgcaatcgc
     2521 tcaacggacg gattgtattg gcgaacgggg agaacggggc gaaggtagtg cttttactcc
     2581 ctcaaatata aatgtagggg caggtcctgt gcctgcccgt aaatcctatc aaattcaggg
     2641 cgggcacagg acccgcccct acggaaaaaa gaaaaaatga ttattcacat tcttgatgac
     2701 gaagaaagca ttttagacgc tatgtcgttc ctgcttgccc cgcttggggt ggaaatccaa
     2761 acgtggcaat ccagcctaga ttttttggca caggcggatt tacaccggca aggcgtgctg
     2821 ttactagata ttcgaatgcc gctgccagac gggcaacagg ttcatcaaca actgcgagag
     2881 gcacaatcga ccctggcggt ggtgattatg accgcccacg gtgatgtgcc gatggcagtc
     2941 gctgaattga aaaaaggcgc agtggatttt ctgcaaaagc cggcaagttt tgaacagcta
     3001 aaacaggcga ttgcacaggc ggaaaaagta agtgaaaaag cggtgaaaat tcgtgaaatt
     3061 tcgcaaaatt acgccaaatt gacggaaaaa gagcgtaacc ttgtgccact gattatgcaa
     3121 ggtttcacca ataaacagat cgcagataaa ttagcgattt cagtgcgtac ggtggaagta
     3181 catcgagcca atgtgatgga aaaaatgcag gcggagagtt tggcggggct ggtgcagatg
     3241 atcggggagt tacaatataa aggtagcgga aattgctctg ctacctttag tttcgacttt
     3301 tgccgtatta atttacttct ttaaactgaa tcattcccgc ttcggcaaaa ttgttatcgt
     3361 catcttcgta taagaaggtt ttggcttcaa ttttgacatc atcaaaagcg gtgtcgcctt
     3421 ctatgccttc aatggtttga ccgtgtttaa tccctttaaa atcaaacaat ttcggatcgc
     3481 ataagtggga tggcacgata tcttgcaaag cactgaacat tgtttctaaa cgccccgggt
     3541 attggcgatc ccaagtattc agcatttctt tcaccacttg gcgttgtaaa ttaggctgag
     3601 aaccacacag attacacgga ataatcggga actgcttggc ttcggcatat ttgataatgt
     3661 ctttttcttt acaataggcg agtgggcgga tcacaatttg cttgccgtca tcagagatca
     3721 gtttaggtgg catacttttc attttgccgc cgtagaacat atttaagaat aaagtcgcca
     3781 gcatatcgtc acggtgatgc cctaatgcaa ttttggttgc acccaattcg gtggcggtgc
     3841 ggtataaaat cccacggcga agtcgtgagc aaagtgaaca ggtggttttg ccctccggaa
     3901 ttttctcttt tacgatgccg taggtgtttt cttccacaat tttgtattcc acgccaatgc
     3961 tttctaaata gcgaggcaat acctcttccg gaaatcccgg ttgcttttgg tctaaattga
     4021 ccgctaccac actaaaattc accggtgcac tttgctgtaa attgagcaaa atatctaaca
     4081 gcgtatagct gtctttaccg ccggaaaggc agaccattac acggtcgccc tcttcaatca
     4141 taccaaaatc ggcaatggca ttaccgacat tacggcgtaa acgtttttgt aacttgttga
     4201 aattataagt aattttttta tcagattttt gaatatcgtc tgtcataata gttgtactag
     4261 gcttagaaat tagcggtgta tagtaaagat ttcgcactat tttgcaagtt aattattcgg
     4321 cttcagcgta gcgatatagt tacaactcac atcattattg agccaaaatt tttcggttaa
     4381 tgggttgaaa tggtagcctc tcatctcttg gcaacgtaaa tcagcctgat cgcaccaagc
     4441 taacaattcg gcaggcttga tgaatttttc aaattcgtgc gtgccttttg gcaacatttt
     4501 cagcacatat tccgccccga taattaccaa catataggct ttaaaagtac ggttgatggt
     4561 agagaaaaac agcacgccgt caggtttgag cagggcttta cagctttgaa tgatagaaag
     4621 cggatcggga acgtgttcca gcatttccat acaagtaatc acatcgaatt tttcttgatt
     4681 acaagcggtc atttttgcta aaaaattttc aatcgtggtt tgttggtaat caatctctaa
     4741 cccactttct ttggcgtgct gctttgccac ttcaagcggt tgagaggtca tatcgatgcc
     4801 ggtaacaatc gctccctgtt ttgccattgc ctcacttaaa ataccgccac cacagccgac
     4861 atctaacacc tttttgccaa ataaaccgtt cgatttttct aaaatatagg ctaaacgcag
     4921 tggattaagc agatgaatcg gcttgaaact gccgtttgga tcccaccagg ttttagccat
     4981 attttcaaat tttgtgattt cttgctgatc gacgttttgc ataaactgtt cctatggtaa
     5041 atttagggca ttactataac gcatttagcc taaaaggaaa atcagaatga cccgaattaa
     5101 ccttgttccg ccaacggaat tatgcgatca acatctgctt gccgaacatc gtgaacttac
     5161 tcggattccg aatgcggtag cgaaaggcaa atttagccta aaaggacagc cagaagatta
     5221 caaactgggc gagggacacg ttcggttttt cttcaataaa ctcacgtttt tgaaaaagcg
     5281 ttacgatgcg ttacacgagg aatgtttagc aagaggtttt aaggtgcaat atttctgggc
     5341 ggaacattta ccacaagatc cctctctctg gctagattat cagccgactg aaaccgctct
     5401 gactgtaaat cgggagcgaa ttgcattaag aatgccggca aatccacgtt ttagcgaaag
     5461 aaaatgaccg cttgtacgcc tttttgttgc tttttatgct ataatctcgc caattttttc
     5521 gccttattta aggctctttt actaataaaa ttaggaaatt tcaatgagcg aattagccaa
     5581 agatattatt cccgtaagta ttgaggacga attaaaaacc tcttaccttg actatgcgat
     5641 gtcggtgatt gttgggcgtg ccttgcctga tgtacgagac ggtttaaagc cggtacaccg
     5701 ccgagtgctt ttttcaatgg atcaaaacag caacacctat aataagccgc acgttaaatc
     5761 tgcccgtgtg gtcggtgatg tgatcggtaa atatcaccca cacggtgact ctgcggtgta
     5821 tgacactatt gtgcgtatgg ctcaaccgtt ctcactacgt tatatgttgg tggacgggca
     5881 aggtaacttt ggttctattg atggcgatgc accggcagca atgcgttata ccgaagtgcg
     5941 tatgcagaaa attacgcagg aattattaac cgatctcgat aaagaaacgg tggatttctc
     6001 accgaactat gacggcaaag agatgattcc tgatgtattg ccaaccaaaa ttccggctct
     6061 gttagtcaat ggttcttcag ggattgcggt cggtatggca accaatattc cacctcataa
     6121 tttaggcgaa gtattagatg gttgcttggc gtatattgaa aatgaacaga ttagtgttga
     6181 agagctaatg cgttatatcc cggggccgga tttcccgacc ggggcgatta tcaacggtcg
     6241 taaagggatt gaagaggctt accgcaccgg tcgtggcaag gtgtatgtgc gcgcgaaagc
     6301 cagcgtggaa acaactgata aagggcgtga gcaaattgtt gtaaccgaac tgccatacca
     6361 agtgaataag gcaaaattaa ttgaaaaaat tgccgagctg gttaaagaga agaaaatcga
     6421 aggcatcagc aaaattgatg actattccga taaaaaaggg atttcgattg ttattgaagt
     6481 caagcgtgat gcagtgggtg aagtggtgtt aaaccacctt tattctttaa cccaaatgca
     6541 ggtcacgttt ggtatcaata tggtggcgtt agataatggg cagccaaaag tgctgaactt
     6601 acgccagatc atcgaagcct ttgttaaaca ccgtcgtgaa gtggtcacac gccgtacgat
     6661 ttttgaattg cgtaaagccc gtgaacgtgc ccatatttta gaaggtttgg cgattgcgtt
     6721 agcgaatatc gacccggtaa ttgaattaat tcgagcctca aaaaccgcag aagaagcccg
     6781 tgaaggctta ttggctcgcc cttgggcatt aggcaatgtt gcaccaatgt tagaggctgc
     6841 tggtgttggt gcttcccgac cggaagattt acctgaacac ttaggagtgc gtgatggcga
     6901 atactattta tctgaagctc aagccagagc gattttagag ctacgcttac accgcttaac
     6961 cggtttagaa cacgagaaaa tcgttgaaga atacaaagaa ctcttaactg aaattggcga
     7021 attaatccac attttaacca gcccagaacg cttaatggaa gtgatccgtg aagagttaga
     7081 acgtgtaaaa accgatttta atgatgaacg ccgtactgaa attaccgcag cctctggcga
     7141 catcaacatt gaagacttaa tcgcacaaga agatgtggtg gttacgcttt ctcacgccgg
     7201 ctatgtgaaa tatcagccgt tatccgacta cgaagcacaa cgccgtggcg gtaaaggtaa
     7261 gtcggcaacc aagatgaaag aagatgattt catcgaaaaa ctcttggtgg caaacaccca
     7321 cgacaccatt ctttgcttct caagccgtgg gcgtttatat caattaaaag tgtatcaatt
     7381 accgcaagca agccgtgggg caagaggcac gccgattgtg aatattctgc cgttagtgaa
     7441 agaagaaaac gaacgtatta ccgcgattct accgattcca aacggtgaat ttagtgccga
     7501 taagtttatc tttatggcaa cagctagcgg tgtagtgaaa aaagtttccc ttgatgcctt
     7561 tagcaacgtg cgtgcaagcg gtctgattgc gttaaaactt cgtgaaggcg atgagctgat
     7621 cggggtagat attactgatg gtaacagcga aattatgttg ttctcggcac aagggcgagt
     7681 agttcgcttt gccgaaacag cagttcgtgc gatgggacgt accgccaccg gcgtacgagg
     7741 tattaaactt tctaccaccg aaatttcaag cgaagaaatt gaagaagctg aaattattga
     7801 aactgacaat gaagaggcag aagattcctc cagcgtcagc cttgataaag accgtgtggt
     7861 ttctttagtg attcctcgca ccgaaggcga tattttaacc gtcacccaaa acggctacgg
     7921 taaacgtacg gtgattagcg aatatccggt gaaatcccga gcaaccaaag gggtcgtttc
     7981 gattaaagtg aatgaacgaa acggcaaagt ggttgcggca gttcaagtag aggaaaccga
     8041 ccaaattatg ttgattaccg atgccggcac gctggttcgc acccgagtgg cagaagtcag
     8101 cctcgttgga cgaaacaccc aaggcgtacg tattattcgc accgcagaag acgaacaagt
     8161 tgttagcctt gaacgagtct gcgagcctga agacgatgaa aatgaaagcc tagacgcatt
     8221 agaaaatgcc gaaacagcag aaacatcaac tgaagaataa tcttaactaa acaagcggtc
     8281 gaattttcac aattttttgc aaaaatagaa ggaaattcga ccgtttttgg atcatacagt
     8341 agataataaa aactatggca cttatcaatc tttccaacgc ctatttaggc tttggcgatc
     8401 atcctttatt ggatcatact gaattacata tcgaacccgg cgagcgggtt tgtttggtgg
     8461 ggcgtaacgg ggcgggtaaa tcgaccctga tgaaaattct ggcgggcgaa gttcagcttg
     8521 atgacggcaa gttggtattt gaaaaagaca ttgtcgttac acgtcttgaa caagatccgc
     8581 cccgccatat tgaagaaacg gtgttcgatt atgtggcgga ggggattgcc catcttgccg
     8641 acttattgaa gcaatatcac cacatttccc tgcaaatgca gaccgattac agcgatgaac
     8701 tgctcgccaa actttcagcg gtgcaatcgc aattagaaca cgctaacggt tggcagtttg
     8761 aaaaccgcat tcaagacacc ttgaaactgc tggaactcgc ccccgacaaa cgcctgtgcg
     8821 aactctcagg cggttgggta cgccgtgcgg cattggctcg ggcgttggtt gccgatcctg
     8881 atgtattgct gttggacgaa ccgaccaacc acctcgacat tgaggcgatt gcgtggctgg
     8941 aaaatctgtt attggatttc aaaggcagta ttatttttat ctcgcacgac cgtgccttta
     9001 tccgcaaaat ggcgactcgg attgtggatt tagatcgagg caaattggtt tcctacccaa
     9061 gcaattacga taaatacttg gaagaaaaag ccgaggatct gcgagtagaa gcgttgcaaa
     9121 atgagctgtt cgacaaaaaa ctcgcccaag aagaagtctg gatccgtcaa gggattaagg
     9181 caagacgcac ccgaaacgaa gggcgtgtgc gagcgttgaa agcgttgcgt gaagagcgta
     9241 gaaaccgccg agaggtacaa ggcacggcga aaattcagat cgacaacacc gcacgcagcg
     9301 gcaaaattgt gtttgaagtg gaaaatgccg gctatgaaat cggcggcaga accctgctga
     9361 aaaatttcag caccaccatt ttgcgtggcg ataaaattgc cctgattgga gcgaacggga
     9421 tcggcaaaac cacgctgatc aagctgttac ttggcgaaat tcagccgaca tctggttcag
     9481 tgcgttgtgg cacaaaattg gaagtggcgt acttcgacca ataccgagtc gatcttgacc
     9541 ctgaaaaaac cgtgatggac aacgtggcag acggcaagca agatgtagaa gtaaacgggg
     9601 tgaaacgcca cgttcttggc tatctgcaag acttcctgtt cccgccaaaa cgggcgatga
     9661 caccggtgaa agccctctcg ggtggtgaac gcaactgctt gttgctggca aaactgttac
     9721 tcaaaccgaa caacttgctg attttggacg aaccgaccaa cgatttggac gtggaaaccc
     9781 tcgaactgct ggaagagatg ctcaccgact atcaaggcac cctgattatt gtgagccacg
     9841 accgtcaatt tgtggataat accgtaaccg aatgctactt cttcgagggc gaaggcgtgg
     9901 tgaataaata tgtcggcggc tatttcgatg ccaaacaaca gcaggaaaat tacttcgccg
     9961 ccactgccga caagcggtta aattcgagta aaaatttgca aaaaatagag gaaaaagcac
    10021 cgcttgcgga gcaagagaaa cagaaagccg atcaggaaaa aacgaaagca gagccgacga
    10081 agaaaaccaa actttcctac aaagaacagc gtgaactgga cgagttaccg gctaaaatgg
    10141 aacagcttga agccgacatt gaagccctgc aagccgaagt aaatagtgcc gaattcttcg
    10201 ccaaagatcc aagctacacc aacgcccagc tacaaaaact tgccgatacc gaagccgcgt
    10261 tagagcaagc ctttgagcgg tgggaagcgt tggaaaatat taaaaacggg aatatctaat
    10321 gtaggggcga atgattattc gcccttgatg gataaaatga ttgggcgaaa aatttttcgc
    10381 ccctacaaat gtgaagcaaa atgacagaaa gattagataa ctacgaacaa cgttttggtg
    10441 gcattggtcg cctttatacg ccggaaggat tggagaaact acgccgttcg catatttgcg
    10501 tgattgggat tggcggggtt ggctcgtggg cagtggaggc attggctcgc tcaggtatcg
    10561 gtaagatcac gatgatcgat atggacgata tttgcgtgac caatatcaac cgccaaattc
    10621 acgcaatgag tggcacggtg gctcaactga aaaccgaagc gatgaaagag cggattgagc
    10681 ggatcaaccc tgaatgtgtg gtggaaatta ttgatgattt cttaacgcag gataatctcg
    10741 cagactacct caatcgagga tatgactatg tgatcgatgc gattgacagt ttgcgggtaa
    10801 aagcggcgat gattgcgttt tgtaaacgca ataagatcaa aattatcacc accggcgggg
    10861 cgggcgggca gaccgatccg accaaaattc aaattaccga tttaagcaaa acggtgcaag
    10921 atccgttggc ggcaagggtt cgtagcctgt tgcgtaaaga gtacggtttc agcaataaaa
    10981 acaaattcgg cgtggagtgc gtttcttcga ctcagcaact gattttccca caaatgggtg
    11041 aggcctgtga ggtgtcggca acaatgaact gtgccaacgg ctttggagcg gtgacaatgg
    11101 tgacggcaac gttcggcttt tttgcggtga gtcgggtgat tgataaacta ttaaaataac
    11161 aagcggtcat attaaatgaa ttttttgcaa atcaaggagt aaataatggc aatacatcga
    11221 gtcaacccga aagggagtat ggaacagctt tcccatttgg aaatggagtt gttggcaaag
    11281 aatacgcagg gtaatttgca tcaactttat cgtaattgct ctttggcggt gctaaattcc
    11341 ggtgtgcata ccgatgacag ccgagcgttg ttaagccaat accctgattt tgaaatccgc
    11401 ttattaaccc gtgaaaaagg cgtgtcgctt gaattgcata atccacccga aactgcgttt
    11461 gttgacggca agatgatttt gaatattcaa tatcaccttt ttgcggtgct gcgggatatt
    11521 gtgtttgtga atgcgttaaa aaatgcgatt agaccgcttg aagagacttc tttagaagcc
    11581 ttaaccacga ataccgtatt ttcgattttg cggaatgcga aagcgattga aatgaatacc
    11641 gacccaaatt tggtggtgtg ctggggaggg cattcgatta atgaaaccga ataccaatat
    11701 tgccgtgccg tcgggcaaga gtttggcttg cgtgagctga atattgtgac cggttgcgga
    11761 gccggtgtga tggaagcccc gatgaaagga gcggctatcg gacacgccaa tcaacgttat
    11821 aaaaacgggc gttttatcgg cattaccgag ccgtctatta ttgcctccga gccgccaaac
    11881 ccgattgtga atgaattggt aattatgccg gatattgaaa aacggttgga agcctttgtg
    11941 cgtttagggc acgccattgt ggttttcccg ggcgggccgg gaacgctgga agagttgctg
    12001 tatattatcg gtattaagtt aaacccggct aaccatgctc agcaattacc actgatttta
    12061 accgccccga aagaatcggc agactatttc tatgccatcg atcaatttat tggcgaaact
    12121 ttaggcgaag aagctcgcag tttgtatgaa attattattg atgactcggt gttggtggct
    12181 cgtaaagtca agcaagcgat gattgaggta aaaagcagcc gttatgaaag tggcgatgct
    12241 tataatttca actggtcgtt aaaaattgag gaagatttta ttacgccatt tattccaacc
    12301 cacgaaaata tggcaaacct gaatttaagt ttagcacagc caaaagagca gctggctgcg
    12361 aatttaagac gggcattttc agggattgtt gcaggtaata ttaagccgga gacctccgat
    12421 ttaattgaga aatatggggt gtttaaatta cacggcgatc gtaaattaat ggagcatata
    12481 gataaactgt tggagcgttt tgtggttcaa caccgtatga aaattccaac gggtgaggcg
    12541 taccaacctt gctatgaaat tgtaaaaggg taatgctaac aaggggtaag gtatgtattt
    12601 aaagcatatt gaaatcagtg gctttcgtgg tattaaccat ttatcgctcc agctacgacc
    12661 aaatatggta ttgattggcg aaaatgcgtg ggggaaatcc agtctgattg atgcattaag
    12721 cctgattttt aaccttgagc aggcgttgta tcaatttcag ttcaaagatt tccatattca
    12781 atacaccgat acccccaacc aagtgcggga cattcaactg gtgtttacct tttgtgaaga
    12841 gcatcagcac gatttagcgg tgcaatttcc cgcttatttg gcacaagccg cgttttatat
    12901 tgataatcac cgctgtgttt cgcttgccgt aaccggaaaa ttacacggag agcagattag
    12961 caccgactat caatttgtgg atcaaagcct aaaaccgatc cagatagaac aagcggaaaa
    13021 cgccattcgg cagtttattt accatcaccc tgtttatcgc ctgcgtgatg caaggctcaa
    13081 taacagggtg cataatgaat tattacttaa aggatcgtct caacttgaag acgattttca
    13141 acgtgaatta aacgccctct cttcgctact gaaatactat tttctaacca gccaaagtcg
    13201 ctatttgatc aaaaccagta tgcaagacac cgcattgtgg tgggaaaaag taaaatccct
    13261 ctgtttacgc ctaaaacagc agccggaatt ggtcgaatct gctcagcagc atatttctac
    13321 tctatttttg tttaatccta gatctacagt aatagaaaag ccgattattt tatttgaaga
    13381 tctgaatgct caactacacc ctcgaatgat tgcgattttt tgggaactgc tcggtttttt
    13441 acccagccaa cggatcacca ctactaattc tattgaattg ttatcgcaag tgcctctgcg
    13501 tgaaatctgc cgtttggtgc gtcatcacga tcatacccaa gcctattggc ttgaacgcca
    13561 cagtttaggc aaggaagatt tgcgaaaatt aacctttcat attcaccata atcgtggctt
    13621 ggcactgttt gctaaagcgt ggattttggt tgagggggaa acggaggttt ggattttgca
    13681 agagctggcg agattattag atattcattt ggaaatggaa gggatcaaaa tcgttgaatt
    13741 tgctcagtgt ggcttacgtc cgttaattaa atacgccaga gcaatgggga tcgaatggta
    13801 tgtgctgact gacggtgacg attccggcaa acgttatgca gatacggtaa aaagtatgga
    13861 agaggatttt gctcaccggc tcacgatgtt gccacaaaaa gatatcgaac attttttcta
    13921 caaagcaggc ttgcggaatg tgtttataca gcttgcaaat tggcgttcac aagaaaaata
    13981 tccggtgtcc tacatcatta aacgagcgat tcaacgaagc tcaaagcctg atttagccat
    14041 tgcattagcc aatgagatgg ggcaacgggg agagcattca attccaactt tatttaaaca
    14101 attatttgca gatgtgctgg cattgataaa caaagtatag aatacaagcg gttaaatttg
    14161 acaaaaaatt gccaattttg accgcttgtt tgcttgtgat gaaaaccaat catacaaaac
    14221 tctaatttat ttcaagtgca agctattatt ttatgcgtta tgcttatttg gaataaaaaa
    14281 atcgggttag ttgattgaca tagcattcta gacgtctaaa ataaccaaaa ataatagtta
    14341 attgaatgtg gataaataga aaatgattca gctgaaaaat atcagcaaac aatttgaggt
    14401 aaagggcaaa aaaattaccg ctctggataa tgtaaaccta gaagtaccaa gaggcactat
    14461 ttatggtgtc attggggcat caggggcagg aaaaagtacc ttaattcgct gtgtaaattt
    14521 attagaacgc ccaacaatcg ggcaagtgat tgtcgatggg caagatttaa cggcaatgtc
    14581 ggataaagag ttgattcacg ctcgccgtaa tattgcaatg attttccaac attttaattt
    14641 gctttcatca caaactgtat ttgaaaacgt ggcgttatcg ttgcgtttaa gcaatacgcc
    14701 aaaagagcaa gttgagaaga aagtcaatga gctgttggat ttagtggggt taacagatcg
    14761 taaagatgtt taccctgcaa atctttccgg tgggcagaaa cagcgtgtag cgattgctcg
    14821 tgcgttagcc agcgatccac acgttttgtt gtgtgatgaa gcgaccagtg cgttagatcc
    14881 ggcgactacg caatccattt tgcagctatt aaaagatatt aataaacgtc ttggtttgac
    14941 gattttatta atcactcacg aaatggaagt ggtaaaacgc atttgtgacc gagtagcagt
    15001 gattgataaa gggcagttga ttgaatctgg ctcggtaagt gaaattttct cgaatccgaa
    15061 aaccgaatta gctcagaaat ttattcaatc gactttccat tttgaattac cgcaagaata
    15121 taccgagcag ctttcaagtt cgccgactga acatagtaag ccgattatta aatttgagtt
    15181 taccggacgt tcggtggatg cacctttgct ttcaatggca tcgaagaaat tcggcattga
    15241 ttttagtatt ttgatgtcgc aaattgatta tgcaggcggg gtcaaatttg gatttgtaat
    15301 tgcagaagtg agtggtaatc cggattccat tgcagaggca aaattttatt taattgataa
    15361 caatgtaaaa gtagaggtgt taggctatgt gggctgattt tatgcaggag atgacgccac
    15421 agatgtggag cttagtatgg gaatctactt ttgaaaccgt ttatatgggc tttgtggcaa
    15481 cggcattggc ggtagtcatc ggtttaccga ttggtttctt ggcgttttta accggtaaag
    15541 gcgaaatttt agaaaatccg agattacacc aagtgttaga tgtcgttatt aacatcgggc
    15601 gttcgattcc gttcattatt ttattgatta ttttgttgcc atttactcgc ttagttgtgg
    15661 gcacaacatt aggcacaacg gcagcgattg ttcctttaag tgtttcggcc attccgtttt
    15721 ttgcccgttt aacttcaaat gcgttgcttg aaattccgtc cggtttaaca gaagcggcaa
    15781 aatcaatggg agcaacaaat tggcaggtag tgacaaaatt ttatttaccg gagtcattac
    15841 cgattttgat taatggcatt acgctaacgc tggttgcttt aattggctac tcagcaatgg
    15901 cgggggctgt tggtggcggc ggtttaggca atttagcgat tagctatggc gaacaccgta
    15961 atatggtgta tgtgaaatgg attgctacca ttattattgt tgcgattgtg atgattagcc
    16021 aaaaattggg tgatcattta gcaaaacgtt acgatcatcg ttaattttat ttaaaaagag
    16081 gtttctatga gtttcaagaa aattttaggc gttgcattgg tttctgcatt agcattaacc
    16141 gcttgtaaag aagagaaaaa ggcagaatct accgctgctc cggcagctca agctccggct
    16201 aaaatcaaag taggggtaat gtcaggccct gagcataccg ttgcagaacg tgcagcacag
    16261 attgcaaaag aaaaatatgg tttagaagtt gagttcgttt tatttaacga ctacgcttta
    16321 ccgaatactg cagtaagtaa aggtgattta gatgcaaacg cattccaaca caaaccatat
    16381 ttagataaag acagccaatc aaaaggttta aacaacttag tgattgtggg taacaccttt
    16441 gtttatccgt tagcgggcta ctctaaaaaa gtgaaaaatg tgtctgagtt agcagaaggt
    16501 gcggtaattg cagtaccaaa tgatccttca aacttagctc gtgctttgat tttat
//
LOCUS       DANMGB010000046        16505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.046, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000046 DANMGB010000000
VERSION     DANMGB010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.046"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..895)
                     /locus_tag="PXG19_001073"
     CDS             complement(<1..895)
                     /locus_tag="PXG19_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066380.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXG19_001074"
     CDS             complement(895..1074)
                     /locus_tag="PXG19_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL6066381.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXG19_001075"
     CDS             complement(1075..1716)
                     /locus_tag="PXG19_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL6066382.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            complement(1713..2138)
                     /locus_tag="PXG19_001076"
     CDS             complement(1713..2138)
                     /locus_tag="PXG19_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6066383.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXG19_001077"
     CDS             complement(2138..2479)
                     /locus_tag="PXG19_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066384.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXG19_001078"
     CDS             complement(2527..3444)
                     /locus_tag="PXG19_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL6066385.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXG19_001079"
     CDS             complement(3444..4514)
                     /locus_tag="PXG19_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL6066386.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4773..5189)
                     /locus_tag="PXG19_001080"
     CDS             complement(4773..5189)
                     /locus_tag="PXG19_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6066387.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5340..6639)
                     /locus_tag="PXG19_001081"
                     /pseudo
     CDS             complement(5340..6639)
                     /locus_tag="PXG19_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6626..8251)
                     /locus_tag="PXG19_001082"
     CDS             complement(6626..8251)
                     /locus_tag="PXG19_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL6066388.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXG19_001083"
     CDS             complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXG19_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL6066389.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9949..10095)
                     /locus_tag="PXG19_001084"
     CDS             complement(9949..10095)
                     /locus_tag="PXG19_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066390.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10095..10595)
                     /locus_tag="PXG19_001085"
     CDS             complement(10095..10595)
                     /locus_tag="PXG19_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL6066391.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10603..10857)
                     /locus_tag="PXG19_001086"
     CDS             complement(10603..10857)
                     /locus_tag="PXG19_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066392.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10857..11114)
                     /locus_tag="PXG19_001087"
     CDS             complement(10857..11114)
                     /locus_tag="PXG19_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066393.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11107..11262)
                     /locus_tag="PXG19_001088"
     CDS             complement(11107..11262)
                     /locus_tag="PXG19_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066394.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11277..11636)
                     /locus_tag="PXG19_001089"
     CDS             complement(11277..11636)
                     /locus_tag="PXG19_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6066395.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11633..11878)
                     /locus_tag="PXG19_001090"
     CDS             complement(11633..11878)
                     /locus_tag="PXG19_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6066396.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11881..12414)
                     /locus_tag="PXG19_001091"
     CDS             complement(11881..12414)
                     /locus_tag="PXG19_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL6066397.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12500..12925)
                     /locus_tag="PXG19_001092"
     CDS             complement(12500..12925)
                     /locus_tag="PXG19_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL6066398.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12996..13211)
                     /locus_tag="PXG19_001093"
     CDS             complement(12996..13211)
                     /locus_tag="PXG19_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6066399.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13230..13622)
                     /locus_tag="PXG19_001094"
     CDS             complement(13230..13622)
                     /locus_tag="PXG19_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066400.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
     gene            complement(13748..14095)
                     /locus_tag="PXG19_001095"
     CDS             complement(13748..14095)
                     /locus_tag="PXG19_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066401.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
     gene            complement(14184..14609)
                     /locus_tag="PXG19_001096"
     CDS             complement(14184..14609)
                     /locus_tag="PXG19_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL6066402.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            complement(14593..15147)
                     /locus_tag="PXG19_001097"
     CDS             complement(14593..15147)
                     /locus_tag="PXG19_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066403.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(15147..15317)
                     /locus_tag="PXG19_001098"
     CDS             complement(15147..15317)
                     /locus_tag="PXG19_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066404.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            complement(15388..15963)
                     /locus_tag="PXG19_001099"
     CDS             complement(15388..15963)
                     /locus_tag="PXG19_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL6066405.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            complement(15986..16168)
                     /locus_tag="PXG19_001100"
     CDS             complement(15986..16168)
                     /locus_tag="PXG19_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066406.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(16235..16381)
                     /locus_tag="PXG19_001101"
     CDS             complement(16235..16381)
                     /locus_tag="PXG19_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL6066407.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
BASE COUNT         4339 a         4072 c         3085 g         5009 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 accatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaacaacc
     4621 gcttgtattc agcgaggaat gtaacccatt ttaaaacgct ttaaatccgt tttaaaaaat
     4681 tttaaaaaag ttggaatgat aaatcaccat aaaaaaaaca aaaacgccac agagagcgat
     4741 ttaggggcta tctgtggcga ttatcttatc gcttaatcca gcagtttttg ccagtaggct
     4801 tgcacatcgt ccaaaatatc ttgcctgtct tgcgaggtta attgtaaaaa aggtcgggct
     4861 tcaattttta ctttacgccc acgcccagcc ataccaccga attgatgaat agcagcataa
     4921 ggctcatttg tgccaacaat cgccgaatca ttattataat cagcagtaat gctgcccatt
     4981 aaattttccg tatcaactaa cggcgtgcct tgccgatgtt ttatacccag ccatttcggg
     5041 cgaccgccct catcaaaatt ggtcagtacc gccgattcca ttttgccggc aatattccgc
     5101 atcaagtctg ttttatttgc cgttttagca gcaatacggt taagcgtggc aataatttca
     5161 tcaatgccgt ggatttggat ttcaatcatt tttaaccttg caagttgatt tttaaaataa
     5221 acaggggtat attcctttta cggttattag aaaagcggtg ataatctccc tgccgcagcc
     5281 tatttgagat ggcaagtcct gctcaaatga ccgagagcgt gtgtaagtga ccgggagcct
     5341 tacctaataa ccgtattttt caacagcagc ttatccaatt ctttttgtcc aatctccctt
     5401 gttgatacca gaaataattc accaaactct tctaagtatt tcaccacaac aagaatacga
     5461 taatgctcaa agtttcgtat aaagctgaaa tttttgcctt cttgcaaaat atgattaggc
     5521 tgaaaaatta catcaggaat atttgcatac acatcaaacc caaaatcctg cccctcacgg
     5581 ctataaaact gcttaatcag tgtgtcatcc gaaagccata ccgtgccgac tttactgtcg
     5641 attaagcgtt gtgtttcctc acttaaccga ccagcagcaa atttaaagtt ttgattaagg
     5701 gcatttcgca ctttaaccat ctcatcaggc gagagttttt tcgccccatc tttggcaagt
     5761 gccacagcct cttctaactt gttaaacgcc tgcttaaatt caccaccgct catttctgct
     5821 ttggtaaatt ggtaagccag cttttcaggg tataaatcca aattcggctt ataggttaaa
     5881 cgccccacat tataatcaaa acctttatca gccaatcgca ccgtaccatc agccaattta
     5941 aagccaatgg tttcctcttg gttgcctaac ttatctttcg gtcgttttgc cttcactaaa
     6001 aacggctcgc tactgccgac ttcgtcaatc cctttacgct ttaaatcccg ctcacttaac
     6061 gcaatcacgg tacaacggca attaaagccg ttcggcggat aaaaagtcgc ccaaaacgga
     6121 tcgtcataac gataaatctt accctgtaat gcttggtgag cagggcgggt gcgttggtcg
     6181 cctaccgccg aatattgcca ataagggcga ttatccacat tatccatata ccgctgataa
     6241 cgagccgcag aataagcctg ttgcatattg gtacgataaa tcgtattcaa gcggcgaggc
     6301 gtgccgaaat gctcgccggt tttcgggtcg gcaagcagtt tgccatcaat gccacgacta
     6361 atcgtcgtgt ccatacaccc agcctttccg ttcaaattct gccgtaagcg ttttcttcca
     6421 ttcattaaag gatttcccct cacgccgtgc tttttccatc gactcataaa tatcacgggt
     6481 catttcaagg ctagtgagct tgctaatggt ggcggctcgc cccaatgcag aatcaaataa
     6541 ttcctgctta aacactttat tcgcaagcaa cttcttctgc cgtaaaaact caatcgcctg
     6601 cttaggctct agtccaatgg caaaattaac tttctgcatt cgcagcccct aataaatccg
     6661 ccaaaaataa cgcattcgct aaatagcggt cgtgttcttc actcactaaa tcagggtagg
     6721 ctgccgccaa tttttctgct gcctcatcat aagagctaca cgccattacc accgccaccg
     6781 cctttttcgt gatggggtca aattgggcgt taaaatccgg cacggaaaaa gcctcgtctg
     6841 ccaaatcatc taaggcatct tgctctttaa tgcccgtttt ggtttgggcc gacaaagcgt
     6901 gaaccttgcc cccacaaccg cattcgcaag cggtcatttt ttgcggaaaa tttgcggata
     6961 accccaccgc ttgtggcggg gcagaacgcc ctaacaccgc ttcattttct tgagcttcgg
     7021 gaataccgag tttatccatc gcccactgca ccggaatcgg cattccaata tccaccaatt
     7081 tcggcaagct ctcggcaaat aacgccaagt cggcaggctc tttggtatca aactcaaaac
     7141 tcggaatgcg ggttgggtcg atattgccaa aattaatttg cagaaacggc agaataattt
     7201 gttgggtaaa cgtctgcccc agctgtttca cgtccgacac caacaaatca cgccgcactt
     7261 cgttatgcac attgccgagt gcattggtag agcttttgcc gtctgcaccg ctggttaagg
     7321 tttgccccaa aatcaagcgg gcgatagact tctcacacca atccaccatt tgcaaaaacg
     7381 gattattgcc ggctgcaccg cctgcattag cggcgttatg caactcaata ctcatcgact
     7441 ccggcataat tccggcagcg ttgtgtccga tttccgctaa tgcacgttta agcgtttgtt
     7501 tttcgtttgg tgttgcccct gcaccgtatt taccaatgcg gataggcata ccatacagct
     7561 ccaaaaactc ggcaaagtcg tggatagagt agtgtttaaa catatacagc caagccagcg
     7621 agcggaataa attattgcgt gccgcctgtg tggagcggga tttatgcgta tgcaccaccc
     7681 agccaaattc tcgtaatggc tcaccttcgg tattttgtcg ggttttcagc aacagattgt
     7741 cgtgcttatc ccacttaaac cacgattgag gacggtggat aaaggcgttc ggataccaca
     7801 atttaccgtt aaacgcccat tcaatttcga gggcagcaaa accgtgtccc acagcgtcca
     7861 tacagtccat caccaaatct tcaaggttgc cgagctgata aaataactca tcaacctcat
     7921 cacgcagttt ttcttcctgc ggtgtggcat tgcgaggggc aacaatcgcc caatctacgc
     7981 ctaatgcggc acgcttacgg gtttggatat tggcaaaaat agagctgtcc cgctcctcaa
     8041 tatccataaa taattcgtgt tgagcggtaa tatcgccatt ctccgtatct tcaaaaatcg
     8101 ctttcatttt agcaggcgta ataaaattgc tcggatggtc ggagagtacc cgacctgtag
     8161 cggtaatttc ggctaaatcc gtctgcaatt cttgattttt aatcgggttt aaattcggtt
     8221 taatctgctt gttatgcttc tttttgctca taaattttcc ttttcagagc ttagttacgc
     8281 tcaatatagt ccccctcttt agcaaagagg ggagttacat taatgccgcc acttactgcg
     8341 atactcaccg tcaaaatcat ctacactctc ccactcaatc ggggcagagc tgctgagtgc
     8401 atttcgccat aacatttcca acgcatccgg accatcatcg tgatcggctt tcggaaaatg
     8461 gcgaagctgg ctttcaagcg tagattgcga gcggtgcaac aaaatcaaac cgttggcaat
     8521 atgcggttgc aagctctcaa tccgtaacat cttgtcactg ttcggcttgg ttgccgttgc
     8581 cggcaccggc ttaccacgct gggcagaacg cttgaccagt tccgtctgca aaaactcctg
     8641 aaattgcacc gtctccacaa accagcggtg acagttatat tgcgaatgca gtctaatcac
     8701 gtcctcaata attaaatccg gcaatcgttt tttgatttgt gcctcaacaa catagagctt
     8761 gccactctca cgatgatagc caccgaccaa aattgcagat gggtcacggc ttgccccagc
     8821 tttccccatt gaggggtcta acgccccgaa ataaatcagg tcatcaggca gttccgtcca
     8881 atactggata ctgttggcaa aaatcgcatc atcacccgag acagggtcat tttgatactc
     8941 ggagtcaaat gctgagtgcc catcactagc acggattttc atcaagtaga ggatagggcg
     9001 agctaaccaa gagactaacg ctcctttatc catttctgct ttatgctgtt gataaaagag
     9061 atcagacata gtgtcatcgt ccccttcttc cgagaggtat atattttccc attcgtccca
     9121 taacgccata ttgccgggaa agcgtaaaat ggctttaaaa cgaactcgcc gccaaccttt
     9181 tgtatttaaa atacggctaa gcacactgtc ataatgtaga attgtgccga catagataac
     9241 atcaaacttt tcacctgcag caccaagttt taaaactgct tttaaaaccc agttatgcaa
     9301 tttattacgc tgtgcaggtg tttctacgct ttcatcattc tcaatatcat caagtactac
     9361 taaatccgga cgataagctc cgtggcgacg accacgcaat ttttgcccag cccccacagc
     9421 ttcaactttt tgttttttag ccgtcataat gacacctgca cgccaaacct tgccttgtgc
     9481 aacctcgggg aaatcaattc ttaaacgagg gttagattca atttccactt taatagcttc
     9541 aagcatactg tatgcctgtt ctttggtgtc catcgcaata atgatgtatc tttttaaatc
     9601 acggactaaa caccacagcg ggaataattg cgtacaaatc gttgattttg cctcgccacg
     9661 aggggctgca atcgcttggc ggactgactt agaaagatca cttaccgaaa gcggtaaatt
     9721 ctcaaagaga taatgatgca actgtgattt atgttcagac cgcacatagt gtggaaaata
     9781 agcctgcaca aaatactcaa agccgtgaac agggtctaaa accttttgac ggcgttcgct
     9841 aatggcttgt ggtttatcgt cccaaccctc aaaactcgct tcgatatttt gttgtaactg
     9901 tcgccgtaat tcttccagtt ctttttcaaa ttctttgatt ttcataaatt acatacaagc
     9961 tgcgataagc aacaaccagc cccaaccgtc tgtaccgttg agcattagtt ttattgctcc
    10021 gaaaatacaa gcaagttgga caatccaacg gaaagagtaa tgcttatgca ctacagtttg
    10081 ttttttctta gccattactt aaactccttt ttgaattgca cttctagctc atctaacatt
    10141 tctaaaaagt caggcaataa atgcggtttc ttggttttga cgatattcgc catcatctca
    10201 atcgcacgca tagcggttgc cattgcactt gtttcaggca atagtttctt gctcgatgcc
    10261 gtcatcttcg caaacgaatc agccagagca gctaatgcct caaccttagc tgcggttggc
    10321 atttcggtgt tttcctcaag ctccgtcatc aacgtgcggt acttaattaa aaaaccggct
    10381 aacaagcctt gagcgatatt ctcaatacca ccgcttgcca tcgcttgcac atcacgagct
    10441 ttttcccagt tatcaccgtt cttttcagca gccgctttcc aacgccgtgc cgtgccgaat
    10501 gatacccctg cacgttctgc tgccatttcg aggcttaaac ggtcaaacac ataggcttgc
    10561 cgaaccgctt tttgtacttc aacatcgtgt gccatacgcc ctctacattc caaatttcag
    10621 gcgtaacaac tcaaaaccca cagcaacaat gccaccaccc aagccaccgg caactacagc
    10681 atcacggcgg tttttacgtg ccatttcatt cactaaacga ttagtcgctt ggatttcacg
    10741 gtgtaagcgt tcgatttctt cgttttgttt atccacctta tcgtttagct catttaatcc
    10801 acctaaaatc aggtctaatt tttccgaatc ggtttgcttt tgttttttac ggctcattac
    10861 ttatccgcct ttttatcaag tttttggttt acttctttga gcgagtctaa aatatcgtcc
    10921 agcttttcct taatccctct attcacttcg tgggcaagct ctttggattg atatttgctc
    10981 tccatttctg cttttagctc ttttaccgtt tgctcattgc ggttgatacg atcaaatatg
    11041 accttgccta caaacgccac taacggagca actacaaaag agatcagcat ctgaaacagt
    11101 ttttcatcaa tcataacgcc cccttttggc tcgcccgacc gggtgttgat taccttgtgc
    11161 caccgccgca cgcaccacgt tatgcaattc tgcaaggtca ggacggcggc gataaaaacg
    11221 ccattgttgc caacgctgtc tgagtttttt aattaacttc attctggcaa acttcctcat
    11281 aggtcagatt gtgtgcaagc acttggcgtt tcgtttccat tgtgtccgca cggctcgggt
    11341 aaatcagacc gaacgccgtg caacccgttg tcgtcacgga agtaaccgtg ttggtgcaac
    11401 tgctcatcaa tggcactagg ctgaatacgg cgagtttcac taacgtgttt ttgctgaatt
    11461 ttggcatttt taacctctgc atttttttgt tgaatttcga ccgcttgttg ctgcttttcc
    11521 gcctttaatg tagcggtaag tttccgctcc tgctttaatt gccagctttt ataaaaggca
    11581 taggctaaaa ttgtgcttac tacaccaacc acacctgcaa tttgttgagt aatcattctt
    11641 cagcctccct tgagcgttct ttttgtttta acgcacttac cacccctttt gtggctgggc
    11701 tacccaatac acaaatacca gcataagcaa accaccagtc ggaaataaac ggcttatcgt
    11761 aaaggtaggc gtgaattaaa atgcccgata acactaacca gctcataaac tgaataaagc
    11821 cagtggtgct ggctgtgccg tctttattgg taattaaatc aagtaaaaat tgcttcacga
    11881 ttattcctcc accgtgtctt tggcaaaata acgcaaatta cccgccattc ggttaatcca
    11941 acctctacca aaacggtcaa agtgtttgag tttggtgtaa aactcaaggc gttctgcctg
    12001 aaataacaag cccacatccg caaccgaata acgctcaatc gcagccaaag tcactttacc
    12061 gataatgccg tcatcagcca cacctaccgc tcgctgtaac attcggctag cattgcccga
    12121 accgtggttt acacacgcat ctaaaaactg aaaagccaac tcaggcggga actgctcaca
    12181 gttataacgt tgccaaaagg ctttgaggta aatagttttc gcatccgcac ggctcattgc
    12241 acgcatagag ccggtatagc cattcgcacg ggcagtatgg atagtgatac cccaattcgt
    12301 ttcgccaccg gggtctttcg ggtcgttcac ataaccgccc tcgtgtccga taagacggtc
    12361 aaatgcaaga ttaaagtcag caatagttgc cttgtttttg ataggttcag tcataaaaaa
    12421 agcctcttta aattcaatga tgatttaaag agactttaat gatttagagc aacggggagc
    12481 aggcgaaagg attccacact taaaacaagg tagcttgcga aacggtatgc ttacgctgat
    12541 aatatcgtac tgcctcccac gcaacacgat cacacacgct gtatttaggg caaatttgca
    12601 taatcgcaag cctgccactt agccctcctt gctcggttaa ttgacaataa tcggcataaa
    12661 tctgctgatt acgcaacatt cttaatgcgg tttcacaacg tggcaaatag acctcgcaag
    12721 ctcccatata agcctgtaat ttcactgcat catcttgccc taatacctct ttgagcttat
    12781 taaaatagag ttttccgtta gaaaattgga atgaaaagcc accaaaggct ttgattagct
    12841 tttcagttgc cggcaaacca atcacgccca caatttcttt caccgtttcc ggcaaataat
    12901 gttcgacact ttcaaattca gacataaaaa atccccttga ataatttcca cgaaagccat
    12961 tatccaaggg ggttattcaa atctgtaata cttacttaaa aatttttttg caaatttttt
    13021 aaaagctcag cccattttgt gtacggcata tctgatctag ctgcggttga tgacagttct
    13081 gtctcccacc gcattactat tctttgcccg acccctaata tgttagctac ctctgtttgt
    13141 gtgaggttat ggtgctttct tagcattttt aagttgcttg gtgtgtatcc aaactctggg
    13201 ttttcaatca ttcacctccc tccattaaac tagctattaa atacagcaac aacgataggg
    13261 tttctaataa tgctctcgcc tttatcttct ccgcctcttg cactatcgcc tttaactagg
    13321 ataaagtttt gcccacagta tgactggaaa cctttaaatt caacatcaaa ttttttgcaa
    13381 gcatcacgac ctagattttt aatagcattt aacaaacctg cttcatctgc attttggatt
    13441 cccattgtac aaatgccgtc taattcttca tctgtttttt caccatcgac ccaaacaaaa
    13501 gaatttccta attcatcgcc aacttgatgc acatctgtag ttgctcttaa accataaaca
    13561 gcgaagcagt cttcatcggc atcgtttagt aaagcattta aaagtttttg gtaatctgtc
    13621 attttaattt ctcctgtttg gctatgggtg cattatagta atataattac ctattgcaag
    13681 tgatttttcg tttttttctt aaattttttt atgtaaataa aaaagaccgc ttgaaagcgg
    13741 tctaaattta ttttttcttg gttgcagaaa tggattttgc aatggtaaag gcagtttccc
    13801 aagcctgttg attatctgta acctcaattt tacggcaagc aatcgcctcg ttgttaaagt
    13861 cagtcatatc aaccttgtcc gaattaacaa gcaaaataac acggcgtaaa gcacaagcag
    13921 caataggatt gtgatcgtgc ccaaacgaac cagtttccat tccgtaagct acatttctta
    13981 actgttgata atcaccactt acaagagcat ttgctgtttc ttgttcagct ttttctgtca
    14041 ttgctattgc tggtaacgac aataagcata aggttgttaa tagcagttct ttcattttaa
    14101 atacctttaa aagttgatta aaaaacacct aaaatctacc acaaaaaagc ccactattta
    14161 aagtgggcta tgcaataaat ttattattta acactcattc cgtgcctatg gttataactc
    14221 gccaatatct gcactaattt atgcaactga tcatctgtca gccattgcac ccgctcaata
    14281 ccaaacgagc gtttggcaat ggcgtgggcg taatcccacg gcttttggct ttgatacagc
    14341 aacgccccga ttttatttat caacccttgc cggtgagggg cggttttact tgctgttggg
    14401 cgtttaccgt attttttcga cttcaccaca aaccctttag ctttcattgt ttgcagtacg
    14461 gtcattaatt cgctatcggt catcattgag cagcttggtt tatccaccgc ctctaacaac
    14521 agcattttat aggcgttatc atccagtttt agctcatttt tgccgatatg gattttctgt
    14581 atcatctgct ttctagtttg cggttgcatt ttgcttttcc tcctgccatt tcagccaaat
    14641 ttgataactt tcggtgttct taacggcttc cagttgcccc atttgcttca ttcgttccac
    14701 atacatcacg gcatcgtgtt tcttttggtc tgcttgccgt tgctgttgct caaggctact
    14761 cactgctttc gcttcacttc ttactactgc aaattgtggc ttcacgcttt catatacttt
    14821 cttcaagtaa ttatgatttg ccagcggctc acatctgcca gtttcacgcc gattccgtct
    14881 tacttgttcc accgtatcca ttaaggcttt ttctaacaca ttagagggag ggtaaagctc
    14941 caataaactc tgcacaattt tcaaggctcg gctattggca aggctgtttt tctgtggctt
    15001 aaataaccct aaatacgcca ccaccgcacg cccacaattc ccaccgatat tgactatcgt
    15061 atttaacaac tcacgccctg catcatcttc aatcaacgcc tcaaacgaga tgtcggaatg
    15121 gcaaatcggg catttgcata gtttcatcat tctgttcctt cttctattgt ttcgagatca
    15181 acccaataag ttcgactatc agggtatggg ttatgccaag ttgctggagt tagctcgcaa
    15241 ataactaatt gttgtaacac aatctctccc gatttctttt tacataaccg atattcagga
    15301 attttttgat attccatttt atgctcctat aaaacacatt attcagccca cttaaatagg
    15361 ggttaaatgg gctgtaaatg ggttttatta cttcccctgt attgctaaaa actcactttc
    15421 tttaatctca accaatccct ctgcaatctc aggaaatggt tcatcatttt tatcaatagg
    15481 cattggcatt tcaaccagta aggtgttttc acaaatgcct gctacggcta aataacttct
    15541 acctgatgtt ggggaataac taaaatcact tacaaaataa agcatattca aacgttttaa
    15601 gatatagggc gaaaaatcac gatgtttctc ataaatttca ttaattgctt taaaatcttc
    15661 tgcaagttct ttcccttttt cgtaacgttt atcaggtttg acgaggtaaa actcatcatt
    15721 aaatttaccg accttgaacc ctttaacatc taaaacttgg ctaatattgg ttgctttaca
    15781 agcaatccct ataactattc tatgaaacca gcctgaccta ctaattaatc catcattgaa
    15841 aggatatttt tctaaaatag cattgagctt atccttgcgt tcttctttag atacttgata
    15901 atctgcataa atgcttttta gtggctcttg ggttatatcc cctttaaaaa atctaaattt
    15961 cattcttaac tccttactgg ggtggttaat gtttccgatt tgccgttaat aacttcaaat
    16021 gcacctttgg caacaaatcc tgcaccgtgc cgagataaac accactgcga ataaagtcac
    16081 tctgttttaa atatttttgt gcctgaataa tctgcattaa cgcctcgttt aattggctgt
    16141 taagttcgtt tttctcttgt tcggtcatca tctcctccta aaacggtttc ttatgcatac
    16201 gtttacaaaa taccgctcgt tgccccgccc agtctcagtt agcggtcttt tttgctgata
    16261 attttgcaac tttccaatgg tcttgggctt ctgcataatt gcctttacgt tcggcttccg
    16321 ctgctttctc ggcataatgt ttgtagcggt caaactcggt cgccttttgt tctgttttca
    16381 ttttttcctc ctgtggttaa aacactttat aaatgccctt ctatcttgtc cccctctttg
    16441 aaaaagaggg gctaggggag atttttaaag ggcattgaaa aggtttttta actaagactt
    16501 tcttt
//
LOCUS       DANMGB010000047        15978 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.047, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000047 DANMGB010000000
VERSION     DANMGB010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15978
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.047"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(103..1143)
                     /locus_tag="PXG19_001102"
     CDS             complement(103..1143)
                     /locus_tag="PXG19_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL6066408.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
     gene            complement(1152..2954)
                     /locus_tag="PXG19_001103"
     CDS             complement(1152..2954)
                     /locus_tag="PXG19_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL6066409.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAGQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            3104..3931
                     /locus_tag="PXG19_001104"
     CDS             3104..3931
                     /locus_tag="PXG19_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL6066410.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            3945..4973
                     /locus_tag="PXG19_001105"
     CDS             3945..4973
                     /locus_tag="PXG19_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL6066411.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            4983..5672
                     /locus_tag="PXG19_001106"
     CDS             4983..5672
                     /locus_tag="PXG19_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL6066412.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            5784..6299
                     /locus_tag="PXG19_001107"
     CDS             5784..6299
                     /locus_tag="PXG19_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL6066413.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            6296..6508
                     /locus_tag="PXG19_001108"
     CDS             6296..6508
                     /locus_tag="PXG19_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6066414.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            6514..6720
                     /locus_tag="PXG19_001109"
     CDS             6514..6720
                     /locus_tag="PXG19_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL6066415.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            6713..7279
                     /locus_tag="PXG19_001110"
     CDS             6713..7279
                     /locus_tag="PXG19_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6066416.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            7276..7731
                     /locus_tag="PXG19_001111"
     CDS             7276..7731
                     /locus_tag="PXG19_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066417.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            7880..8101
                     /locus_tag="PXG19_001112"
     CDS             7880..8101
                     /locus_tag="PXG19_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL6066418.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            8098..8583
                     /locus_tag="PXG19_001113"
     CDS             8098..8583
                     /locus_tag="PXG19_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066419.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            8576..9034
                     /locus_tag="PXG19_001114"
     CDS             8576..9034
                     /locus_tag="PXG19_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6066420.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(9085..9363)
                     /locus_tag="PXG19_001115"
     CDS             complement(9085..9363)
                     /locus_tag="PXG19_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066421.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            9402..12314
                     /locus_tag="PXG19_001116"
     CDS             9402..12314
                     /locus_tag="PXG19_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066422.1"
                     /translation="MSNNLKIQVVLSALDKLTAPFKSVVKQTEKLSQSLKVQRDELKA
                     LEKTQSKMQSFKKMDDSIKKSNETILKQTKHLDNLKNKISQMKNERIELKVKMDAKKR
                     EFQQITKGGSAWSARAAFLDKDFEKMQREYEKLGASISSVSRKRTEENRALKDSRHQQ
                     AKQLLYFRSLRRELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKAR
                     NEKYWATVEKVKNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNA
                     ILEVTEGSAEKAKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDT
                     GAAMGKPVMQAVEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKV
                     NKNNRKEIEQTLTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWI
                     KNKLQWVLDSLDKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARE
                     NKGLIATFVKWSAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALF
                     DSNDKFRLFNKSLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTK
                     VFWLNMLKGILGKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRA
                     FFGGFLQGLSKGLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKA
                     SSAGEKFGLALAGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEH
                     AKQITKTAEMSNNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGI
                     VHKGEYVMTKEATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTA
                     SQPSPTVAPVSQNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            12376..12555
                     /locus_tag="PXG19_001117"
     CDS             12376..12555
                     /locus_tag="PXG19_001117"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066423.1"
                     /translation="MMFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQ
                     KSQELNEFQREVVYG"
     gene            12548..12835
                     /locus_tag="PXG19_001118"
     CDS             12548..12835
                     /locus_tag="PXG19_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6066424.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP"
     gene            12964..13569
                     /locus_tag="PXG19_001119"
     CDS             12964..13569
                     /locus_tag="PXG19_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6066425.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            13569..13904
                     /locus_tag="PXG19_001120"
     CDS             13569..13904
                     /locus_tag="PXG19_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6066426.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            13901..14818
                     /locus_tag="PXG19_001121"
     CDS             13901..14818
                     /locus_tag="PXG19_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL6066427.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            14805..15437
                     /locus_tag="PXG19_001122"
     CDS             14805..15437
                     /locus_tag="PXG19_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL6066428.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            15440..>15978
                     /locus_tag="PXG19_001123"
     CDS             15440..>15978
                     /locus_tag="PXG19_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066429.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT         5090 a         3346 c         3553 g         3989 t
ORIGIN      
        1 ataaattgcc gaaatatata atctaatcag gcaaaacttt tgctttatat attaaaaaag
       61 ccccaatcta ggagctgtat tgtcagtttg taaagatctg ttttattgtg tccgctgtaa
      121 caatttagac ggtttaaatt tgataacctc ttgacctaac cactgattaa actctttcaa
      181 tcgctcttgc aatggctcaa tctcggtgat aaaaaacacc tcggcagcat cagccacgtt
      241 gccaaaaccg ccggtgttat ttgggataat ccccatcagt tgtggtggca cacggtgagc
      301 agctaacaca tcatcacggc tcacgttctt gatattaaaa aactcatctt ttgccgacac
      361 atcagcaatc ggaataatct gtattccatc tttcttgccg tttggtgcgt ggacgaacaa
      421 gtttttaaaa ttccccaccc cttttgactg cttgagctgc tggcgaatat tttcaacatc
      481 ttcttgtttt tgtgacgcat cgctcatata aaacacaaag ccggcgtgag ctccatttaa
      541 aaaatactta cggcgaaaca gagtagcact ctcatttaac cacgcagatt gcagggccga
      601 aagatattgt ggcaagccgt aaatatcttg attaatatca ggctcaagca agtgatagat
      661 tgagcctttg gcaaattcgt gttcttggtg atcgaatcgt tgtggcacat agtaaaattg
      721 accagcctct aaaccctttc gcacatattt tgccaaaggt gattcgattc gctgtacctg
      781 cccaaggcga tttcgcacca cctcaaaata ggcgttgcca aatactaaat aatctttaac
      841 aaacgatgac aaatcacggc gtgataaata acggctatca acctcgcaag tggaaagcaa
      901 aatatttgct ttggtgatga tcgcactttc gtggtgtgtt gatgacctta acgatttcgc
      961 caagccatca aagctcatcg gtgggttata ccatttctca tacatcgccg aacactccaa
     1021 ataattgaga atatcggcac ggtctaacac cggaatcggg tcaccaaaac tgaaaatttc
     1081 ggtttgtgct tgcggttgta agcggtcatt ttgggttaaa tttttgcgca attgtttttt
     1141 cattttttgt cctaatcatc taaaaaatct actgtgccgg tcgtttcttc cagtttccca
     1201 tcaaacggct cattaataaa tacctgcaag caagcccacg caaggtcggc gtggcttgcc
     1261 tcttccgaac ggtctgccac ataagtcact tgccgtccgc tgttggtgat ctgtttttta
     1321 attgccataa aactcgcacc aacctcaaca gcgtgcattg agtcaaattc aaatcgtcct
     1381 ttgctgataa tatccaagcc ttttagtacc atcttggatt tcagctctac gttgtaagta
     1441 agagccaccg catctggtcg ttcttttttg acgatttcat aaacaccgac accaagccct
     1501 gtggtatcaa tcgccagtct ggtcacgtta tattttgcac aaatagcgac aatttctgcc
     1561 gcttgtccgg caaaatcagc ccctttaaaa gtgcgatact ctaatagtcg gaatttcccg
     1621 ccgtccactt tcggcggagc gattaccacc aacgccgagc ggtcgccggt gtaagacggg
     1681 tcatacccaa cccatacctc tttattgccg aatgggcgtt ggtagccgtc cgtgaataca
     1741 taatctcgcc acacctccat cgagtccaca aggcaacgtt gcatcatcgt gaacttgaac
     1801 acagactggt tatcatcaat aaactcacac ataaagagct gctcgaactc atcgggcgag
     1861 ttttccagtt tgagttgctc aatatcaaac aggttacagc cacctgcctc ggcatcgtag
     1921 atattcacga tttgtcgcca ttggccgtct ccgcattttt tgccgttttt caagttggcg
     1981 tgagaaatat caatttccac ctgttccgct ttcggacgtt tgcggttaaa cagcttgccc
     2041 gaccaaagca gataggcgga atgggtaatg ctcgaagggg tagaaaaata agtaatccga
     2101 tattgttttt ggctcgccat acccgctgcc actttgcgga tttcctcaaa gcggtttacc
     2161 caaaagattt catcaaaata gagattgccg tggtaagact gtgccgtttt cgagtttgta
     2221 cccaagaaaa ttagttgaga ctcgttcggc aaggtaatgg tttcgccttt tagctccaca
     2281 tcggcaaccc gtttggcgta tgccacaata taggctctaa attgcaatgc ctgttttttc
     2341 gaggcggaaa taaaaatctg atttctaccg gttactaacg catcaactaa cgcctcgtga
     2401 gcaaaataat aagtcgctcc aatttgacga cttttaagaa tattgcggat tcgatgagtc
     2461 agcccagctt cgtgccattt tttctgataa tggaacattc cgtctaaaaa gccgtttatc
     2521 aacagttcgg cttgctcttc ggaaatggca ttttgctcgg gctttttgcg gtcgccttta
     2581 ttacggtttt taatatttgg gttgaggtcg gcttcattac ctccgccgtt agaatatttt
     2641 ttgattcgtg ctgtactttc caacaaccga cgtaaagcat ccatttcttt gtagtcgtta
     2701 ttgtttttgc tctctttcat aatcagcaaa ttcagccgtg attccagtgt ggcttccaca
     2761 cgtccaacgg ggctgatttc gtcccatttc tctcgctttt tccaacttgc aatggtagag
     2821 acgggaatat ttagctgacg agaaatttcg gtcacggtgt aacctgccca atactttgat
     2881 tgagcctctc gtttatcgtg tagagggttg gcagccaaca cctcgtattc agtgattgta
     2941 ttttcatttt ccataggtgc gattatcaaa aatccacctt gtttaagcat ttgcttgagg
     3001 ctgtgaaacc cgatttaaca cgtaccacac attgaaaccg ccggcacaaa acaagatcat
     3061 aaatccgatt tttacccctc ccctttagag caaggaaaaa cagatgacaa caaaatccaa
     3121 atggtttgtg gtagcaacgg aaggagcaac tacagatgga cgcgaaatta gtcgtgaatg
     3181 gctcacgcag attgaagaaa attacgaccc gaaaaataac tatggtgctc gtattaacct
     3241 tgagcatttc cgctggcgtt ggtttgagaa agatgacccg cattcttaca gctatggcga
     3301 tgtgttagcg gttaaaacag aagaacgtga agacggcaaa ttacagttac tggcagaaat
     3361 cgccccaacc gaagccttag tgaagttagt caaagacaag cagaaagttt atacctctgt
     3421 ggaaattgac cttaattttg cggacacagg cgaggcgtat ttagttggtt tggcggtgac
     3481 tgatacaccg gcaagcctcg gcacggaata cctcacattt tgtgccggtg caacccataa
     3541 cccactagca gaccgcaagc aaaagccgga aaaccttgtg agtgaggcag tagaggcgaa
     3601 tttagaattt actgctgaac ctgaaaaagg tgcgtggctg gagaaattta aggcgatgtt
     3661 taccaaagcc aaaaccgaca atgacggcaa atttgccgaa cacgaaaagg caatggaact
     3721 gttagctgag caatttagca aagtttcgac agaaaacgac cgcttgcaaa ctgaactaag
     3781 cacattgcaa atcgaattta ccgaattgca aaaacaagcg ggcgaatttg ccgaaaaatt
     3841 tgcaaaactg gaacaagaac cgtctgccaa ttacacccca cgcccaaaag ccactggtgc
     3901 gaaagcaggt gatgtacaaa ccgattttta attgaggatc acgaatgaaa gatttaaccc
     3961 ttgaaaaata taacgcctac cttgcacgcc aagctgaatt aaacaacttg ccgtttaatg
     4021 cattggcaac cggcattaaa ttcacagtgc aaccatcggt acagcaaaag ctgtatgaaa
     4081 aggtgcgtga aagctctgat ttcttaaaat ctatcagctt tgtgtttgtt gatgagcaaa
     4141 ccggtgaaac cttaggttta gattcagctc acaccgtggc cagcaccacc gataccagcg
     4201 gtgacggtga acgcaaaacc acctctattg cgaagttggt aaaacaaacc taccactgcc
     4261 aacaaatcaa ttttgacacc catatcaatt ataaacagtt ggatatgtgg gcgaaattcc
     4321 ctgattttca gcaaaaagtg gcgaatgttg cggcaaaaca acgcaaacgt gacttaatta
     4381 tgatcggctt taacggcaca agtcgtgcgg caaccagtga tcgcaacagc aacccgttat
     4441 tgcaagatgt ggcaaaaggc tggttgcaga aaatgcgtga agatgccaaa gagcgtgtaa
     4501 tgaatggcga aagcacagac aaccaagttt tagtcggcaa aggtcaagag tatgccaatc
     4561 ttgacgcact cgtaatggac gccaccgaag aacttattga tgaatggcat cgtgatgaca
     4621 ccgatttagt ggtgattacc ggtcgcaagt tgcttgcgga taaatatttc ccgattgtga
     4681 atcagcaaaa cgcaccaacc gaagaacttg ccgctgatat tgtgatctca caaaaacgca
     4741 ttgggggctt aaaagcggtg cgtgtgccgt tcttcccggc gaatgcgatt ttaatcacta
     4801 agctggaaaa tttagccatc tatgtgcaag aggggacaac ccgcaagcat attgagaacg
     4861 tgccgaaaaa agaccgtatt gaaacctacg aatcagaaaa tatcgactac gttgtcgaag
     4921 attatggctg tgcggcatta atcgaaaaca ttacactcaa agataaagag taaggtggaa
     4981 ctatgcgaat gagtccggct cgggctcatt ttttgcggaa aaccgcagaa agtgagtctg
     5041 caaccccaaa ccgagaaaac cttgaaggct tacaaggcta tgacttagtt ttagcccaac
     5101 ttaaagccca tcaacgccaa ttaaagaaaa tccagtcgat tgagcgaaag attgagttta
     5161 aacgcaacaa ttttgagcaa taccgacctt gggtggaagg ctcccttgcc aaaggctccg
     5221 gtgtgcaaga cacggttatc accacaatgc tgatttggtc gattgatatt ggcgattacc
     5281 caaccgccct tgcgattgct caatacgttt taatgcacga tttggcaatg ccggagcagt
     5341 ttgaacgcac accggcaacc gccttggttg aagagcttgc agaggcggca aagaaagccc
     5401 gagaccaaaa acagccgttt gaggcagccg tgctgaaaca ggcaaacgac ctcaccgctg
     5461 aatttgatat gcccgaccca gtgcgagcca aattactgcg tgagctaggc gagctaatcc
     5521 aagaggcaga gccacaaacc gcccttgaac actatcaaag agcgatagcc ctcgaccctc
     5581 aatgcggtgc aaaaggcttg cgagacaagt tagaaaagca acttgccaaa caagccgaag
     5641 agccgaaacc agcagaagaa cagaatgagt aggcgaaagc cgaaatagag cgtatccacg
     5701 ccagccaagg ggcggatttt aaagggtgat ttattcattt tgcacccttt taaaatcccc
     5761 accccttacc ttacggaaac cttatggaac aacgcaatca cgttattagt atcccgaaag
     5821 tgaatggcta tgaatccagc aaaaatgcga tcaagcccac cgcagaatct gatgaaacta
     5881 tcaccaataa tggctttttt ccgaacattg agctactgga ggtgcgaaat gcaatgcgga
     5941 ttgatggcac ggtcattaat gagcggctaa aacaagcggt gattgaggca atggcaacag
     6001 tcaatgccga cttaaaagcc tatcgcctca atgcagagca agcacaaaaa gcgaacttgc
     6061 aagcctgtga tgatgagcaa atcaacggcg aaagcgtgct ggtttacaaa tataaacgag
     6121 cggtctattg ccttgcagta gcgaaccttt acgaacgcta ccgcagttat gacagcacca
     6181 aagacggcca cgacaaagcc gaagagctag aaagtaccgc cggtgatttg aaacgagatt
     6241 accactttgc cgtgcgtgat attttgggcg aaaaccgaat gattagtgaa ttgatatgaa
     6301 caccttgatt gcacgccaag acgacacctt agacgagctg atctttcggc actacgggca
     6361 aacggcaggc ttagtcgagc aagccttaga atataacccc gaactggctc atttgccacg
     6421 tttgccgatc ggcactgtag ttacaatgcc ggatattgag agccgttttg caacggtggc
     6481 gaaatccagc gtgcaacttt gggattaaaa aatatgcaca aaactgaaca agcctcctat
     6541 tttggggcaa tttttggctt ttttggtagc ctcaccctat ctgattgggg ggtggtagtg
     6601 agtattctgg tagctatttt aaccttatta cttaattggg cataccgagc caaagaatac
     6661 aaactgaaag agcgagaatt tgagctaaag ctacaaaacc aagggaaaaa gaatgagtaa
     6721 aagtgtaaaa gttggcgtat ttgtctgctc cgttgcagct attatcggga cggtaaagca
     6781 atattacagc tccgaaatcc gcaccagcga aacaggctta gccattatcg gcaatgcgga
     6841 gggttgcaga cgtgatccgt ataaatgccc tgccgatgta atcacggttg gcattggctc
     6901 aaccgaggca agcggtgaga aaattaatgt caatcacaaa tacaccgata aagagattgc
     6961 cgagcgttgg ataaaagatc ttaaaatagc tgaaaggtgt atcaatcgtt attttaatgg
     7021 cgacaaaatg aacgaaaatc agttttcggc gatggtatca gcagcattta atatgggatg
     7081 ttacaacctt agattttatc caaatgaaaa tggtaaatac attcagacaa caatccataa
     7141 atatgctatg gctaaggatt ttaaagcgat gtgtaatagg atacctgatt ttaaccgctc
     7201 gggaggtaaa gtgctaagag gtttgaaaat ccgccgagaa aaagaaaaag ccctgtgtct
     7261 cgggcaggag gttaaatgat tgtcaaactc tgccaaatga ccaataagca tttcagcccg
     7321 ctaatgattg tgctggtgct agttggcgta ttagccaatt tcgtgcagtt tcgccaaaac
     7381 gaaagcctga aagcagactt acaggcacgc accacgcaaa accaactgat tcaagccgat
     7441 aaccgcaatt tagccaatca gcttgaaaac agccaaatac agcttgaggc gtatcaaaaa
     7501 caggtggacg acctcaatca gaaagtgtta gccaaaatga aacaagcgga gcaacgaagt
     7561 aatgaaatcc ttaacgaact ggaaaagcat aaaaagtggg ctgattctgc cgtgcctcct
     7621 agcgttggca agctgctcaa ccaacgaaag cgtgcggtat cacaccctca aatcgaaccc
     7681 gataatctgt ccgaaaaggc tggagtgcca aacaccggca accgagatta acaccaacgg
     7741 tgatcttgtc aaagcactag acaaaagact caacaccatt gaggtatgcc aagtcatcat
     7801 cgaatcgttc gagcattgca tcgagcaata caacaaaatc aaccaaggcg agtgatcgcc
     7861 ttttttaata aggacgacta tgtcagacca aatcgaccga gccaacgaat tagccgaaaa
     7921 agccagagag gcggcacttg caaaaattct gcaaaatcag accgcttgca ccagcctttt
     7981 tgagtgtgag gattgcggag agccaatccc cgaaaaacgc cgagaaatgg ttattggttg
     8041 cacccgttgc attgagtgcc aaaccattta cgagcataag caaaaaggct accgcagatg
     8101 attaaacctg atcgcttgcg agccgtgctc acacaaacca ttgatatatt ccaagctaac
     8161 cccgaaaagc tgattttgca atatgacaaa ggcaaaatta aaagcaaagg gagccaaagc
     8221 cattcgtttg aataccacta cgatttagag ctaatcgtgg tggattttcc gtatcacccc
     8281 gacgtgttgt ttgtgccagt gctaaatttt gtgcgaaatg aacaatggga gctactgcaa
     8341 aacccggaac tacaagacaa aatcgaattt gaaatcgacc acaacaatca cgagagctac
     8401 gatatttata tccgcctccc gcttaccgag cgggtgatcg tgaaagagca agacggacac
     8461 ctaactgcaa cccacgccga tgaaccgaac cttgccgatg tttcgccatt tacccgttta
     8521 accgaatatg aggtttacct caaagacgag ctgatttatc agtgggcaga gccaaatgag
     8581 tgaaccgatc gaacaagtaa aaaccgcctt tgatagctta ctgaataata tcagcaaacc
     8641 tcgcagacgg ttgatgtatc aacaaatcgg gcgagagctt gcccgaagcc aacgcagacg
     8701 gattaaagca caacaaaacc cagacggctc ggcatacgag ccacgcaaaa agccgaagaa
     8761 aggggtaaaa agcaaaatta aatcgggcaa gatgtttgac aaaattaccc agccacgttt
     8821 tatgcggcta cgccttgaaa gcgaaggtgt cagcttaggt tatgagggtg gtgatgcggt
     8881 catcgcccga atccaccaac aaggcttaat cggacgagtg cggaaagatt gggatttaaa
     8941 agtgaaatat gccagccgtg agttgctagg ttttactgat gacgatctgc agatgattga
     9001 ggattatatg attaatattt tggctggtag ctaaatgatg aatagaaact tttgcaaaaa
     9061 agcggtcaat tttgaccgct tgagttattg attaacgctt tgtctatctg aatgatacca
     9121 acaaagaaac cctaaaatag ctgaaaaaat caatgctatc aaaataaaag tattgagtgg
     9181 taacaataca taaagtgaga tcagaataac gataatagag agcccaacca tatttgccaa
     9241 taatgaaagc aggcttaaaa atactgttgt aactacacca aaaatggcag caaaggttgt
     9301 aaaacctatt gccaataatg caccgaaacc aattaaccca agtaagataa ataagatttc
     9361 catagatttt cccttagcca tactacaatt aaggttataa tatgagcaat aatttaaaaa
     9421 ttcaagtagt tctttctgcg ttagataaat taaccgcacc atttaagagt gtggtaaaac
     9481 agacggagaa attatctcaa tctttaaaag tacagagaga tgaattaaaa gcattggaaa
     9541 aaacacaaag taaaatgcaa tcatttaaaa aaatggacga tagcattaag aaatccaatg
     9601 aaactatact caaacagaca aagcatttag ataatctcaa aaataaaatc agccaaatga
     9661 aaaatgaacg aattgagctg aaagtgaaaa tggatgcgaa aaaaagggaa tttcaacaaa
     9721 ttacgaaagg tggttcagct tggagtgcaa gagccgcatt tttagataaa gattttgaaa
     9781 aaatgcaaag agaatatgaa aaactcggtg catctatttc aagtgtcagc cgaaaaagaa
     9841 cagaagaaaa tcgggcatta aaggattctc gccatcaaca agctaagcaa cttttatatt
     9901 ttcgtagttt aagacgtgaa ttgagagcaa gcggcattaa tattaaagct tttgctcaaa
     9961 gcgaaaccaa cttaacagac aagattgcaa aagcaaatca attaatcgac caacaaaaag
    10021 caaaattaga aaaactaaat gcggttaaag ctcgaaatga aaaatattgg gcaactgtcg
    10081 aaaaggtaaa aaataccagc gaacgtttgc ataatttagg acaacgctca atgattagtg
    10141 gtgcggcaat ttctgcccct gttgttgggc tagggaaagg ggttgtcgga atggctcaaa
    10201 cagcgggtaa atttgaacaa tttaatgcta ttttagaggt aaccgaggga agtgctgaaa
    10261 aagccaagca aagttttgat tgggttaaac aatttgcagt agataccccc tcaaaccttg
    10321 atgaagcaat ggaagccttt gtaaagttaa gagcatacgg tcttgatcct accaatggct
    10381 tactacaaac attaggtgat acaggtgctg caatgggtaa gcctgtaatg caagcagttg
    10441 aggcaatagc agatgcttta acgggtgaga atgaacgctt aaaagaattt ggtattaaag
    10501 gaagtgtagt taaaggtaca aatattattg agtatgccta cactgataaa ttaggcaaac
    10561 aacaagtcgc aaaagtaaac aaaaataacc gaaaagaaat tgagcaaacc ctaacccgta
    10621 tttttaacga aaaatatgct ggagcaatgg aaaaacaagc taaaacgcta gttggtattt
    10681 gggcaaaaat tgaagattat tggacaaatt tccaaatgca agtgatggaa tcgggagcat
    10741 ttgactggat taaaaataaa ttgcaatggg tgttagacag tttagataaa atggctgaaa
    10801 atggcgagtt gcaaaaatgg gctgaagatg tcggagccgt tattcaagaa acagtacaag
    10861 gcttatgggc ttttggtgaa aaaattattg aagtggttaa atggttagcg agcttggcac
    10921 gggagaataa agggctaatt gcaacattcg ttaaatggtc tgctattctt ggctctagtt
    10981 taacggtgct aggagctttt gcagtggtgg caagttttgc attatatcct gtagcaagat
    11041 tggctcttgg tatcggcaaa tttacaggtg caagcacctt attaaataag gcattatttg
    11101 atagtaatga taaattccga ttattcaata aatcacttta ttcatcaggc actacggctg
    11161 cttttgttaa atcaaaattt aatcagttag caactttacc aaatgtgctg ggaagtagtt
    11221 ttaataaatt aggcggtggc atcaaaatgc taattccaca gcttaaaaca aaagtatttt
    11281 ggctcaatat gctaaaaggt attttaggca agttgtggag tgcaatccgt tttattttct
    11341 caccgttgaa attattactt ggtattttct cgccgattgg cttagcgatt acagctattt
    11401 cggtagcagg ggtagcgtta tatagaaatt gggagaaggt cagagccttt tttggaggct
    11461 ttttgcaagg attatctaaa ggtcttgcac cagtattaga gagatttaaa cctttaggaa
    11521 aactatttga aactatatca aactgggtta aatctacgtt taagtggtta tccgatttat
    11581 taaccccagc ggataaaaca tcggaaagtt tagataaagc gagttctgca ggagaaaaat
    11641 tcgggcttgc attggctggt gcaatagact tggtaacatc acctgttcag tggctagtcg
    11701 atcagtttaa gtggatttct gaaaatatgc cgagttggga cactattggt gagggtgtaa
    11761 aaaaggcagc tactgcaatt gttcccaccg agcacgccaa gcagattact aaaacggcag
    11821 aaatgtcaaa caatatgtat gaccccaatt atactccacc acaacttgag caaaaatgga
    11881 ttggtggctt ggttggtaac ggtaaaggaa gaggttttgc cacaggcggc tacaccggca
    11941 atggtggcaa atatgagcct gccggtattg tgcataaggg cgagtatgta atgaccaaag
    12001 aggcaactgc acgcttgggt gtggcaaatc ttaaccggtt aaattatggc aaagttgctg
    12061 ggctaactgc acttgcgtca agtgttgcgt ttgctcaacc aatgcctgcg gtcaaaatcg
    12121 acagcagacc accgctgacg gcaagccaac caagcccaac agttgcaccg gtgtcgcaaa
    12181 atatccatat caccatcaac gccaccggtg ggcaagaccc acaagcaatc gcccgactgg
    12241 ttgcaatgga gttggaaaaa caacaacgcc aagcacaagc aagagcaaga tcgtctttga
    12301 gagacagggg ctaatttgac aaagtagaat gaaaagcgga caatgctcta aattgtccgc
    12361 tttttatagg agcaaatgat gtttaaagaa aaaggatatg atgaatttgt gaatgaatgt
    12421 gtgcgaaaag gtagagaaga acacaaagct ggtttaggat ttacgctaga gcaatctcgc
    12481 ttacatatca aaaaaaccat tgagcaaaaa tcacaagagc taaacgaatt tcagcgtgaa
    12541 gtggtttatg gctaaaatta ccattaaacc acaagcattg agtcaatttg acgagattgt
    12601 aaaaagtgtt atcgaattta ccggttttga aacgagtggt attcgattac aaagtgatat
    12661 ttttgacaaa atagagcaaa ttgcatttat gccactctct ggaagagcaa gagaagatgg
    12721 gacaagagaa actttcgtca gacgttatcg tattgtgtac gattacgata ggcaggcaga
    12781 tgaagtaatt atcttagcta tcattcacag tagccgactt tacccacgcc cataatcagt
    12841 aagcgaccta atcggtcgct ttttctttgc ctgttaaaac ccatttcaca cctcgcattt
    12901 atacccaaag cctttcgcct tttgcaaaat atcctcattt tttaaccgct tgtaattgta
    12961 aaaatgagtg agccaaacca cgccgaacaa atccgccgtt tagacaatat tatccgactt
    13021 ggcactattg ccgaggtgga tttaaccaca gcgactgcac gggtcaattc gggcggtatt
    13081 acgaccgatt tcttaccgtg gctgactttt cgtgccggta catcgcaaac gtggtcagct
    13141 ccaacagttg gcgagcaatg cgtggtgtta agcgtgagtg gtgaatttac cacaggcgtg
    13201 atcttatttg ggatttacac ccaaaacgcc ccgagccaat ccgccgatga gcatctattc
    13261 cgcttttcgg acggtgcaga aatcagctac aacaccgcaa gcggtcaatt aaccgtaaaa
    13321 aattgcaaag tggtgattgt gcaggcgaca gaatctatca cgctcgacac gcccacggtt
    13381 aaggccacaa aaaatgtcgt gattgggggc aacctatccg tgaaaggcac aacctcatcg
    13441 caaggtgcaa tcagcacaca aggggcggta acagcaaaag gcgatgtatc aggggcggga
    13501 atcagtttag gcagccacca tcacattgag caaggtgacg gcagaccaac tagcggagca
    13561 aaaccataat gaaccgagaa acaggcgaac agcttgaaga cgaagtagag catatcaagc
    13621 agtctatcaa agatattttg ctgacggcaa aaggcagtcg ggtaatgcgg cgaacctatg
    13681 gcagtaatct ctacaagcta actgataaac cgattgccgc aagtctgatt atgcaactct
    13741 ccgctgcgtg cgtgatggcg ttgcagcaat gggagccacg tatagcgatc acccgattta
    13801 aagtggaatt tgccgaagat aactacaata agctgatttg caccttagat tttaccctta
    13861 agcaccgaaa aatcagcatc aaaggaatgc gttttacact atgagcgaaa ttgtcgattt
    13921 atccaaactc cccgccccga aagtactgga agaattggac tatgaaacct tactggcaga
    13981 gcggaaagcc aagtttttat ccctctaccc agaaagcgaa cgagcggtaa tggctgcacg
    14041 gttagcgttg gagtctgagc ctatcaccaa gttactacaa gaaaattgct atttgcagct
    14101 actcgaacgc caacgcatta atagtgcggc tcaagccaca atgcttgctt atgctaccgg
    14161 tacggattta gatgtcatcg cagccaactt taatgttgag cggcttgtag tgcaagctga
    14221 agacttaact gcaagcccgc ctatcgtcga agagttagag cctgatgatg atttccgtca
    14281 gcgtgtgcag ttaaaaattg aaagtgtttc ggttgccggt ccacggaagg cttacacctt
    14341 tcacgccctg tctgctaacg gaaaaattgc cgatgtgtcc gtcatatcac cacagccagc
    14401 ttatgtaacg gtaacgctgc tttctcgtga tggcaacgga gccgtagcct cagaaatcat
    14461 caatgcggcc aaaattgctc tcaatgatga agaggttaga ccgattgccg atagagtaac
    14521 cgtgcaaggg gcaagcattg tggaatatga aattaatgcg gtgttgcatc tctaccgtgg
    14581 acctgagaaa gagcctattt taaaagcggc aaaagctaac ttagaggctt acatcaacca
    14641 aacaaaacgc attggacgag atgtgactca ctcaggtatc cacgccgcct tgcacgttgc
    14701 cggtgtgcaa aatgtggaaa ttttgcagcc gagaactgat ttggtgctga caccttacca
    14761 agccggttat tgtgtcaatt acacgctaaa tgttgaggtg agcgatgaat acagttaaag
    14821 cattattgcc acccggttca tcacttttgg aaaaacgagc tgccgaatgt ttgcaacaag
    14881 cggtacaaaa tccgattaaa tttgcaaatt tgattaatcc acacaaatgc cccgtgaaat
    14941 ttttgcccta tcttgcgtgg gccttatcgg tggattattg ggaagagcat tggagtgaag
    15001 aattaaaaag agaaaccatt attcgatctt ttgaagaaca ccgaaagaaa ggcacagcaa
    15061 gtgcagtgcg aagaattgtg gaatctctcg gctatgcttt tgaaatccgt gagtggtttg
    15121 cggaaaaacg gcaacggcag cccgggacgt ttagggtttt tgttgagtta aaagataaag
    15181 ggattagcga aaaaatctac caagaattag aaaggttgat tgaagatgca aaaccggtat
    15241 caaggcacat cacagaatta gcagtatcag ccacctcaaa aggcaaagca aatattttta
    15301 gtggagcaca cagtggcgaa attattacga tttatccacc taaaaagctc cctgttattg
    15361 tcattaaaag caaaatggat ttatttagtg caacaaacag tggcgaaatt attacgattt
    15421 atcctaataa gaggtaaaaa tggaacaaaa atataaaaca atattaaccc atcacggtga
    15481 gcgagtgatc gttgaggctc ttgcaaataa gataccagtg ccacttaagg aaatggctat
    15541 aggagatggt aacgggtcat caataactcc aagtgcatct caaaccacac ttgtaagaga
    15601 agtttatcgt gcggaaatta cagatttgct agaagacccg caaaatcgcc atcagatgat
    15661 tgctgaatta ctaatcccag aaaatgtagg tggatttatt gtccgagaaa tagggttatt
    15721 tgatgaacaa ggtggtttgg ttgctgtagc aaattgccct gaaaattata agcctgtatt
    15781 agaacaaggc agtggtaaag tccaatatta ccgaatgatt ttacaagtta gtagtagtga
    15841 tgcggtcacc ttatcgatta acaataatat tgtttacgcc acaagaactg agtttaacga
    15901 atttgtaaat aacttgagta gtcctgatgg ctataaacac atcggacgct gcaaatctgt
    15961 agcagaactc cgcactat
//
LOCUS       DANMGB010000048        15765 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.048, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000048 DANMGB010000000
VERSION     DANMGB010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15765
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.048"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            4..984
                     /locus_tag="PXG19_001124"
     CDS             4..984
                     /locus_tag="PXG19_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6066430.1"
                     /translation="MLDSKNTDLILSEIPNKILFLRHDGKIGDYVVSSFVFREIKKQS
                     PQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGGKQLAKEQYDVVIDPTVT
                     LRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSEIYQDALALIGFENIETQ
                     YDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSEQKINELLSCLKQHSDKP
                     IVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRFADLLISPDTATVHIASG
                     LSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDFAAIKPEWLK"
     gene            986..1876
                     /gene="ilvY"
                     /locus_tag="PXG19_001125"
     CDS             986..1876
                     /gene="ilvY"
                     /locus_tag="PXG19_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL6066431.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2010..4412)
                     /gene="lon"
                     /locus_tag="PXG19_001126"
     CDS             complement(2010..4412)
                     /gene="lon"
                     /locus_tag="PXG19_001126"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL6066432.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      4616..4734
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4910..6007
                     /gene="ribD"
                     /locus_tag="PXG19_001127"
     CDS             4910..6007
                     /gene="ribD"
                     /locus_tag="PXG19_001127"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL6066433.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6224..6871
                     /gene="ribE"
                     /locus_tag="PXG19_001128"
     CDS             6224..6871
                     /gene="ribE"
                     /locus_tag="PXG19_001128"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL6066434.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            6890..8089
                     /locus_tag="PXG19_001129"
     CDS             6890..8089
                     /locus_tag="PXG19_001129"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL6066435.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8295..8759
                     /locus_tag="PXG19_001130"
     CDS             8295..8759
                     /locus_tag="PXG19_001130"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL6066436.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(8805..10313)
                     /gene="lnt"
                     /locus_tag="PXG19_001131"
     CDS             complement(8805..10313)
                     /gene="lnt"
                     /locus_tag="PXG19_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL6066437.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10372..11271)
                     /gene="corC"
                     /locus_tag="PXG19_001132"
     CDS             complement(10372..11271)
                     /gene="corC"
                     /locus_tag="PXG19_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL6066438.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11409..12017
                     /locus_tag="PXG19_001133"
     CDS             11409..12017
                     /locus_tag="PXG19_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL6066439.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12098..12481)
                     /locus_tag="PXG19_001134"
     CDS             complement(12098..12481)
                     /locus_tag="PXG19_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066440.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12511..13080)
                     /locus_tag="PXG19_001135"
     CDS             complement(12511..13080)
                     /locus_tag="PXG19_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL6066441.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            13139..13984
                     /gene="nfo"
                     /locus_tag="PXG19_001136"
     CDS             13139..13984
                     /gene="nfo"
                     /locus_tag="PXG19_001136"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL6066442.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14112..14684
                     /locus_tag="PXG19_001137"
     CDS             14112..14684
                     /locus_tag="PXG19_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6066443.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(14751..15209)
                     /locus_tag="PXG19_001138"
     CDS             complement(14751..15209)
                     /locus_tag="PXG19_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6066444.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15383..>15765)
                     /gene="grcA"
                     /locus_tag="PXG19_001139"
     CDS             complement(15383..>15765)
                     /gene="grcA"
                     /locus_tag="PXG19_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL6066445.1"
                     /translation="IKGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVA
                     ISELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGY
                     AVRFNSLTPEQQRDVITRTFTESL"
BASE COUNT         4678 a         3085 c         3328 g         4674 t
ORIGIN      
        1 gccattttag atagtaaaaa tactgatctg atattatcgg aaattcccaa taaaattcta
       61 tttcttcgtc acgatggtaa aattggtgat tatgtcgtta gttcctttgt cttccgtgaa
      121 ataaaaaaac agtctcccca aacgcaaata ggcgtggttt gctcacagaa aaaccgatat
      181 ttatttgaga ataatcctta tattgataag ctctatttgg ttaagacaaa aagtattcct
      241 gattatattc gtggtggcaa acaacttgca aaagagcagt atgatgttgt aatcgatccg
      301 actgttactt tacggaatcg tgatctctta tttttacgca ctatatcagc caaacattat
      361 gtaggttatc agaaacaaaa atatcgatta tttgatctaa atgtagagga tagaaaacag
      421 catttttcag agatttatca agatgcgtta gctttaatcg ggtttgaaaa tatagaaact
      481 cagtatgatg tgccactaaa tgccacaagc aaccaatcca taaagcatta tttatatgaa
      541 aaccaaatta gaaattatat tgcgttaaat ctttttggtg caggttcggc aagacgtttt
      601 agtgagcaga aaattaatga actgctgagt tgcttaaaac agcatagtga taaaccgata
      661 gtcttactta cttttcctga agtaacggca aaattgtgtt cctttactaa gaagtataaa
      721 aatatatttg tctatgagaa aaccaaaagc gtttttgatt caatagaact gattcgtttt
      781 gcggacttat taatttcacc tgatactgca accgtgcata ttgcctcagg cttgagtaaa
      841 aagataattg ctttttacag tagcgatgaa cagaatttta tacattggca tccgaataat
      901 caggctgaaa cccatattct ccgttttaga aaaagcgtga atgatttaga ttttgctgca
      961 ataaaaccgg agtggctaaa ataatatgga cttccaaagc cttaaacttt tcctagatat
     1021 agcccaaagc cgtagtttta ttcgcagtgc ggagaagaat tatatgacgg cttccacact
     1081 tacccgccat attcagcgta tagaggagga gctcgggcag ccgttgtttc tgcgtgataa
     1141 tcgacaagtg cgtttaactg aagcagggga aaggtttttg gcgtttgctc aacaaggttg
     1201 ggcagagtgg cagcagttgc aaaaccagtt gtcgcctgct caaggtgatt tagaaggaga
     1261 gttgaaagtg ttctgctcgg taacggcttc ttacagccat ttaccgccga ttttgggaaa
     1321 gtttcgccaa aaatatccga aagtggatat taaactgagt accggtgatc cggctttggc
     1381 attggaacag gttcagtcat tggctgcaga tatttcggtt gcgggtaagc cggaatttct
     1441 gccgaataat attgtgtttc actatattga tgatattcaa ctttcgatta ttgcccctcg
     1501 tgtggcgagc caagccactc aatttctgca acagtcgccg atagattgga aaaatatccc
     1561 ctttattttg ccggtgaacg gacctgtacg aaaacggatt gaccgttggt ttaaagagca
     1621 aaaaatcaaa gacccgatta tttatgctac cgtctccgga cacgaagcga ttgtgccgat
     1681 ggttgcacta ggctttgggg tcgcactgct accggatatt gtgattaagc atagcccaat
     1741 gaataatcaa gtttcttatg tgaatttacc ctcgccgatc actccgtttg agctgggaat
     1801 ttgcgttcag caaaaacgct tgcaagagcc gatcatcaac gcattttggc aattattgtc
     1861 tgataattca gcataacaag cggttagatt ttgctaaatt tttgcaaaaa atagagcaaa
     1921 accgaccgct tgtagataaa actttcagat aaaaaataag gtgcgtgatt gtgatctgcg
     1981 caccttatgt tgttttagat tattgcactt tattgcactg tggctttagc tcgcgatttt
     2041 ttcaccttga tctcggcttt tgacaagatt tcaatcccca ttggcgggtt ttctagtgcc
     2101 agagctagta cctcgtcaat ggtttctact gcgtgaatgt ccaacgctgc ttttgcattt
     2161 tccggaattt cctctaagtc tttttcattt tctttcggaa taatcaccgt cgtaatacca
     2221 ccacgatggg ctgccagtaa tttctctttt aagccgccga ttggcaatac tttgccacgc
     2281 aagctgattt caccggtcat cgctacttct ttacgcacag ggttacctgt taggctggaa
     2341 attaatgcag tacacattgc aatccctgca ctcggaccat ctttcggtgt tgcaccgtcc
     2401 ggcacgtgaa cgtgaatatc ccgtttttcg tggaagtctt cagcaatgcc taatttttct
     2461 gcacgagagc gtacaaccac cattgccgct tgaatagact ctttcattac atcgcctaat
     2521 gaaccggtgt aagagaattt gcctttacct gcaacagaag cggtttcaat ggttaataaa
     2581 tcaccgccaa cttctgtcca cgctaaaccg gtcacttcgc caatgcggtt ttggctatcc
     2641 attttgccgt agtcaaaacg ttttacgcct aagtattctt cgatattttt ctcagaaact
     2701 gtaatggatt ttaatttctt atccaatact aaagctttca cggctttacg gcagattttc
     2761 gcaatttcac gctcaaggct acgcacgcct gcttcacggg tgtagtagcg gataatactt
     2821 aaaattgcac tgtcttcaat ggtcagctca ccctctttta gtccgttatt ttcttgctgt
     2881 ttagccagta aatgaccacg agcaatgtgc attttctcat cttcggtata gcctgaaaga
     2941 cgaatcactt ccatacggtc gagcaatgct ggcggaatgt tcattgagtt tgaggttgcc
     3001 acaaacatta catcggataa atcgtaatcc acctctaaat aatggtcgtt aaaggcttta
     3061 ttttgctcag gatctaacac ttcaagcaga gcagaagccg ggtcgccacg catatcttga
     3121 gccattttgt cgatttcatc taacaagaac agcggattac gcacgccgac tttcgccatt
     3181 ttcatcatta ggctacccgg cattgagccg atgtaagtac ggcgatgccc acggatttcc
     3241 gcttcatcac gcacgccacc taacgccata cgcacatatt tacgccctgt ggcattggca
     3301 atagattgcc ctaatgaggt tttaccaacc cccggcggac caactaagca caaaatcgga
     3361 ccttttaatt tatttagacg actttgcact gctaagtatt ctacaatccg ctctttcact
     3421 cgttctaagc cgtagtggtc tttatccaaa atctcttgag cttgggctaa atcttttttg
     3481 accgctgatt ttttatgcca cggcatttgt aaaatccagt caatataacc acgcacaacg
     3541 gtagcttcgg aagagctttg cggcattgct ttgagctttt tgaactccgt attcagcttg
     3601 tcttttacct cggtcggtaa ttttgcagcg tcaattttct ctttaagctt atctaactcg
     3661 ctttgttcaa cgtcatcgcc attacctaac tctttttgaa tcgctttaat ttgctcgttg
     3721 aggtagtaat cacgttggtt tttttccatt tgctgtttaa cacgattacg aatccgagtt
     3781 tcggtttcaa gcgtatccat ctcagttgcc atcgcaatta acaaggcttc aaaacgggca
     3841 atcagatttg gttgctccaa taattcctgt tttttcttca ccggagcaat taagttagag
     3901 gcaatggtat ccgccaagcg gtcttccaac gtgatttttt gcagtttagc aataatttcc
     3961 gccggaattt tcttgttatt tttaacgtaa ttttcaaatt cggttaaagt ggttttagca
     4021 atcgctttta actcttcgtt ttcgtcatca tattccgaat atattggctg aattgccgcc
     4081 cagaagccgt tttcatcatc gtgaatttgc tcgattttgg cacgggtttg tccttctacc
     4141 agcactttaa ctgtgccgtc cggcaggttt aacatttgaa taatgttggc aattacacct
     4201 acgccataca tatcttctgc attcggctct tctttatttg gatcttgctg agtgactaaa
     4261 aacagttgtt tattggaatc catcgccgag cgtagggctt gaattgattt ttcacgtcct
     4321 acaaataacg gcataaccat ataaggaaaa accaccacat cacgcaatgg gagtagtggt
     4381 aattcaatcg ctttcttttt tcttggtgcc ataaatttgc tctctctatc aaaatataat
     4441 cccccattat gagggcgaat ttgggaaaaa caagggaaaa tttgatttat cttaaaaaaa
     4501 ctcgaatagt caaaacagta gatgttggcg atttaatcaa ttgttaaaat cagggtaatt
     4561 agcttaattt cccgcttgac atcaaatcgt aatgcgagca aaatcccctg catattttaa
     4621 tcttcagggc agggtgaaat tcccgatcgg cggtaaagtc cgcgagccga gcaatcggca
     4681 ggatttggtg aaattccaaa accgacagta tagtctggat gaaagaagag tcaaaaaccg
     4741 caaaaaatac cgcacaagcg gtcatttttt gtgtcttttt tgcaagcctt gagtcgtgag
     4801 atttcaaggc ttcattgttt tgcaggcggc gtttgcaaat tttttactaa aaacgaccgc
     4861 ttgtattgca ataatccttt cattacgccc tcaatttatc aaaatgtata tgacagatgt
     4921 tcaatatatg gcttatgcca tcacccttgc cgaaaaagca cggggttgga caagccctaa
     4981 tccgctagtt ggctgtgtga tcgtgaaaaa cggcaacatt atcgccgaag ggtatcacca
     5041 aaaagccggt agttggcacg ctgaacgcaa tgcgatttta aactgcgagg aagatctgac
     5101 gggggcaacc gcttatgtaa ccttagagcc ttgttgccac cacgggcgaa ccccgccttg
     5161 ttccgaactg ctgattgaac gtgggatcaa aaaagtgttt atcggctctc gagatccgaa
     5221 cccacttgtt tctggcaaag gagcggcaca gcttagagcc gccggcattg aggttgtgga
     5281 agactttatg cgaacggagt gcgatgcgct gaacccgatt ttcttccatt acattcaaac
     5341 caaacgccct tatgtgttgc tgaaatatgg gatgacggca gatggtaaaa ttgcgactta
     5401 tacggggaat tcgaaatgga tcaccggcga ggctgcccga gctaatgtac agaaaagccg
     5461 ccacgaatat agtgcgatta tggtcggggt ggaaacggtg cttgccgatg acccaatgct
     5521 caacagccga atggaaaatg ctaaacagcc ggtgcggatt gtatgtgaca gccaactgcg
     5581 taccccattg gatagccaac tagtccaaac tgcacgccaa tatcgcacca ttattgctac
     5641 gctcaataat gatgcaaaaa agcaggcaga atataccgct tgcggtgttg aaattttagt
     5701 gacaggcgaa cgtgacaagc gggtggattt agccgatctt ttgcaaaagc tgggcgaact
     5761 cgggatcgac agcttattga ttgaaggtgg ttcgcaactc aatttcagcg tgctggaaca
     5821 ggggttagtc aatcgagtac attgctatat tgccccgaaa ctgattggcg gcaaagcggc
     5881 aaaaaccccg attggtggca aggggattgg cgagttagca caagcggtta aattacgtct
     5941 aaaatccacc gaattgctcg gagaagatat tttgttggat tatgaagtgg acttgcttcg
     6001 taattaaatt gaaatttcct tactctcgcc cgtttacggg agagagacag cataaaattt
     6061 cgttcagaaa ttttatgcag agagagggga aaatgagtgt aatcttccct ctccctccga
     6121 aaatcctacg gattttctct tccctctccc gtaaacggga gaggggaata gtaagataag
     6181 cagttctcag actaaattgg aagtaaatcg gagaaaaatt taaatgttca caggcattat
     6241 cgaagaagtt ggccagatag cccaaattaa gaaacaaggc gagtttgtgg tggtaacggt
     6301 taaagcaaaa aagattctga ccgatgtaca tttaggggat agcattgcgg taaatggcgt
     6361 gtgtttaacc gtgacttcat ttacgcagga gcaatttact gctgatgtta tgtcagaaac
     6421 cttaaaacgt acatcacttg gcgaattaag tatcaacagc tcggttaatc ttgagcgggc
     6481 aatggcggca aacgggcgtt ttggtgggca tattgtgtca ggtcatattg atggcacggg
     6541 tgtggttgca gagattacac cagcagataa ttcaacttgg tatcgcatta aagccgaacc
     6601 taagttaatg cgttacatca ttgaaaaagg ctcaattact attgatggca ttagtttaac
     6661 ggtggtggat gttgatgcgg aatctttccg ggtatcgatt attccgcata ccattaagga
     6721 aaccgacctc ggtacgaaaa aaatcggtag tttggtgaat ttagaaaatg acattgtcgg
     6781 caaatatatc gaacagtttt tattgaaaaa agagcctgaa aatccgcaaa gtaaaattac
     6841 tgcggacttt cttaaaaatg cagggtttta accaaataaa ggacaaataa tgtttaagtt
     6901 ttcaacggta gaagaagcaa ttcaagcaat tgcacaaggg aaaattattt tagtcagcga
     6961 tgatgccgac cgtgaaaatg aaggggactt catttgtgca gcggaatttg cgacaccgga
     7021 aaatatcaac tttatggcga aatatggtaa agggttgatt tgtacgccga tttcgacaga
     7081 aattgccaaa aaattaaatt ttcacccgat ggtgctagag aacgaagata atcatcaaac
     7141 cgcatttacc gtttctgttg accatattca aaccggcacc ggtatttccg cttttgagcg
     7201 ttcattaact tgcctgaaaa tgcttgatga aaatgctaag ccggaagatt ttagacgtcc
     7261 ggggcatgtt ttcccattag tggcaaaaga cggaggcgta ttagtgcgta acggtcatac
     7321 cgaagcaact gtggatttag ctcgtttggc gggcttgaaa ccggcagggc tttgctgtga
     7381 aattatggca gaagacggca cgatgatgca gatgccggaa ttacaggcat ttgcacaagc
     7441 acacaatatg ccgtttatta ctattcagca gttacaagag tatcgtagaa aacacgacag
     7501 cttggtgaat gtggtttcgg tggtaaaaat gccgaccaaa tacggtgagt tcaaagcaca
     7561 cagtttcgtt gaaactattt caggcaaaga acacgtcgct ttagttaaag gtgatattgg
     7621 tgatggcgaa aatgtattat gccgtatcca ttccgaatgt ttaaccggcg atgcctttgg
     7681 ctcacaacgt tgcgattgtg gtcagcagtt cgcagcggca atgaaccaag tggagcaaga
     7741 gggcagaggc gtggtgcttt atttacgcca agaaggacgt ggcatcggtt taattaataa
     7801 actgcgtgct tacgaattgc aagatagagg aatggacacg gttgaagcca acctggcatt
     7861 aggtttcaaa gatgatgagc gtgaatatta tatcgccgct caaatgtttg aaaaattagg
     7921 cgtaaaatcg attcgtttgt taaccaataa tccggcaaaa attgaaggac tcattgagca
     7981 aggtttaaac gtagtggctc gtgagccgat tatggttgag ccaaacgaac acgatttgga
     8041 ataccttaaa gttaaacagc acaaaatgcg acatatgttt aatttctaat ccaatactct
     8101 ctccccttgt gggagagaga cagaaaaata cttcgttcag aagtattttt cagagagagg
     8161 gtatattttt tagaaaaagt ttgcaatttc ccctctccct gatttttctt ctgaacgaag
     8221 aaaaatctat ccctctccca caaggggaga gggttattga gtatcaaatt tattttaaag
     8281 aaggaaaaca aacaatggca acatttcaag gaaactacat cgcaactggt ttaaaattcg
     8341 gtattgtggc aactaactgg cacaagattt ttatcgatca actgttaaac ggtgcaaccg
     8401 ataaattatt gcgtcacggc gtagaagaaa aaaatatcga caccgtatgg gtgccgggtg
     8461 cattagaaat ctcaattgca gcgaaaaaaa tggcacaaag cggtcgttat gatgcgatta
     8521 tctgcttagg tgcggtcgtg cgtggagcaa ccagccacta tgatgtggta gtgaacgagt
     8581 cagcaaaagg catcagctct tctgctttag aaaccggcgt gccgattatt aacggtattt
     8641 taacggtgga aaatttagag caagcgattg agcgttcagg cactaaagcc ggtaataaag
     8701 gcgaagagtg tgcaatggta gcgattgaaa tggcgaacct attaaaagcc ttagcgtaat
     8761 cagcgataaa atccccttag acccaagagc ctaaggggat ttttttattt tctgcgtagt
     8821 aacaggctgg caatgacaca aaataggctg aaactgtaaa ttaaccagtg acctaattgt
     8881 ttaaacggcg tatcgccttt ggttggcaca atggtggcag ttagtgcatc agcagtaaat
     8941 tgcggtagtt gttcaattac ttttccgttg gcatcaacaa tggcggtaat accggtattc
     9001 gcagctcgaa gcaatggttt gccaagttct aacgctcgca ttcttgccat ttggaaatgt
     9061 tgccaaggcc cgatggaaga accaaaccac gcatcattgg tgatagttaa taaataatct
     9121 gaattttggc ttttttggtt ttgttgtaac tgatcaccaa aaataatttc atagcaaatc
     9181 gccatattaa atcggttgtt tttcgccaag aatgatggtt gaacgaaact gccttgtgaa
     9241 agattaattg gtagaataaa cacttcccgc atccaatcca gcaccgagcc aaacggcaca
     9301 tattcgccaa acggcacaag gtgatgtttg ttgtagcgag ggttgctgtg cagggcatat
     9361 tccctctctt tttcgcctaa tagcacgcta ctgttaaaca gttcctcttg ctcattttga
     9421 tagagtgtgc cgataataat ttcacttccg tgttggcgag ctaagtgatc gagcgagcca
     9481 agcagcgggc tgatttgatt ttcaagtgcc ggaatggcgg attcaggcaa aataatcagt
     9541 tcactgttac ctaatagggg cagaatgagc tgttcgtagg ttcgtacgct gtggttgaaa
     9601 tgttgcggat cccacttcat tttttgctca atattccctt gtactaaact cactacaagc
     9661 ggttgttttt ctgtatcaat ttgcacaaat tggagaaagc gagtggcaaa acttaagcca
     9721 aaaatgaccg ctagtaccat caatgatggc acagttttgt tctcttgctg aataattttc
     9781 actagatagc tacttgcaac tattaccaag aaagtcaaac cttcaacgcc caaaatcggc
     9841 gcaataccag caaaggggct gtctattaag ctatagccga attgtagcca cggaaaaccg
     9901 gtaaatacca cgcctcgtaa atattcggta aaggtaaaaa tcgcagccaa tgcaaacgga
     9961 ttattcagtt tgagcctgtg tgaaactaca ctaaacagca gattataaat agcgagatag
    10021 cacgccaaca ggaatactgc tatgtagctt actatggtag gaacaccacc aaattgggtc
    10081 atactcacag aaacccagtt tacaccggtg cagaagtagc cgatagacca agcaaaggtt
    10141 gcccataatg cggtttttct gtttgccaga gtggctgacc aaaccaagcc ggctgcggaa
    10201 gcaaaggcaa gaatccaaat atcaaaaggc gaataggcga aagtgccgat tgcacccagt
    10261 atgattgcaa ggagacaagc ggttaaaaaa ggcggatttt ttgcaaaatt cataataact
    10321 cactaaataa atgaggcacg ccgaaacgtg ccttgattga aactcactat attattcttc
    10381 ttcgttagga gaggtttttt ccattttctc taactgttca tcggaaagtg tgactcgtag
    10441 ctgaatcaat tggcggctat tagctgaggt gactttaaaa tcaattccgt ttaactcaat
    10501 ttgctcatct cgtttcggga aataaccgaa agcctgcatc actaaaccac caatggtatc
    10561 cacctcttcg tcattaaagt cggtagcaaa aaattcattg aattttttga tgtcggtgag
    10621 cggtaatacc gcataagtat gtcttgaaag ctggcgaatt ggtttgacct cttcttcatc
    10681 aaactcatct tcaatatcac ccacaatttg ttcaagaatg tcttcaatgg tgactaagcc
    10741 tgaaaccgca ccaaattcat caaccactac tgccatatgg aagcgttctg aacggaactc
    10801 ttttagcatt cggtctaggc gtttgctttc cggtacaata accgcagggc gtaatacctg
    10861 ttgcagatta aagggttcag agtcagaacg taaatatttc aataaatctt tagagtgaag
    10921 aataccttcg atagtatctt tctcaccccg aatcaccgga aaacgagagt gtgcggattc
    10981 aataattaaa tcaatacaga catctaaagg ttcattggca tcaataaaca caatttgcgc
    11041 acggggaatc ataatatccc gcactcgtaa ttccgagatt tccattactc cttcgatcat
    11101 ctctttggtg tcgctgtcga tcaattcatt ttcaacagag tctcgaatca cttcgactag
    11161 atcttcacgg tttttaggct cgttttgaaa aagcccgcta aatagagagt gtaaaatcga
    11221 ttttttttct gatttttcgg tggtgtttac actttgctgt tcatcactca tagtttgttc
    11281 cacttaaata aagtacgctt ataataagca aattcagtca caaagcaaat aaaacattgc
    11341 tattttcact caaattagca taggataagc aaaaatcttt ttatttcttc atattttagg
    11401 agtttgaaat gaaattaacc aaaatagcat taagtttaac agccttagtt gtcagttcga
    11461 tgagtgtggc cgggacgtta agtacatcat caatggtgga cattttagcc tttgacgggc
    11521 aacgtgttaa atccggcacg acttcggttc aaatgagtga gaataaaacg catcaagtgg
    11581 tagtggaagt cggtgggaca gttgaagggg attttttcac ctctgatcaa atcattttga
    11641 ctttccaagg cagtgcggaa aatgcaaaat tagaaacgcc aagattaaat tcaaagttag
    11701 atcttcgtaa attccaagag aatcagactg tggcaattaa aaccgattca ggtaaggtta
    11761 tttcacataa acaagatttc ttaaaagggg aaggtttcct tgcgaaaaca agagttgaag
    11821 ataatttaac gaaatataac ttagcgaaaa aaacagcttc agttgaacag tttgcgacgg
    11881 cacctcttga agcaaaagga caaattgtgg tggatacaaa taaagtttca caagaagaat
    11941 tacagctttt atttagaaag gcagataaag acacccaaaa acgtttctta gaatgggcga
    12001 agaaaaatat aaaataaacc tatatcaatt aataagcggt catttctcgc caattttttg
    12061 caaggtgtta aaaaaatgac cgctcataca atgagattta ccagcaataa tagcagtaac
    12121 gccagcctct atacatatag tctctatcgt aattccaacg aatttcttca agttctactt
    12181 gtgccttgta attttgccaa gcaagcttat aacaggcttg gaacattggg gcattgactt
    12241 tttcggcata gcgtttctta aatgctttct cttcttgttc ggtttggcta agcggcggat
    12301 taaattgttg gtacattaac tccgccgttt ctacatcaca ttgtttggcg agctgaactt
    12361 gcaaatcttg ttctgcccga atttgcttcg ctttacgttc agcttgttgc tctggagtta
    12421 aagtacagct acttaacata agtgcgagtg aaaaaatgca gcctaatttg agtgttttca
    12481 ttgctgaatc ctctagttga aattggtgat ttattctacc gcttctaact cactttcttc
    12541 aagttcatca gccatagcac taagggcatc acggctaagt tgtgcgaggg ctttataaaa
    12601 accattgtcg aaagcttcta tttttcctaa gaatttgcct gcacaaggta gtaaaaattg
    12661 ttcgaataat attttttgag ctaaggcaga atcgagatta tcttcgatcc aagatgccgt
    12721 gagaaatagt aacccaatgt gatcggcatt ttctaattca ggcattgccc gctcttgtct
    12781 aaaagctaca aaattattaa ctgataatcc ataggctgaa attgttggag aaatagcccc
    12841 attttcagca aaaagcgctt gatagcttgc tgctaattgc gtagggttag cattcttttg
    12901 taagagagtc agcgcatttt cactttggct atccgtattt aatgcccaga cttggcgtaa
    12961 tcctccttgg gcaagccagt taaatgtgcc agctaaaata gggtcggtag ggtgacgata
    13021 aaataagttg ccaaacaaac ggcaaagcag ggaaaaatcg ttaatggtag tttcgttcat
    13081 aatttgaaat agatagaaaa aagaattgtt agtatagcag aacacaagag aggactgaat
    13141 gaaatatata ggcgcacacg ttagtgcttc aggtggggtg gaaaatgcag ttttgcgttc
    13201 cgtagaaatt ggtgctaatg catttgcgtt atttactaag aatcaacgtc aatggcaggc
    13261 accggcatta aaagccgaaa ctatcgaaaa atttaagcgt ttttgtaaag tgcatcattt
    13321 ttcagcagag caaatcttac cacacgatag ctatttgatt aatttaggaa atccggaagc
    13381 ggaggcattg gagaaatctc gtgtagcatt tattgatgag atgtctcgag caaatcaatt
    13441 aggtttaaaa ttgttgaatt ttcacccggg ggcgcattta aagcaaattt ccgagcaaga
    13501 ttgtttggct agaattgcag aatcgatcaa tattgcagtt gaaaaagtac cgaatgttat
    13561 tgccgtgatt gaaaatacgg caggacaggg ttctaattta ggttggcatt tcgatcattt
    13621 ggcaactatt attgagcaag ttgaggataa aagccgagtg ggggtgtgtt tagatacttg
    13681 tcacttattt tctgccggct atgatattag ttcttatgaa aagagcgagg cagtatttaa
    13741 tgattttaac caaacggttg gttttcatta tttaagggga atgcacttaa atggttcaaa
    13801 aacaccatta ggcagcagag tggatcgtca tcatacctta agagaaggca caataggaac
    13861 cgaagtgttt gcatttatta tgcaaaatat gcattttaac catattccta tgattttaga
    13921 gacaatttcg cctgaaattt gggcagatga aataaaattt ctacgcacat tggaactaaa
    13981 ataggttata ctggtctgag tagtgggtct agcagagtct agaccttatt ttgttatctt
    14041 ttttaatctt ttagaagatt tagttaagga atttaccgct gtaattgttc tggcgagacg
    14101 agacataaat tatgaaaaaa aatctttttg caacaacctt caagcccgta tttattgctt
    14161 ctattttgtc tgtttttgga gggtattctt ccattgctgt agcaagttta agttctaaac
    14221 cggccacacc aaatcaaatc attgcaagta aagcagaaag attagctaag tcttcttcag
    14281 tatttaccaa tcgagcaaat cttccaactt cttccgctca tacagcgaat tatagtggtc
    14341 gtattaatag tgtttatcat aattgggtag ggacacgcta tcgtttaggc ggcacaacaa
    14401 aagcaggaat tgattgttcc gcctttgtgc gtgaagtaat gggcaaagca tttagtaaag
    14461 atatgcctcg ttcaactgca gaacaacgcc atgtcgggca ttccatttca aaatctgatt
    14521 tacgcccagg tgatttagtc tttttccgta agaataacca tgtaggggtt tatattggta
    14581 atggtaaatt tgtacacgct agttcaagta gaggggtaac caccagctca ttgtcagaaa
    14641 gctactggtc aagaaactac acacaatctc gccgtgtaat ttaataaatt acaattccaa
    14701 gatgaaaaga acactcactt ttgcgagtgt tcttttttaa ttaaaaaagt ttatgctacg
    14761 cgttgcttag cttgtgtaaa tgctccacga gtacgcattt gatgaaccac attagtaatt
    14821 acacctgcta tttttacttc agcccaatca gtaattctaa gatttgattc gctcacatct
    14881 aatgaaaata aaattttttc agcaatacct tccccattct gaatttcatt aaagaattga
    14941 tagaatttat attccccatc tttttcaagc accaatagat cattaactaa atattggttg
    15001 gtctgttcta caatcaataa atcgtctagt tcaattcccc acgcgattaa atttgggttt
    15061 ttcacgtgga taaaaaaagt gtctcttggg cgtttgatac aaagtgagtt aagatcgagc
    15121 tttacagagc ggctgctatt gaaatcccga taaagcggaa tcggctgata agctgccgtt
    15181 tgatctgaaa tttgtctaat tgaagccata gtaaaatcct ctatctgttt ttttatacag
    15241 ggtattttac tggctaaaat accagtgtca accattattt tggaattttt tgtaaattta
    15301 accagtgttt tgaccgcttg ttatccttta aaaagcaata aaaaagcacc catagggtgc
    15361 ttcttatgct taaaagctgt tattataggc tttcagtgaa tgtacgagta ataacatcgc
    15421 gttgttgctc aggggttaat gagttgaaac gaactgcata acctgaaaca cggatcgtta
    15481 attgaggata tttctcaggg ttttgaatcg catcttctaa tgtttcacgg cgtaaaacgt
    15541 ttacgtttaa gtgctgacca ccttcaactt taatcgttgg tgcaacatta acgggtactt
    15601 cacggtatgc gatatcacct aattcgctga tagcaacaac ttgatcttct tcaaatcctg
    15661 cttttgcagc taaacaacga gcttcatttt tagcttcgtc taataaccag aaagagttta
    15721 ataagttgct gtttgatgat tctgtgattt gtacaccttt aatca
//
LOCUS       DANMGB010000049        14636 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.049, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000049 DANMGB010000000
VERSION     DANMGB010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14636
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.049"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            144..1589
                     /gene="aldA"
                     /locus_tag="PXG19_001140"
     CDS             144..1589
                     /gene="aldA"
                     /locus_tag="PXG19_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL6066446.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            1845..2492
                     /locus_tag="PXG19_001141"
     CDS             1845..2492
                     /locus_tag="PXG19_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL6066447.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(2625..4001)
                     /gene="trkA"
                     /locus_tag="PXG19_001142"
     CDS             complement(2625..4001)
                     /gene="trkA"
                     /locus_tag="PXG19_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL6066448.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(4001..5332)
                     /gene="rsmB"
                     /locus_tag="PXG19_001143"
     CDS             complement(4001..5332)
                     /gene="rsmB"
                     /locus_tag="PXG19_001143"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL6066449.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(5384..5809)
                     /locus_tag="PXG19_001144"
     CDS             complement(5384..5809)
                     /locus_tag="PXG19_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6066450.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(5902..8550)
                     /locus_tag="PXG19_001145"
     CDS             complement(5902..8550)
                     /locus_tag="PXG19_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL6066451.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(8752..9714)
                     /locus_tag="PXG19_001146"
     CDS             complement(8752..9714)
                     /locus_tag="PXG19_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL6066452.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(9898..11745)
                     /gene="selB"
                     /locus_tag="PXG19_001147"
     CDS             complement(9898..11745)
                     /gene="selB"
                     /locus_tag="PXG19_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL6066453.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(11755..12051)
                     /locus_tag="PXG19_001148"
     CDS             complement(11755..12051)
                     /locus_tag="PXG19_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6066454.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(12048..12224)
                     /locus_tag="PXG19_001149"
     CDS             complement(12048..12224)
                     /locus_tag="PXG19_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066455.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(12293..12925)
                     /gene="pdxH"
                     /locus_tag="PXG19_001150"
     CDS             complement(12293..12925)
                     /gene="pdxH"
                     /locus_tag="PXG19_001150"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL6066456.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(12983..14365)
                     /locus_tag="PXG19_001151"
     CDS             complement(12983..14365)
                     /locus_tag="PXG19_001151"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL6066457.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            14433..14527
                     /locus_tag="PXG19_001152"
     tRNA            14433..14527
                     /locus_tag="PXG19_001152"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14467..14469,aa:Sec,seq:tca)
BASE COUNT         4163 a         3289 c         2922 g         4262 t
ORIGIN      
        1 ttgctttttt atcgccaaga aatgtgattt tgttcacatt tatatctata aattaacaaa
       61 aataaaacaa tttgtttgca aaggcggttc agttaccgaa tgatagtcat caacttccac
      121 tgtggataaa aaaggagcaa ctcatggtga aacaacataa aatgtatatt aatggtgaat
      181 ttgtgcctgc gttagatggt cgcactttag cagtctataa ccctgccacc gaaaaagcta
      241 tctccgaagt ccctcgtggc ggagctgatg atgccaaaat cgctatcgat gctgctgaag
      301 ccgcccaaga agcttgggaa cgtttaccag cgattgaacg aggaaaatat ttacgtcaaa
      361 ttgctgtggg gattcgtgag cgtgccgatg aaattgctcg cactatttcc gaagaaatgg
      421 gtaaaactct gtccttagca accgttgagg tacattttac cgctgactac ttagactata
      481 tggcagaatg ggcgagacgt tatgaagggg aaattatcca aagtgatcgc ccaaatgaac
      541 atattttcct atacaaaaaa gcgattggcg tcaccaccgg cattttacct tggaacttcc
      601 cgttcttcct cattgcccgt aaagcggctc cggcattagt aacaggtaat actattgtga
      661 ttaaaccgag tgaagatgca cctaataatg cgattctctt ttcggaaatc gtgcatcaag
      721 tcggtttacc taagggggta tttaatgtcg tcaccggcta tggcaatgaa gtcgggccgg
      781 aactttcagg caatgaaaaa atcggtatgg tttcctttac cggtagccag tttgccggac
      841 aaaaagtgat ggaagccgcc agcaagaata tcattaaagt caatttggaa ttgggcggaa
      901 aagcaccggc tatcgtatta gacgatgcag atcttgagct tgctgctacc gctgtagtaa
      961 attctcgaat catcaattca ggacaggttt gtaactgtgc agaacgcatt tatgtacaga
     1021 gttcaattaa agagcaattt gtccaaaaat tggtagagaa aatgcaagcg gtgaaatatg
     1081 gtaatccatt agaacaacaa gacattgata tggggccgat ggtaaatgaa aaaggcttgc
     1141 ataaagtgca ggaaatggtg acacacgcac tgcatcaagg aggtaatctg gtattaggtg
     1201 gtaacgtggt tgaaggaaca ggctactact ttgagccaac tattatcgac aatgtagata
     1261 actctatgga tattatgcgt cacgaaattt ttggtccggt cattccggtt gcgacatttg
     1321 ataccattga tgaagcgatt cgcttagcca atgattgtga atatggctta acctcttcgg
     1381 tttacacgca aaatatcaat aaagcgatga aagtaatttc ccgcttaaaa ttcggagaaa
     1441 cttatgtaaa ccgtgaaaac tttgaagcaa tgcaaggcta ccacgccggt tggcgtaaat
     1501 cgggtattgg cggtgctgac ggtaagcacg gcttagagga atacctacaa actcaggtgg
     1561 tttatctgca atttgatgat aaagtataga ttcttctaaa aactcccact tatcaaaata
     1621 agcgggagtt ttcttttagg ttaaccttgt atcaaaattg caaacaaaaa tattctaatg
     1681 ttaagtaaat gtttaataat tatttatggt taactctttt tggctaatta atttgcaatt
     1741 taaattaatt gagtgcagaa tgccattagc cttttttgaa atcacattcc ataaaatggc
     1801 ttgattaaca caacacaatt atcactcaaa ttaggatttt cattatgagt attttccaac
     1861 aaaccaatcc aaaccgccgt cgttatgggc tagctgtatt tatcgggatt attgccggta
     1921 ttatttcagc attcgtaaaa tggggggcag aacatccttt cccacctcgt agccctatcg
     1981 atctgtttac cgctgcttgc ccgcaacctg tgttagatgc aatgaatgcc gcagcagacc
     2041 aagtggctgc caaaaccatc gcattacaag aatgttcacg tgcattttta aacccaccac
     2101 acgttttctt acgtgattat attggtatcg atccaactga agcagcattt acctttgctg
     2161 accacgcgtt caactggatt ggtgtcaccc atatgatttt ctcgttagtc tttgcgattg
     2221 gttactgcat tgtggcggaa atcttcccaa aaattaaatt ctggcaaggt atcggtgccg
     2281 gtatcatcgc taatatttgt gttcactaca tcaccttccc ggcattaggt ttaacaccac
     2341 cggttgctga atggccgtta tatgaacaca tttctgaatt agttggtcat attttctggt
     2401 tctggaccat tgaggtgatt cgtcgcgatt tacgtaaccg tattacgcgt gaacctgatg
     2461 ccgaagtgcc gttagatcaa ccgttccgtt aatttaaaat tagctcgatt tatacaaaag
     2521 ccgcaatcac gttgcggctt tcttatttta caagcggtca aattttcatg aaaatttacc
     2581 aaacaaaaag cacattgttt catgtagcaa tgcggagctt ggctttataa gaaaaataca
     2641 ccaagttgga acagtttttc aatttcatcg atctgtttct tatcgttcac aaaaataatc
     2701 acacggtcat tttctgcaat catggtggat ttgtgggcga taataacttc ttcgcctcgc
     2761 accaccgccc caacaattgc cccttgcggt agttttaatt cacggatttg tcgtccaacc
     2821 acttttgaag tggttgcatc gccgtgagcg ataatttcta ccgctcctgc aaccccaagt
     2881 ttgagtgaag aaacttgtaa aatatcgcct tttctaacgt aactagcgag agcagaaata
     2941 gtagcttgtt gtggggaaat ggcaatatca atagtgccac cttgaatcag gtgtaaatag
     3001 gcagggcgtt gcactaaaat aatcactttt ttcgccccaa gccgttttgc cagcagggcg
     3061 gacataatat tcgcttcatc atcactggtg acggcaagga ataaatcaat attctcaata
     3121 tgctcctcaa acagcaactc ttcatcggag gcatcaccgg taagcaccat cgttttagat
     3181 agtttttctg ctaatttttc ggctcgaacc ggattgcgtt cgataatttt tacccgatac
     3241 tgatcttcta aatcccgagc taacgaagag ccgatgctcc ctccaccgac aatcataatc
     3301 cgcttatgtg ggcgatcaag ccgttgtagt tcactcatta ctgctcgaat atgttgggtt
     3361 gcacagatga aaaagacttc atcacctgcc tcaataatag ttgaaccttg tggcacaatc
     3421 gctttgtctt ggcggaaaat tgccacgacc cgagcatcaa tatgcggtaa atgatcacgc
     3481 agggctgaaa tcgggtaacc gaccaaaggc ccaccgtaat aggcttttac attcacgata
     3541 ctgactaact catcagcaaa atgagtaatt tgcaacgccc ccggatagtg aataaggcgt
     3601 aaaatatctt ctttgactaa aatttcaggg gcaataatat ggtcaatagg caatacatca
     3661 tcattaaaca accgctctcg ttctctcaca taatcagcac tgcgaatacg ggcaattttg
     3721 gtcggcacat taaataaagt gtaagcaatt tggcaagcga tcatattcac ttcatcacta
     3781 ttagttacag caactaatag atcagcatca cctgcaccgg catcacgcaa ggtttgaggt
     3841 gaagcatatt cgccccgaat cacctgtaaa tcgtgtttat ctttgagctt gtctaaacga
     3901 gttgggtcat tatccaccaa gacaatatca ttgtcttcac tcaccaaatt ttctgccagc
     3961 gtagaaccaa cttgtcctgc ccctaaaata attactttca ttactctgcc actttttgta
     4021 gttttgcgta gaagaaacca tcaccaccgt ttggttgtgg gaagaactgt ttttctaaca
     4081 ctttttcgcc gttaaaatcg atttcaagtt gttttgcatt cggtgtatct tgtaaaaacc
     4141 gttgaatttg ctcgctattt tcttgcggta acaccgagca agtggcatat aacaaaatgc
     4201 cgtttggctt taacctttgc cataacgcct tgagaatctc accctgtaat gtggctaatt
     4261 ctgcaatatc accctcttta cgcaaccatt taatatcagg gtggcggcga atgactccgg
     4321 ttgcggaaca aggggcatca agtaaaatgc ggtcaaacag cacaccctct tcaagccatt
     4381 cctcaggttt ggaagcatcg ccacaaatta cctgtgcaat ctgccccagt cggactaagt
     4441 tttcacgcac tcggcttaaa cggctctctt caatatccaa cgccataacc tttgctttcg
     4501 gtgctttttc taaaatatgg gtagttttgc cacccggtgc ggcacaggca tctaaaacgg
     4561 tttcaccatt ttctgccccg agcaactccg ctgaccattg tgcgtgagca tcttgcacgg
     4621 ttgcccaacc ttgctcgaaa tgtggcagtt ggttcacatt taccgctctc tccagcaata
     4681 aagcacactt tggcacgcaa gcggtcggat tttctgaatt ttttgcaaat tcaggctcaa
     4741 ccagctcgct aatcaacgcc gcataatcat tggtcttgat atgttgttga ttgactcgaa
     4801 tccacattgg tgggcgttgg ttgtttgctt caacaatttc tcgccagttc ggataggctt
     4861 ttttaagttt attgaccaac cattcagggt ggagcgtttg ccaatgttta tctaccttcg
     4921 ctaagatttc ttcttgctct cgcagaaaac ggcgtagcac accgttagtc aaggctcgga
     4981 agctatccag ttttagcgtt ttagttgcat tcactacctc atcaaccgca gcgtgtgccg
     5041 gcactcgcat ataaagcagt tggtataaac ccactaacag taagcaatgc accaaacggg
     5101 ttttgccttt cagcggtttt tcaactaata atttgatgat cgattccaag cgaggcagca
     5161 cacggcacac tccgaaggtg atttcttgca ctaagggtaa atcttttggt tcaagctgtt
     5221 tttgagcgtc aggaatcaag gtggaaagtg atttaccttg atctaacacc tgtaaaataa
     5281 tggttgcact tattgctcta gaagaaagtg ctttgaacga ttgttttttc ataaataaaa
     5341 atgccattcc gacagaatgg cactattgta actgaatgcg ggattatctt aaaactaaaa
     5401 ttggcttggt ggtgttgcga gccactttaa ccgtattaga gcttaagccc ttcgcatttg
     5461 gtttgctgct tgccagcatc ataattaaat ccaccgactt ttcatcggca atacggcaaa
     5521 tttcttcata aatcgtacca tacgccacaa tgtgctgcac ttttgaacct tcaggaaaat
     5581 ggtttttggt aaattcgtgc aatttttggt ttgcttcagc caccacttct ttatcgaaat
     5641 ttttcggcaa gaatgcagaa attaagctgt tatccaccgg ctcaataata gacacaaccc
     5701 gataaaccgc attcggattt tttgccgtca tttgtaatgc cgtatctacc acatatttag
     5761 cactttttag gtcggctaaa tcaatcgcaa taagtaattt gttatacata tttattccgt
     5821 aggggcaggt cctgtgcctg cccgaatatt aactaaaata gcggacgggc acaggacccg
     5881 tccctacata gcatataaat actatgcaat aacacactgt tttttcactc tacggcgttg
     5941 gtttgccaca ataccaaata ccaacaatag agcaggaatg aagatccaat ctttagaagg
     6001 agcatcttgc ggtacggcaa tgtagtgaat ggtttgatcc cagtttaagc ctgctttagc
     6061 tgccggagaa tccatttcta ccatatcaat caccactttt ggtgtttcta cgccatcaac
     6121 tttgattttt tcatcggttt gaattagcgt taagcctaag tttttcaaac gctcttcgcc
     6181 ggttgctcct tccggtacag gtaattgagc gtagaactca atttctttac cgtaagggtt
     6241 taatccctct acttttaaag taacattttg acctactttg cttgcaagca actgttcttc
     6301 aaactgcacc ggctcgatat gacgttcaga cggataaatt ctgtccataa agaagcccgg
     6361 acggaacaag gcgaaagcgg ctacaaccag caacgccgtt tcccaccatt tgtttttagt
     6421 cacaatatat tgcattgtag cagaggtaaa ggcgagaacc ccaacagttg cggtaataaa
     6481 cacaacccag ccgtgccccg gataacgcag atcaattaat aataaatcgg tattaaaaat
     6541 aaataagaac ggtaaaatga cggttcttaa actatattta aatgccacca taccggtatt
     6601 aatcgggcta ccgcctgaaa ttgctgccgc agcgaacgag gctaaaccaa caggtggagt
     6661 cacatctgcc ataatcccaa aatagaatac gaataaatgc accgcaatca acggcacgat
     6721 taacccgttt tgacgaccga cttccatgat aaccgttgcc attaatgatg acaccacaat
     6781 gtagtttgca gttgtcggta agcccattcc caaaattaag ctgaatacgg ctaccaagat
     6841 caacattagc acaatgttgc ccattgatag gagttcaatc acacttgaaa gctgaacccc
     6901 aaagcccgtt agtgccacaa cgccgacaat aatccctgct gttgcggtag cgagggcgat
     6961 accggtcata ttacgaccgc cagcctcaag gctatctacc acatctcgaa caccttgttt
     7021 gataatctct ttggttacgc tctctttacg gaagaaattc agtaacgggc gttgggttaa
     7081 ttgaataaaa attaaggtaa tggttcccca gaatgcggat aagcccggcg aaagcatttc
     7141 caccattaag caccaaagta gcacaaccac aggaataagg taatgtaaac ctgcatttac
     7201 ggttggtttt ctttttggta gagaaacaat ttctgagttt ggatcgtccg cttctaaatc
     7261 agggtagctt gccacacggc gaatagccag tagataccat aagcctaaga aagcacagac
     7321 aatcataaac gcataatctt ctgccacatc acgaatccaa cctaagccgt agtaaacgcc
     7381 aatcgctaat cctacgatca ctaaaattga agctacggtt cttagcaaga agactaaaat
     7441 cgggcttggc tcttcggctc ttggtaagcc ttgtaaattc atcttacaag cttctaaatg
     7501 cacgatatac accaacgcaa tatacgaaat taacgcaggt aagaaggcgt gagtaatcag
     7561 ctggctatac ggcatattca catattcgat catcaagaac gctgcagccc ccattaccgg
     7621 tggcataatt tgaccgttta ctgatgaggc aacttccacc gcaccggctt tttctttggt
     7681 aaagccgacc cgtttcatca ttggaatagt gaatgtacct gtcgtcacga cgtttgcaat
     7741 cgaagagcct gaaatcaagc cggttaaagc ggaagaaacc accgccgctt ttgccggacc
     7801 accacgcaaa tgccctaaat aggcaaaggc ggttttaata aagtagttac ctgctcctgc
     7861 tttatcgagc aacgccccaa ataatacgaa caggaacaca tatttggtcg aaaccccaag
     7921 ggctacacca aacacgcctt cagtggtaat ccattgttgg ttgataattt gagaaagcga
     7981 acctgagcgg tggcttacaa tccaatctgc cgggaaatat tgcccgaaga agttatagat
     8041 caggaataca atcgcaataa tcacaagcgg taagccaaga ctacggcggg tcgcttccag
     8101 caccaataaa atccctaaac agccggcgat aatatcttgc gtatttggcg ctccaaaacg
     8161 tttcaccaaa ccttcataga agaaaatata atacaacgct aacccagctc ctacgatggc
     8221 aaacacccaa tctattttag gaatatgatg tttaggcgag ctggcaaaag cagggtaaga
     8281 taggaacgcc aagaacattg caaaggctaa gtggatagaa cgggctttgg tgtcgtccac
     8341 caccacattc aaattaatgc ctgcgtgagt aagccattct tggaatacaa acggcaatgg
     8401 agaagcataa taaatttgga acacagacca aagaatggcg acatacacaa tggctttttt
     8461 cgcaagaccg gacggggttc gccccccact gtcattggag gcaaccatat cttgtaggtc
     8521 atcgtaatca accttagatt caactgacat aaagactcct caaaacgcaa gcggtcattt
     8581 tcttattaaa ttttacaaat ttcctcaaaa aacaaccgct tgctcgtgaa aacactgttg
     8641 ataagttatc aattaaaggt gaaaatcgat aacttatcaa cagtttcaaa aaagcaaaaa
     8701 accagcacgc taaaaaacgt gctgattgaa tcaaattaca gaaaggaaat attacttaat
     8761 ccaacctttc tctttatagt aacgaattgc accttcgtgt aacggagcag aaagggcgtt
     8821 tttgatcatc tcttcttgtt ttaagtgttc aaacgccgga tgtaaacgtt tgaaacggtc
     8881 gaagttatca aataccgctt tggttacatt gtacacttta tctgcatcca catcggcaga
     8941 agtcactaac gttgcatata caccgaaggt ttctgtcggc tcatccgaac ctttatataa
     9001 accgcccgga atcgtagctt tggcataata tgagtgatct gccactaatt tatcaatttc
     9061 agggccggtt accggcacta atttcgcatc gcaagaagcg gctgcttctt ttaacgcacc
     9121 attcgggtga cctacgttat aagtgatggc atctaagttg ttatcacaca ttacagatgc
     9181 catttctgcc ggtttcaatt cagaagccac tttgaaatct ttatccgtcc agccttttgc
     9241 cgctaaaatc acgttcattg ttgcacgagt accggaaccc gggtcgccca cgtttacacg
     9301 ttttgctttt aaatcatcga acgatttaat gcctgaatcg gtacgagcca ttactgtaaa
     9361 cggttccggg tgaagcgaga aaatggcacg aattttatcg tttttcttac cttcaaatga
     9421 gcttgagccg ttataggcgt ggtattgcca gtctgattgt gcaatcccca tatccatttc
     9481 ttttgctgca atcgcattta agtttgcaac cgatgcccct gttgaaggag cgttacattt
     9541 taaacctgtt tttgctgaat cacggtttac taattggcaa atagattgac ccacaacata
     9601 ataaacaccg gtttgaccgc ctgttccgat agtcacaaat gtttcagccg cttgaacaga
     9661 tgctgttccc atcacaaggc ttgcaaggaa agaaagtttg actaattttt tcatttttaa
     9721 ctcctaaaat taaggatcag aaaacaaaga tttattgttt tgagccactg ctcacactac
     9781 aagagataca aaacttcttt gagttgcatt tgcctcttag agcttgtttt tagcatagat
     9841 tttataatta gtaaatttat tttttcgcat aaaaaaatct atgcctaatg ccacaagcta
     9901 aaatgtttca ctatctctta acaaatgcac atcgcctttt cgtcttaaaa aaccgctacg
     9961 atcaaaatat tcaattaatt gtaccgtcaa ttttcgccca tactgcaact catctcgcaa
    10021 ctggttcacc gaaatgctgc cgttttgggc gataaaatct ttaattaacg ttgcaaattg
    10081 cccgatttgt tcgcttaata aaaatctatc tttgacgatt gggattaaat agcccaattt
    10141 cccgacttta tacagcaaat tccgcatttg ggtttcatca atcgagagct ggcttgcaat
    10201 atccctcacc caaagagctt gattggttgc ctcaaacagc ggtcgaattt gttgccaaat
    10261 ttgcaattca tcggcgttca attcgattcg atgttccggc aaatgtaacc aaccacgact
    10321 attgaccaag gctttttgct ccaccaaatc ctcaataaat tgatttgcca agttttcagg
    10381 caaatccaat aacgctatgc gatataaacg agctttggtc acgccgattt gatcttgatg
    10441 ttgcaggtgg tattctgcca ttttttccaa cacccgttgc tgggcttgag ctttaaaatc
    10501 cgaattaaat aaccatttag acgagacatc aaaccccagt tttgcaatat cctctgcaaa
    10561 acattgctcc gcccataaca gcaaggataa atccatcgct ctgttttgca gatagagatc
    10621 aaggcgtgtc gcaaagtcat tacaagcggt ggtttttgct aaatttttta ccaaagctaa
    10681 acgggcttcg gtacgtttat gccgttttgg tgagtgaatt tccagcacct ccgctccggc
    10741 taacgttagg ctgtcatcac cgctgcggat gatcaactta tcaccaacgg caatatgaag
    10801 tggttcatct aaaatcactt ctgcaaaaaa ttgctgattt ttgaccgctt gttgcccctc
    10861 aagcaaattc aatttgccgg taatgtgcga agcaaaatgg taaagatgca caatgctgtt
    10921 ttctttgaag gcttgattgg cagtgagttg aaccgtaatg cgatcggtgg caaatttcgg
    10981 ctcaagctcg gtaatccaat cgcctcgctt gatttcctct ttttccacgt tagcgatatt
    11041 taacgccaaa cgttgccctg ccactcccgt ttccgaaggc gtattttggg cgtgaatcgc
    11101 tttgacccgc acttttttac cattcgacaa aaataactca gagccaacgc tcacttttcc
    11161 cgccaccgtt gtgccggtaa cgaccaaccc tgctcctttc acattaaaca cacggtcaat
    11221 cgcataacgg aacggtttat gggtttgggt atgttgttga tttaattgaa ttaaatgtgc
    11281 ttttaattct tcaatccctt gttgcgtttt tgccgaagta acaaaggttt ttgcttccgc
    11341 taaaaacgga tagcttgttt tcacttgctc aattaagtgg ctgatttgag tttcttccgc
    11401 ccgatctgcc ttagtaatca caatcataat atgctggaaa ttcagcaggt ggagaatatc
    11461 caaatgctct tcggtttgtg gcttaatccc ttcttcggca gaaatcacca acagggcgtg
    11521 ttgaatgccg ccaagccctg ccagcatatt agataaaaaa cgctgatgac ccggcacatc
    11581 aataaaccct aaaatatcgt tctcaatcgg taaataggca tagcccaaat caatggttag
    11641 cccacgtttt tgttcttcgg gcaaatgggc ggtgttagtg ccggttaagg cttgtaaaag
    11701 cgatgttttg ccgtggtcaa cgtgaccggc ggtgcagatg atcattgata gtccttataa
    11761 aaatgagtaa ctattctggc gagcagattt aaaatctaca atatagacat tttcctgacc
    11821 aatcaggaac tttacttggt acttaccgtt taaaatggga atttcttttt tcttgcgaag
    11881 tcgataaaca tcggcagtaa aggaaagttt atccacttca ctttttattg catcataaaa
    11941 ttgttctgca ataatcgggt tttgggattg ttgtaatata taatctgctt gataaaacaa
    12001 ttttatttct gctttctgta gccaaacaat attgtaatca aacttcatca tttttccgtg
    12061 attcccaatt ttttgcgtaa atcttccatc acctgagcgt gggatttagt ttcaattaag
    12121 ccattttcta attgatgtaa taaatcaagt tcatcattag tataaaaact ttgtggctta
    12181 tctgtgcgta attttgctaa atcttgtgcg agtatgagtt ccatatttcc cccttacaaa
    12241 cttagattat tcaatattgt aacctgataa aactaaagtt caaggagtgt atttaaggcg
    12301 ataaccgctc ttttttccac tcattatttt ccaaccaata atgaatgcgg tcgtgtagcc
    12361 ggctacttct gccttgccag agttcaatac tgtcgggaat cagaatatag ccaccccaat
    12421 gcggtgggcg aggcactgaa agtggatatt tcaatgcaaa ttgagctgat tttagcaaca
    12481 aagccttgta gttttcgata ggctgactct gctcgctcgc ccaagccccc aaacggctgg
    12541 tgtaaggacg agagtcaaaa taggcatcgg attctgcctc tggaattttt gctattttcc
    12601 cttcaatccg cacttgacgt tgtaattctg cccaaaagaa ggttaaacat ccaaaaggat
    12661 tatcggcaat ttcccaccct ttacggcttt gataattggt aaagaacaca aagccttgtg
    12721 aatttacctc tttcaacagc accattcggc tacttggtcg cccgtttgct gcaacggtag
    12781 caatattcat tgctgtcggc tcattcactt tggcattgat tgcctcactc aaccattgtt
    12841 caaattgggt gattgggttt gagtgacaat ctcggattga aagcactttt ttggtgtaat
    12901 cttctcgaat gtggtgcaga tccataagga ttcctttatc ttattctaaa taatcggaca
    12961 ggcacagtct gccctaccaa aattaatatt ccaacatctc aatcaactta tcaaactccg
    13021 cgaccgagcg taaatctaac caaaatttct gctgagcaaa acgcccgata atcgggcttg
    13081 ggtaggtttt aaattgttgt tccaatgcaa ttaaatcgct ctgtttttca gcggaaatag
    13141 tcactgccac cgaaggtaag gtttctgtgg gtaacgcacc gctgccgatt tgagcgaggc
    13201 ttagctcaat ttgcaaaata taagcagaat ttaaccgctt gtgtagtgcc tgttttaatc
    13261 gctctgcttt gtgttgcaag gtttcaagcg gttgagtgag taaatgaaga gtcggcaagt
    13321 tatcggttaa ttgctccgga aataagtagt ggcgtagcgt tgcctcaagt gccgataaaa
    13381 tcactttatc gcaacgtagc acccgtttta gcgggtgttg ttgcagttgg ctaatcatcg
    13441 cttggctacc gacaataatg ccggcttgcg gcccgcctaa taatttatcg ccagagaagg
    13501 aaaccaaatc taccccagcc gctacttttt gctgaacctt tggctcagca ggcaaattaa
    13561 gagcttgcat atcagttagc gaaccactgc ctaagtcggt aatcacaggc aggttaaact
    13621 ctttaccgag agccaccaat tcctcttccg acaccgaact ggtgaacccc tcaatgtggt
    13681 agttactggt gtgaactttc attaaaaagg cggtattttc ggtgatcgcg ttgcgataat
    13741 cctttaaatg agtgcgatta gtcgtaccaa cttccaccaa tttgcaaccg gcttgagcca
    13801 taatatccgg aatgcggaat gccccgccaa tttccaccag ctcgccacgg gaaacgatga
    13861 cttccttgcc ttgtgcgaag gttgctaaca tcaacaacac cgctgccgca ttattattca
    13921 caatgcaagc ggcctccgct ccggtaagta tttgcaacaa ctcggaaatg tagttatctc
    13981 ggtgcgagcg cttgcctgct tcaatatcaa attccaacgc cacattgttt cgcattgcgt
    14041 tggttgctgc ctgtatcgcc ttttccgacc acaacccacg ccctaagttg gtgtgtaaca
    14101 ccgtaccggt taagttgaac acggaacgga ttttcacctc actcaacgct tgcacttttt
    14161 gttccagcct tataaaaaac aggttttcat cggcaataaa atccggcaag gcttgctgtt
    14221 gggaaataaa ttgacgtgct tgagtaagca aactcctagc ttgttcagcc acgctggaat
    14281 atgcaaattt ttggcataat tcgaccgctt gtggcttttt caacaagagg tcgagcgagg
    14341 gaatttggcg aaatagttgt tgcataatgt gaatgattga gagaatattt tggacaattc
    14401 taataaataa agtacaatat tgccaatttt tcggaagtgc gtcatctccg gtgaggtggc
    14461 aggacttcaa atcctgttga ggacgccagc gttctcgggt gggttcaact cccatgcact
    14521 tccgccacat ttcaaaagcc gttaatcttt aacggctttt tgcatttctg ccacattctc
    14581 tctttccgtt ttgataaaaa atgagactta gctcacattt ttttattttt ctgttt
//
LOCUS       DANMGB010000050        14556 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.050, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000050 DANMGB010000000
VERSION     DANMGB010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14556
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.050"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            12..1520
                     /locus_tag="PXG19_001153"
     CDS             12..1520
                     /locus_tag="PXG19_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6066458.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1520..1618
                     /locus_tag="PXG19_001154"
     CDS             1520..1618
                     /locus_tag="PXG19_001154"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL6066459.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1666..1929)
                     /locus_tag="PXG19_001155"
     CDS             complement(1666..1929)
                     /locus_tag="PXG19_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL6066460.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2089..3423
                     /gene="srmB"
                     /locus_tag="PXG19_001156"
     CDS             2089..3423
                     /gene="srmB"
                     /locus_tag="PXG19_001156"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL6066461.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3492..3785)
                     /locus_tag="PXG19_001157"
     CDS             complement(3492..3785)
                     /locus_tag="PXG19_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6066462.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3787..4449)
                     /locus_tag="PXG19_001158"
     CDS             complement(3787..4449)
                     /locus_tag="PXG19_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6066463.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4433..4885)
                     /locus_tag="PXG19_001159"
     CDS             complement(4433..4885)
                     /locus_tag="PXG19_001159"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL6066464.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(4905..5543)
                     /locus_tag="PXG19_001160"
     CDS             complement(4905..5543)
                     /locus_tag="PXG19_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL6066465.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(5587..5856)
                     /locus_tag="PXG19_001161"
     CDS             complement(5587..5856)
                     /locus_tag="PXG19_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL6066466.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5948..7057
                     /gene="mobA"
                     /locus_tag="PXG19_001162"
     CDS             5948..7057
                     /gene="mobA"
                     /locus_tag="PXG19_001162"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6066467.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7112..11623)
                     /locus_tag="PXG19_001163"
     CDS             complement(7112..11623)
                     /locus_tag="PXG19_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6066468.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11807..12811)
                     /gene="fbp"
                     /locus_tag="PXG19_001164"
     CDS             complement(11807..12811)
                     /gene="fbp"
                     /locus_tag="PXG19_001164"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL6066469.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            12935..13726
                     /locus_tag="PXG19_001165"
     CDS             12935..13726
                     /locus_tag="PXG19_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6066470.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13794..14483)
                     /locus_tag="PXG19_001166"
     CDS             complement(13794..14483)
                     /locus_tag="PXG19_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL6066471.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
BASE COUNT         3914 a         2984 c         3247 g         4411 t
ORIGIN      
        1 aggtatttac cgtgtctaat caatcatcaa acgcaccgca aagagaaacg ttctccggac
       61 gtggtgcatt tattatggcg gctattggtt ccgctgtcgg cttagggaac atctggcgtt
      121 tcccttatac tacttatgaa aacggcggtg gggcttttat tctgccgtat atcattgccc
      181 ttttgaccgc aggtttaccg ctgctgttct tagattattc tatcgggcat aaatatcgtg
      241 gtggtgcacc gctcgctttc cgccgtttca gctcgaaatt tgaaaccttc ggttggtggc
      301 aagtgctgat caacgtgatc atcgggattt attatgcggt ggtactcggc tgggcagcaa
      361 gttacaccta cttctcattc agcggagcgt ggggcgataa accggtggat ttctttatcg
      421 gtgaattctt aaaaatgggc gatattactc aaggcgtgag ctttgaattt gtcggtatgg
      481 ttacagggcc gttaattgcg gtatggctga ttgctattgc tgtgttggct atggggatca
      541 aaaaagggat ttctgctgcc tcaaacctgc taatgccgca gttgatcgtg atgttcttag
      601 tgttggtcgg ctattcatta accctaccgg gtgctgcgaa aggcttagat gcgttattta
      661 ccccaaactg ggaaaaattg gctgatccaa gtgtgtggat tgccgcttac ggtcaaatct
      721 tcttctcact ctctatctgc ttcgggatta tgattaccta tgcttcatac ctgaaaaaag
      781 aaaccgattt aaccggttca ggcttagtgg tgggttttgc gaacagtggt tttgaattat
      841 tagcgggtat tggcgtattt gcggcactcg gctttatggc aacggctgca gggcaagaag
      901 tgaacgaggt agcaaaaggc ggtatcggct tggcattctt cgctttccca accattatta
      961 accaagcacc aatgggggca ttagttggcg tgctgttctt tggttcactc acctttgcgg
     1021 cattaacctc atttatctcg gtaattgaag tgattatttc agcggtgcaa gacaaactca
     1081 attcaggtcg tgtgaaagcc acgctactag tcggcattcc gatgatggtg gtatctgtct
     1141 tgctattcgg tacaaccacc ggtttaccaa tgcttgatgt gatggataaa ttcgtaaacc
     1201 aattcggtat tgttgcggtg gcgtttgttt ccttgattgc gattgtcacc agcgagaaat
     1261 taagcaccct tgaaaaacac ctgaacgaag tttcttcatt caaagtcggc tttatctggc
     1321 gtttatgtat cgttattacc tccggcgtac tggcatttat gttattcagc gaaatcgcca
     1381 aagtgtatcg tgaaggttat gaaggctacc caagctggtt tgtaaacacc ttcggctggg
     1441 gaatggcaat cggcttagtg gtggtggctt atttgctatc aaaaatggcg tggaaaaatg
     1501 aaccaaaagg agatgagtaa tgagttcagc agcaattatt accatggtgg tggcaatgac
     1561 gattatctgg ggcggtttac tttttgcgat taaacgtctg ccgaaagaag aacaataatt
     1621 tgcaaatttt tgtataaaaa agcccgcttg ttagcgggct tttggctata cggtaatccc
     1681 aaatttctct tccacaaagg cttggaaatc ggtgcaaccg ccaacgtggt tattatccac
     1741 aaaaatttgt ggtacagttg caaccggctt gccaacacga ggctctaggt cttgttttga
     1801 aatattttca gcgatcatat caataaattt aaaatcaaaa tcgcttaatt cttgtttcat
     1861 tttctcggct aatgtttttg cacgcacgca gtatgggcaa gataaacgtc cataaatttc
     1921 aacaaacata taatgttcct tctataaagt aaaagtgagc gaattgtccg ttaaacggct
     1981 ctgtgtaagt gtaacaattt tttcaacctt ttaggataaa tttcttcacc atcacggcaa
     2041 gcagttaatg tgatatactg gggcaaattt acaagtagag aaacagagat gacccaatta
     2101 atgacgtttg aggagcttga tttaagccct caattactta aagccttagc acacaaaggc
     2161 tataaccgcc caaccgctat tcaacaagcc acgattccgg ctgcgttaga aggacgtgat
     2221 ctgctcggtt cagcccctac cggtaccggc aaaaccgccg cttttttact gccggcaatt
     2281 cagcatttat tagattatcc tcgccgcaaa ccaggggctc ctcgcatttt aattcttacc
     2341 ccaacccgag agctggcaat gcaggtggcg gagcaagccc aagcactggc taaatttact
     2401 cagttgagca ttgcgactat taccggtggg gtggcgtatc aaaatcacgg tgaagtcttt
     2461 aataaaaatc aagatattgt ggttgctacc ccgggtcgtt taatgcaata cattaaagag
     2521 gaaaattttg actgccgagc ggtggaagtg ctgatttttg atgaagcaga tagaatgttg
     2581 caaatgggct tcgggcaaga tgcggagaaa attgcggcag aaacccgttg gcgtaagcat
     2641 acttggttgt tttcagcgac cctcgagggc gagttattag aggattttgc cgagcgatta
     2701 ttaaatgatc cgattaaagt cgatgccgaa ccaagtcgcc gtgagcgtaa aaaaattcag
     2761 caatggtatt accacgccga taatgtagag cataaaacca aattattagc tcgtattatc
     2821 agcgaatttt cggtggaaag agcgattgtg tttgtccgcc gccgagaaga tgtgcgagaa
     2881 ctcagcgaaa ccttgcgtaa gcggggaatt cgttctactt atctcgaagg tgaaatggct
     2941 cagacccaac gtaaccaagc tattaaccgt ttaaaagaag gcgtagtgaa tgtgttagtg
     3001 gcaaccgatg tggcggctcg aggcattgat atagacgata ttgatttcgt gctgaactac
     3061 gatttacctt atagtgcgga tacttacttg caccgtattg ggcgtaccgc tcgtgctggc
     3121 aaaaaaggtt cggcaatttc attggtggaa gctcacgatt ataaattact cggcaaaatt
     3181 aaacgttaca ccgaagaagt actaaaacct cgcattatcg agggcttaga gcctcgcacc
     3241 aaagccccga aagatggcga gctaaatgtg accagcaaga aagaaaaagc acgcattaag
     3301 aagaaaaaag aggcgaaaaa agaagcggca aaaccaaaag taaaagtccg ccacaaagat
     3361 accaaaaata tcggtaaacg gcgtaaacca agtagtgaat cggctgcggt taaacaggca
     3421 taatgataca agcggttatt ttctgaagat tttttgcaaa aatttcatca aaaataaccg
     3481 cttgtttata tctaccttac tgccatttgg aacagaatca cttctgcttg gcagctgaaa
     3541 gtgatccaca ttttcatcag aaacccttct gcaatttgtg taatttcgct ttgaatttca
     3601 caaggttcgg tttcgaccga ttttgctttt tgtgcgaaaa attcgaccgc ttgttgagcc
     3661 agttcttcgc tctcatacac cgcttcaaag gcaatttggc ggtctgcatt atccaacata
     3721 gaatcgcctt ttagccggca catattatgt gcctcagccg ctttttgttg catcgttttg
     3781 ctcatattac accttatccg taatttgttt taaccaagtg taggattgat gctgtttttg
     3841 ctcatcgaaa atgtagttta ccgccataat ttcatcaatt tccactcgtg cttttagggc
     3901 tttaagttgt tgttcaacgc tttgcgggct accaattaag gagcattcgg tcatttggcg
     3961 gacaacggtt ttctcttgtc ggtatagagc attttgctca aaggcaaccg gcccgaaatg
     4021 cggcacaatt tctgctttca caaaattttc ccacactttg tcgtcagatt cgagcggtgg
     4081 ttgcagattt tgttgggcat tggtcactac atttaagaaa aactgggttt gggtggtcgc
     4141 cagttgtgtt gcttcttcat cggtttctgc cacaatggca ttcacaccta aaatcacata
     4201 aggtttatct aacacatcag agggcttaaa atgtgagcgg taaatgcgga ttgcatcgtc
     4261 cataaagcga ggggcaaagt gtgaagcgaa ggcgtaaggc aagcctcgtt cagccgctaa
     4321 ataggcactt tcagggcttg agcctagaat ataaaacggc acatttagcc cttgtgccgg
     4381 ataggcggaa acagggtttg taccgtcaaa gtagcctttt aattcgctga tttcatcggg
     4441 gaaaggcaaa ctctgggcgt aaggcagagg cggttcgcat atcggtgccg ggggctcgcc
     4501 caagccccag ttctactcgg tttgggtaga gtgtttcaag cgtgccgtat tgttctgcca
     4561 caatataagg gctgtggttg ggtaacatca cgccaccgga gccgactctt aatttttcgg
     4621 tgtgggagag ggcgtgttga atcaataatt gcgtggcgga actggcaaga tttttcatat
     4681 tatggtgttc ggcaatccaa tagcgttcaa tgccgatatt ttctgcgtgt tttgctaatt
     4741 tcaccataga atcgaccgct tgtttggcag tttgcccttc acgaatcggc acaaggttga
     4801 gaatggataa gtttgtcatt ttgttctccg agtttgcata taaaaaaggc tgaatagctt
     4861 tactattcag cacttgtaaa accatctcct taatatgggg acgattattt cttactcaag
     4921 aagaccacag cgtcaatata gcgttggata aaatcattgg tcgagcttga atcggaaaat
     4981 ccttctaggt taagctggta ttgaccattc acgaaaaacg ccggtacacc acgaatttgg
     5041 aagtcttcag ctaattgaac ttgtttattg actaaaccgt ttactgcaaa gctgttgata
     5101 ccgctgtcaa actgttctgc actaatgctg ttagcgatga agaccgcacg aatatcgtcc
     5161 attgatttaa acgcatcttt ttgagcggct tcaaacaagg cggtttttac tttatcttcc
     5221 gctcctaatg ccattgccaa tgcccaagca cgggttaagt tttcagattg gcgacctaag
     5281 aaattgacgt gatattgcac taatttgctg tctgcaggca atttcgcttt gatttggctt
     5341 ggaattttgt aatttagctc aaaatcgtaa cagtgggggc agtagaatga gaaaaattcc
     5401 accacttctt tttgagccga tggggcttta cgcacctcaa tatactcttt gccggcagtt
     5461 ggatctgctg caactgcggt tgcgttaaat gcaaaaaggg cagaaagagc aaccagtacg
     5521 gtttttaatg caaatttttt cataatgatt ccttcaaaaa tatgataagt gagaaataag
     5581 acaaacttaa tcgtttaaaa ttccacgagc tcggagcaat gcggttttaa aatcatcttc
     5641 ataatctttt ttaatgcccg gaatcggctc aaatttatcg gcgtttcgca ttttgagctg
     5701 ataaatcaaa acctcgtcac gcagggcatg aaaattatcc ggctcgctta cttccaccga
     5761 aagctgttgc agaatatcaa ttaagtgaag atcggggttt ttccgccaat gttcgccaag
     5821 cagttccaat agctcttcta aacgtttgca tttcatagta tgcctcttaa aaaacttgtt
     5881 gaatagtaag cggaataata tacttttagc cctcatttgg caaaaaaatt caggtttgga
     5941 gagggaaatg gaagagaaaa tttcagcggt aattttagcc ggaggtttgg ctcggcgaat
     6001 gaatggagcg gaaaaagggt tgcaactgtt agatcaaaaa ccgttgattt cgcacctgtt
     6061 agcccgactt tcgccacaaa tcgaggatat ttggctcaat atcaatcgtt cggtggaaca
     6121 atatcaacaa ctttaccctg aattacctta ttaccaagac agcttgcccg attttcaagg
     6181 cccactaagt ggaatgcttt ccgggttcga gcagattgag agcgactatt tactgtttgt
     6241 gccttgtgac acgccgttta ttccaaccca actattgcac aagttacaca cggcattacg
     6301 cattaatcag gctcaaattg cctatgctca cgatggcgac cgcccacacc caacggttgc
     6361 cttggtgcat cgttcggtgg cggaaaattt aagagcgtat ttagcctccg gcgaacgccg
     6421 attattgtgg ttttttcaaa cccaaaaaag tgtggcagtg gatttctcgg catataaagc
     6481 cgcatttcgc aattttaatt gtttagaaga tttaacggct ttcaatccat atcccatcaa
     6541 aaccctggcg attactggct atagcggcac aggcaaaacc accttattgg aaaaattaat
     6601 cccaaaattg accgcttgcg gtattcgggt tggcttgatt aagcattccc accacaatgt
     6661 tgatattgat aaaaaaggaa aagacagcta tcgcttgcga gaagcaggag caaacccgac
     6721 tatggtcgtg tgtgatgaac gttgggcatt aatgacggaa actaagcagg cagcagaaac
     6781 taaacaagcg gtcgaatttt cacaattaat tgcaaaattt gacccagaga cggtagattt
     6841 agttttagtg gaaggcttta agcacgaaac aatgccgaaa attcaactac accgtaaaga
     6901 aattgaaaaa ccgttgccgg cgttagacca gtggacaatc gcgaccgcaa ccgattatcc
     6961 gcttgagcgg gaaaatcggt tggatattaa tgatgttgaa cagcttgctg attttattcg
     7021 gcagtggcta gaggcaagca aagagccggc taattaattg actaaaaagc ccctaaagta
     7081 agcgattgct tagtttaggg gctaatagca attaccagct atatcccagt ttgaagccgg
     7141 caaaatgttg tttgccgatt tcgttacctt tcaatagacc aaggtgagag cttaattgcc
     7201 attgaccttt tgtaacaccc acgcccactt cagttttcag ataacgtccg aaacgttggc
     7261 taaaggtatt gtcattgact gccacactca agcgtttgct gctggcatcg acataatgtg
     7321 cggcaaggct aggctcaact ttccagctgg agaggtcaaa ggccttgctg actttcacac
     7381 ctgcttggta ggccataaag tgtgctttcg ggctgcggac ttctacttca cccagtttgt
     7441 aattttgtgc gctgaagcga tagtaacgtg taccaacagc aggctgaact tgtacgccgg
     7501 ctaagtcgaa gttatgtcca agatttgccc caatcgccat aatatgacgg ttaaagcggt
     7561 tctccccgaa caggtcgata cggtttttcg ctttaccgta gctaccgtct aggctgacga
     7621 aagtgccgtt ttccgaatgc catttaccat ataggcttgc catcagtaag ttggatttac
     7681 cgttcactcc ctcatcaaat tccgcattag cgtggttgcg ggatagcatc acaccggcat
     7741 tgataccgtt tgcaagcggt aattctatgc ctaactgagt gaggttggtt tgttgctcat
     7801 acgggcgata taaatccgat tggtgttcgg ttttttgatg ttcgatactg ctccaaacgt
     7861 ggaatttatc gtgttttgcg aacagttggc gatctaagtc ttgcccgatt tgcaacgcag
     7921 aatttgcctg tgccgatagc tcggaaagag cggtattggc atattggctt acccagtcgc
     7981 tttgttgaat attactactg tcagtgtctg cgtgtgcttg tagatgctca caatttgcac
     8041 cattctcttg gcaaagtttt agtgcctcag cgtttaaaat tgcttcacta tttccagcag
     8101 ttatacgtaa ggtagctaat tttgcttcta cttgttttgc aatattttgt gcagtttcaa
     8161 ccgcttgttc tacgttagca atttgcgcag cggatgcttt agcattgttt tctgctgtag
     8221 tgagtgcagc actcgcttgt gtgactttct gttttgctac cgtaatttgc ccttggattt
     8281 ggcggtaata cgttggatag taacggcggt agtaatcagc atattgttgc aaacgggtta
     8341 attcgctatt tgcttggcta agctgagatt gtgcgtttgc agcggcttgt ttagcatttt
     8401 tctctgcttg gcgctctttc tcggcttctg cgttcaaacg gctgatttcc tgtttttgtt
     8461 tatccgcttc tgcaatagca tggtctaatt ccgctttcgc cgttgcaatc gactgattcc
     8521 gatctttagc atcttttaac ggattgtata agcgatagcc gttgcttcga tttgccagca
     8581 cataacgata tgcacctaaa tcaacataac cgttttccag tgaaacttta gctttatcag
     8641 cctgagcctg atgggttaag gttaataaac ttaacgggct aaccacttca gcttctttgc
     8701 cactgttgcg taatgcaaga gtgaaagtcc cctcggcgag accatttact tgtaggtgat
     8761 cgcctttgcc agcagcaata tcggttaagt agttgatttt ggcattacct tggaaattac
     8821 cgtcaataat caacgtatta aaacgagtcg gtatctcgcc tgttacaaat ttttcattca
     8881 ggttgatggt tgaaccgttt tctgccacta aattgccagt acggctatcc ccagtgtttg
     8941 tccagcttgc ttggttagct aaacgaatgc tcgttgttgc tgctgcttga atggtgccaa
     9001 tcaggttcgc tttgccgatg tgtaattggc tctgttctgc caagctgaca tcaccattaa
     9061 tttgtgttgt gggcagtgtt gcaaaaattt cattagaaac gaccgcttgt gtatcacagc
     9121 ttgttttacc agtgtactca gaatagtagc aacttggagt ttgctcgttg ataaagccta
     9181 aatgtagctg agcatggtca ttcgctgaca agtttgcttg caggtttgag acattacgac
     9241 caacataaag ctgagcgtat tggtttagct gcatattatc agccttaaat tgacgatttt
     9301 gccaatcatc ggcataaact acatcttgct tattgatcgc atcataagcg tgaggggtcg
     9361 gtctgccgga aagtagcact ttacctcctt tcacagttag atcgccgttt aagttcaaac
     9421 caccagagaa ggtataaata ctattgagct tttcttgctc tattggtgcg tttttacggg
     9481 ctaatacttt gttgatcgct tgattgcgat ctgcagctaa aaattcccaa tgctcgctgc
     9541 ttaagccacc gcgaggaaca ggttgttttg gatcaccttt taatgcaaag tattcccgaa
     9601 ttttcgtttt cggattggtg aacagataaa tatctgcacc agctactagc cccttacccc
     9661 aagttacttc agaggcagtt gccggtggtg tagaggcttt tggatcatac accacattca
     9721 aacgaccgtt atgctgggtg ttatctgttt cgccaataaa accattaaag ctattgtagc
     9781 gatgctccag acctttttgc gcgagtactt gttttactgc tgcatccttg ttagaagaca
     9841 ggaaggtcca atgggcatta cttgcgccat tcgttggcat atattggttt ggattgcctt
     9901 tgagcgtaaa gtaatcggta cggttattag catgtgggtt gatatattca taaatatcag
     9961 cactgttttc tttccacgtt ccccatttta agtccgttgc ttcagggggc ttcgggccat
    10021 taatggtgag tgttgcagct ttttgtaggt gattattaac aatacgcgca ccatcatcac
    10081 tattttgaat acgattaaac gcaatgttgt tgccgttgag atctaaacga ccaccacgga
    10141 agccaaagta aatcttattt ggatcgactt gatcagcact gtttaataca acggttgaac
    10201 ggccgctcac aataccaact tggttaaatg cagatttttt gccattttca cccgcttgtt
    10261 gggtcaaaat gacagtgcct tgtccaacac taatgtcacc aaggttttcg cctttaccgt
    10321 taatatgtag tgtcccttcg cccaatttag ataaacggtc accttgtggg tttttgactt
    10381 gccaattaac ttgtttacct tttgccacta caattccagc tcctacccag ctttgatcat
    10441 tttcagggcg aactgttgca ttagcattga aatttaatgc gccagcacct tggtcaatat
    10501 cggtttttaa tacgatagtg ctatcttgtc cttcaatgtt tagggttttt ccggtgttat
    10561 cttgcggaag ttgtagctga ggtgtgccac catagcctaa tggagaagcg ctattgtctt
    10621 taattgaacg atcagcaagc gaaaccgtta agtttttccc tttattacca atgctactgt
    10681 ctttaccctg tgcagaccat tcaaaaacgg cattttgttg cgcattggtt aatgtgccgg
    10741 caatatcttc ggcaaattgt ttatcgtgat aatcctgacg gataataccg gcacggttgt
    10801 agtagttgtt tgcaggcgta ccaaaggtgt aagtagccag tagtagccag cgtttcgttt
    10861 tctgatcgta gccatacaca cctgaaccgc tatcaccacg agtaccaaat gcagttaatg
    10921 ctccatatgg gctattgttt aatgcatttc ctctaaaatc tagccagtaa tcggaattat
    10981 gtaccgcgat tggtaaatga actcccccgg ttaaatattg gtaagatgtt gaaatttggt
    11041 tgtctttatg ctcggtattt ttgactattt gacgaccaga gcctaagcga gcaaagtgag
    11101 taaaacgact actatcttgg taggctgaag cattattacc cagatcagtc actgttgcag
    11161 gtgcgacctc agtgactaat ttattgagac gtggcacttg ataatcttga tgttgcccac
    11221 cttcaacaat tccatagtcg ttacgatcaa cgactttgta agtgtagtgg tgtgcatcgg
    11281 cattagtgcc tggggcgcca aattccacag tattgtattg tgtattatgg gcaacgctga
    11341 ctaaatattg cggtgcaact agagttgcta tccctaagtt acggtttgca gcactaaaat
    11401 ctggcatcgg tacatttggg aagagtgcat ctaatgtatt gccactttta tctttaattt
    11461 caatattgct tgcacctacg gtgaatttac ccttattctc cgcaaaatca cggtagtatt
    11521 gaagatcgat atcatctctg aaaacagagg ctgttgcaga taaactaaca gcaaatgcca
    11581 caaagctggc aaggtaagaa agtggaaagt ttttatttat cataaaatgt taataaattg
    11641 ctaatattaa tggagtaaaa aggtggggta ttctatagat aattatttat ttggcaagag
    11701 gtcttacctg ttttttatac aaatttacaa tcttaagata ggcaaaagca gctacggaat
    11761 acgcagctgc tttgttgaaa gttttattga gtgataagca ggagcattat tttgcaaatt
    11821 cttgcataaa ttcgcccgct tgtttgacca ttgaggttga accgacaaag aacggtacac
    11881 gctggtgtag ctctgttggc ttaatatcta aaatcggatt aataccatct gtcgccattc
    11941 ctccggcttg ttcggcaaga aacgcaatcg ggttgcattc atagagtaaa cgcaatttcc
    12001 cttttggata tacggtggag gttgggtaaa tataaatacc gccttttaat aaattgcggt
    12061 ggaaatcgga caccagcgag ccgatatagc gtgaagagta tggacgtttg atggcttcat
    12121 cggtttcttg gcaatactta ataaagcgtt tcacaccttg tgggaaagta acatactgcc
    12181 cttcattgat ggagtaatat tttccttcgg taggggtttt tagatcaggg tgtgaaagaa
    12241 taaataagcc taatgacgga tcataggtaa aaccgttcac gccattgcct gtggtgtaaa
    12301 ccagcatggt tgaagaacca taagtaacat aaccggcggc aacttgttta cgcccttcct
    12361 gcaagaaatc ttcttgtgtt actggggtgc cgatagggga gacacggcgg taaatagaga
    12421 agattgttcc cacagaaaca ttcacttcaa tattggagga gccatcaagc ggatcggtca
    12481 ttaaaatata ttttgcattt ctcccacgct cattatcaaa ggcaacaaaa ttatcatctt
    12541 cttccgatgc aaagccggca acatcttcac gtgcaagtaa cgcttttttc atcgtttcgt
    12601 tggcgaatac atcaagtttc atttgggctt caccctgtac attttcagaa cctgcagtac
    12661 ctaaaatatc ttgacttaaa ccggcacggt tgatttctcg atgaataatt ttagcggcta
    12721 aacgaataga agataaaatc ccacttaatt ccccttttgc ccctgggtat tctgcttgtt
    12781 tttcaataat aaattcgccg agtgttttca tttttttctc cttcgctatg ttagaatgcc
    12841 cttattataa cgattacctt taaagaggta gcggtttaag ctttaattct gtgatccact
    12901 tcacatttta tctttcaaga tgaggagcaa tacgatgaat aatctacgaa tcaaaatgat
    12961 cagccctgaa atagcattag caaaatataa tgaattggat gttttagaga ttaatcactc
    13021 caaagtgaag gctaaaattg cattgcaagg tgcgcagtta ctgagttggc aacctaaaaa
    13081 tactcagcaa gatgtattat ggttaagtga aattgaacct ttccaaacag gtgtggcgat
    13141 tcgtggcggc attccgattt gccacccttg gtttggtaca gacaaaaagc ctgctcacgg
    13201 cacagcccgt attcaagcgt ggaatttgct ggaacatact tcctcagcag atgggattcg
    13261 tgttgttttg gggttagaaa atcaggcaaa actcgagatg atactaggcg aagtctgtga
    13321 gttgtatttt actcacttag caccggagcc ggcacaggct gcattgcata cttattttca
    13381 ggtcggtgat attacgaaaa cggaagtaca aggcttagca acacaatgtt ttgataaatt
    13441 gacaaatcaa gaaattgaag tgccatcacc tcgcaagata agtgaaaatg tggattgtat
    13501 ttatccggca caagcggtga attttattca agattttgca aatcagcgca ccattaaagt
    13561 tgagcatatt aatgctaccg aaaccgtact ttggaatcct tggcataata ccgttagtgc
    13621 gatgacagaa acggcgtatc aaaatatggt atgtgtggaa acagcacgga taaatacctt
    13681 acttcaacaa aatgaaacgc taggagtgag aattttggtg cgataatgtt taatgagagc
    13741 aagcagctga attagtaata ttttttacaa atttaaccgc ttgtctcttg tatttacact
    13801 agatcaaaca gtaaaaattc cacgtcatct tgagtgttta tttcaagtgc tttctcttga
    13861 cgaatgccta aggcatcgct ggtggaaagt tcaacgccat tgatgtttag attccctttc
    13921 accacttgta gccagtaact gcggtttggc tctaatgcca gttgctctga tttggctgtt
    13981 gggtattgat aacgccacag cttcatatct tggtaaattt taaatgaacc ttcttctgcg
    14041 tttggcgaaa gaatcaaggt tgctccctct ttcggggcaa atctatcttg gttgtagcga
    14101 ggggtcacat ctttttggtt tgggataatc caaatctggt aaaggtgtaa ggtttcattc
    14161 ggatctggat taatttctga atggaaaacc ccggttccgg cagacataat ttgaaattcg
    14221 ccagctttta cttcggtttt attacccata ctgtcttcgt gagccacacg tccttttaac
    14281 atataagtta aaatttccat attatcgtgc gggtgcttgc caaaaccgtg attaggtgca
    14341 atgaaatctt cgttaattac ccgtaaatgt gaaaaatgga tatgttttag gtcgtaataa
    14401 ttggcaaagg aaaaagtgtg gtagctttta agccagctaa aagaaccatc gcctcgttca
    14461 ttggcttttc tcagttgtaa cattatctat tccttatgta agtgttaagt tgtgccattt
    14521 tactttatgt caaaaataga taaaccctaa tttaat
//
LOCUS       DANMGB010000051        14300 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.051, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000051 DANMGB010000000
VERSION     DANMGB010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14300
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.051"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..334
                     /locus_tag="PXG19_001167"
     CDS             <1..334
                     /locus_tag="PXG19_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066472.1"
                     /translation="PDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSAKNKISEES
                     NIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEKMAEMMGYT
                     KEDWESMK"
     gene            336..659
                     /locus_tag="PXG19_001168"
     CDS             336..659
                     /locus_tag="PXG19_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066473.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(669..1001)
                     /locus_tag="PXG19_001169"
     CDS             complement(669..1001)
                     /locus_tag="PXG19_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6066474.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(1094..2290)
                     /locus_tag="PXG19_001170"
     CDS             complement(1094..2290)
                     /locus_tag="PXG19_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL6066475.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(2439..3782)
                     /gene="accC"
                     /locus_tag="PXG19_001171"
     CDS             complement(2439..3782)
                     /gene="accC"
                     /locus_tag="PXG19_001171"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL6066476.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(3854..4321)
                     /locus_tag="PXG19_001172"
     CDS             complement(3854..4321)
                     /locus_tag="PXG19_001172"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL6066477.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRVESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(4574..5356)
                     /locus_tag="PXG19_001173"
     CDS             complement(4574..5356)
                     /locus_tag="PXG19_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL6066478.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(5366..5803)
                     /gene="aroQ"
                     /locus_tag="PXG19_001174"
     CDS             complement(5366..5803)
                     /gene="aroQ"
                     /locus_tag="PXG19_001174"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL6066479.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(5889..6257)
                     /locus_tag="PXG19_001175"
     CDS             complement(5889..6257)
                     /locus_tag="PXG19_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6066480.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(6317..7141)
                     /gene="dapD"
                     /locus_tag="PXG19_001176"
     CDS             complement(6317..7141)
                     /gene="dapD"
                     /locus_tag="PXG19_001176"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL6066481.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            7289..7951
                     /locus_tag="PXG19_001177"
     CDS             7289..7951
                     /locus_tag="PXG19_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL6066482.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            7948..8700
                     /locus_tag="PXG19_001178"
     CDS             7948..8700
                     /locus_tag="PXG19_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6066483.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            8791..9627
                     /gene="ftsN"
                     /locus_tag="PXG19_001179"
     CDS             8791..9627
                     /gene="ftsN"
                     /locus_tag="PXG19_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL6066484.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(9669..10850)
                     /locus_tag="PXG19_001180"
     CDS             complement(9669..10850)
                     /locus_tag="PXG19_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6066485.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            10957..11295
                     /locus_tag="PXG19_001181"
     CDS             10957..11295
                     /locus_tag="PXG19_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066486.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            11427..12296
                     /locus_tag="PXG19_001182"
     CDS             11427..12296
                     /locus_tag="PXG19_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL6066487.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            12388..14199
                     /locus_tag="PXG19_001183"
     CDS             12388..14199
                     /locus_tag="PXG19_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066488.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
BASE COUNT         4175 a         3028 c         3049 g         4048 t
ORIGIN      
        1 gccagacgat gaatttactt ttattaaaac atttgcttct gctcataaac tgactttaca
       61 aaattttgtg atgtccgcaa tccaagctaa agttgcagaa atgtctgcta aaaataaaat
      121 atctgaagaa agtaacattc atcaacctct ttctaaagat gaaaaaataa tgctaaatga
      181 ggcaaaagta ttttattctg ctcgttcgca tttaaaggca gaaaatgtga ttcttccgag
      241 tgattttatg gagcaaatta aatcaggctg tggagcagaa aaaatggcag aaatgatggg
      301 atataccaaa gaagattggg agtcaatgaa gtaatatggg gcagattaca tttagtaata
      361 ttttcacaaa agtgattttt gagaatgtgc tttctgcttc aactaaagag aaaataaaac
      421 aaatgctttt tcagtctgtg gttgcattac ctcctctcca ttcagaaaga aaaatgattt
      481 tacagttgaa aaagcaaaaa attaccattt tttatcaagt tattgaggaa caatctgtgc
      541 aaatcctcgc ttatcaattt ggtggaactg ataaattgac aggtgtgtct aaagctcact
      601 ttaaaacact agatgccatt tttcaaatga cggatgaaga gaaagaagga aaattctaat
      661 gtaagcggtt atttttccat atttttttgc aaataacgtt tctcaaattt tgcttgatgg
      721 cgttcaagca cttccgtcat cgaaatgcca tatttatcgg ctaatacaaa aagattatcc
      781 atcacatcgc ctaactcttc gattaagtta tctcgttttt gctgttgtga agcttcggtt
      841 tcgtccggtc gttcacgccc gatttcaatc gctcttactg cacaagccac ttcgccgatt
      901 tcttctgcta gataagtcac ccgcataaaa gggcttcgtt cataccaacc ttgttgttgg
      961 taaaactggc gaacccattg ttgatattgt tcaatttgca ttttatttct gattcaaaaa
     1021 gtagggacga aaaatttttc gcccttttat aagaaaatgt atcagggcaa atgatgattt
     1081 gcccctagga gtgttactct gcctcagaga gaataatcca gccactatcc agccagtcgc
     1141 aaatggtgtc tagcattagc tccagctccg cttggtcttg cactttggag gcaagtttgt
     1201 tccacgaaat cgaatctcca ttggcgatac gaatcagtaa tgccatttct gcttcgttta
     1261 actcatcaat ccactcgcca tttacataaa cccgttgagg gttctcggtg tagaggattt
     1321 ttacatttgc atcttgctgt aaccagccgc cggcttcgag aatttcttgc acttcgtcag
     1381 ggtaatattc attgtcagtt tgcaataatt cataacggcg ggagcttgcc gcagtggcaa
     1441 cactgtgagt gagtaactca tcgaactgtt cggaattttg gagcaagtcg attaactgat
     1501 gtttaaacat tttcaccatt ttcggatcaa gcaacgcatt cggctgttca ttcggcgtta
     1561 agcggaacgg aagatgaaat tccgatgaat taatgttgtc ggcttgttgt tcgatggttt
     1621 tgcagagatt ttccagtaaa tcggtcgcat ttggataacg taaaccaaaa gagaaagtta
     1681 aaccttgctc gctttcggaa acaccatagt gagccattcg agacggcaca taaagcacat
     1741 cacccgggtt cattacctcg tccattacca gttcgcccat atcatcaaaa atgcggatcg
     1801 gttggtttgg tttgaattcg gtgcttggat cgcaccattt gcctaattgc caacgacgtt
     1861 gcccatagcc ttgcaccaag aacacatcgt actcatcata atgtttgccg acagtgccgt
     1921 tgagcggtga gcaagaaacc ataatgtcat cacgttgcca ttgcgggata aaaccaaaag
     1981 cctgccaaag ctcgcctagc tcaggagacc attgctcgag gttttgcacc attacagacc
     2041 attgtacagg taactcttcc aaatcttcct caacaagcgg gctggattta acagaccatt
     2101 tctcgttttc gcattgaatc aggcgtgcag tgacttcttc ctctaatgcc agttctaaaa
     2161 tatcttccgg ctcaaacaat ccgacaattt ggggtaagcc gttacgaatt aatagcggtc
     2221 gtttttgcca atattctcgc aaaaaggttt cagggctgat attttcaggt aagcagaatg
     2281 gaatgttcat aatggctcct tgctacgtgc ttctttgaga ttactgatat tctacccgag
     2341 aaatcaggaa aaacgggaaa ttttttatga tttagcgaca tcattcacat tttgaagagg
     2401 aaataatgaa aaaggcgaac attgttcgcc tttgaaattt attttaaacc gagttttttc
     2461 tcgagatagt ggatattggt gccacctttg cggaattctt tatccgcaag aatttgagta
     2521 tgtaaaggaa tattggtttt aatgccttcc acaatggttt cggaaagggc attttccatc
     2581 cggcgaatcg caatatcacg attttcagca aaggtaatca atttaccaat cattgaatcg
     2641 taatgtggcg gcacgctata gcctgagtaa atatgtgaat cccaacgcac acctaaacca
     2701 cccggaacgt gtaaacgggt aattttaccc ggcgatggca agaaggtgtt tggatcttct
     2761 gcgttgatac ggcactcaat ggcgtgacct ttcactttaa tatcatcttg tgtgatcgaa
     2821 agtggtaagc cggctgccac acgcagttgc tcttttacca agtccacacc ggtaatcatt
     2881 tcggttacag ggtgttctac ctgtaagcgg gtgttcattt caatgaagta aaactcgccg
     2941 ttttcatata agaactcaaa agtacctgca ccacggtagc caatttcacg gcaggcattg
     3001 gcacaacgct ccccaataaa ttgacgcaat tcaggtgtaa taccctgagc aggtgcttct
     3061 tccaccactt tttggtggcg acgttgcatt gaacagtcac gctctgctaa ataaaccgca
     3121 ttaccgtgag tatcggcaag tacttggatt tcaatatggc gtggattttc taaatatttc
     3181 tccatataca ccatatcgtt attaaatgcc gctttcgctt cggctttcgt cattgcgata
     3241 gattcttcca aatctttctc gtgatgaacc acacgcatac cacgaccgcc accaccacct
     3301 gatgctttga tgatcaccgg gtagccgata cgtttagcga tttctttatt tttcttcgga
     3361 tcgttaccaa ccggaccgtc agaacccggt acgcaaggca cgccggcttt tttcattgca
     3421 ttgatagcag agactttatc gcccattaag cgaatcacat cagccgttgg accaataaag
     3481 ataaagcctg atttctcaac ttgttcggca aagtttgcgt tttcagataa gaaaccgtag
     3541 cccggatgaa tagcatcggc attcgttact tcggcagcgg caataatcat cgggatattt
     3601 aaatagcttt ttaccgatgg agcaggaccg atacaaatgg tttcatcggc taatttaacg
     3661 tgttttaatt cacggtcggc agttgaatgc actgcaaccg ttttaatgcc caattcttta
     3721 caagcacgca aaatacgcag ggcaatttca ccacggtttg cgataacaac tttttctaac
     3781 atagggaaat tccttgtgtt ctagaaaatg tagggcgtgt tgcacacgcc cgttggataa
     3841 tttaaggaag agcttattca atgatgaata atttttggtc gaattctacc ggttcgccat
     3901 cattaactaa gatttctttt accacaccgg ctttgtctga ctcgacacgg ttcatcattt
     3961 tcattgcttc tacaatacat aacgtatcac cgattttcac ggtttgaccc acttcaacga
     4021 acggttttgc atctgggctt gggctacggt agaaagtccc caccattggt gaaagcactg
     4081 cgtggccact cgtttctgcg gcttttggtg cttcagccgg agctgcaaca ggtactgtcg
     4141 aagctacttg aggtgccgct ggtgcaacaa caggagctgc tgcatattga actgcagctg
     4201 gtgcaacagc tggagcagca cggctaatac gcaccgtacc ttcttcttca gacacttcta
     4261 actcggtaat gccagattct tcaactaatt caataagttt tttgattttg cgaatatcca
     4321 taataagatt ccgtatgtga ttaaataaaa taaaaaagag aactccacat ttggggtata
     4381 aattcaaatg tagagttaaa aaatgctggg cgtagaatac ctgaatttcg ctaattttgc
     4441 gaataaaatc tgataatttt ggcgaaaatg gacgatttta gcattcatcg taccagttag
     4501 gatttttgga aaatggtgac tcacaagcga ttgaaaattg ccaatttttt gtaaaaaaca
     4561 accgcttgtc agattatttc aataaatctt catttttctt gtaattccac ttgctaccgg
     4621 gcttgtcgat atactgaaaa tattcgttgg taaaagtacc ttgagcacaa gttactttgt
     4681 ctcggcggaa atttacttct ttatcaccaa tggcattatt tagggtgtca ggaccggtca
     4741 taacaaacac gccaccttca atccgacgat tctcaatatt gctgataatc agctcaaggg
     4801 tgtcttttag aatccaattt ccagcttccg aagccaagaa aaagttggtg tatttatcac
     4861 ggcgtttaat taacacttcg ctatcatttt cgccaataat tttagagagt gggtaaacca
     4921 aatgcccgtc aatatcaata taaatgccac cttctcggag caaagtaaaa attcgccaaa
     4981 aatcagcttg tgccgcacca tcggttaatt tgctataggc gttaaaggtg cgttcatcgg
     5041 cgttggcctt gatgtatgcc tctcgttctt ctgtgctaac gtagcgataa tcgtagctca
     5101 atgacattag gcggttaaac agataattcg catacattgg caaggtgact ttgttagaat
     5161 aattcgtttg ccaaatggtt ttggtaattt tgctcggaat gcttgattgg atttttgccg
     5221 ggctatattc cggaatggtg aaacgttttt tcggaaaaag tgcatggaac ggataactca
     5281 atattttgac gatattaccg aataaacgga agactccgtt acagatcaca ataaattgtt
     5341 catttttaac agccatttta ttaccttatg cttttaagtg tgaaattgca aaatccaacg
     5401 catattcata gccttttgcc cctaaaccgc aaataacgcc ttttgcaata tcacttagat
     5461 aggagtgatg gcgaaaaggt tcacggctat gaacgttaga caaatgcacc tcaacaaacg
     5521 gaatcgacac actcaataac gcatcacgaa ttgccacgct ggtgtgagta aatgccccgg
     5581 ggttaataat aataaaatcg gtatgctgaa aggcttggtg aatacggttg ataatcggct
     5641 cttcaccgtt ggcttgaaag ctctccagct caacatcttg ggccgcagcc aattttttta
     5701 agtggttttc aatatccgcc aaagtttgcg aaccgtaaat ttgtggctca cgtttgccca
     5761 acatatttaa attcgggccg ttaaggagaa ggattttttt catatttact tattcaactt
     5821 gtaattcata attaagccat tcacggtttt ctttcgcccc caagcgttga taaaaacgaa
     5881 taccaccgtc attccaagga ttttattgtc ttacaatgat gtgccttcgc ctcatttttc
     5941 aaggcttgca ttaacgcctc tcccactttc tgattccgag cagtttcatc aacataaagc
     6001 tctttcatat aaatagcggg gcggttttgg gcagtgtaag gaagaaaata ataaaccaat
     6061 atgccgataa tgttagacgc attttcagcc actaaacagt aaaaatcggg tgggcttttg
     6121 cgaaagccgg attccattac aacttcagga gtaatcgcaa aagaatcgat atagtgctca
     6181 aacacagcca gtttttgcat cagagggaac acttggtggg tatcttgttc gaccattttg
     6241 cggattgtaa atgccataaa attccttaca agcggtaaaa aaatccctca cttttgcaaa
     6301 gcgagggagg ttttaattat tcgtcaatag aacgtaataa gtcgtttaag cccactttgc
     6361 ttaaggtttt ctcatccact tttttcacaa tcaccgcaca gtagaggttg tgtgaaccat
     6421 cttttgatgg aagcgagcct gaaaccacaa cagagcctgc cggcacacgg ccgtaatgta
     6481 cttcgccggt ttcacggtcg taaattttgg tagattgacc gataaacacg cccattgaga
     6541 tcacgcagtt atcttcgaca atcacgcctt ctacgatttc agaacgtgca ccgataaagc
     6601 agttgtcgcc gatgatggtt gggttcgctt gtaatggctc taacacacca ccgatgccca
     6661 cgccaccaga aaggtgaaca tttttaccga tttgcgcaca agaacccact gttacccaag
     6721 tgtccaccat tgtgccttcg ccaacgtatg caccgatgtt cacgaaagat ggcattaaca
     6781 ccacgttttt ctcgatatgt gaacctttac gcaccaccgc acccggcacg gcacgaatgc
     6841 catctgcttt gaattgctct tcggtgtagt tgccgtattt ggttggcact ttgtcgtaga
     6901 atttggtttc tgcaccgtcg atgatttcat tgtcggcaat acggaatgaa agtaataccg
     6961 cttttttcac ccattggttt actacccact cgccatcttt tttctcggca acacgcagtg
     7021 aaccgttgtc taatcctgcg atcacctctt ctactgctgc tttggtttca gcatcaacgg
     7081 ttttcggagt aatttccgca cggcgttcaa atgccgcttc aataatagct tgtaaagaca
     7141 ttgttgtgtt ccttcaatat ataaattaaa acagaaaatt cggctcactt tttaacatag
     7201 aaaggcgttt atttccacaa gaaaaaacat atcgcagaaa tttagtttat aattccaagc
     7261 cacttatttg atacaagcgg tgatttttgt ggaaaatttt gcaaatctgc ttaccggtaa
     7321 aacgcgtgag catttagtgc cgttgccgaa cgctctttcg gataaacatt accttcagcc
     7381 tcaggtggtt gaggcttttt tgacgttgca gcatgctgca aaacaagccg gctttaattt
     7441 acagcctgcc agtacttttc gtgattttga acgccaaaaa gggatttgga atgcgaagtt
     7501 taggggtgag cgtaaggttc acgatgataa cggggttgcg attgatatgg cggcgttatc
     7561 ggatcttgaa aagtgcaaag caatgttgag atggtctgcg gtgccggggg caagtcggca
     7621 tcattgggga acggaaattg atatttttga ccctgattta ttgccggaaa atacgccttt
     7681 attgcttgag ccgtgggaat atttggaagg tggctatttt gccgatttaa ccaagtggtt
     7741 acacgttaat gcggaaacat ttggctttta tttcccgttt gacggtaaac attctcgagt
     7801 gggctttgag ccgtggcaca ttagctatcg cccgatttca aatgaatatg agcaacgctt
     7861 taacgatgaa atcttaaaag ctgcgtggca agatgaagaa gtggcgggta aggaatgctt
     7921 acttgaacat tttgaagaat tactaaaatg atccaattaa ttaacgaaac ccaacaacac
     7981 gacaaattcc gccaaatttg cgacaaatgg cagctggttg aagataaatc cagcccgtta
     8041 gccttagtgc taacggagga acgattggaa ctacgcaaat tagacgaacc caagctcggg
     8101 gcgattgcag tgaattttgt ggacggtacg atggcacatc ggcgtaaatt cggtggtggg
     8161 cgaggtgaag ccgttgcgaa agcggtcggc attaaagggg attatttgcc aactgtgatt
     8221 gatgcgacag ccggtttagg gcgagatgct tttgtattag cagcggttgg ttgtaaagtg
     8281 ctgttagtgg aacgcaatcc aattgtcgct gccttgttgg aagatggttt aaaccgagct
     8341 tatcaagatg tggaaatcgg cagttttatg caagaaagaa tgatcttagc cgatgttcga
     8401 gacatttctc agctagatcc acaatcccaa atggctgagg tagtgtattt agatccgatg
     8461 tatccgcaca aacaaaaaag tgcgttggtg aaaaaagaaa tgcgggtgtt tcaacattta
     8521 gttggggcag atttagattc ggacagcttt ttcttaccgg caaaaggatt ggcaaaaaaa
     8581 cgtgtggtag tgaagcgtcc ggactatgcc ccgtttttag cggagcaaaa gcctgatttt
     8641 tcacacacca ccaaaaatca ccgttttgat gtttatcttt ctcacctgaa aaatgattaa
     8701 aggtgggtca tgcgataggc aagcggttat ttttacagta aaatttacaa attatgttat
     8761 cgtttattta tatttaaaaa ggcggttatc gtgccacaac gtgattatgt cgctcgttcc
     8821 aacgagaaaa aaagtaaaaa aaatcaaaaa gaaagtaatg ttaaaaagat tttaatgcgg
     8881 attatcgggg taattttatt cttcggtatt ggtttatggt ttttgaaatc cagtgcacct
     8941 gtaccaacag ttccgtcagc accgcagcct gctaattcac agactaaaag cgaattacca
     9001 agtcgaccgg aagagacgtg gagctatatt cgtgatttag aaacccgtac ggtaattacc
     9061 gataatagcc aaacttcaca agaacgtttg gcacaattaa cggcggaaca aaagcagcaa
     9121 attgaagaaa gacgcaaaca agaagaagca cgcttagccg ctgagcaagc tcaacaaaag
     9181 cctgcgaccg atgtatctgc tacagaattg gctccgaaaa cagaggaagt taagtcgtta
     9241 acggaagaag aattagcagc aaaaaaagca caggagcaag ctttagcaca aaagcaagcg
     9301 gaagagaaac gcagacaagc agagcttaaa aaacagcagg aagcgaaaaa agagcagccg
     9361 gctaaaattg tagcaagtgc tgcaacactg gcagataaag ctgcaaatca ggcgggtaaa
     9421 tttgggttac agtgcggtgc atttaaaaat aaagcccaag ccgaaaatat gcaagcaaga
     9481 ttggcaatgg caggttttaa cgcccgtatc gcaagcagtg ccgattggaa ccgtgttttt
     9541 gtcggcccga taggtgacag agcggcaact tccagagctc aatccaatgc acgcagtgta
     9601 gcggaatgtg tgattgtggc gatgtaaaat tgattgaaat attgaagaga gctataggct
     9661 ctcttttttt atatcccaat cgcatatttc aaggcttgct ttttgatggg tgacacttta
     9721 tcagccaata ctaaaccgac attgcgggca attttgagcg gtaataaatc ggtcttaaac
     9781 gctttataaa acacgtccat gcctgtttgc atcagtaaat tatccggttt acgtttttgc
     9841 tcatagcgtt gaagcacctg ctcacttgca aaatttttgc cttttttgac cgcttgttcg
     9901 atcacctcaa gcaaggtttt aacatcttta aagcctaaat ttacaccttg tccggcaagc
     9961 ggattaatgg tgtgagccgc atcgccgact aataccaccc cgttttgcac atagtgctga
    10021 gcgtgctggc gggttagcgg gaaagcccct gaagcctgca cctgaatgtt gcctaattct
    10081 gcgttgagcc ggcttgggaa atgttgctca atcgcaactc ccagcttttc tgctggaagc
    10141 attttcagtt cggcaatttt ttgtggtgaa tcgtaccaaa caacgcagcc gtgattgccg
    10201 gaaagcggta aaaaggctcg agggccggtt ggatagaatt gttgccaagt gccgcttgga
    10261 gcaggttttt cggtggtaac ggtggcgagt aaacagtgtt ggcgatattg ccaagcggtt
    10321 aaaccaatgc ccgcccattg gcgaacctgt gaatttgcac cgtctgcggc aatcagcagt
    10381 ggggcagcaa aggtgttgcc atcaaccgtc acttcccaat actcgcccgc tttatttgca
    10441 aaaatttgct caaatccgac cgcttgtagg cagtttggat attgctttaa ttgctcccat
    10501 aacgcaattt gaataacgtt gttttcgacc atatcgccga gcttttccaa acccaaatca
    10561 gctgccgaaa aaagagtgtt gaatccatca atttcccagg tttcgagctg ggtataaggg
    10621 gtgcttctca ttgcaacaat ttgctcccac acgcccaatt tttctaacag ttgaatcgag
    10681 cccatactaa tggcggaaat tcgcaaatcg tagtctgaat caggattaaa ggtcggcaga
    10741 gggtttttct ccaacaaggc taaacgcagc ccctgttttg ctaagcctag agctgttgct
    10801 gccccaatca taccgccacc gattacaatc atatctaatt cagttttcat tttttcttcc
    10861 tttttagtta ggcaaaatac tgctaaaacg ccttgaattg tagtgcattt cagattagga
    10921 tcaaaccgat ttatctattt atctaaggag cgttttatgt cttgcaaaac tcatgcaaac
    10981 cacgagcacg aacacggcga aggctgtggt catactgcta ttaaacataa cgaccatatc
    11041 gactatttac acgatgggca tttacaccac aacaaacacg gcgatcacta tgacgaacac
    11101 gttttagaag tgaatgaaac caacccggca gactgtaatg ccgcccattg ctgcggcgac
    11161 cacgttcatg gtgaggtttg cggacacgaa gctgtgccgc acggcgatca tatcgactac
    11221 atcgtgaatg ggcgtttgca ccaccaacac ggcgaccact gcgatgacca cgggccggtt
    11281 gaaattgtga aataagattt ttgatgggag gttttagcct cccattatta tttttgcgat
    11341 ctcgctcgaa aaattgaaca ttcctgctac ccctcttccg attttccttt tatgctctcg
    11401 gtattgattt ctaataccga aatgtgatga ccttagcgat tgtttacagc cgagcctcca
    11461 ttggcgttga agccccgttg gtgacgattg aagtgcatat tagcaacgga caaccaaaat
    11521 taaccattgt cggcttgccc gaagccacag tgaaagaggc tggtgatcgt gtgcggagtg
    11581 cgttgctgaa cgctaatttt atctacccgc cacaacggat cacgattaat cttgctccgg
    11641 cagatttacc caaagaaggc ggacgttttg acttgccgat tgcgattggc attctggcag
    11701 cctcagggca aattgattct gatttattaa cgcagttcga gtttttgggc gagttggcac
    11761 tgacagggca tttgcgagga gtgcacggca cgattccggc agtgatttct gccgataaag
    11821 ccaaacggca gatgatctta gccaagcaaa atgcgaatga ggcatcgctt gtttccaatg
    11881 ccaccaccta ctttgccggc tcgttgttgg aggtggtaaa tatgctcaac aaacgggata
    11941 aactgccgat ttgtcagcac atttcgcaac attctgccga aattcgaccg cttgtcagcc
    12001 gagatcttac tgatattatc gggcaacaac acgccaagcg agccttaatg attgccgctg
    12061 ccgggcaaca taatttgctg tttctcggac caccgggaac gggtaaaaca atgttggcaa
    12121 gccggctggc ggatttactg ccggaaatga ccgatgagga ggcgattgaa accgcctcgg
    12181 tgaccagcct tgtgcaaaat gagctgaatt ttcagaactg gaaacaacgc ccgtttcgtt
    12241 cgccccatca cagtgcatca atggtggcat tagtgggagg tggctgtgaa aactagaaat
    12301 aaatgtcaaa aacaagaaat aaatgtcaca aatctttctc taatttcgct ataattcgat
    12361 catcaaaact ttaaggggaa atccgttatg ttctacctca ataacgacaa tttcaaacga
    12421 gaaccttatc gtggatattg tccgagtcac cttgaaaagc tttttactaa accacacctt
    12481 gatattagag gtaacggtta ttattaccct gacaatgaat atgttgtagc ttggtatgaa
    12541 tcggacttca ttttcaaatc aagaaaagct caagcacatg caaaagtaaa gcttgttaat
    12601 ttaacttgcc ccaaatacac tggcaaaaac agtgctgaat atttaagcgt tttgtatatc
    12661 tccgttcccc ttaattatct acattatttc actatcggca gtatctggaa aggcggtgtc
    12721 gccaaagagc agtttgctct cgaagaattt tacattacgg ttgaagctga aaatcaagat
    12781 ggtaaacgag aaaacctctc aatcgtttca ttcggtgaga gtgaggaaaa cggtttagag
    12841 aaaccatttg attacacaat ctacactatc cccacagaat atcacaacta cggtgatgac
    12901 ctaaaccgac tactttccat ctcttaccaa aatcaaaaat tcattatcca tccgctacat
    12961 atttttatga tgcactacgg gtactctacg gacatcaagc gtatcttggc aacataccca
    13021 cttgacgagg taagagaacg cctatttata gataaggtcg ttgagaattt tgatgtagag
    13081 cgttatgtcg ttttaccgaa atactttgta aaaaaagatg cgattttcct ctatcacttc
    13141 aaatatgacg aagagactac gggaacaagg gtaaaaaagc ttgtaagcca gtttaggtta
    13201 aatattcaca atcaaacaca tccaatagaa atagattttt ggcacacgca aaaggttgaa
    13261 ttgaaaatcc gtggtgttcg acttggaaat gctgtgttat gcgcagaaat tatcggtctt
    13321 aatcagcccg aaggcgaaga tattacgcta gtgctatctc aatcgaaaag agaaaaatcg
    13381 ggtaataaaa ccgaggaaca aaataacgag gtaaataacg ttcctattac cagagtttat
    13441 acacgagaac ctgaattgga tgagttacca ctcaccgata actccccaga taatcgaaca
    13501 gtcgaataca acaagcgaca atttgaactc ttgggccgtc aacgccaaat cagagcgctc
    13561 aagaaagcac gcgaagagag taatcagaaa atgaaagcct tgactccaga tgagatagac
    13621 tcactgggtg taggtgaatc agatggccga aacggtaagg ttggactcgc tttctgtttc
    13681 cttgatgata cacctgttgg caaaagctcc aaactataca aattatggca gcacgcgaag
    13741 gctgttgcgg aatggaatca cggtgaggcg cactggtaca cgcctaatct cggttttaga
    13801 aatgacgatg aactccttcc cgtttcctta gaaaccaaca aatgtttcga ctaccctgaa
    13861 atcgcgataa ttatccgcct ccaaatatac ggagaaacat ttttcctgat tgatttctca
    13921 atgaagcaaa gagatataag cattcgtggc ttagggtata aacccgatcc aaacgaagat
    13981 tttctctatg aaagtgatat gagcaaaagc gaattatccg aattattgtc cgcagttcat
    14041 catcatgaac atctgccaaa agagtacata gagaaaaaga acaaagaaaa aaccaaactc
    14101 actacattta accatagcga agccgaaagt agtaactggg cttataacgc ggtgcaaaaa
    14161 ttaacttcaa gggcaattac taagccgaca tatttttaat tatttttatg aatgcagaac
    14221 aacgtgtaat tgttactccg acattttggg gtaaattttt tggaaaaatt aaaagtgttg
    14281 aacttcaaca aaacaaagtt
//
LOCUS       DANMGB010000052        14217 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.052, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000052 DANMGB010000000
VERSION     DANMGB010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14217
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.052"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            38..301
                     /locus_tag="PXG19_001184"
     CDS             38..301
                     /locus_tag="PXG19_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6066489.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            317..847
                     /locus_tag="PXG19_001185"
     CDS             317..847
                     /locus_tag="PXG19_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6066490.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(863..1990)
                     /locus_tag="PXG19_001186"
     CDS             complement(863..1990)
                     /locus_tag="PXG19_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL6066491.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(1994..3508)
                     /gene="xylG"
                     /locus_tag="PXG19_001187"
     CDS             complement(1994..3508)
                     /gene="xylG"
                     /locus_tag="PXG19_001187"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL6066492.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            complement(3575..4576)
                     /gene="xylF"
                     /locus_tag="PXG19_001188"
     CDS             complement(3575..4576)
                     /gene="xylF"
                     /locus_tag="PXG19_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6066493.1"
                     /translation="MKLKSKLLAVATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            4818..6137
                     /gene="xylA"
                     /locus_tag="PXG19_001189"
     CDS             4818..6137
                     /gene="xylA"
                     /locus_tag="PXG19_001189"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL6066494.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            6290..7735
                     /gene="xylB"
                     /locus_tag="PXG19_001190"
     CDS             6290..7735
                     /gene="xylB"
                     /locus_tag="PXG19_001190"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL6066495.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(7798..8121)
                     /locus_tag="PXG19_001191"
     CDS             complement(7798..8121)
                     /locus_tag="PXG19_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL6066496.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            8245..8787
                     /locus_tag="PXG19_001192"
     CDS             8245..8787
                     /locus_tag="PXG19_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL6066497.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            complement(8958..9782)
                     /gene="dapF"
                     /locus_tag="PXG19_001193"
     CDS             complement(8958..9782)
                     /gene="dapF"
                     /locus_tag="PXG19_001193"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL6066498.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            9931..11253
                     /locus_tag="PXG19_001194"
     CDS             9931..11253
                     /locus_tag="PXG19_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6066499.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            complement(11301..11660)
                     /locus_tag="PXG19_001195"
     CDS             complement(11301..11660)
                     /locus_tag="PXG19_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL6066500.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            11873..12658
                     /locus_tag="PXG19_001196"
     CDS             11873..12658
                     /locus_tag="PXG19_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL6066501.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            12662..14173
                     /gene="glpK"
                     /locus_tag="PXG19_001197"
     CDS             12662..14173
                     /gene="glpK"
                     /locus_tag="PXG19_001197"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL6066502.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
BASE COUNT         4107 a         3038 c         3015 g         4057 t
ORIGIN      
        1 tatattatct aaatcgttaa gcgaaaggag ttatctaatg agtacattgg aagatattaa
       61 aaaaacagcg aaagactggc atagggccga catcatcgct gctttacata aagcgggttg
      121 gtcgcttaga caactctcat tgaagcatgg ctacagtcaa tccagcacct tgaaaaacgc
      181 tgtagatcgt ccgtggttaa agggtgagcg tattattgcc gaagcaatcg gtatatcacc
      241 cgaagaaatt tggcctgaac gttatgctca acgaaaccat aaaaaatttg ccgacagata
      301 gcttaaagag gtttttatga gtgaaaacag tctaaaaaca cactattcgg caaaagaatt
      361 ggctgagtta agtttagcct gtttacctaa aacaaagcaa ggagttttgt atcaggcaaa
      421 gaaacaagga tggactactc ataaaaaggt tggagttggg ggagaaattt tagaatttgc
      481 actctcaaac ctccctcaag aaatccaaac cgaaatccgc tcccgcttta tgtcggcggt
      541 ggtggaagcc aagccgaaaa agttaccggc agtgcgtgcg gaggtggatg tgggaaacct
      601 gaccaccaaa cagcgagaaa ttgctgatgc acgaatggca ctggtggcgt atgtgttgga
      661 actggaaggc tcaatgagcc ggattaaagc gataacctac ctttgcaacc ttgccaaaca
      721 aggcgaaatg ccaccgcact tggtggagct ggttgccgta gcaaatgcta aaaagacggc
      781 aaaacgcaca atagttccca tttttagccc gattatgccg gatttcccgt tggatagtcg
      841 agattgaccg cttgttatcc aattaggctt ttttcttgct gatggtatct acccaaactg
      901 caagcagtag aattccacct ttaacgatat attgccagaa ggttggcaca tcaagcatac
      961 tcataccgtt atccagcaaa gcaataataa atgctccaat aactacgcca taaatgctac
     1021 cgataccgcc ggctaaactg gctccaccaa tcacgcaggc ggcaatcgca tctaattcgg
     1081 cattttgccc ggcggaaggt gcgccggctc caagacgtga gcttaaaatc aagcctgcaa
     1141 tggcaactaa taagccgttt aaggcaaaaa tcgcaagttt gactttttca actgaaatcc
     1201 ccgagaggcg agcggcatca atgttgccac caatcgcata aatgtgacgc ccgaaggcgg
     1261 tttttctggc caagaatgtg ccggcaatgg ctagaatcac caacaccaat accgggaatg
     1321 gcacaccacg gtaatcattg agtaggtaga tcgcacctaa tacgataatt gcaactagtc
     1381 cgtatttcag cgtgtctttc gacatagaag gcacagtaag attgagtttt tgtctggctt
     1441 tgcgttggta gctaccccaa acaataaagc aaaatatccc gatagtacct aaaatcatac
     1501 ccaccatatc aggcaaatag ccttgaccaa tggttgtcat ttcattgcta atcggtgaaa
     1561 cggttgtccc gttggttaag ccgaccaata caccacgaaa cgccagcata ccggcaagag
     1621 ttacaataaa ggacggcact ttttgataag caacccacca accgctccaa gcacccagca
     1681 tgacgcctaa aattaaagta actataatag ttaacgagag cggccagccc caccatacat
     1741 tactgatggc ggcaaatcca ccgagtaagc ccattagcga gccaaccgat aaatcaattt
     1801 ctgcggaaat aatcacaaat accataccga tggcaagaat accggtaatg gaggtttggc
     1861 gtaacaggtt ggagatattt ctggcactta aataagcacc gtcagttgca atagagaaaa
     1921 agctcataat cacaacaatt gcaatcagca taatataaac ttgtaaatta atcgatttta
     1981 acttattcat aggttactcc ttgagtgccg cttccattac tttttcttgg gtaaggtctt
     2041 ggttaatcaa atctgcttta attttgcctt ggtgcataac caatacacga tcactaatgc
     2101 ctaaaacttc aggtaattcg gaggaaatga cgataattgc cataccttct ttagctaatt
     2161 ggttgatgag cttataaatt tcatattttg ctcccacgtc gataccacgg gtcggctcat
     2221 ctaaaatcag gattttaggg ttaagcaata ggcattttgc caaaattgct ttttgctgat
     2281 taccgccact taaccgtcca attgctaatt caggcgagga agttttcact ttcagttttg
     2341 caatagattg gttgataatg gtttcttcca gcggttcatt tattactttt ttgccaaaac
     2401 aaaattgcgg taatgaagag agagttatgt ttttacccac ccccataatt ggaatgatgc
     2461 cgtgtttttt gcgatcttcc ggcaccatca caatatggtt ttcaatcgct tgtgcacaat
     2521 ttttgatttt aatcggttgc ttatgcagaa aaatatcacc ttgatatttg ccttggtaag
     2581 agccaaaaat acattgtgcc atctcggttc gccctgaacc gaccaaacca gcaataccta
     2641 aaatttcacc ttggcgtagt acaaaattag cattatcaac ccgtttgata tgtgtattgg
     2701 ttgggtgcca agcggttaaa ttttcaactc gaaggacttc ttcaccaata ttgtgtggct
     2761 cgtgtgggta gagcgaggta atctcacgtc caaccatcat cgtaataata tcgtcttcac
     2821 tcattccctc tgcactgcga gtaccgatat gttcgccgtc tcgaatgaca cagattttgt
     2881 cggaaatggc tttcacttca ttcaatttgt gtgaaatata aacacaagca atattgtgag
     2941 cttgtaaatc tttaattaaa ctcagcagaa tctcggtttc tttttcggtt aacgaggcgg
     3001 taggctcgtc taaaatcaac aaccgtacct gtttattcaa tgctttggca atttcaacca
     3061 actgttgttg ccctaaacct agctctccaa ctttggtgtt tgggtcaata tccaactgca
     3121 cttgttcaag taaggtttta caacgcagat acatttcatt gtcatctgta atccctgatt
     3181 tggtaatttc attccctaaa aacatattct ccaaaatcga catatttttt actaaggtca
     3241 attcttggtg aataatcgaa atgccttttt cttcagtatc tttgatattt ctggcaatca
     3301 atttttcgcc ggaaaaatag atttcccctt cataatcacc ggcaggataa attccacata
     3361 atactttcat cagagttgat ttgcctgaac cattttcacc acataaagaa agtatttcgc
     3421 cggtttcaag ggaaattgaa atattattta atgccacaac ctcaccgaat tttttagtga
     3481 tgttcttcat ttctaataat ttcgccatac ttagttagcc ccttattttc aaaaatggcg
     3541 aggaagcctc gccatctaga aaaattaaag tgatttattt atatactgca tctttggtat
     3601 ggaagccgtc tttaattact gtgtcatcaa tattttcttt agttacaaca accggctcta
     3661 ataaatatgc cggtacttct ttcataccgt tatttaattg agcattcatt tctactttct
     3721 catctttacc taatgcaaca gcaatttcgg cagctttgtc ggctaaattg gtaattggtt
     3781 tatacactgt catcgtttgc gtaccggcaa taatacgttt aattgcggct aaatctgcat
     3841 cttgtccgga aattgcaacc ttgctggata acccttgggc acttaacgct tgaattgcac
     3901 cgcctgcggt tgcatcgttt gaagctacaa ctgcatcaat attattttta ttagcagtta
     3961 gtgcattttc cataatctgt aatgcttttt cagcaagcca agaatctacc cattgatcgc
     4021 ctaccacttt aatttttcca ctgtcaatta acggttgtag caccttcatt tgacctttac
     4081 ggaacagctt cgcgttatta tctacaggtg aaccacccat taggaaataa ttcccctccg
     4141 gcttttgccc aataatgctt ttagcctgca attcacctac tttttcatta tcaaatgaaa
     4201 cataaaaatc cacatcggca ttattgatta agcggtcgta agcaagtacc ttaacacctt
     4261 ctttcttcgc ctcggcaatc acattggata acacttcgcc gttaaacgga ataatcacca
     4321 atacatcaat atctttattc aacatattct caatttgtga gatttgtgcg gttgcatcgc
     4381 catttgccga ttgaacgaag acttttgctc ctaagctttc cgctttattc acaaaaatat
     4441 ctcggtcttt ttgccaacgc tctaagcgta aatcatcaat tgacataccg atttttagat
     4501 ctttagcaac agaagcattg ctgagtacca ttaaagtcgc cgtagcaacg gctaataatt
     4561 tagacttaag tttcatagtt cacctcattg gttatgaaaa tgtgagcatc tttttcgccc
     4621 gtaagcagtc tgggcttatt tcaaatgaag ttcaattatc atatttatta atatcattat
     4681 gatttttcac ttttgtgatc tacgccacat taaccaataa tcgaaatcca aaaacgaaat
     4741 atcgtaattg aaggttttgc ataattttcc gatgatgtta ccgaaagatt atttttccaa
     4801 ttcataggag cattattatg tctaactatt tcgacaaaat ctcaaaagta caatatgaag
     4861 gggctaattc caccaacccg tttgcattca aacattacaa cccggatgaa gtggttttag
     4921 gcaaaacgat ggcagaacat ctgcggttag cggtttgcta ttggcacacc ttctgctgga
     4981 cgggtaacga tatgtttggc gtgggttcgc ttgacagaag ctggcaaaaa acgggggatt
     5041 tactgcaagg tgcgaagcaa aaagcggaaa ttgcctttga atttttccaa aaattaggca
     5101 ttccttacta ctgcttccac gatgtggatg ttgcaccgga aggcaacaat ttcaaagaat
     5161 atcagcacaa tttcaacact attgtggata ttttagagca aaaacaagct gaaacaggcg
     5221 tgaaattatt atggggtacg gcgaactgct ttaccaatcc tcgctatatg tcgggtgctt
     5281 caaccaatcc gaatccggaa gtctttgctt gggcggcagc acaagtcttt accgcaatga
     5341 acgcaaccaa acgcttaggc ggcgaaaatt atgtattatg gggcggacgt gaaggttatg
     5401 aaaccctact caacactgac ttaaaacgtg agcgtgaaca aatcggtcgc tttatgcagt
     5461 tagtggtgga acataaacac aaaatcggtt ttaacggcac tttattaatt gagccaaaac
     5521 cacaagaacc aaccaaacat caatatgact acgatgttgc caccgtttac ggtttcttaa
     5581 aacagtttgg tctagaaaaa gagatcaaag tcaacattga agcaaaccac gccactcttg
     5641 cagggcatac tttccaacac gaaattgcga ctgccaccgc attagatatt tttggctcga
     5701 ttgatgccaa ccgaggtgat ccgcaattag gttgggatac cgaccaattc ccaaacagcg
     5761 tggaagaaaa cacccttgtg atgtatgaaa tcttaaaagc aggtggtttc acaacgggcg
     5821 gtttcaactt tgatgcgaaa atccgccgcc aaagtaccga tccgtatgat ttattccacg
     5881 cacatatcgg ggcaattgat gtgttagccc tttcgctaaa acgtgcggca aaaatgctgg
     5941 aagatcaagc attacagaaa gtagtagata accgctacgc tggctggaac caagatttgg
     6001 gcttacaaat tctaaacggt aaagcaagcc ttgaagattt ggcaaaaata gtggaaaccc
     6061 aagggttaga tccaaaacct gtttccggtc agcaagaata tttggaaaat ttggtaaata
     6121 gctatattta ccgttaatct acaagcggtt gttttttatc aattttttgc aaagttaagc
     6181 tcgatctgat ccccctcttt gctaaagagg ggtgatagat ctccaaaact taaaattgca
     6241 aatgttccga ataaaatgac cgcttgtatt caataacaaa ggaatattta tgtacattgg
     6301 aatcgatctc ggcacatcgg gtgtgaaagt cgtgttactc gatgaaaatc aacacattat
     6361 tgccatcaca caaaaatcac ttcctatttt tcgtccacac ccattgtggt ctgaacaaaa
     6421 tccgcaagat tggtggaatg ccaccaatga agcgatgtta gaactttccg ctactcaaga
     6481 tttacaagca gtaaaagcga ttggtttaac cgggcaaatg cacggagcga ctttactaga
     6541 taacgcagat aatgtacttt cccctgcgat tttatggaat gacggacgta gttttatgga
     6601 atgcgaagag ttagaacagc ttgtgccaaa tagccgtgaa attacaggca acctgatgat
     6661 gccgggcttt accgctccga aattgcgttg ggttgataaa caccagcccg atattgccga
     6721 aaaagtcagc aaagtcttgc taccgaaaga ttatctccgc ttgttgatga gcggcgaata
     6781 tgcctctgat atgtctgatg cctccggcac aatgtggctt gatgtgggta aacggaattg
     6841 gaacaaatcg ctactaaatg cttgcggatt agacattgaa aatatgccga aactgtttga
     6901 aggcaatcaa atcacaggtt atttacgtcc aacccttgcc gagcaatgga aaatgaaatc
     6961 tgtgccgatt gtggcaggcg gtggcgataa tgctgccggt gcaatcggca ttggcttata
     7021 ccaaaccggg caagctatgc tctcattggg gacttcaggg gtttattttg tagtgagcga
     7081 taaatttcag gctaatccgc aaaaagcagt gcatagtttt tgccacgctt tacctgatcg
     7141 ttggcatctg atgtcagtaa tattaagtgc cgcttctgcg gtagattggg cagtaaaatc
     7201 attgggacta aaagatgtat cgactttatt ccaacaggtt gaagcaagcc aaacggcatc
     7261 tgatgctatt ttcttacctt atttatcggg tgaacgtaca ccgcataatg acccttatgc
     7321 gaaaggcgta ttttggggat taagccataa tgacaaccaa ataacgatgg caaaagccgt
     7381 gattgaaggg gtaagtttcg ctttggctga agggattgag gtactccacg aaactggtgt
     7441 agttgctgac aatattgcat taattggcgg tggagcaaaa agtgtgtact ggcgacaact
     7501 acttgccgat attagcggta aaacctttga ataccgcacc agtggtgatg tcggtccggc
     7561 attaggggcg gcaaaactcg ctcaaattgc gctaaaccca aatcaggata ttgctacgtt
     7621 ctgtcagccg ttacccctgg aacaggttta ccaaccaacc cctgcccgct atgcagaata
     7681 tcaacaaaaa cgccaaaaat ttactgagct ttaccggcgg ttaaaggggt tataattctt
     7741 gccaactatt acaagcggtt gattttgcag atttttttgt aaaatcaacc gcttgtatca
     7801 cactttagaa aacaaattaa tcaccaatac accggcaata atgaggctga tgccgattaa
     7861 gcctgccaag tcaattttct gtccgaaagc aaaataagca acaagggcgg taaggacaat
     7921 ccctacgccg gaccaaatag catacacgat tccgaccggt agggtgcgga aaataataga
     7981 gagaaagtaa aaggataaac cgtataaggc gagcgagcca atagtcggta tagctttggt
     8041 gaagccgttg cttaatttga gtaaattggt ggcagcgatt tcgaggcaga tggaaatcgc
     8101 aagtaaaatc caaacgttca ttgatgacct ctttgcgtaa atgcgtgcta ttttacctga
     8161 gttgcaaaaa aatttaaaaa aatcaccgct tgttttttcc tgattaagct atggtacaat
     8221 ctttggtgaa tcaggaggtg tgaaatggca caggtttata tcgtacacgg ttatacggcg
     8281 aatgccgata agcattggtt tccttggctg gagcaagaat tagcgaagtg tggtgtcagt
     8341 tgtgagcggt tgaatatgcc ggattcggca aagccgtcat tagatggttg gttaaatcat
     8401 cttgcacaaa atgtggagct gaccgatcaa acggtttttg tcgggcatag tttaggttgc
     8461 attgccattt tgaatttttt agccaaaaat tacgccaaga ttaaaggggc ggtgtttgtg
     8521 tcggggttct atcaaccggt agaaaactta cccgaactgt ctgcctttac caactattat
     8581 gcgattttgc cgagcgtatc gagctttcca agctatgtgg taagtgcgtt agatgataag
     8641 gtcgtgaatc accaatacag tgatgcgtta gcccaacatt tgcacgcgga ttatattcgg
     8701 ttaaatcaag gcgggcattt tttggataga gaaggtgtta ccgaattacc tgtggtgttg
     8761 gagttggtga agaagttact cgagtgaaac ctgttttggt acaagcgagg acgcttgcac
     8821 catctataag ttgaatttaa acaaaagtta tacatcagtc tgatagtgcc agcgtccacg
     8881 ctggtacttt tgtataaacc aaccctattt tgcaaaaaaa cggtaaaaat aaaccgcttg
     8941 cctccctatg ggaaaactta cagtttaata aatccatcat aaatgtgggt ggcatcgccg
     9001 gtcatataca gaggatgccc tactccttgc cattcaataa tcagcgttcc accgggtaaa
     9061 tccacctgca ctttgttatc taacaagcct tgcataatgc cgaccgccac tgtgccgcac
     9121 gcaccgctac cacaggcttg ggtttcgcct gctccacgct catacacccg taatttaacg
     9181 tgattgcgat tcactacttg cataaagctg atattcgccc gttcaggaaa acgctcgtgg
     9241 ctttctagta acggcccgag ttcatttacc ggggcggttt tcacatcatc aacttgcagt
     9301 acgcagtgcg gattccccat tgaaaccacg ccacataaca cggtttgtag ctcggtgcgt
     9361 aaaatatagt ttttctcaaa tttatttgct gtaaaaggca cttgcgaagg ttcccaaatc
     9421 ggttcgccca tattcacacg cactttgccg tcttcttgca aacttagcac cattttgcct
     9481 tttgcggtgc taacgtgaat gtcttttttg ttggttaagc ctttgagcgt aacaaaacgg
     9541 gcaaaacatc tcgccccatt gccacattgc gacacttcac tgccgtctgc attaaaaatg
     9601 cgatagtgaa aatctaattc agggtcgtaa ggcggttcaa ccaataaaag ttggtcgaaa
     9661 ccgataccac gatggcgatc agaaagcgta cggatcatct cttcggtaag gtaaacgttt
     9721 tgggttacac catcaaccac cataaaatca ttgcctaagc cgtgcatttt tgaaaattgc
     9781 atattattcc ttaattaatt agaaatttta ttgatttaga ttatagagat tagttttatt
     9841 tattgatata gtacgtgccg attaatttga tgaaaaatgc agattttttc aaacacagag
     9901 tttcatttac ttatttagga gcaaaaaatt atgtctgcga tgtttattat ccaatttgcc
     9961 atagtgttac tatgcatttt ggttggcgcc cgtgtaggcg gtatcggatt aggggtgttc
    10021 ggtggcttgg gcttagccat tctttcattt gggtttgggc taaaacctgc cggtttaccg
    10081 attgatgtaa tgtttatgat tatggcggtt gtgtcggctg cagcagccat gcaagcagcc
    10141 ggtggtttgg actatatgat caaaattgcc actcgcattt tgcgtaaaaa cccgaaatac
    10201 attaccttta tcgcaccgct tgtaacttgg acattcaccg tgcttgccgg tacaggtcac
    10261 gttgcttatt ctgtattacc tgtaattgca gaggtaagcc gccacaacgg tatccgccct
    10321 gagcgtccac tttcaatggc agtaatcgcc tcacaatttg cgattgtcgc cagcccgatt
    10381 gctgcggcag tagttgctgt ggttgccttc cttgaacctc aaggtgttac attgggtaac
    10441 gtgttaagtg tgactattcc tgcgacctta ttgggcttag gtttagcttg tgtgtttgta
    10501 aataaaatgg gcaaagaatt aaaagacgac ccaaattatc aacgcttatt gcaagaccct
    10561 gaatatgtga aagaaaatca cattactacc aatccaaccg aattaccgtt aaaaccgact
    10621 gcgaaattat cagtaggctt attcctattc ggtgcattat tagtggtatt aatgggcgca
    10681 attccagctc ttcgccctgt gtttgatggt aagccgatgg ggatggctca cacgattgaa
    10741 attgtgatgt taagtattgg tgcgttgatt atcttcttct gcaaaccgga cggtaatgaa
    10801 atcaccaaag gttctgtctt ccacgccggt atgcgtgcag tgattgcgat tttcggtatt
    10861 gcttggttag gcgatacctt aatgcaaggt catatggacg aagtgaaatc aatggtttca
    10921 ggcttagttg aaaccgcacc ttgggcattt gctttcgcat tattcgtact ttccgtattg
    10981 gtaaacagcc aaggggcaac ggttgcaacc ttattccctg tagcgattgc tatcggcatt
    11041 cctgcaccgg tgctaatcgg ggtatttgtg gcggtaaacg gctacttctt cattccgaac
    11101 tacggcccga ttattgcctc gattgacttc gacaccaccg gcacaacccg tatcggtaaa
    11161 tatattttca accatagctt tatgttaccg ggcttactta gtatgatttt cagtatcgga
    11221 tttggtttat tactttccaa tatcctactt taatcgctcg caaaacctcc cgtttgggag
    11281 gttttttatt tgcaaaattt tcagcaaaaa cgaccgcttg taacggctct tgcaagcatt
    11341 acacctatca aagtaagcaa aagcccaccg attaaatgta aactcagcac tgtcacaaac
    11401 tgcccccatt tttctgctaa tagtttttcc gttagttcta aagagaaact ggaaaaggtg
    11461 gtaaaactgc ctaaaaaacc gctgatgaac agcaaccgct ggctctcgcc taaattaaac
    11521 cccattgcaa taccaattaa caaacaacca agccaatttg ctgctaaagt accaaaggcg
    11581 aattggctga gtatcgggtt tagccaaacg gctaattgcc agcggcacat agctccaagt
    11641 accgccccga ttgaaatcat aagtattgaa gacatcattt ttcctcatct aacgttttct
    11701 cacatcatac ctaaaaatga gtgatttaga aaaataatgt gatggatttc acaaatttga
    11761 aacttcctat ttgcttaaaa aatgccgctt tggcaatatc actccgaaat atgttcatat
    11821 tcaaacattt tttcatcact ttccaatcat tttcatctta aggagaaact ttatgagcaa
    11881 atccttacgt aatgcctgta ttggcgaatt tatcggtaca ggttttattc ttttctttgg
    11941 tgctggttgt gttgctgctg ctcaggtagc cggtgcgaat ttcggtttat gggaaatttc
    12001 catcgtttgg gggcttggtg tttccatggc aatctacatt tctgccggta tttccggtgc
    12061 tcaccttaac cctgcggtca ctatagcact tgccgcattc tacggctttg aaaagcataa
    12121 aattttgccc tatgtcatcg cccaagttgc cggagcgttt tgctctgtcg cactgattta
    12181 ttttatgtat agcgatctct ttactgccgc cgaagccgct caaggcatta ctcggggcga
    12241 aactgttggc tttgccggtg tgttctccac ctatccaaac cctaatatta cattggttac
    12301 cgccttcatc gttgaatttg tgattactgt ggtgttgatg tccactattt tagcgattgg
    12361 cgatgataaa aacggcttgc cgaataaagc cttagccgca ttactcatcg gtttattgat
    12421 tgcggtaatt ggtggagcaa ccggcccgtt aaccggcttt gcgatgaacc cggctcgtga
    12481 ttttggtccg aaactctttg cttatcttgc cggttggggt gaaattgctt taacaggcgg
    12541 aaaagaaatt ccgtatttca tcattccgat tgtcgcccca atctgcggtg cattattcgg
    12601 tgcttggggt tataaaaacc tcattcataa caatcttcca gcaaatactc aggagtaatc
    12661 tatggaaaaa caatatatca tcgctctcga ccaaggtaca accagctctc gtgcggtttt
    12721 attagataaa aatgccaatg tggttgaagt ggctcagcgt gaatttaccc agatttatcc
    12781 gcaagcaggc tgggtagaac ataacccgat ggaaatttgg tcaagccaaa gttccacctt
    12841 aaatgaagtg gtggcaaaag ccggtattaa gccggatagc attgccgcaa tcgggatcac
    12901 aaaccaacgt gaaaccacga ttgtgtggga aaaagagacc ggtaaacctg tttataatgc
    12961 gattgtgtgg caatgtcgtc gcacatcgga tattaccgat aaattaaaag cagacggaca
    13021 cgaggaatat attcgtaaaa cgacaggctt ggtagtcgat ccgtacttct ccggcactaa
    13081 agtgaagtgg attttagata acgtagaagg ggcaagagaa aaagcagaac gtggcgaatt
    13141 gctgttcggt acggtcgata cttggctggt gtggaaatta acccaagggc gggtacacgt
    13201 taccgattac accaacgctt ctcgtactat gttgtttaac attcacacca aacaatggga
    13261 cgataaaatg ctggaattgc tcaatattcc acgctcaatg ttacctgaag tgaaaaattc
    13321 atcagaagtt tacgggcaaa ctaatatcgg cggtcaaggc ggtgtgcgta ttccggtcgc
    13381 gggtattgca ggtgaccaac aagccgctct ctacggtcat ttatgcgtga aagaaggaca
    13441 agcgaagaat acctatggta caggctgttt tatgttgatg cacaccggta acactgcgat
    13501 tcaatctgaa aacggtttat taacgaccat tgcgtgtaac gcaaaaggcg agccggaata
    13561 tgcgttggaa ggttcagtat ttattgccgg tgcgtctatt caatggctgc gtgatgagct
    13621 gaaaattgtt cacgatagct ttgacagcga atattttgcc actaaagaag atgactctaa
    13681 cggtgtttat gttgtacctg cctttaccgg cttaggtgct ccatattggg atccgtatgc
    13741 acgaggctca attttcggtt taacccgtgg ggcaaaccgt aaccacattg tgcgtgcgac
    13801 cctagagtct atcgcttacc aaacccgaga tgtgttagaa gcaatgcagt ctgactccaa
    13861 agcgaaacta caagcgttac gtgtggacgg tggtgcaacc gcaaacaact tcttaatgca
    13921 gttccaagcc gatattttag acaccaaagt tgagcgtccg aaagtgaaag aagtcactgc
    13981 tttaggggca gcttatcttg cgggtattgc tgtcggcttc tggaaagatt tggaagaact
    14041 gaaagacaaa gcggaaattg aacgcacctt cacaccggac ggcgaccaag aaaaacgggc
    14101 gaaacgctat aaaggttgga aaaaagccgt tcgccgctca ttagaatggg caaaagaaga
    14161 cgcagaagag taaaaacgca acctgtgcat aaacaaaggg agtataggca actatac
//
LOCUS       DANMGB010000053        14058 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.053, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000053 DANMGB010000000
VERSION     DANMGB010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14058
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.053"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            117..2009
                     /gene="mnmG"
                     /locus_tag="PXG19_001198"
     CDS             117..2009
                     /gene="mnmG"
                     /locus_tag="PXG19_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL6066503.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2104..2328
                     /locus_tag="PXG19_001199"
     CDS             2104..2328
                     /locus_tag="PXG19_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066504.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2341..2955
                     /gene="rsmG"
                     /locus_tag="PXG19_001200"
     CDS             2341..2955
                     /gene="rsmG"
                     /locus_tag="PXG19_001200"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL6066505.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3223..4671
                     /locus_tag="PXG19_001201"
     CDS             3223..4671
                     /locus_tag="PXG19_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6066506.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4694..5740
                     /locus_tag="PXG19_001202"
     CDS             4694..5740
                     /locus_tag="PXG19_001202"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL6066507.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5743..6381
                     /locus_tag="PXG19_001203"
     CDS             5743..6381
                     /locus_tag="PXG19_001203"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL6066508.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6400..7380
                     /locus_tag="PXG19_001204"
     CDS             6400..7380
                     /locus_tag="PXG19_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6066509.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7442..8782)
                     /locus_tag="PXG19_001205"
     CDS             complement(7442..8782)
                     /locus_tag="PXG19_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6066510.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8972..10045)
                     /gene="glpQ"
                     /locus_tag="PXG19_001206"
     CDS             complement(8972..10045)
                     /gene="glpQ"
                     /locus_tag="PXG19_001206"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL6066511.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10115..11560)
                     /gene="glpT"
                     /locus_tag="PXG19_001207"
     CDS             complement(10115..11560)
                     /gene="glpT"
                     /locus_tag="PXG19_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL6066512.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
     gene            11918..13513
                     /locus_tag="PXG19_001208"
     CDS             11918..13513
                     /locus_tag="PXG19_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL6066513.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(13600..13899)
                     /locus_tag="PXG19_001209"
     CDS             complement(13600..13899)
                     /locus_tag="PXG19_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066514.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(13886..>14058)
                     /locus_tag="PXG19_001210"
     CDS             complement(13886..>14058)
                     /locus_tag="PXG19_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL6066515.1"
                     /translation="FFSIAIIMFIAVTICGMMILSALKKQRHFMQSTLTELKLDIAAF
                     KSALTLKQNGEH"
BASE COUNT         4160 a         2893 c         2968 g         4037 t
ORIGIN      
        1 atttagtgtc gcatttagat cttaacctct ctaaaaatct atttcccaga tgatcccttt
       61 ttacgctaaa atatgcgttc atttttcagc agaatttgta agatagtaga agagatatga
      121 tttacaacca aatttacgat gtgatcgtgg tcggcggtgg tcacgccggc acagaagcgg
      181 ccctagcacc ggcacgaatg ggcttaaaaa ccctgatttt aacccacaat gttgatacct
      241 tagggcaaat gtcgtgcaac ccggctatcg gagggatcgg caaaggccat ctggttaaag
      301 agatcgatgc gatgggcggt ttaatggcaa aagcaacaga cgttgccggg atccaattcc
      361 gtaccctaaa caactcaaaa gggcctgcgg tgcgtgccac ccgtgcccaa gctgaccgtg
      421 tgctttaccg taatgcggta cgcactgcgt tagaaaatca accaaattta gatattttcc
      481 agcaagaagt agtggatatt ttggtggaaa acaaccgtgc agtgggtgca gttaccaaaa
      541 tgggcttaac gtttaaagcc cgtgcggtag ttttaaccgc tggtacgttc ttagcgggta
      601 agatccacat tgggttggat aactatgcag gtggtcgtgc cggcgatcct gctgcaacaa
      661 tgttggcaga tcgtctgcgt gatctgaatt tgcgtgttga tcgccttaaa acaggtacac
      721 cacctcgcct cgatgcccgt accatcaact ttgacgtact tgccaaacag cacggcgatg
      781 aggtgttacc tgtcttctct tttatgggcg atgtctcaca gcacccacgc caaattccgt
      841 gctacatcac ccacactaac gatcaaaccc acgatttaat tcgcaacagt cttgatcgca
      901 gcccgatgta caccggtatt atcgaagggg ttggtccacg ttactgcccg tctattgaag
      961 ataaagtaat gcgttttgcc gatcgtaata gccaccagat ctaccttgaa ccggaaggct
     1021 taaatacgat tgaggtttac ccgaacggga tctccaccag cttgccgttt gatgtgcaaa
     1081 tggggatcgt caactcaatg aaaggcttgg aaaacacccg catcatcaaa ccgggctatg
     1141 cgattgagta cgactacttc gacccgcgtg atttaaaacc aacccttgaa accaaagcga
     1201 ttgacggttt attctttgcc ggacaaatta acggcacgac cggttacgaa gaggcaggtg
     1261 cgcaaggttt gctggcaggg attaacgcag cgttacaggt tcaaggtaaa gaggcgtggt
     1321 atccaacccg tgatcaagcc tacaccggcg tgttggtgga cgacctctgt acattaggca
     1381 ccaaagagcc ataccgtgtg tttacctctc gtgccgaata ccgtctgttg ctgcgtgaag
     1441 acaatgcgga cattcgttta acaccaaaag cccacgaact aggattaatt gacgaggcac
     1501 gttgggtgcg tttcaaccaa aaaatggaag cgattgagca agaaagagct cgtttgaaat
     1561 ccacttgggc acatttgcaa atgccaaatc tggacgaatt gaacgcgtta ttggctaatc
     1621 ctttagcccg tgaagcaagc ggtgaagact taatccgccg tcctgaaatg agttacgaaa
     1681 agctgaccca aatcgcccta tttgcccctg ctattgaaga caagcaagtg gcagaacagg
     1741 tggaaattgc gatcaaatat cagggctata ttgagcatca atacaacgaa atcgaacgcc
     1801 ataaacgcca cgaaaacacc ctgattccgg tagagtttga ctacgacaaa gtcgaaagcc
     1861 tctccaacga agtgcgagct aaattgatgc aacaccgccc tgtctctatc gggcaggcaa
     1921 gccgcatttc cggcatcaca ccggcagcga tttccattct gttggtgaat ttgaagaagc
     1981 aaggaatgtt gaaacggggt gagctgtaaa tactacaagc ggttggtttt gcagaaattt
     2041 ttgcaaaatt gaccgcttgt attctttgga gaaggaaata cccgaactac cgccgtattt
     2101 ttaatgatat atctgcgtaa actcggtttt tcgccgttcg atcaccaaat gtttgcccaa
     2161 ccttcgtggt atttctgcaa tgcacttgtt cataccaatt atgaaaatct gcgacaaggt
     2221 gtatttgtga ctaaagcgta tttagtgatg tttcttgaaa atttattgtt tgaaaaaagt
     2281 cattcgttaa gtaatcgggc attgcgtatt aatgaaaata atgattaagg aatttgcaaa
     2341 atgttagcta aattaaaccg cttgcttgct caagccgaaa taaatttgac cgatcaacaa
     2401 aaagagcagt tagttggttt tgtgagatta ttggataaat ggaataaggc gtataacctc
     2461 acttccgttc gcaaccctga tgaaatgttg gttaaacata ttttggacag ccttgttgtt
     2521 agtcgtcatt tacaaggcga aacgtttatt gatgtcggca cggggccggg gctaccgggc
     2581 attccgctgg cgattgctaa ccctgataaa cagttcgtgc tactagacag cttaggcaaa
     2641 cgcatcactt ttatcaaaaa tgcgttgcgt gagcttggta ttaaaaacgt taccccagtg
     2701 caaagtcgag tggaggaata cactgaaagc cagtttgacg gcgtattaag ccgagccttt
     2761 gcctcgctta atgatatgat cgactggtgt tatcatttac cgactgaaaa cggtaaattt
     2821 tatgcattaa aaggcgtgta tgatgagcag gaaataattg aaatcaaaca accgattcag
     2881 ctagtggaag tgattaagct tgaagtacct gagttggtag gagaacggca tttagtagtg
     2941 ttgaaaaagc cctaatacat tggaagttta atgatacaag cggtcgaatt tgtaaatttt
     3001 tttgcaaatc tgcctgcttg tgttaactat ttttcataaa gcatacctgg ttaataaggt
     3061 gtgctttttt tataacctat tatttcatct gatttatttc tattttgtga tgtgcttcac
     3121 aaaaacaaaa aaacataatg tagtaaaaaa tattcgtaat tgaagccctt atttctttac
     3181 ctgaaaataa gcgaacttaa ttatataacg aggaggttcg taatgaacag ggtaacaaat
     3241 aaggcagatg agtttgctaa actcagtacg tttgaacgta ttgcttatgg tagtggcgac
     3301 ttagcccaaa atttagtttt tggtacagtt ggtggtttct tactcactta cttaactact
     3361 gtaaacggca tttctgccgt agcaggagca acgattttct taattgtaaa atggggaaat
     3421 gtgttttggg atccgtttgt cggtgccttt attgacaaaa gcaagccctc agcacagggt
     3481 aaataccgcc cgtatttact gaaatttggg attcctcttg tggttttagc ttcactacta
     3541 tttcttcctc ttgaatcagt acgtggctca gtgatttatg ctttcctttc ttattttgcc
     3601 actgcgatgg tttattcttt tgttaatatt ccttatggct cgctttctgc ttctcttact
     3661 cgagacacag acgaaattgc taaattaacc acaacccgta tgacaatggc aaatatcgct
     3721 aatttgtttg tttatacctt attcccactt tttgtgcagt tacttgcacc acatgccgaa
     3781 ttaaaaaaca ccggcttttt cggtattgag ctctatttag gtgattatat gtctgctgct
     3841 gcaggccctg cttggtttaa ggtttatgcg gtctatatgg taattggatt tgtggcgtta
     3901 atgctctctt attttggtac taaagagcgg attattccaa cagcggaaga aacagataaa
     3961 gtcaagtatt cagatttagt taatgaactc aaacgcaatc gtccattaca gattttaggg
     4021 ttattcttct taataggttt tacttttatg ttcttcggaa atacggtgtg gcctttttac
     4081 ctaaaatata atattgggca ttctgagtgg attgcctccg tcggtttatt aggctctatc
     4141 cctgggattt tccttgtatt cttatggccg aaactacgtc gcactatcgg taaaaagaac
     4201 tttttctatc tatttttagg gattttcgtt ctagggcaac tttgtctatg ggtatggcaa
     4261 tttgactcct tcaaatactc tccaacctta ggctatatcg gtcgtttctt acaacaatgg
     4321 ggattaactt ctgctaccgg ttttatgtgg gcgttagtgc ctgaggttgt tacctttgga
     4381 gagtttaagt cgaaaaaacg tgtagcaggt attattaatg cgttaatggg cttgttcttt
     4441 aaaatcggct tggcgttagg cggtattatt ccgggttata ttaatgcggt ttatggtttt
     4501 aacggctcgc ttttggctca aaccgaagag gctttatttg gtatcaatct ttcaatgatt
     4561 tgggctccaa ttattttagc gattattgca ggatttgtga tgagtcgcta tccgttaagc
     4621 gatactgata ttgatcatat caacgaaaaa attactgctt attccaaata atttgagtat
     4681 aggagaatag attatgcaaa ttcaaaatcc agttttaccc ggtttcaatc cagatccatc
     4741 tattgtgcgt gtgggtgata cttactacat tgcaacttct acttttgaat ggtttccggg
     4801 agtgagaatt cacgaatcga aagatttagt gcattggaat ttagttaaaa atgtcttaga
     4861 tacaaccacg ttgttagata tgcgaggcaa tccctcttca ggtggtatct gggctcctga
     4921 tctttcttat gcggaaggta aattttggtt ggtttatacc gatgtaaaaa ttacagacgg
     4981 tgcattcaaa gatatgacta actatctaac tactgccaaa gaaattcaag gtccttggtc
     5041 agctccgatt aaattgaatg gtattgggtt tgatgcttcg ttgtttcacg atgatgatgg
     5101 gcgaaaatat ttagtgcaac agacttggga tcaccgtgaa tatcatcacc cctttgacgg
     5161 tattacgtta acggaatttg atgttgccac aatgaaactc aaacctgaaa cccagcgtac
     5221 gatttttgaa ggtacagaag tgaaattggt ggaaggtcca catatttata aaattaatgg
     5281 cgaatattat ctgtttgcgg cggaaggcgg cacagtattt acgcatcaag aagtagtggc
     5341 tcgttctaaa acattggagg ctcactcttt ccaactggct ccaaatacac cgtttattac
     5401 taattttgat acacctaatt cttacctaca aaaacaaggg cacggttcat tagttgatac
     5461 cccaagtggt gaatggtatt acgcttccct cacagcaaga ccttggaatc atgcaacaga
     5521 atccgcaacc gatcctcgtg gttggtcaac attagggcgt gaagccgcca ttcaaaaagt
     5581 agaatttgat caagacggct ggccttatat tgtgggtgga cacggtggaa aaacctttgt
     5641 agaagcccca aaagatgcaa tttttaccga agctcctatt gatcattctc aacacgatga
     5701 gtttgatagc tcaacgttag atattaactg gaacacttaa gagtgccttt tagtaaagag
     5761 atgggcgaag ttggtaatgg tgttttaaaa ttgattgggc gaggctctct tgcaaataca
     5821 cacgatttat cgctaatcgc acgccgttgg caagccttct attttgatgc ggaaaccaaa
     5881 gtgaaattta caccgttttc ttatcaatct atggcaggtt taactaacta ttacaatcac
     5941 tcacactggt cttggatttt catcaccaaa aatgatcaag gacaacaggt gattgaagtt
     6001 gcagaaaata aaggtggact cagaaatggg caatatactt cttaccttaa agataaagca
     6061 attgtcattc ctgatggaac ggagtatgtt tggtttaaga ctaaagttcg gaaagaaact
     6121 taccgttatg aatattcatt cgatggcaaa caatggcaca ctattccggt tgaattagat
     6181 gcggcagtgc tttcagatga ttatgtgtta cgcagttatg gcggtttctt cacaggagct
     6241 tttgtcgggc tggctgcagt ggattactcc agttatgaat ctacagcaga atttagctac
     6301 tttgactata aagagttagg cgataagcaa cttacagacg gctcattctc ttgggaaaaa
     6361 tctgaaagtt gctttggcta aaatgaggag aatatcacaa tgaaacaacg cagatttggt
     6421 aaaaccaaca aaatggtgtc agaaattggg ttaggcactt ggcagcttgg gacgaaatgg
     6481 ggtgaaccgt tcaatcatca agaggcgatg gcaattttag aaaccgctta tgagcaaggc
     6541 atcaatttta ttgataccgc tgatgtgtat aacaacgggc aaagcgagaa agccattggt
     6601 gatattttga aaaaataccc tgactttttc tatgtcgtta ccaaatgtgg acgtgcgtta
     6661 aacccgcata ctgctgaaat gtacacgcca caggcaatcg aaaaatttgt tgatggtagt
     6721 ttaagccatc ttggcacgga aaagttggat atgattttgc tccactgccc gccaacgttg
     6781 gtttatcgca atgatgagat ttttacgaaa ttggaacagc ttaaagccgg cggaaaatta
     6841 atagactacg gtgtgagtat cgaaacggca gaggaaggct tgttggcaat ggagtatgac
     6901 attgcggcaa tggaagttat cttcaatatg ttccgcttaa aaccattgga gcaactcttc
     6961 ccaaccgctc agcaaaaaaa tgtgggtatt atcgcccgtg tactgttggc aagtggtttg
     7021 cttacaggca gatataatgc ctgcacccaa tttggcaaag acgaccaccg cacatttaac
     7081 cgcaatggtg aagccttcga taaaggcgaa accttttcgg gtgtggatta tcaactcggt
     7141 ttacaagcgg tggaagaatt gaaagcccta ttcggcacgg aagatttaat tccttacgcc
     7201 ctacgttggg tattgatgaa tgaagctgtg agtacagtaa tcccgggagc aagtaaggtt
     7261 tcacaagtaa ttactaacgc agcggtggat aatttccctc cactcactga aaatgaaatg
     7321 caaaaagtgg aagatattta caaccgctta attcgcccaa gtgtgcatca tttgtggtaa
     7381 tttatccaac gctataaaaa atggaactct aacttgagtt ccatttttgt caattttagc
     7441 cttaaacctc taactgttta gaggttttct taaacagagt caatgcaata aacgcaaagg
     7501 ctaagaaaca ggaaaggatc agggcataga aaccaccgtc ccagccgaac atatcaacca
     7561 gtttacccat cacataacct gcacttgcag agcctaacaa gtagccgaat aaaccggtta
     7621 aacctgttgc tgtaccggtg gcaacacgag gcactaaatc cgctgcttgt aaaccgatca
     7681 tcatcaccgg cccgtagatt aagaaaccaa tcgccactaa gcagatgttg tcgattaacg
     7741 ggttgccggc tgggtttttc cagtacacca caatcgcaat taacacacca gcaaggaata
     7801 acaacatcgg cggcgcacgg tgacctttga atactttgtc gcttaaataa ccgcttgcaa
     7861 gcataccgaa gataccggca tattcataca agaagtacgc ccagctctgt ttatccacag
     7921 agaaatgttt cacttctttt aagtaagtcg gtgcccagtc gataatgccg tagcgaatga
     7981 aatagacaaa cacgttggca atcgcaattg cccacaggaa tttgttgttt aaaatatatt
     8041 tgtagaaaat gtctttggaa gagagtgtgt gggcagactc cactttttcc accactttct
     8101 cgcctttgta ctcatcaatc ggcggtaagc cttgagattc cggcgtatca cgcatcaaat
     8161 agaacatcac aaacgccagt acaatcgcaa tcaacgccgg cagatagaac agggattgcc
     8221 acacgccaaa aatagataag cctaaaatcg ccaacggccc gattaaaccg ccgcccaagt
     8281 tgtgcgacac gttccaccag ctccaccaca cgccacgttc agaggttgag aaccagttgg
     8341 tcatcgtttt cgcccccggc ggatagccca ttccttggaa ccagccgttt aacgccgcca
     8401 aaatgatcat aattggaata gacgaaagca cgcccggtac taaaccgaac accagactca
     8461 caatcgctga accgagcaag ccgatagtga taaagtattt cgggttagaa cggtcggaaa
     8521 cgttacccat aataaattta ctgaagccgt aagcgagtga taatgccacg cccaccgtac
     8581 ctaagtctgc tttggtgaag ccatattcat caatcaaata cggcattgcc aacgagaagt
     8641 ttttacgaat taaataatat gccgcatagc cgataaagac gcctgcaaac acttgccaac
     8701 gtaatttgcg atattccgca tcaactctgc tggcttccac tttttgttct gctggtggag
     8761 aggcttttag aaaggaaaac attttactac tcctttaaga atgaaatcct atggctacta
     8821 taatctttca tttggagcag aaaaagtgga tttttgaaaa tttgtgagca agattaaaat
     8881 tattttgagc gaaaacgaaa agcggttgaa tttccttctt tttttgcaaa aaatttgaga
     8941 aatctaaccg cttgtttcac ttaaaaatca gctatttctg ctttttcaaa aattccacgc
     9001 ccgtatcagg gaagtcagta aagacgcctg ttgcacccgc tttattcagc agggcatcgt
     9061 acatttcatc gacattttgg aaaaagtccg gcagagcatc tttgcgcacg gtgtatgggt
     9121 gaagttccat tttgtacttc gccaactctt tcactaatgg cgtgtaaaca atgttgccga
     9181 ctttagattt ttctttatcc accaacatat accagcccgg gccgacacca tcggcatatt
     9241 ttgccacttc tgccatcgca ccgtctttga acatccagtc gtagtcgtaa ttaacccagt
     9301 tgccgttttt atctttctct tcggtttcgt gccaatcggt gtaggcaact aactgcacca
     9361 attttacgtc catacccagt ttcggtagta attcggtttt gatccgtttc agctcgttga
     9421 aatcgaaggt ttgcaggtaa attggtgagg ttttgctgtc gtagccatat tttttcaaca
     9481 ctttcagggt ttcgagtgca atgtctttac cctctttatg gtgcaaccaa ggggctttaa
     9541 tttcaggata gatcccaatt tttttgccgg ttgatttctc taatccttga ataaattcca
     9601 gctcttcttc caaagtgtga atggtgaaat gggactgcca catcgggaag cggttcgggt
     9661 aaacttgtgc ctgcttgccg tctttcacct caaaattctc ggtcatttca agggttttaa
     9721 tctcatcaag ggtgaaatcc accacataat aacgaccgtc tgctcgttta cgctcaggga
     9781 attttttcgc cacatcagtt aaaccgtcta aaaagtggtc gtgaatcaca atcaggcggt
     9841 tatctttggt catagcaaga tcttgctcta aatagtccgc ttgttgcccg aatgctagag
     9901 ctttagattc aagcgtatgc tcaggtaaat aaccgcttgc accacggtgg gcaatcacta
     9961 atttatcaga ttgttgtgca taggcaccca atgctgtcgc ggacaatgct aatgcagcaa
    10021 ccaatgtttt gaatttaaat ttcatagaat tacctcatat aatgtaaaaa taaaaggaag
    10081 aacaaaaatg tccttccttt tgataagtta tttattattt accatagtga tcttctaatt
    10141 ttgctttgtg cttgccttct tcaaccatca caatgaaggt taagagaatg gctaatacac
    10201 caccaccgat catcacgtag aaaccgccgt cccagccaaa tttatctgct gcccagccaa
    10261 ctactgcaga ggctgccact gtaccaccta agtaaccgaa taaaccggtg aaacctgctg
    10321 ctgtacctgc tgcttttttc ggtgcaagtt caagggcgtg taagccaatc aacattaccg
    10381 ggccgtagat taagaaaccg atagtggtca tccaaatgaa gtccattaat tgatatgggt
    10441 tttcatacca agcatggcct gcatattgtg caatttcaga ttccggtgtc gcagggttga
    10501 gccagaacgc aaccactgct gcggtggtaa gaatcataaa gatgaaaccg gttaaaccac
    10561 gtttgccttt gaacagtttg tcagagaccc aaccacagag taatgtacct ggaatcgcag
    10621 ctaattcata aatggtatat gcccatgctg tacctttaat gttgaagtgt tttacttcgc
    10681 ctaagtacac cggcgaccat ttcaatacgc catagcggat taagtaaacg aagacattcg
    10741 caatggcaat gtaccataac agtttgtttt tcagcacata agtcacgaaa atctctttgg
    10801 tgcttaaatc gtgttcatag gttttttcgt tatagtcgtc agggtagtcg ttacgccatt
    10861 tttcaactgg cggtaaaccg caagattgtg gagtatcttt catcacaagg tagattggaa
    10921 tagctgcgat cattgctgca attcccggga aataaagggc ttgttgccat acatcttttg
    10981 ccgttgcttc tacaccatac tcactgaaat agagcgcact tgctaatagc accatcgccc
    11041 ccggcaccat accgcctaag ttgtgagcgg tattccagat agaaacgata gtaccacgct
    11101 cagatttaga ccaccagtga accattgttc gtccacacgg tggccaaccc ataccttgaa
    11161 accagccgtt taagaagatc attacccaca ttactaaaat gcttgatgtt gcccaaggca
    11221 ttaagcccat aagggtcata catagacctg aaagtaacaa tccggtcggt aaaaatactt
    11281 tcgggttaga gcggtcggac attcctgcca tcacgaattt tgataaaccg taggccaggc
    11341 cggcagctgt accaatcaca ccgagatcgg tttttgtata cataccagct tcaatcaagc
    11401 ctttttgtgc taagtcgaag tttgcacgca caaaatagta agcggcatag ccgaagaaaa
    11461 ttcctgcaaa cacttgccaa cgcaagaatt tatatcttgc atcgactttg tccgccggta
    11521 attccgcaat gtgcggagcg ggtttaaatg gaccaaacat agtattctcc aatattactt
    11581 agtaaaacct ctgagtaatt cctttttagg aaattaggga agcaataata aatgaaaata
    11641 aaaaatgaca aagttatttt ttataaaaat gtgattcatt tcacaaaaaa tttaccttaa
    11701 accacaaaaa atgattgaaa aagaaaatca aacatcagta tctctagcga taaaactctc
    11761 ttcttatgta cagagaaaga accataaaaa gtacaatata gaaatatttt gtgacataga
    11821 tctaattttt aaacaaatgt ctttgaagtc attttatttt cgtttatgct aattaagtaa
    11881 tgattaaatg ttttaattcg agcaaaagga gcaaaaaatg caaagacatg aacagctagc
    11941 tcaagtacaa caaacgcaaa aatgggattt tattattatc ggtggtggcg caagtggttt
    12001 ggggattgcg gtagatgcag cttcccgtgg ctataaaacc ttattattag aaagccatga
    12061 ctttgcgaaa ggtacatcga gccgaagcac aaaattagtc cacggtggcg ttcgctatct
    12121 tgcaaatggc gatgttgcac tcgtgagaga agcattgcgt gaacgaggtc gtttagctaa
    12181 aaatgcagct catttattta aaaaccaaag ctttattatt ccaaactaca aattcaaaga
    12241 ctgtgtaatg tatcgtgttg gtttaggctt atacgatatg ctttcaggca acctgagttt
    12301 aggaaagact gaaaacatca gtaaaactga agcgaaaaga cgtttaccaa ccttaaatga
    12361 tactggttta cgtacaggca ctgtttatca agatgggcaa tttgatgact cacgtcttgc
    12421 agtgaatatg gcacaaacgg tagtagagca cggcggtaca gtactaaatc acgccaaagt
    12481 gacttcactg cacaaaacgc cacaaggcaa aattgatggg gtgactttct acgatgaact
    12541 caatcaacaa gaacatactg ttttcggcac tgcggtgatt aacgcaaccg gcgtatttat
    12601 gaatgatatt ttaagtatgg atcacggtag cacgaaaaaa tttgtcgtac caagccaagg
    12661 gattcactta gtattagata aatcattctt accaagtaat gatgcgttaa tgattccaaa
    12721 aacctctgac ggacgagtgt tatttgctgt accttggcac gaagtgttag tcgtagggac
    12781 aacagatact ctgattgaaa atccttctta tgagccaatt ccattggaac aagaggtgaa
    12841 ctttatttta gagacagccg cacaatatct gacaaaaaaa ccaactcgtg atgatgtaaa
    12901 agcagtcttt gccggtcaac gtccgcttgc ggcaccggaa aaagaaggtc aaagcactaa
    12961 agaagtatct cgtagtcaca aagttctcac tgatgcaacc agcggtttga ttacgattac
    13021 aggtggtaaa tggacaactt atcgtcaaat ggcagaagat accgtagaag aagcgttaaa
    13081 agtccactct gaactaggca ataaaccttg tgtgaccgtc aacttaccga ttcacggtaa
    13141 tattccggca gcacaagtga atctacaaga tcatctatat gtatatggct cagatattcc
    13201 acagttacgc gccttaatga ctgagacccc ggaatatgca caaaaaatcc atccgagact
    13261 agattatacc gttgcagaag tgatctgggc agttcgccac gaaatggcac aaacggttga
    13321 ggatgtatta gctcgccgtg ttcgtttgct cttcactgat gcgagagcgg cgattgatag
    13381 tgcagcaaaa gtggctgcta ttatggcgaa agaattaggt aaagatgaaa tgtggcaaca
    13441 acagcaagtt atccagttcc ttgatgttgc gaagcactat ttattggtag attatcagcc
    13501 acagccaatc taatacgcta aaagcaagcg gttaaaatcg ataaaaatat tgcaattacg
    13561 ttatttgcaa ctttttaaac cattttaacc gcttgtatat tagctatcat ctcttttatg
    13621 tttctgttgt aataaaaaga atgctgttaa ccccaataca gaaaagctaa ttcctttcat
    13681 actcaataat ctttttacca aaaaatctaa tgcaatggtt ttaactgccg gtgaattgac
    13741 cagtgcaagc cctgtttgtt tcacttgttt aaaaggctgc ataatctcat ttttggtttt
    13801 attggtttcc gctttaaatc gcattctaag tgcattacct tttagaacta gaagttcctt
    13861 ttcggttaat ttaagctctt ccattttaat gttctccatt ctgtttcaaa gttaaagcac
    13921 tcttaaatgc ggcaatatct aattttagct cggttaatgt actttgcata aaatggcgtt
    13981 gttttttcaa ggcagaaagt atcatcattc cgcaaatagt cacagcaata aacataataa
    14041 tggcaataga aaagaata
//
LOCUS       DANMGB010000054        13894 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.054, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000054 DANMGB010000000
VERSION     DANMGB010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13894
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.054"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            29..2328
                     /locus_tag="PXG19_001211"
                     /pseudo
     CDS             29..2328
                     /locus_tag="PXG19_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2406..3107)
                     /locus_tag="PXG19_001212"
     CDS             complement(2406..3107)
                     /locus_tag="PXG19_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL6066516.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3112..4521)
                     /locus_tag="PXG19_001213"
     CDS             complement(3112..4521)
                     /locus_tag="PXG19_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL6066517.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4523..5254)
                     /locus_tag="PXG19_001214"
     CDS             complement(4523..5254)
                     /locus_tag="PXG19_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL6066518.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5398..7002)
                     /locus_tag="PXG19_001215"
     CDS             complement(5398..7002)
                     /locus_tag="PXG19_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL6066519.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7292..8383)
                     /gene="ychF"
                     /locus_tag="PXG19_001216"
     CDS             complement(7292..8383)
                     /gene="ychF"
                     /locus_tag="PXG19_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL6066520.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8569..9156)
                     /gene="pth"
                     /locus_tag="PXG19_001217"
     CDS             complement(8569..9156)
                     /gene="pth"
                     /locus_tag="PXG19_001217"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL6066521.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9229..10104)
                     /locus_tag="PXG19_001218"
     CDS             complement(9229..10104)
                     /locus_tag="PXG19_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL6066522.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10326..11906
                     /gene="prfC"
                     /locus_tag="PXG19_001219"
     CDS             10326..11906
                     /gene="prfC"
                     /locus_tag="PXG19_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL6066523.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12165..13739
                     /locus_tag="PXG19_001220"
     CDS             12165..13739
                     /locus_tag="PXG19_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066524.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
BASE COUNT         4176 a         3084 c         2723 g         3911 t
ORIGIN      
        1 ggctatttat tctagaagga ctctaaacgt gttaaagaaa aattatctca ctgtatcaat
       61 tctccttgcc attagtggag taggctacgc taatgaaatc tctttagaga ctattactgt
      121 tgatggaaat acgccttcaa ccaaagggaa attactaggt ggtgaactaa atagcaatga
      181 atctgttgtt gatgaaaaaa attaaaacaa ggtagtatta cattaggtaa cgctttatct
      241 ggtgaattag gcattcattc aagccagttc ggaggcggtg caagtacccc aattattcgt
      301 gggcaagaga gtaaacgtgc aaaaatctta caaaataatg gcgaaaactt agatatgtcg
      361 ggaatgtctc ctgatcatgc agtaaccgta gatgcgctac ttgctaaacg tattgaaatt
      421 ttacgtggtc caactacttt actttacagt gcaggtaata cggcaggtgt aattaatgtg
      481 gtagacaata aaattccaac cgctattccc gaaaaaggct atgaggggca atttggtgtg
      541 cgttttggct cagccagtaa agagcgttta acctatgcag gctcaacctt tgcccttgga
      601 aatcatttag ccttgcgggt acagggaatg tataacaaag cttccgaata ctatgctcca
      661 cactttacga ttgaaggcaa accttaccac cgcgtaccag atagcgatgt acaatcacaa
      721 accggcacag taagcctttc ttggattgga gagcgaggac atcttggtat tgcttacact
      781 gatcgccgtg ataaatatgg attaattggt cacacacaca aatacgatca ctatactatt
      841 agtattattc gccaagccgt tatgtttgca aaaggttatt tacgttttta tccgcacctt
      901 gcagaagaag gagatattga ctataacaac cctggtatcc gtttactgca tactcatatt
      961 ccgggaggct cacattatgg acaagatact cacgagcacg gcaaaccttg gattgatatg
     1021 cactccaagc ggtatgatat tgatggaagt ttgcaaaatc cacttcctgg ttttgaagaa
     1081 gccaaaatat cagctaacta tgtagattac tatcatgatg aaaaagatgg aaaaagagtt
     1141 gaaaattact tcaagaacaa aggaaaaaat ctacgtttcg aattggttca caaagagtgg
     1201 aaagggctaa aaggagctat tggtgtgcaa tataccaacc aatctacctc agcacttgca
     1261 cttgaagctt cacgagctgc aaaagtattt aataaacagc ctttactcaa taatccaaaa
     1321 acaaaattat ggagtctctt tgcgattgaa cgccttaatt taggtgactt tacctttgag
     1381 ttaagtgggc gggcagaacg tcaaaaaata gcaatggatt atgatgtgaa attaattgat
     1441 cgctggctag gctttaatac acctatgcca aacttggacc cacataaaga caaaggttat
     1501 tcttatagct ttgcaactca ttggtatttc gcaccaaacc ataagttaac attaaatgct
     1561 gcacatcaag aacgtttacc taatgctcag gaactctatg ctcatggtaa acacattgct
     1621 ttaaatgcat ttgaggctgg caataaaaat ctaaaaaaag agcgttctaa ccaaattgag
     1681 ctatcattag cttatgttgg cgacaaatgg gattataaat taaatctcta ccacacccgc
     1741 tatggcaact atatttaccc attaactctt aatgataatc gtggacctaa atcttttacc
     1801 gatgaatata acttgaaagt gaatagatat tatcaaggcg aagctcgttt tagtggggca
     1861 gaaggcgaaa ttggttatct atttacacca aattatcgct tagccgtatt cggagactat
     1921 gtccgtggaa agttagtcaa cttacctaat attgcaatga gttacaacat ttggacaggt
     1981 gaagttgaca aatgggcttc tcagccagac atttctgcac ctcgtatacc accactacgt
     2041 ttaggagcaa gatttaatgc tgacttcaac ctaaactggt ctggaatgtt agaatattac
     2101 cgagtatttg ctcagaaaaa agtctcgaaa tacgaacaag ttacccctgg ccatcatcaa
     2161 gtaaaccttg gcgtaaccta tagtaatcat tttaatcaaa cagaatacca agtattcctt
     2221 aaagtggata acttgcttaa tcagaaaatg taccaacatg cctcatatct accacatatt
     2281 ccacaaatgg gtagaaatgc aatgcttgga atgaatatca gtttttaatt tgtaaatctc
     2341 tacaaaaata taaccgcttg taaatttcta tctacaagcg gttactttca gtggattttt
     2401 tgcaattaga gatcgtcaat taccaagtaa attttattta ccgggccgtg aacgccaact
     2461 actttaatca actcaatatc cgcagtcgcc gatgggcctg agatgatatt cacacaagat
     2521 ggcattcttt cacctcgttg ggctttttcg tgcagaattt gtgcaagctg tgccacacga
     2581 ggtaacactg tacttttgcg taacacaacc accgattttt cgggcaataa gctcactgaa
     2641 cgcccaaatt ctttatcgga aaacagtaca ataccgccag actctgccaa gccatattca
     2701 ccgtaaacca caccgatatt agcagttctg gctttttcaa agttggtttc agcttggttg
     2761 aaatcccaca catagctgtc ttcgtatttt gcttgaatgg ctgcggtaat cccaagatcc
     2821 tttaaacgtt gatcgttatt cacgatcaca ctcgccccgc catatttttc acaaatatca
     2881 ataatggctt gtggtaaatc cgcctctttt gcctctacta catctgccat catcactcgg
     2941 gcaaaatcga taaactcttg gcaaagttgt ggttgagggc gatcggttaa acgggtaatc
     3001 gcgtggttgt tttccaacac aggaattggc tcaggcacat tttggcgtgg tctgcccata
     3061 cgctgtgcca atttatttaa gaaattttca cgattttgta aatccatttt cttatcctct
     3121 gttattaaac cattcacgga aactttcgcc ttcggcagtc ggtaaatcac gggctttcgt
     3181 ccattcacct aacgccccaa aattcaccgg tgctttgccg tttttaatca atttgcttgc
     3241 cactttcgcc cccactttta cgccgacttt ccaaagggtt gggtgtgagt tagcgaagtt
     3301 aaagccaaaa atagacaagc gttctgccat tggcgttaag ccggcatccg caattttctc
     3361 acggtgtttt aagataagct gtgccagtgg aattttcact ggacaaacac tgttacaagc
     3421 ggtacaaagt gagcaagcat acggcaattc tttaaactct tcgtagccac cgagcaatgg
     3481 cgaaataact gaaccaatcg ggcccggata gattgaacca tagccgtgac cgccaatttg
     3541 gcgatacgcc gggcaagtgt tcaaacatgc accacagcgg atacaacgca acacttcttg
     3601 gaattcgctt tctaagattt tagaacgacc gttatcgaca atgaccaagt ggaactcttc
     3661 cggaccatcg gtttcgcctt caagtctagg acctgtcagc caagtgttgt aagcggtgag
     3721 ttttgcccct accgcactgc gagccagcat ggtaattaat acatcaacct ctttaaaggt
     3781 tggggcgata cgttccatac ccattactgc aatatgcgtt ttcggcacag ttgttgccat
     3841 acgcagatta ccttcgttgg tcactaaaca aaccgagccg gtttccggca ccgcaaagtt
     3901 acagcctgaa ataccgatgt ctgcctctaa gaaatcttca cggatttttt ggcggacgaa
     3961 tgcagtcatc tcttcaggtg tttccgaacc ttgataacct agcacatcgt gcatttcttg
     4021 gcggattctg tggcgatctt tgtggattgc aggtacaaca atatgagaag gtttatcgcc
     4081 cacaatttgc aataaatatt cgcccaaatc ggtttcaacc actttaatgc cttctgcttc
     4141 taaaacgtgg ttcatcccaa tctcttcggt taccatcgac ttcgatttta cgattttctt
     4201 cgcattttta gctttcgcca cgtttttgat gtaatcagtg gcttcttcgg cggtttcggc
     4261 aaagaaaacg tgtccgccgt tttgggtgac tttttcgctt aattggtaga gataagcgtc
     4321 taaattggct aaaacgtggt tacgaattgc tttcgcatca tcacgccact cttcccagtt
     4381 gcccagctca tccaccatac gctgacggtt tgcaccgatt gtttcctgag ccttaactaa
     4441 ggctttacgc acaatctcgt tattaacttg ctgctcaaca cgttgtttaa acggcagggt
     4501 gttagtttgt aaataagaca tcttattttc ctccctgcat taacacttcg gcaatgtgca
     4561 tcactttgat tggcttacct tcacggctta aacgaccgcc aatgttcatc aagcagctta
     4621 catctgcccc gattaaataa tccggctcat cggtatctac atttgcgact ttctctttta
     4681 ccatctcgcc ggaaatttct gccattttga ccgagaatgt gccaccaaaa ccacagcaag
     4741 tttcttggtt tttgattggt aataactcta accctttaac gtgctgtaat aaagcaatag
     4801 gctcatcttt aatccccagc ttacggaata agctgcaaga cgggtgataa actgctttgc
     4861 ccggtaaata agccccaaca tctttcacgc ccagtttgtt cacaataaaa tcggttaaat
     4921 catagaaacg atcagccact ttcttcgcac gttctgccca ttctttttcg ccaaagcgtt
     4981 caaaatgatc cggataggtt ttgatcgcat atacacaaga acctgccggg gcgacaatcg
     5041 ggtaatcatt agcttcaaag gtttcaacca agtttttcat acctgctaaa gcttgcttag
     5101 tgtaaccgct gttgatcgca ggttgtccac agcaaccttg tttttctaag aaagtgattt
     5161 tacaacctaa tttttccaat aaaagcacag tattttttgc aacccctgct ttcattacat
     5221 ctgcaatgca ggttacgtaa aaattaacgt tcataaagaa ctcccacagt aaatataaat
     5281 aagaattaaa ctcaaaaaat gccgttctaa gacggcgaaa ggaagaggtg gatttgcaaa
     5341 aaatttgcta aatctcaccg cttcctttct aaatcaagta agctgattat taactcatta
     5401 taggttatag aacataggta ctataaacaa tgccgaaatc gcagcaataa cgccatacac
     5461 gaacattggc acggctgttt tcttaataat attgccttct tgtttctcaa tgccggtaac
     5521 agaacacaca gccacgatgt tgttaataca caccatattc cccattgcac caccaactga
     5581 ttgcaatgca agaattaagg taacagataa cccgacttgc tgtgccgttg catattgtac
     5641 tgttccgaag gttaagttag ataccgtatt tgaccctgag aagaacgcac caattgcacc
     5701 taagaacgag gcaaataatg tccaagattg accggtaaat tctgcgaagt ttttaccaat
     5761 gatctgaacc attgagtcta caccaccaat taacattaat tttaccatca caatggcacc
     5821 taaaagtgct aagaatggtt ttttcacttg tttaaatgaa gtgccaaaaa tctcttgagt
     5881 atttttacct gataccgaga aaatcggtaa gcaaattaat acggtcacaa caaatggaat
     5941 caacgcagga acatacagta atttatagct agttgctaca ttcgtaccta aaatattttt
     6001 cagtgcaaaa attaagcctt ggctaatttc aaagttagcg aaaccaagcg aactgacaat
     6061 ccaagctgtt gcatcattta gcattgcttt taatggaagt tgctgaatac gggtgattac
     6121 caaaatgaag atcagtaacc ctgttggtaa taatgctttt gccacttcac caaaggtcgc
     6181 tttatcgccg tcaaggtggt tctcgctttt cgctaaacca atacccatat ttgctaccca
     6241 gactgacacc aataaaccaa tcgccccggc aactaatgat gggaattcgt agttaaattg
     6301 agcaataatg aagtaaggaa tgacacaggc aaaaatgctg atataaataa acacgatatt
     6361 ttgacgaatt tctttccagc tcacaattaa acgcaatgcc ataactggaa taataaacgc
     6421 agcaatagag tggatcagtg cagtaataga accaatttca agcacttgtg catcggttag
     6481 taaaccatct tttaataatg gtcccatacc aaaccaagtt ggtgtgccaa ccgcaccaaa
     6541 tgacaccggc acagagttca ttactaaggc taacattgcc acttgtaacg gtttaaagcc
     6601 taaaccaacc agaattggag ctgcaattgc cgccggcgta ccgaaacctg atgcgccttc
     6661 aatcataaat gcaaatgccc aaccgataat catcaactgt gccaccggat tcgggttaat
     6721 tgtccctaac catttacgca tagtgttggt tgcacctgaa acttcagaga aacggttaaa
     6781 taaaatcgcc ccgaaaataa cggtaattgg ggttaataca tcacctaaac cggcaataat
     6841 attggcaaag attaacgtgg tatcattacc aaaataggta agctgaagca caaaaattaa
     6901 taacgccgta agtggtaaag ccacataaga cggtaacgcg ttacgtttta ccattaaata
     6961 aatgagcaaa acaattggaa atacgctcag gaatagagcc atactgcacc tctttatatg
     7021 attataaaat gacctaactg gtcggatagg tgcgaattgt actcttaaaa aaaactaatg
     7081 taactaggtt gttacaattt tgtgatctag ctcgcatttt taatgattgt atggttaaaa
     7141 aagagccata tttattttca tttaatactt aatagttagc cctatttaag acatttttac
     7201 cgaatcgagc aatatgcaat taattaacaa aaaaaggccg cttgtagatc acagatcaac
     7261 aagcggtctt ttttaggcaa aaatttgcaa attaaacatt gaaacggaag tgcattacat
     7321 cgccgtcttg aacaatataa tctttacctt ccaaacgcca tttacccgct tcttttgcac
     7381 cggcttcacc tttattgtct atgaagtctt ggtaagcaat tacttccgca cgaataaagc
     7441 ctttctcaaa gtcagtgtga atcacggctg ctgcttttgg agcggttgca cctaccgaaa
     7501 ccgtccacgc acgcacttct tttacccctg cggtaaagta ggtttgtaag ttaagtaaac
     7561 ggtagcctgc acgaataaca cggtttaagc ccggctcttc aatgcctaaa tcttgtagaa
     7621 attccacttt ttcttcgtca tcaagctcgg caatttccga ttcaatcgct gcacacaccg
     7681 gtacaaccac cgccccttct ttttcggcaa tttcacgcac acggtcaaga taagggttat
     7741 tttcaaaacc gtcttcgttc acgttggcaa tatacattgt cggttttaaa gttaagaagt
     7801 tgtagccctt aatagcgtgc agttcatcct tatctaaatc taccgaacga atcataccgg
     7861 cattttcaag cacaggtagg attttttcca taatcgataa ttcaaatttt gcgtctttat
     7921 cgccaccttt cgcacgtttt tgtaaacgct gaatggcacg ctcgcaactg tctaaatcgg
     7981 caagtgccaa ttcggtattg atgatttcaa tatcatcagc tgggtcaatt ttccccgcaa
     8041 cgtgaacgat gtcatcattt tcaaaacaac gcacaacgtg gccaatcgca tcagtttcac
     8101 gaatattggc taagaattta ttacctaaac cttcgccttt gcttgcacct gccactaagc
     8161 cggcaatatc cacaaattcc attgtagttg gtaacactcg ctcaggtttc acaatttccg
     8221 ccaacgcatc taagcgaggg tcaggcattg gtaccacacc ggtatttggc tcaatcgtac
     8281 agaacggata gtttgctgcc tcaatacctg ctttagttaa tgcattgaaa agggtcgatt
     8341 taccgacatt tggtaaaccc acaataccac atttaaatcc cattttttgt tccttagaat
     8401 tcccctctcc ccttgcggga gagggataaa tttgagcttc gttcagaagc gaaaatgagg
     8461 gagagggcga aattgcaata atttcctcaa atatgaccgc tcccctctct ctgaaaaata
     8521 cttctgaacg aagtattttt cggtctctct cccacaaggg agagagtttt aatttgcttt
     8581 aaaactattt aaacggttag ttgccttaac cattccgtct ttaaataaaa cttctacgca
     8641 acgtgcggct tcatcaaccg cactattcag taatgtctga tcgcttggtg aaggcttgcc
     8701 cagcacataa ttcgccacta agtctttatg ccccgggtgt ccaataccaa ttcgcacacg
     8761 gtaaaactct ttattattgc caagggcggc aataatatct ttcaagccgt tatgaccacc
     8821 gtgtccgccg ccttttttca atttcaccga accgggtggt aaatccaatt catcgtgagc
     8881 gaccaaaatt tcttccggtt taatccgata aaaattggct aacgctccca ctgctttacc
     8941 acttaaattc ataaaagtag tcggcactaa taaacggact tcgccttgag cggtattaat
     9001 ttttgctact ttgccaaaat atttcggctc ttcttttagg ctaacgttat atattcgggc
     9061 aagttcgtta atcagccact cgcctgcatt atggcgggtt tcttcatatt ttacccccgg
     9121 gttcgccagc ccgacaatta atttaatttc tgacacaatc ttgtctcaat tcatttaatt
     9181 taaaaggcag tattttagag aaaaaccgct attttctcaa ggcaaccatt aatcatattg
     9241 tctatacgga tttggtacgc attgatactt cgctaacatc gattcagtga aatcggtgcg
     9301 tgaagcagcg ttatcattgt ttaaactaac cacaccaatt cgcttgcctc tgcaatcccc
     9361 tttagcaata aaggcaagat tataacccgc ctcacgggta taacctgtct tactcactaa
     9421 tgcctgatag gattgggaac gaaccatact gttggtgttt ttcatagaga aataacgacc
     9481 acctgcataa acactcacta atggcgaatt agacaattgc tgaatttcag gcttacttgc
     9541 cgcatagcct gccaatttag caagatcaac caccgttgaa acattatccg aagataagcc
     9601 tgagctatca ccaaagtagg tttgagtcat accgatttca cgggctttgc tgttcattcg
     9661 agccaaaaat tgggctttat tcaaatgtgt tgcgtgggca agggcgtgag cggcatagtt
     9721 atcggagcga actagcatcg cttttaacaa ttcactacag gcaatgttaa gatttttcgg
     9781 caatgggctg gtcgtgcctt ttaagaaatc agcatctgac ggcaaaattt gggtttggca
     9841 actcgcccca tagcggtttt cttctaagaa aacgactgct gtcattaatt ttgtgaccga
     9901 agcaatcggg cgaactaaat tgaaattctt accttccaaa aatttctttt ggtttaagtc
     9961 aaacaccaca taagcggaat tttcggttgg aatataagca gcggttgctt taatccgtgg
    10021 tgtgcttttc ctttttgccg gctgggagga acaggcgctt aacaccagag ccgcaatcat
    10081 aacaggaata aattttttca tcataataga ttcatcgata ataaagtcaa agctggttat
    10141 tctaccctgt ttccaaaatt gtgccaaagc aagcggtcga tttttacaaa atttttgcaa
    10201 atctagccga ttttgcaaaa tttccgccaa atttaaccgc ttgccctctc gcctcaaatc
    10261 agcgaaaata acgcttaatt ttttggcgga ctttccgccc tttttatttt aattggttga
    10321 gaaaaatgtc atacccacaa gaagttaata aacgtcgcac ctttgcgatt atttcccacc
    10381 ccgatgcggg taaaaccacc attaccgaaa aagtattgct ctacggaaat gcaatccaaa
    10441 ctgccggctc ggtaaaaggc aaaggctcgg cacaacacgc taaatccgac tggatggaga
    10501 tggaaaaaca acgtggaatt tcgattacca cctccgtgat gcagttcccg tacaatgatt
    10561 gcttggtaaa cttactcgat acaccggggc acgaagactt ctcggaagat acttatcgta
    10621 ctttgactgc ggtagatagc tgcttaatgg ttatcgactc ggcaaaaggg gttgaggaac
    10681 gcaccattaa attaatggaa gtgacccgct tgcgtgatac gccaatccta acctttatga
    10741 acaagctaga ccgtgatatt cgtgacccga tggagctgtt agatgaagtg gaaagcgtgc
    10801 tgaaaatcaa atgtgcgccg atcacttggc cgattggttg cggaaaattg tttaaagggg
    10861 tatatcacct ttacaaggac gaaacctact tataccaaac cggacaaggt cataccattc
    10921 aagaagtacg agtggttaaa ggcttaaata atccggaact ggatcaagcc gttggcgatg
    10981 atttagccca gcagttgcgt gatgaattag agctggtaca aggcgcttcg cacgaattcg
    11041 atcacaccga atttatcaaa ggcgagctga caccggtttt ctttggcact gcactgggta
    11101 acttcggggt caatcatttc cttgacggtt taaccgaatg ggcaccggca ccacaagccc
    11161 gtcaatcgga cgaacgtgaa gtttcaccaa gcgaggaaaa attcagcggt ttcgtattta
    11221 aaattcaagc gaatatggat ccgaaacacc gagatcgagt tgcttttatg cgtgtcgttt
    11281 caggtaaata tgaaaaagga atgaagctta aacacgtccg tatcggcaaa gatgtggtga
    11341 tctccgatgc cttaaccttt atggcgggcg accgttcaca agccgaagaa gcctacgccg
    11401 gcgatattat cggcttgcac aatcacggca cgatccaaat tggtgatact ttcacccaag
    11461 gcgaaaattt caaattcacc ggtattccga acttcgcccc tgagctgttc cgccgaatcc
    11521 gcctgcgtga tccgctcaaa cagaaacaac tgctcaaagg cttggtacaa ctttccgaag
    11581 agggtgcggt gcaagtattc cgtccgttaa tcaacaacga tttgatcgtg ggagcggttg
    11641 gggtgctaca gtttgatgtg gtggtttcac ggctgaaaac cgaatacggt gtagaggcaa
    11701 tttatgaaac cgtaaacgtt gccacagccc gttgggtcga aggcaaagat gccaaaaaat
    11761 ttgaagagtt caaacgcaaa aacgaggcaa accttgccct agacggcgga gacaacctca
    11821 cctacattgc tccgacaatg gtgaacttaa acctcgccca agaacgttac cctgacgtac
    11881 agttctttaa aacgagagag cactaaaacc aataggggcg aaaaatcttt cgcccctaca
    11941 aataaagcac aagcggtcaa ttttttttcc gaattttaca atactaggca ttctgttcct
    12001 caaatagcct aaatattccc ctatcaacaa tccttatctt gagattattc tgcctattaa
    12061 ttaaccactc aaaaataccc tcgcagaaaa ctctactttt tttatggaaa tatgctaaag
    12121 ttcgccaata ttcatagccc tgattttttt atggagaaaa taaaatgaaa aaatggttga
    12181 ttccattaac tgtcgcagcg ttctgtgttt ctgcttgcga tgataagaac agcactcaag
    12241 caaccgcaga aaaaccgcaa gtagagaata ctcaatcgca aaaaaatgcg gaaatattac
    12301 cgcttgcaac cgtggttgcc ccatgggaaa tcaatagcct tgacccgaat caatcaggcg
    12361 taattttcca gcgtatgaac ttagcggaaa cattggtcga agccgatctt aacgggaatt
    12421 taattccggc attggccact gactggcgca gtaacgaaga gggaacaatc tggcgtttta
    12481 ccttgcgtga aggggtaaaa ttccataacg atcaagtact taccgcacaa gcagtggtaa
    12541 atagtttgaa tatcgcaaaa agcaaaccgg gtgtgttagc aaaagccttt atcaaggaaa
    12601 ttcgagcggt agataacaaa gtggaaattg agctaactaa agcttttgtg ccgtttcctc
    12661 cctttttaac acactacacc gccttaattt tggcacctga aagctataat gaaaaaggcg
    12721 aagtgaccca aattatcggt acaggtgcgt ttaaacccac aaaaattgaa gctccgcaga
    12781 aattggaagc ggtgcaattt gagggctatt ggggcaaaaa accgcaagtt cagcaagcca
    12841 attatttagc cagcagccgt agcgaaaccc gtatgttaat ggcacaaagc gagccgtcat
    12901 cactggtatt taatttagat accgccagtg tagcaaggct gaaagccgat cctaacctgc
    12961 aattagtcag cggatctatt gcccgtacta ttcagttgaa aatggacgtg gcaaagccgt
    13021 tttttaacga cttagcgatt cgccaagcct tatcgcaagc gattaatcgc aaggcgattg
    13081 ctgagcaggt cttaaaaatt gagaacggag ctgccgatca aattttaccg aaagcctttg
    13141 ccgactggcg tgttgatacc gcagaacaag tggtcgatat tgcaaaaatt aaacaaaatc
    13201 tgaccgcttc cggctatacc tttgatgaac aaggtcgctt aaccaaagac ggcaaaccgt
    13261 ttagctttac catgcgcacc ttctcagatc gtcctgaatt accggtgatt gctactatct
    13321 tacaagctca atggaaacaa attggcgtgg aagtgaatgt ttcggtgggt aatttcagcg
    13381 aaattccggc ggggcatcaa gacggcagtt tagaaatggc tctttatgcc ttaaattatg
    13441 gcaaaacctt agatccatat ggcgtaattg cctccgactt cgccaatggt ggcagtgatt
    13501 ggggggtaat gaattggcaa aatactgagg tagacaatgc agtcaaatcg ctcgaaaccg
    13561 agcgtgaccc gcaaaaagcg aaagcattaa agcaaacggt tagcaaaatt atttacaatg
    13621 atttgccaat cattccggtg gtttattacc aacaaaatgt ggtggcacat aaagaagtaa
    13681 aaaatgtgac gctagatcca tttgaaagac gcttcttttt ggagttatta agtaagtagt
    13741 ttaattcaaa atactcctcg ctttagaaaa gggaaggtag gatttttcag tagtaatttg
    13801 cgctcttagg tgaataaata gtgacagaat tatcgttttt tctcattttt cacctatttt
    13861 ctccgcttat ttcttctgcc aaatcttccc ttcc
//
LOCUS       DANMGB010000055        13865 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.055, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000055 DANMGB010000000
VERSION     DANMGB010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13865
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.055"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(136..852)
                     /gene="rph"
                     /locus_tag="PXG19_001221"
     CDS             complement(136..852)
                     /gene="rph"
                     /locus_tag="PXG19_001221"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL6066525.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1133..1996
                     /locus_tag="PXG19_001222"
     CDS             1133..1996
                     /locus_tag="PXG19_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL6066526.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            2005..2895
                     /locus_tag="PXG19_001223"
     CDS             2005..2895
                     /locus_tag="PXG19_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL6066527.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2927..3187)
                     /locus_tag="PXG19_001224"
     CDS             complement(2927..3187)
                     /locus_tag="PXG19_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL6066528.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3417..3836
                     /gene="rbsD"
                     /locus_tag="PXG19_001225"
     CDS             3417..3836
                     /gene="rbsD"
                     /locus_tag="PXG19_001225"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL6066529.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3846..5342
                     /gene="rbsA"
                     /locus_tag="PXG19_001226"
     CDS             3846..5342
                     /gene="rbsA"
                     /locus_tag="PXG19_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL6066530.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5352..6320
                     /gene="rbsC"
                     /locus_tag="PXG19_001227"
     CDS             5352..6320
                     /gene="rbsC"
                     /locus_tag="PXG19_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL6066531.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6343..7221
                     /gene="rbsB"
                     /locus_tag="PXG19_001228"
     CDS             6343..7221
                     /gene="rbsB"
                     /locus_tag="PXG19_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL6066532.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7342..8271
                     /gene="rbsK"
                     /locus_tag="PXG19_001229"
     CDS             7342..8271
                     /gene="rbsK"
                     /locus_tag="PXG19_001229"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL6066533.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8285..9295
                     /locus_tag="PXG19_001230"
     CDS             8285..9295
                     /locus_tag="PXG19_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6066534.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9331..9960)
                     /locus_tag="PXG19_001231"
     CDS             complement(9331..9960)
                     /locus_tag="PXG19_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6066535.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10158..12317
                     /gene="rlmKL"
                     /locus_tag="PXG19_001232"
     CDS             10158..12317
                     /gene="rlmKL"
                     /locus_tag="PXG19_001232"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL6066536.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12494..12973
                     /gene="trmL"
                     /locus_tag="PXG19_001233"
     CDS             12494..12973
                     /gene="trmL"
                     /locus_tag="PXG19_001233"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL6066537.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13067..>13865)
                     /locus_tag="PXG19_001234"
     CDS             complement(13067..>13865)
                     /locus_tag="PXG19_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL6066538.1"
                     /translation="EQKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYWRKLKQRL
                     KAEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQWLAKVGY
                     ERLQEINDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSGVEQPQDF
                     AFLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQIAESMQA
                     VGVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
BASE COUNT         4007 a         2712 c         3217 g         3929 t
ORIGIN      
        1 aaaaaataat tgttatttta tgattgagtg tattttgaaa agggaaataa aaaaatctac
       61 atctgaatca gaacggttat tctgttttgt cagatgtaga ttttatttaa aaagaaaatc
      121 aaaaagagaa gtgaattatt cagctaacgc tttacgttga gcttcaacta gctggctaat
      181 gccttgcttc gctaaatcta gcaatgtcag taattcttgg tgcgagaacg gttcgccttc
      241 tgccgtgcct tgtacttcca ctaaacgacc atcttcgacc atcaccacgt tcatatcagt
      301 ttcagcgttg gaatcttcca gatattctaa atcgcacacc gcttcgcctg ctacaatacc
      361 gacagaaatt gctgcgacta aacctttcat tgggttagtt tttagtgttc cattagctac
      421 taacttattc attgcatcgt acaatgctac gcacgcaccg gtaattgagg cggtgcgagt
      481 gcctccatcg gcttgaataa catcacaatc tacggtaacg gtacgttcgc ctaaggcttt
      541 taaatctacc accgcacgca gagaacgggc aatcaagcgt tggatttcca ttgtgcgtcc
      601 gccttgtttg ccttttgccg cttcacgctg agtgcgagag tgggtggctc gtggcaacat
      661 accatattct gcggtaaccc aaccttgttg ctgacctttt aaaaagcgtg gcacgctttc
      721 ttctaccgta gcgttacaca atactttggt ttcgccaaac tcaattaata ccgagccttc
      781 ggcatagcga gtgtagttac gggtaatttt aatttctcta acttggttgt ttgctcgatt
      841 atttggacgc attttctttt ccttttgcta aaatttttac cattttagca aagaacacag
      901 taaaatgtga tttttcttta gcaaagaatt tacatagccc tcgccccttg tgggagaggg
      961 acggattttt cttcgttcag aagaaaaatc agggagaggg gtaagcggtt atttttatct
     1021 caaattttac aaattcctcc ctctctctga aaaatatttc tgaacgaaat atttttcggt
     1081 ctctctccct caaggggaga gagctttact tataaaaaca caaggaatac caatgattta
     1141 tagtatgaca gcatttgccc atttagaaat gaaaaaagag tggggcaatg cggtgtggga
     1201 aattcgctcg gtaaatcaac gctttttaga aacctatttt cgtttgccgg agcagtttcg
     1261 caacctagaa atgaccttgc gtgagcgttt acgttctgca ctgacacgag gcaaagtaga
     1321 gtgtagctta cgcattgatt taagcaaaac ccaaaacagt gaaattgcgt taaacaaaga
     1381 atatgccgca caggtggttc aatcattaaa atggttaaaa gaaaccgcaa atgaaggcga
     1441 aatcaacctt gttgatgtgc tacgtttccc gggcgtggtg gataatgaaa gccaagattt
     1501 agaccaaatt gctcaagatt tattagccgg ctttgaacaa attctggcag attttatcgc
     1561 aatgcgagcc agagagggcg agaacgtgca agccctgatc ttacaacgtt tagaagcaat
     1621 ttcagttgag gctgcaaagg tacaagccca aatgccggaa attctgcaat ggcagaaaga
     1681 tcgtttacaa caacggttcg atgaactgaa tttacagctt gatccacaac gcttagaaca
     1741 agaaatggtg ttacttgccc aacgtgttga tgtggcggag gaattagacc gcttgcaatt
     1801 acacgttaaa gaaaccacca atatcctgaa aaaaggcggt gcggttgggc gtaaactgga
     1861 ttttatgatg caagaactaa accgtgaatc caacacgctc gcctcaaaat cgattaatgc
     1921 ggacgtgacc aattcggcgg tggagctgaa agtgttgatc gaacagatgc gtgaacaaat
     1981 tcagaattta gaataggaca gattatggca atgaatttca agcaagtgag ccagagctat
     2041 ccaaatctct gcgtgccgct ttctcagtat tgtttaattg aaatcgcagg ggtagatgct
     2101 gagaaatatc ttcaagggca attaacctgc gatgtggcaa aaatttcggt gggcgaacat
     2161 acgctaacca gccattgtga tccgaaaggc aaaatgagtg cgttactgcg tttgtatcgt
     2221 gcagaaaatg agaaatttat ggcgatcatt caccgcagct tattgcctga agccctgacg
     2281 caacttaaaa aatatgcggt tttttcaaaa gtgaccttca cggaattaga caccccactt
     2341 tatggtatgg caggtgaagc agcatttgca aaattaagcg aaaatatgac cgctttgcgt
     2401 ttaaccacag gacagcctcg ggccattgtt tggggcgaag agcttgaaac gactgccgat
     2461 gaacagctct ggacattaat ggatattcaa gacggcattc ctgttctctt gcaacaaaac
     2521 cagtttgagc tgattccaca ggcaaccaat ttacaggcac ttgaatctgc gatttcattc
     2581 accaaaggtt gctacatcgg gcaagaaacg gtagcgagag cgaaatatcg tggggcgaat
     2641 aaacgtgctt tatttaccct tgccggcaac tttgaaagcg aaatcagctt accggaagtt
     2701 gcttctgcga ttgaaatgca actgggcgaa aattggcgag caaccggcac tgtgttgacc
     2761 agtgcgactg atgaaaatac cctgtgggtg caagtggtgc tgaataaaga tgttgaacct
     2821 aacaccaagt ttagagccaa tggtgtagcg ttggaaatgg tcgagttacc ttatagtttg
     2881 gcagaaaatg agtaaaacga acggtcatca gggtatgacc gtttttttat atctgatcag
     2941 ggtgatgaat catcacaaaa cgttcccaca actgctcttc ggtttcgata ttatcaggat
     3001 ctttgataat gcagttggta atcgggcaaa ctttctggca agtcggcttt tcataatgcc
     3061 cgacacattc ggtacataac accggatcga tgatataaat atcatcgccc accgaaatcg
     3121 cctcgttcgg gcattccggc aagcacatat cacagttggt acatttgtgg gtaattaata
     3181 aagccatagt ttatattgag aaaataaaaa ttaaacaagc ggtcgatttt gcaaaaaaat
     3241 ttgcaaatct taccgcttgt cactaaatgc tacctattat aaagcaaaat aatttgaact
     3301 acttcacatt tttgcaattt ggttgtttat ccgattaaga aaatttttta tgatgccatc
     3361 gaaacgtttc gatggagtat tttccaacgt gatggagcga aaataaaggg gttagtatga
     3421 aaaaaacgct aaatctaaat gcacaacttt cgcacagtat tgcgacactc gggcataccg
     3481 atagtttaac ggtttgcgat gccggtttgc cgattccaaa cacaatagag cggatcgatt
     3541 tggctttaac cgccggtgtg ccaagttttt tacaaacatt tgatgtagta gttagtgaat
     3601 tatttgttga acgagtgcta cttgctgaag aaattaaaca taaaaatccg caagtgttag
     3661 cagctctttt ggagcgttta acccaattag aacaaactca acagaataaa attcaaattg
     3721 attatgtgaa ccacgaaatc tttaaagagc agacacatta cagtaaagct gttgtgcgtt
     3781 cgggtgagtg ttcaccgtat gccaatatta ttttatattc gggcgtgccg ttttagggtg
     3841 gaatgatgga aaccttatta aaaatgagcg ggatagataa agaatttccc ggcgtgaaag
     3901 ccttgagcaa tgcgtgctta tctgtttacg gtgggcgagt aatggcatta atgggcgaaa
     3961 atggggcagg taaatccacc ttgatgaaag tattgacggg gatttatagc aaagatgccg
     4021 gctctattag ctatttaggc aaagaagtta cctttaaagg cccgaaagat tcacaagaag
     4081 ccggtattag cattattcac caagagctga atttagtcgg taatttaacc attgctgaaa
     4141 atattttttt gggccgtgag tccaaaaccg cttggggagc tattgattgg aaaaaaatgt
     4201 atgccgaggc ggataaactg cttgcccgac ttggggtaaa acacagtagc catcagcttt
     4261 gtgcggagtt atccattggc gagcagcaaa tggtggaaat tgcgaaagcc ctgagttttg
     4321 agtctcaagt aattattatg gacgaaccga ccgatgcttt aaccgataca gaaacagcat
     4381 cgttgtttaa agttattcga gagttaaaag cggaaaatcg aggcattgtt tatatttccc
     4441 atcgtttaaa agagattttt gaaatttgtg atgatgtgac ggtgctaaga gacgggcaat
     4501 ttatcggcga gcgagtaatt gccgatattg atgaagatca gttaattgaa atgatggttg
     4561 gtcgccgttt ggaagagcaa tatccgcatt tacaccaaga gcgtggcgag ttattacttg
     4621 aagtgaagaa tttaagtgga agtggggtga ataatgtgtc attccaatta cacaaaggtg
     4681 aaattgtggg tatttccggc ttaatggggg cagggcgtac agaattaatg aaggtgcttt
     4741 atggtgcatt gccgaaaaca gccggctcga tagagttaaa tggaaaagcg atttccaacc
     4801 attgtccgca agatgggttg aataacggca ttgtgtatat ttcagaagat cgtaaaggcg
     4861 atggtctgat tttgggaatg tcggtaaaag aaaatatgtc tttgacctct ctcgatcatt
     4921 tctccaaagc cggcagtatt cgccacgatg cagaaaaatt ggcggtcgat gattttattg
     4981 agatgtttaa cattaaaacc ccaagtcggg agcaacaaat cgggctgctt tccggtggta
     5041 atcagcaaaa agtggcgatc gctaaagggt tgatgacccg cccgaatgtg ctgattttag
     5101 acgagccgac acggggtgtt gatgtggggg cgaaaaaaga gatctatcaa ttaattaatg
     5161 aatttaaaaa agatgggctt agtattttga tggtttcgtc cgatatgccg gaagtgttgg
     5221 gaatgagcga ccgcatttta gtgatgcacg aagggcaaat cagtgcagaa ttttcacgag
     5281 cagaagcgac acaagaaaag ctactggcag cagctattgg caaaagtaca ggattaaatt
     5341 aaggtgtgtt tatggcaact caaacaaagc agtttcaact tggcagattt ttaatcgagc
     5401 aacgttcttt tgtagcgtta tttattttaa ttgtcagtgt ttcaatgatt aaccctgatt
     5461 ttttcagcgt ggataatatt ttaaatattc tacgccaaac ctcggtgaat gcgattattg
     5521 cggtcggaat gacctttgtg attttaattg caggcattga tttatcggtc ggttcggttt
     5581 tagccttaac cggtgcggtt gcagcgacct tagtcggttc tgaattgccg attttgttgg
     5641 tgattccgct ggttttatta ttagggacgg catttggtgg tattagtggg gcgattgttg
     5701 ctaaaggtaa agtgcaggca tttattgcga ctttggtcac aatgacctta ttgcgtggga
     5761 ttacgatggt ttataccgat ggcagaccga ttagcaccgg cttttctgac caagcagacg
     5821 cctttgcgtt tattgggaca ggctatttat ttggtattcc tgtgccgatt tggattatgg
     5881 cggtagtgtt tgggttagct tggtatattt tgaaacacac cccgattggg cgttacattt
     5941 acgctttagg tggcaacgaa tcggcaaccc agctttcagg catcaatgtg aataaaatta
     6001 agatcttcgt atttgccgtg agtggttttt tatctgctct tgccggctta attgtgactt
     6061 cacgtctctc ttctgctcag ccaacggcag gtgtgtccta tgagttagac gcaattgcag
     6121 cggtagttgt tggtggaacc agtctaatgg gcggtaaagg gcgtgtaatg ggaacgcttg
     6181 tcggggcatt aattatcggt ttcttaaaca atgcccttaa tttattggat atttcttcat
     6241 attatcagat gattgctaaa gcgttggtta ttttagcagc tgtattagct gataattatc
     6301 taggcactaa aaaagtttaa tctatcttta aaggagattt ctatgaaaaa attaactacg
     6361 attgcatcag cggttatgtt aagtttatcg gttgcagcca ctgcttcggc aaaagagact
     6421 atcgctcttg cagtatcgac tttagataac ccattctttg tgagccttaa agacggtgca
     6481 cagaaaaaag cagatgaatt aggctacaaa ttagtggtgc ttgattccca aaatgacccg
     6541 gctaaagagc tttccaatgt ggaagactta acggtgcgtg gggcaaaagt gttattgatt
     6601 aacccaaccg attcggaagc ggtcggaaat gcggtggcta ttgcaaatcg caacaaaatt
     6661 ccggttatta cacttgaccg tggtgcagca aaaggcgaag tggttagcca tatcgcttcc
     6721 gataacgttg ccggcggcaa aatggcggga gatttcattg ctcagaaatt aggctcaggg
     6781 gcgaaagtga ttcaattaga aggcattgcc ggcacttccg ccgctcgtga acgtggtgaa
     6841 ggctttaaac aagcgattga agcacataaa ttcaatgtat tagccagtca accggctgat
     6901 tttgaccgca ctaaaggctt aaatgtgact gaaaacttgc tctcaagcaa aggggacgta
     6961 caagctattt ttgctcaaaa tgatgaaatg gcactaggag ctttgcgtgc agtgagttca
     7021 gcgaagaaag aggttgtaat tgtgggcttt gacggcacag atgatggcgt aaaagccgtt
     7081 gaaagcggta aacttgccgc aacgattgct caacaacctg aactgattgg ctcattaggc
     7141 gtagaaactg ccgataaagt gctaaaaggc gaaaaagtgg aagcaaaaat tccggttgat
     7201 ttaaaggtta tttcaaaata attatacttg aagatagcgt tcgtctctga cgaacgcttt
     7261 gaattaataa aatagcactc gtcagagact agtgctatca gaatcctagt tttgttgtac
     7321 taggtaattt gagggcttaa tatgaaaaaa ctcaccgttc tcggtagcat taacgctgat
     7381 cacgtgattt ccgttcccta ttttgccaaa ccgggggaaa cgctcaccgg acatagctgc
     7441 cacattgctt atggcggtaa aggggcaaat caggcggtgg cggcagcacg tttgggagct
     7501 aaggtttctt tcatcggttg tattggcagt gatgacatcg gcaaagcaat gaaatcagcc
     7561 tttgagcaag atggcattga cactcgctcg attaaaacga ttccgaatga aatgaccggc
     7621 attgcaatga ttcaagtggc ggaatcgggc gagaacagta ttgtgatttc agccggagcg
     7681 aacggtcatt tggatgaaac ggttgtggca aagtgtgcag ccgaaatcac acaggcggat
     7741 tatttgctaa tgcagctaga aacaccgttg ccggcgattg tgcaagcagc aaaattggct
     7801 cagcaaaacg gcacgaaagt aatattaaac cctgcgcctg ctcgagcgtt acccgatgaa
     7861 ctgttaaact tactggatat gattacccca aatgaaacgg aagcggaaat attaaccggt
     7921 gtgaaagttg ttgatgaagc cagtgcgatt caagccgcac aagtgtttca ccaaaagggc
     7981 atcgaaaaag tgttgattac acttggctca aaaggggtat ttgtaagcga aaacggtgta
     8041 ggcaaaatcg ttgcaggctt ccgtgttcaa gcggtggata ccactgccgc aggggatact
     8101 tttaacggag cattagtgac tgcaatgtta gaagataaac cgctggatca agccattcgt
     8161 tttgctcacg cagcggcagc gattagtgtg actcgcaaag gggctcaacc ttctattccg
     8221 acccgtcagg aaacactgga ttttctaagc caacaagcgg tgagttttta ggaaaatttt
     8281 gcaaatggca acaatgaagg atattgcacg gcttgcacag gtttccacct cgaccgtttc
     8341 tcacgttatc aacaatagcc gatttgtcag cgaggaaatt cgggaaagag tgcagagggt
     8401 ggtgaaagaa ctgaattaca cgccttctgc attggctcgt agcctcaaag tgaatgaaac
     8461 taaaaccatc ggaatgctgg taacggcaac cggcaatccg ttttttgcgg aggtgatggc
     8521 gggggtggag caatattgcc agcaacatca atataacctg attattgcca ctaccaacgg
     8581 tgacaccgag cgtttgcaac accatttgca aatgctgatg caacgaaaag tagatggctt
     8641 gttactgatg tgtggcgata ccagattgaa tgccgatgag agcttgaata ttccgctgcc
     8701 attggtggtg ttagactggt ggtttaccga gctcaatgca gataaaatct ttgaaaattc
     8761 aatatccggc ggctatctcg caacaaaaac cttaattgaa gcagggcatt ctaagattgc
     8821 gattattact ggaaacctaa aaaaatcatt ggcaaaaaat cgtttagaag gctacaaaaa
     8881 agcacttgcc gaggcgaata ttccactcaa tccaaactgg gtgttcgaaa gccattttga
     8941 ttttgccggc ggggttaatg gaatgaatgc tttgcttgcc caaagcgaaa agccgacagc
     9001 ggtatttgcc tgtagcgaca ccattgctct aggggcttac caagcaatct ggcaacaagg
     9061 tttacgaata ccgcaagata tttcgattat cggctatgac gatattgaac tggcaaaata
     9121 cctttcccca ccgctgagta ccattagcca gcccaaagcg gaactcgggc ggcttgcggt
     9181 ggaaactttg ctaaaacgaa ttcgttttaa atccactgat tttcaaacca taatgcttga
     9241 acctgaatta gttttaaggc attcaatcca aacaataaac aaaaacgctg aataatgtga
     9301 agttattcag cgttttttat ccgatttcaa ttagcctttt tgctgttcca aataaagcac
     9361 ggtggcggca actcgggaat gcacgtttaa tttacgcagt aaattgcgga tatgcacttt
     9421 tacggtttct tcggaaataa agagctgagc cgcaatttgt ttgttcgaca taccggttgc
     9481 gagccattgt aaaacatcca gttcacgatc tgttaagcaa cttaaaggat cattttctgg
     9541 ctggcggttg agtaaatgtt ggcgaacggt ttcgcttaat accacttcac cggcagccgc
     9601 tttacggata ttatctagta gttccggggt gtcggtatct tttaataaat agccgtccac
     9661 accagcatcc attaatgcaa atacatcgga ttgctcgtct gacactgtta aaacaatgat
     9721 tctggcatct ataccttgag cgcgcaatga gcgtaaagta tctagccctg aaagcccttt
     9781 catatttaaa tccagaataa tcacatccgg ctcaagtcgt aatgcaagtt tgataccgtc
     9841 ggtgccgttg cttgcttcac ccactacact aaattggtga tctaattcca atagttgacg
     9901 cattccctga cgcattaatg ggtggtcgtc aatgagtaaa atttgagttg gagctgtcat
     9961 ttatttctcc tttcctttct cttaatcggt taattttgca attattaatt caaaatagca
    10021 agtttaggga tttactaaat gccgcttttt tgatcttagc taatttttaa ctaaaaaaga
    10081 aattgcaaaa ctttgcaaga aaaagaccgc ttgttcggct ataattactg ccaattttta
    10141 tttcaagtgt gaaaagaatg acaaatcaaa caacctattt tgccacggca gcccgtggtt
    10201 ttgaggaaat actaaaaacc gaactggagc agatttgtgc ggcagaatgc aaagtcgctc
    10261 aaggcggtgt gcattttacc accacgcaaa aaggggctta tcaggcatta ttacacagcc
    10321 gtttagcctc tcggatctta ctgccgctca tcagcaccaa aatttttagt gatagcgatt
    10381 tatatgcttc catcgtgtca tttaactggg cggatttatt cgatccccgt gatacctttt
    10441 acattgattt cagcggcact aaccgagaaa tccgcaacac ccaatttggg gcaatgcgag
    10501 tgaaagacgg cattgtggat tactttgaac gcaaaggttt tgcccgccca acagtagata
    10561 aagataatcc ggatgttcgc attcatgttt atttggatcg tgaaaatgtt gtggtttcgc
    10621 ttgatttaag tggagatgcc ttacatattc ggggctatcg ggaagaaacc ggtaaagctc
    10681 cgttgcgtga aacattggcg gcagccatta ttttgcgttc cggctggaaa gtcggcacgc
    10741 cattggttga tccgatgtgt ggttcaggca cgttactgat tgaagcagca caaatggcag
    10801 cgaatattgc ccctcaactt caccgtaaac attggggctt taatgcgtgg aaagggcatc
    10861 aacaagcgat gtggaaagcc gtgttagatg aggcattccg aaatgttgaa ttgggtgcgg
    10921 taggggagaa ttgcaattcg tccctacaaa aaatgttctt cggttttgat ctcgatcatc
    10981 gtgtgctgac taaagcaaag caaaatgcga aaaatgcagg ggtagatcat ctcattcaat
    11041 ggcaacaagg tgatgtggct gcgttaaaaa atccgattcc ggaaaaaatc ggcacggtgg
    11101 tgtgtaaccc cccttatggt gaacgtttag gcacaacgcc ggcgttaatt gctctttatt
    11161 cggtgttcgg gcaacgccta aaacagcaat ttgccggttg gaatgcctca atttttagcg
    11221 gcgagcctga attgttaaat tgcctgcgtt tacgttcagc ccgtcaattc aaagcgaaaa
    11281 acggtccgtt ggattgtgtg cagaaaaatt actccatcag cgagcataac aagcggtcag
    11341 atttagatga aaatttacaa tttgaacaga atgctcaagt cgctccggat tttgcaaatc
    11401 gcttaaccaa aaatatcaaa aagatcgaaa aatgggcgaa acaacaaggc attgatgcct
    11461 accgtttata cgatgccgat ctgcctgaat ataatttagc ggtggacaga tatggcgacc
    11521 acattgttgt gcaggaatac caagccccga aaaatattga tgagcaaaaa gcccgccaac
    11581 gcttgttaga tgcagtctct gctacgcttt atgtgacagg tgttgaaact aataaattag
    11641 tgttgaaagt tcgccaaaaa caaaaaggca cgaatcagta cgaaaaactt gccaataaag
    11701 gcgagtattt ctatgtgaac gagtatgggg cgaaactgtg ggtgaattta accgattact
    11761 tggatacggg tttgttccta gaccatcgct taacccgtaa aatggtgggc gaaatggcaa
    11821 aaggcaaaac attcctgaat ctgtttgcct acacgggttc agctacggtt cacgctgctc
    11881 ttaatggggc aaaatcgacc actacagtgg atatgtcgaa cacctatttg aactgggcgg
    11941 agcaaaattt agagctgaat aatttatcac ttcgccatca tcgtttgttc caagccgatt
    12001 gcttgcaatg gctggcagaa tgccgtgagc gatttgagct gatttttgtc gatccgccga
    12061 ctttctccaa ctcaaaacga atggaaaaca gttgggacgt gcaacgagac catattgagt
    12121 taatgaaaca gcttaaacgt attttaaccg ctgatggtac cattgtgttc tcgaacaata
    12181 agcgtggctt taaaatggat tttgacggtt tggcagcatt aggcttaacg gcggaaaata
    12241 tttcgcataa aaccttaccg ttggattttg aacgcaatcc gcaaatccat aattgttgga
    12301 ttgtgaagaa tgtatagata ataccctcga cccttgtggg agagggatag atttttcttc
    12361 gttcagaaga aaaatcaggg agagggtaag aagttactga tgaaagagtt atttccccct
    12421 ctctctgaaa aatatttctg aacgaaatat ttttcggtct ctctcccaca aggggagaga
    12481 gtaaggctaa aaaatgttag atattgtttt atacgaacct gaaattccgc aaaacagcgg
    12541 aaatattatc cgcctttgtg ccaactgtgg ctttcgtttg catatgattg aaccgttcgg
    12601 ctttggttgg gacgataaaa agctccgccg ttcggggctg gattatcacg aatttgtgga
    12661 tattcaaaaa tataaaaatt ttgaagattt ccttgagcgt gctaagccta aacgcttgtt
    12721 cgccttaacc accagagggg agcagaacca cagtgatgtg aaatatgaac ttggcgattt
    12781 tttaatgttc gggccggaaa gcagaggcat tccaaagcca ttattagcgg aaatgccgat
    12841 gtcgcaaaaa atccgcattc cgatgtgcaa agacagccgc agtatgaatt tatctaactc
    12901 ggtggcggtg gttgtgtatg aggcgtggcg acaattcggc taccaaaatg cggtagcggc
    12961 acaatctatt taacttgcaa gcggtgtgat tttggctatt ttttgcaagt ttgtggtcaa
    13021 ggttggggga ggctcgacct tgactaatta agaacatcta ttgtgtctat tcttcttcat
    13081 ttttagctgg aggtaaaaaa ttctctccgg taacaactga tttacctgtt ttattctcca
    13141 attcctgacg ggcatttttg gcaatattgc caccttgttt tcctgcttgg gcattttcat
    13201 caaccccaac tgcctgcata ctttctgcaa tttgccgact ggaaagttca gcaagtgctg
    13261 taaataacaa ttcagcttcg ctcatatgat ctcgcagatt ttggcttttt aaacctttaa
    13321 gcgatttatg cttttgtaca gatagtccgc tccattcttg atgaatcaca ttggttaaaa
    13381 atgcaaaatc ttgtggctgt tcaacccctg acgatttcca ataatcggtc agtttatttc
    13441 gggtttcttg tcccatcatt ctttgctgaa tccatttttc acttcgtccc atcttctgcc
    13501 aattctccct tgctcgatct agactttgac ttggatcgtt tatttcctgt aagcgttcat
    13561 aacctacttt tgctaaccat tgtttgaagg gctctgcttt cggactaggg atagattgaa
    13621 taagtcggaa aagttgttcg gtatctgcta catcagtcaa acgcattttt ccgtcagcag
    13681 agggcatttt caacccgtga caatttgtca cggtttcatt gccttctgcc tttagcctct
    13741 gttttagctt acgccaataa gcagagggat ctaggctttc ggttaaaata gcaatcacat
    13801 caataataga aaaataccat ttatcttttt cttcatcgta atgactgcgt acagatttct
    13861 gttca
//
LOCUS       DANMGB010000056        13738 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.056, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000056 DANMGB010000000
VERSION     DANMGB010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13738
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.056"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            20..199
                     /locus_tag="PXG19_001235"
     CDS             20..199
                     /locus_tag="PXG19_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066539.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            192..479
                     /locus_tag="PXG19_001236"
     CDS             192..479
                     /locus_tag="PXG19_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6066540.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(605..2707)
                     /locus_tag="PXG19_001237"
     CDS             complement(605..2707)
                     /locus_tag="PXG19_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6066541.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
     gene            2990..3736
                     /locus_tag="PXG19_001238"
     CDS             2990..3736
                     /locus_tag="PXG19_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6066542.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            3932..5695
                     /gene="fucI"
                     /locus_tag="PXG19_001239"
     CDS             3932..5695
                     /gene="fucI"
                     /locus_tag="PXG19_001239"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL6066543.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            5889..7322
                     /gene="fucK"
                     /locus_tag="PXG19_001240"
     CDS             5889..7322
                     /gene="fucK"
                     /locus_tag="PXG19_001240"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL6066544.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAVKPNVKRVEPSSNSQFYK"
     gene            7397..7828
                     /gene="fucU"
                     /locus_tag="PXG19_001241"
     CDS             7397..7828
                     /gene="fucU"
                     /locus_tag="PXG19_001241"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL6066545.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            7888..8541
                     /locus_tag="PXG19_001242"
     CDS             7888..8541
                     /locus_tag="PXG19_001242"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL6066546.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            8603..10132
                     /locus_tag="PXG19_001243"
     CDS             8603..10132
                     /locus_tag="PXG19_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6066547.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            10129..11127
                     /locus_tag="PXG19_001244"
     CDS             10129..11127
                     /locus_tag="PXG19_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066548.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            11151..12098
                     /locus_tag="PXG19_001245"
     CDS             11151..12098
                     /locus_tag="PXG19_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066549.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            12154..12405
                     /locus_tag="PXG19_001246"
     CDS             12154..12405
                     /locus_tag="PXG19_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL6066550.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            12534..13685
                     /gene="fucO"
                     /locus_tag="PXG19_001247"
     CDS             12534..13685
                     /gene="fucO"
                     /locus_tag="PXG19_001247"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL6066551.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
BASE COUNT         4107 a         2829 c         3005 g         3797 t
ORIGIN      
        1 atcttaatag gagcagatta tgtttaaaga gaaaggctat gatgaattcc tagcagaaaa
       61 aattcgcctt ggcttagaag atatgcaatc aggtaatggt ctttcactcg atgaatcaaa
      121 agcacgaacc aaacaactga ttgaacgtaa agcaagagaa ctcgcaaact ttgaacaaga
      181 gaatatcatt tatggctaaa acattacgaa ttagcagtag agctcaaaat gatattgaag
      241 aaattttagc gagcgtaatt gaatatactg gttttgaaag tagtggaatt cgcttacaag
      301 aagatattta ccaaaaattt gagactatcg cttatatgcc ctctgcggct ggacgtttaa
      361 gagaagatgg cacaagagaa gcattcacta ggcgttatcg tattgtttat accgaattag
      421 aaaatgaagt gtggattatt accattattc atagtagcag actttatcca cgcatttaaa
      481 taacaaacga ctaaaatagt cggtttttta tttgcaaaaa attaataaaa tatcaccgct
      541 tgtaagctcc ataaaaaaaa gcccgattgt aacatcgggc gttttagtct gaatttaagt
      601 cagattagaa tgtgtagttc acacctgcac ggaattcacg tccacgagct gataattgac
      661 cacgctgacc gtgtgcgttg tattttttat tcgccacgtt atccactgcg aagtttacat
      721 tcacgctatc atctttaagt ggtttccagt ttaaggtgat atcagttaca ttgtagccgt
      781 ctttgcctgt accggtattt gtttgtaatg ttccgcccgt aacgaagaaa ttatcttcag
      841 gtttcacttt ctcaacaata cggtggtgta cgccaacctc taaatttggt tgttcaaagc
      901 gatagcttaa agaagctgtc caagtacgac cgatagctga ggcgtattct gggttagtac
      961 ttaataatgg tttttcttcc cgcttaccag tttgtctgtt tacttcccaa atagttggtg
     1021 agtagaaacg cggtttgctg tgtgcaacac caatacgagc agtaaaacca ccattatggt
     1081 aacctgcatt taactcataa ccacggtttt taattttacc taggttcata attaactcat
     1141 tattaggatt atggctatca cgaccaccac ctaatgcatc ttttatatct tgccagaaat
     1201 agctaccatc aaaactgaat gtaccattgt tatagttgaa accgatttca gtattacgag
     1261 ctttctccgc tttagtattg ctaccaatac taacgatttt tctatttccg tgagccgtta
     1321 gtgcatcgta taaacgaggg ctacgagttg catagttgtg gcttgcactt aagcttaaat
     1381 gttcaattgg ctcatagata agcccaacgc ttgggctgaa tgcaccatta ctacgctctt
     1441 taccatccat tgctttgaat ttgaagtggt cgtaacgtac accggtagtt aaagttactt
     1501 tatctactgg agcagtaatt gcttcaacat acacgccggt atcggttttc tcttggtttt
     1561 tcacaagagg gttaaattta gtgtgtggtt tagcttcttg gtggcgatag ttcacaccgt
     1621 attttaataa tacattttcg tgaagggcag aatcaaagtt tacgtttgca ccgtgggtta
     1681 ctattttagt tttggttgca taatctacac caccagcata accattacct gtttcattct
     1741 cagaccaacg accttgtact aactgataca cgttagctgt tgcttcttga gcaaaaccta
     1801 agtttttacc agtccattct aagttagttc tttgaaccgt aattctacgg ttagctggag
     1861 cttggcgttc tacagttaag cggttgtacg gagaaacctt tgtgccgtta ggtgctacat
     1921 caaattcttc acgcactaaa cgctgacctt catttcgctc acttgaatgg cttaatacaa
     1981 aacggtgatc tcccaatgtt gcacctaatt tagctaaaaa gctggtttta tctagtgcac
     2041 tatacggaac acggtttgtg ccgaattggt ttacgtaatc tttaccgcct ttatagtcgc
     2101 gatctctcac aagattacct gagactaaag catcaaagat ttcgccttta ccatataagg
     2161 ttgcattgaa attgtgagcg tggtttgtgc tgaagccagt acctaatttt gcaccgaagt
     2221 ttttatcgct gttttttaat aaatctaatg catcaacggt tttagcaatt actgcaccat
     2281 tagtttgacc aataccggct gaagcactgc ctgcaccttt ttgtacagaa acaattttca
     2341 ccaatgccgg atctaacata tgacgacctt ggtgatacaa aatttggcta tctgagtaag
     2401 tgttatctac ttttacatca attgagtttt gacccatacc acgaatatag agatattgtg
     2461 atgtaccgtt accaccacct aagctaattg ccggctcatc ttttaataaa ccacgcaaat
     2521 cggtttgggt gctttcatct tttttcttag ttgttaccac attgctttgt acttttaaac
     2581 cttgattatc tgttacggta acagtatcta atactactgc atctgttgaa gcagtttgag
     2641 ccactgcatt agcagcaagt acgctcaata ccgcagcaga aacagggagc aatttgaagc
     2701 ttttcatttt atttatattc cttaggtaaa ttatttaaga ggattatctg tttgatatta
     2761 aaaataattc tcaacaccaa acgttcgcaa attttacaga gataaaaatg attgtcaatt
     2821 agtctgaaat gaaatttcac aaaatatatt acaaatttta caaaaagttc cctaaattta
     2881 accgcttgca acacaaaatg tgatcgcctt ctaaaaatca aatttgcttg ctcgacagta
     2941 acgctacaag cggttaaatt tggagaaaaa tttacaaaaa ggatagatta tgcagctgcg
     3001 acacaaacag ataatggaat atatacaaca gtttgatgaa gctaacgttc aagaattggc
     3061 ggaacattgt ggggtttcga ttgaaactat ccgccgagat ttaaataagc tagataaaga
     3121 tggattatta catcgcactc acggtggagc tgtgagccat aaaaagcgag atattggtcg
     3181 ctcatttacc acccgacaac ggctgaacag tgaggcgaaa cgcagtatcg cagaaaatgt
     3241 gttggaatat ttacaaccag aatcggtgat tgctttagat gccagctcaa cctcttggaa
     3301 tgtggcacag cgtattccaa atattccttg caccgttgtc agcagttcaa tgcggattat
     3361 ctacagcctt tcacacaaac cgcacattaa aacgattgcc accggtggta tttattccga
     3421 aaaatacgat gccttctatg gtccattatc cgagcagtta ctgacccgtt taaaaattga
     3481 tcttgccatt ctttcttgta caggcattgc cgatggggcg atttgggaat caaatgaaat
     3541 taatatttcc cttaaacgta aattaattgc gaacagtaaa caggtttttt tattagccga
     3601 tcacagtaaa tttgagcgta aagacttgtt tcgtatcgaa gatttatctt gcattgataa
     3661 attatttatc aaccaacccc caccggactt tctcaaaaat tattgcttag cacatcaaat
     3721 tgaaatcatt atttagtgat ttctgcccga ttttattcag aaataaaaca aatcgggcat
     3781 tcttttttca ctcattttta ccaaaatccc ccattttttg tgatcgcact cacaaaattt
     3841 aaactaaatt cgcatttttc ttcataactc atattgcgta tgcataataa attcaatcgc
     3901 aaattttttt aaccaatcgg gagaactatt tatgacaacg ttgaaatcta cccctgtaaa
     3961 aattggtatc cgcccaacca ttgacggtcg ccgtttagga gtgcgtgaat cacttgaaga
     4021 tcaaacaatg aatatggcaa aagccgttgc acaattaatt caatctgaag tccgccaccc
     4081 aaatggtgat ttcgttgaat gtgtgattgc tgattccacc atcggtggtg ttgccgaagc
     4141 tgcggcttgt gcagaaaaat tcaaacgtga aaatgtcgga gcggtgatta ccgtaacccc
     4201 ttgctggtgc tacggttctg aaaccattga tatggaccca catatgccga aagccatttg
     4261 gggctttaac ggaacagaac gcccaggtgc agtttattta gctgctgctt tagcaggtca
     4321 tagccaatta ggtttaccgg cattctccat ttatggcaca gaagtacaag aagctgacga
     4381 tcaatctatt ccagacgatg tgcgtgaaaa attactccac tttgcccgtg ccggcttagc
     4441 agtggcaacc ttacgaggaa aatcatattt atctatcggc tctgtttcaa tgggtattgc
     4501 cggttctatc gtaaaccaac aattcttcca agaatatttg ggtatgcgta acgaatatgt
     4561 ggatatgacc gaaattaaac gccgtttaga tcgccatatt tacgatgccg aagaatttaa
     4621 attagcaatg agctgggtga aaacctattg caaagaaggt attgatgtca acgcaccgga
     4681 aaatcaacgc agcccggaag agcgtgaaaa actctgggaa gacgtggtga aaatgaccat
     4741 tattgcccgt gatttaatgg tgggtaatcc tcgcttagca gagctaggct atagtgaaga
     4801 agccttaggg cataatgcga ttgctgccgg tttccaaggg caacgccaat ggacagacca
     4861 tttgccaaac ggcgatttta tggaagctac cttgaattcg acctatgact ggaacggcgt
     4921 tcgcgcacca tacattatgg caactgaaaa cgacagctta aatggcgtga atatgttgtt
     4981 cggtaactta ttaaccggtc aggcacaaat ctttgccgat gtgcggacat actggagcga
     5041 agactcggta gaacgtgtca ccggctggcg tccggaaagc ggttttatcc acttaatcaa
     5101 ctccggctct gcggcgttag acggaacagg tcagcatacc gatagagcag gcaaaccaac
     5161 tattaaaccg gcttgggaag tgactgaaga agacggtaaa cgttgtttag aaaacacctg
     5221 ttggtgtccg gcagttcacg aatatttccg tggtggttta tcttcccaat tcttaaccaa
     5281 aggtggaatg ccgtttacga tgcaccgtat caacctgatc aaaggtatcg ggccggtttt
     5341 acaaattgcc gaaggttggt ctatcgactt gccggaaaat gtacacgaca ttttaaacaa
     5401 acgcgccaat gaaacctggc cgaccacttg gttcgtacct cgcttaaccg gaaaaggcgc
     5461 atttaccgat gtgtatagcg taatggcgaa ctggggtgca aaccactgtg tggcaacctt
     5521 cggacacgtt ggggcagact taattaccct cgcctcaatg ctccgcattc cggtttgtgt
     5581 gcacaatgtg gaagataaag acgtattccg cccaagtgcg tggaacggtt tcggtcaaga
     5641 caaagaaggt caagactacc gtgcttgtgc taacttcgga ccattatata aataatacac
     5701 aatcaccctc tccccttgtg ggagagggac agccaagcaa ttcgttcaga attgaatggc
     5761 agggagaggg ctacaagcgg tcgcttttct ctcaaaattt acaaatccct ctctctgatt
     5821 aaattgctaa acgcaattta atctatctct ctaaaaggga gatattagga taagtaaagg
     5881 agataacaat gccaatttct cttattttcg actgtggtgc caccaacctc cgtacgattg
     5941 cgattaatca agcgggtgaa attgtggcag cccatcatct accgaataac acacaaccag
     6001 atgtggaaag cccagaattt catatttggg atattgaaga gatctggtcg aaattaatga
     6061 cctgtgccaa acagacgctt tctcaacttt cagaacaaca acggcaagag attgttggga
     6121 tttcagtaac cacctttggc gtggacggtg cattatttga caaaaacggc aagcagcttt
     6181 atccgatcat ttcttggaaa tgcccgagaa ccctaccgat tatggaaaac cttgccaatt
     6241 atcttgatgt tgaggcgtta tatcaacgta atggcgttgg acattatagt ttcaacacct
     6301 tattcaaatt attgtggtta aaagagaaca aaccagaaat ttatcaacaa gctgagagtt
     6361 tcttattcat ctcatctatt ttgacttacc ttcttacagg cgtgcaaaca accgaccgca
     6421 caatggcggg aacgtcaatg atgacaaaca tcgaaaacga ttcgtgggat aaaacagttt
     6481 tagatttatt aggcttaacc gaaaaccatt ttcctccaat gaaaagtgca ggagaagttg
     6541 tgggaacatt aaaaggagaa atttcccaag agttaggttt aagcggtcaa attccagtaa
     6601 tttcttgcgg acacgatact caatttgcca tttttggctc aggagctggc tataaccaac
     6661 ctgtgttaag ttcaggcact tgggaaattt taatggttcg taccccaaaa gcaaaaccac
     6721 aatggcaatt cgttcaaaac ggcttaacca ttgagtttga tagccaatct ggttatttca
     6781 acccaggtgt gcagtgggta gcttcaggtg tgatggagtg gtttggcaaa cgtttcttct
     6841 ctgatatagc caatactgaa cattactacc gcacaatgat tgaagaagcg gcagaagtgc
     6901 ctgctggctc aaacggtgtg aaattagtcg gcaattttga tggcacaaca gctaaaacag
     6961 gttcaattat cggcttatct atgcacatca ctcgtggcga aatttaccgt gcaggcttgg
     7021 aatatatggc tcatcgtcta aaagaagggt tagatgtatt acaagaagtc ggtcatttta
     7081 atgctgagag tttgatttgt gtgggaggtg gttctaaaaa cgctttatgg aatcaaattc
     7141 gagccgatgt cttaaataga ccgattgatg tagtggattt ccctgaaagt accgtattag
     7201 gcgcggcaat gtttactttt acaggtgctg gtgtatttga aaatccaaat gcggctcaac
     7261 aggcagtgaa gccaaatgtg aaacgggttg agccatcgtc aaatagtcaa ttttataaat
     7321 aaagtttctc ccctctctct gatttgaggt tcattcagaa catcaaatca gagagagggt
     7381 aaaaaaggag ttcaaaatgt taaaaggtat tcacccggca atttctccag atttattaaa
     7441 agtcttagcc gaaatggggc acggcgatga attagtgctt tctgatgcac acttccctgc
     7501 tcactctatt catcaaaacg tcattcgtgc agatggctta agtgttgcca ccttattaga
     7561 aggcatttct gctctgtttg aatttgacca atacgttgaa gccccacttg caatgatgca
     7621 agcagtaaaa ggcgacacgc tcgatccaag cgttgaagag cgttacctca atgcaattaa
     7681 aaaagtaaac ggaacagccc cgaaaataga gcgtgtagaa cgcttcgctt tctatgatag
     7741 agccaaaaac gcttatgccg ttgtcattac aggcgagtta gccaaatacg gcaacattat
     7801 tatcaaaaaa ggcgtaacac cggtttaatt acaagcggtt aaaaaagcag aattttttac
     7861 aaatataaaa ttaaaaggag ttcaacaatg gacagaaaaa tactggcgag acaaatcatt
     7921 gatacttgtc ttgaaatgac ccgaattggg ttaaatcaag gtacagcagg caatgtgagc
     7981 gtacgttata aagacggtat gctcattacg ccaacaggta caccttatga gcaaatgacc
     8041 gaagattcta tcgtctttgt tgatggcaac ggcaaacacg aagagggaaa actcccttca
     8101 agtgagtggc agttccattt agcggtttat gaggctcgcc ctgaattaaa tgcggtagtt
     8161 cacaaccacg ctaaaaactg tgccgcagtg tctattttag gtgaacctat ccctgccatt
     8221 cactatatga tcgcctgcac cggcactaat cacattcctt gtgtacctta tgccccgttc
     8281 ggcactcacc aattagccga ctatgtacgt gaaggcatta aacacagcaa agcaatttta
     8341 ctcgctcacc acggcttaat caccgcagat aaaaccctcg aaaaagccct cggcatcgcc
     8401 cacgaggtgg aagtgatcgc agaatggtat ttgaaactgc tcgctacagg aaaacctatc
     8461 ccaacgctaa acaaagaaca aatggatatc gtactcggaa aatttaagtc ctatggttct
     8521 tgggtggaaa gcgaacaata gcctgccata aataacatac aagcggtgat atttcttaaa
     8581 atttttacaa acggagtgca gtatgcaaaa tgaagtaata ctcacgatga aaaacatcag
     8641 taaatccttt gcgggggtca atgcgttaaa aggtgttgag cttacgctgc gtaagggcga
     8701 agttcacgca ttaatgggcg aaaacggtgc aggtaaatcc accttgatga aatgcttgct
     8761 gggcgtatat caagccgatg aaggtgaaat catatataaa ggtcagcctg ttcgctttga
     8821 gtcggtatta gaggcacaaa aagcgggcat tagtatgatt ttccaagaac tgaacctcat
     8881 tccccattta acggtggcag agaatatttt cttcgcccgt gagccactca aacacggttt
     8941 agtggataaa gacaaaatgg tggaagaatc ggctaaattg ctgaatttct ttgagattga
     9001 tgttgatcca aacgatgaag tgagaatgtt gtcggtagcc aaacaacaga tggtagaaat
     9061 tgccaaagcc ctttcatttg atgtggaagt actgattatg gacgagccga cctccgctct
     9121 taccgaaaaa gagatcgata aattatttga attggtcgat agactgcgtg ccaaaggggt
     9181 gagcattgtc tatatttctc accgaatgga agaattaaaa cgtatctgta accatattac
     9241 gattttccgt gatggcacct atgtatctaa ccataaattc aatgaaatca cgatggatga
     9301 gatcattacc aaaatggttg ggcgttcatt ggataaccat ttcccaccaa aaaccgctgt
     9361 ggtgacaaac gacattatcc tctcgattat gaatgctgaa cgtaagggag tgtttgaacc
     9421 attgaacttt gacttacgca aaggagaaat tctgggcatt accggcttgg ttggagcaaa
     9481 acgtactgaa ctggctcgag ccatcttcgg agcagaccca cttgatagcg gtgagatttt
     9541 tgtgcacgag aacaaagtca gcattaaaga tccgagtgat gcaattaaag ccggtatagc
     9601 ctatttgtcg gaagaccgta agctcaatgg tgttgcagta agaatgtcga ttcgtgagaa
     9661 tatcacgatg gcatctatgg ataaagttgc caatcaaata ggtgtgattt cttacgatga
     9721 agaagaaaaa gcctcaaaaa ctttcatcga caaaatggaa atcaaaaccc caacgattga
     9781 gcagaaagtt caaaacttaa gtggtggtaa ccaacaaaaa gtggtaattg gtaaatggtt
     9841 attccgtgaa gcaaaagtga tgatttttga tgagccgact cggggaattg atgtcggagc
     9901 aaaatatgct atctatcaac tgctcgatga gcttgctgcc aatggcgtgg gtgttatcgt
     9961 gatctcttcc gaattgcctg aagtcttggg agtttccgac cgcatcattg taatgcgtga
    10021 aggtagaatg acaggtatgc tcgagactaa aaaaaccaac caagaagaaa ttatgcatta
    10081 tgcaactggt gttaaaaata tgtttgctcg tgaatatggg gtggaaaaat gaatgaaaaa
    10141 caaaaagaaa tgttaagaaa aatggctgca ttggctggct tagtactatt aatcatcttt
    10201 ttcagcgtaa ccaatgaata cttctttacc tccaataaca ttatgacagt agggctacaa
    10261 acctctacca ttgcgttaat tggtattggg gcaacctgtg tgatcttaac cggtggaatt
    10321 gatttaagta ccggttcagt agttgcactc tccggtgtgg cagctgcaat gattgtaaat
    10381 gccggtgtac ccgtaccact aggaatgatt ttagggattt tggtcggcgg tatttgtggc
    10441 ttaatcaacg gcattttagt caccagaatg aaattgcctc cgtttattgc taccctcggt
    10501 atgatgatgg ttgcccgtgg tttagcattg tatgttacca atgccgcacc agtttccgga
    10561 atgcctgaat cctttgccaa tctcggtaac ggagcattat ttaaaattgt ggaagaaggg
    10621 gcaaacggct tgccgaaagt ggtatttgca ggtattcctt accctgtgat tattatgatc
    10681 tttattaccg tactattcac tttcgctctc tctaaactga aagtcggacg ctatctttac
    10741 gcaattggtt ctaacgaaga agccgcacgc ttatccggca ttaaaaccaa tattgtcaaa
    10801 atctatgcct atgttgccag tggcttactc tctggtttaa ctggcgttat ccttgcctcc
    10861 cgcctcgtca ccgcccagcc aaacggtggg gtctcttacg agctggatgc gattgccagt
    10921 gctgtggtgg gcggcacatc gcttatgggc ggtgtgggta ctatccccgg cacactcatc
    10981 gggtcattca ttatcggggt actccgtaat ggtttgaata tgaatggcgt ttcttcattt
    11041 gttcaaatga ttgtcatcgg gcttgtgatt atcgtggcgg tctctctcga ccagctccgc
    11101 caatccaaaa aagccggtaa aaaataatcc actcttaaag gagaattaaa atgaaaaaat
    11161 cagcattatt tactgcgacc ctctttggtt tatcgacctt atttgcaggc agtgcaatgg
    11221 caaaatctga tgaaatcgct gtgattgtga aatctgccaa ctctaccttc tggcaaaacg
    11281 tgcgtaaagg ggctgaaact gccggcaaag atattggagg acaatacaaa gtcaccttcc
    11341 aagggccgga agccgaaaca gcgattgacg cccaagtgaa tatggtggac aacgccgtaa
    11401 accgtggcgt ggcaggcatc gtactggctg cctcagaccc ggtagcatta gtgccggcgg
    11461 tgaaaaaagc ttatgagagt ggcattccgg tggtgcttat cgattccggc atcaacagtg
    11521 acggcaaata ctaccaatct ttccttgcca ccgacaaccg tgcagcaggt aaattagcag
    11581 cggaaaaact gcttgccaaa gtcaaaggcg gcaaagtggc agtgatgagc tttacccaag
    11641 gggcagcatc agcgattgag cgtaccggtg gttttattga cgaaatcaaa gcaaaagccg
    11701 attacaaact ggtcggcccg tactactccg attcggatat gaccaaagcg ttaaaccaaa
    11761 ccgaagacgt attaggttct aaccctgatc ttgcagcgat cttcggggcg aacgaaccga
    11821 ctgcggtagg aatggcacga gcggtgaaac aaaaaggctt tgccggcaaa attgtagcgg
    11881 tgggctttga tggaaactcc gacctacaaa acttcgtgcg tgacggaaca ctagacggca
    11941 tcgtggtgca atcttcctac caaatgggct ataaaggcgt ggacaccatc ggcaagctga
    12001 ttaaaggcga gaaagtcgaa aaagtgattg ataccggggt ggtttatgtc acgaaagaaa
    12061 acattgatag cgaagaagcg aaaggtgttc tttactaaca ttcaagttaa acggggtggg
    12121 gttgcccacc ctttcagccg aaaggaagcc aatatgtcaa atacccttac cgataaagcc
    12181 ttagtggtga ttgccgcact tggcggtcga gaaaatattg tcgatgttta cgcctgtatt
    12241 acccgcctac gtgtggaggt gaaaaatacc gacattgtgg aatgggataa aattaaatct
    12301 gtcggtgcgt taggcgttgt gacctcaggc tcagttattc aatctatttt tggtagcgat
    12361 gccgaagcct accgtgatga aatcaaacgt attttgaata tttagcctaa gcacactcac
    12421 aacaaaagaa tcgcaacaag cggtgaaatt tttatcaaaa tttgcaaaaa aatgacgtaa
    12481 tttgaccgct tgcaagttaa tcgaattgtt taacttttaa gaaggaaaat agtatggcaa
    12541 atcgtcttat cctcaatgaa accagttacc acggcaaagg agcaatccaa aatattgttc
    12601 acgaagtgac cagccggagt ttcaaaaaag cccttgtggt aacagacaaa gacctgatca
    12661 aatttaacgt tgcccaaaaa gtcaccgcct tgcttgatgc cgcaggcttg ccttatgaga
    12721 ttttcgatga ggtcaaagcc aacccggcag tcgatgtgat caaagcgggg gtcgcaaaat
    12781 tcaaagcctc cagtgccgat tatttaattg cgattggtgg cggctcaccg attgatagtg
    12841 ccaaagcgat tggtattatc atcaataacc ctgagtttag cgatgtactt tcattggaag
    12901 gtgtcgcccc aacccaccaa aaatgtgtgc cgattatcgc cattccaact accgcaggta
    12961 cagccgcaga agtcacgatt aactatgtca ttaccgatga agcgaaaaaa cgcaaatttg
    13021 tgtgcgtgga cgttcacgat gtgccggcag tggcgttagt cgatccagat atgatggaat
    13081 ctatgccgaa aagcttggct gccgcaaccg gtatggacgc tctcacccac gccattgaag
    13141 gctacattac caaagcggcg tgggaattaa ccgatgctct acaccttaaa gcgattgagc
    13201 tgatcggccg ttcattgcgt ggtgcagtgg agaaaaatcc gaaagatgtc gaggcaatgg
    13261 cattgggaca atatgtggct ggaatgggct tctccaacgt tgggcttggc gcggttcaca
    13321 gtatggcaca cccgctttct gcctattacg acaccccaca cggcattgcc aacgcagtat
    13381 tactgccgta tgtgatggaa tttaataaaa attacaccgg cgaaaaatac cgtgaaattg
    13441 cccgagcaat gggggtaaaa ggcgtagatg aaatgagcca agaagagtac cgcaacgccg
    13501 ccattgctgc cgtacaacag ctttcacaag atgtcggcat tccgccaaaa ctgcatcaaa
    13561 tcggcgttaa agaagccgat ttagcggcat tatcggtcga tgcctttaat gatgtctgca
    13621 ccggtggcaa cccgagagat tgtacggctg aggagctgtt ggaggtatat cggatcgcat
    13681 actaagttct atctttgtta aatagacaag cggtgatttt ttaataaaaa tttgcaat
//
LOCUS       DANMGB010000057        13698 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.057, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000057 DANMGB010000000
VERSION     DANMGB010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13698
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.057"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(31..219)
                     /locus_tag="PXG19_001248"
     CDS             complement(31..219)
                     /locus_tag="PXG19_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066552.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDWLNIINANEEETE
                     TLIEWRNAFLQDVSVFIA"
     gene            623..1279
                     /locus_tag="PXG19_001249"
     CDS             623..1279
                     /locus_tag="PXG19_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HDL6066553.1"
                     /translation="MTNSLITVFDGTIQNTQIQLCNARELHSFVESKQQYSHWISDRI
                     TDYGFVQDEDYIIVTERTAGRPRKEYHITLDMGKELAMVERNEKGRQIRKYFIECERK
                     MKELLQNNQQNLPLALPEKKYTFEFTEDELQSLVWAWFAFVRGIHTFRYIYPMFQKLG
                     SNIAPEIYGQGFEYSHTAQSAHKILERITKEFDYDPMTNWRVLKHVRGFDPAFKKPTF
                     "
     gene            1513..2418
                     /locus_tag="PXG19_001250"
     CDS             1513..2418
                     /locus_tag="PXG19_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL6066554.1"
                     /translation="MQFQEHNNRKKADKFAEYITGEALRRYVAEKVKQYARNNVSVFD
                     GAAGSGQLEQFVRPTSFTAVEVQSESCDVLRHNFPTAQIYNQSFFLYPNGEPCDCVIM
                     NPPFSLKFKDLSQAEQAQIQSEFPWKKSGVVDDIFVLKGLANSHQWGFFILFPGVGYR
                     QTEKRFREEVGNQLVELNRIQNAFEDTPIEVLFLVVDKTKTTDDCSRELIDCAGGQIQ
                     QICADKWKIRPDHWESIQPPPPPQEEIKPLELEAFAREQAIERIVGEVRLSKLIAEFF
                     EPELRRTFNAFIDDICVAVQAEKIV"
     gene            2415..3734
                     /locus_tag="PXG19_001251"
     CDS             2415..3734
                     /locus_tag="PXG19_001251"
                     /inference="COORDINATES: protein motif:HMM:NF024795.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HDL6066555.1"
                     /translation="MNNIIKFTYGSICSGIEAASVAWHDIGTPLWFSEIEPFPCAVLA
                     HRFPDVPNLGDMTALPEKILNRKIPAPDVLVGGTPCFTAGHMVLTDKGYMPIETLSVG
                     DLVVTHKGQLKPILRVGSEIKPVGKLTAVGLPESIVCTPEHPFYAQKWQTINTKRNGK
                     YHRKTIISKPEWIEAHKLEGYQWVSLTDFSVMPYGGFHSKLTDDEVLLIAGYYLGDGW
                     IRRWKGKNKKAVVISVNKEKYRKFSLSFAKLPHHITTENNSVIKITICDTELADFLYS
                     QFGEKAGGKTIPAWCLSHSFRSKIFEGYMITDGSFRNGVYTANSISKSLAYGIAALSQ
                     TLGYISSVSKVTVAPTKEIQGRIVNQNDYYQMRAFLQSTSRKSRLDENRLLRSVQSFE
                     ITGNEVVYNIEVADDNSYILNNAVVHNCQSDKGGTVKASGGGFEWRE"
     gene            3655..4251
                     /locus_tag="PXG19_001252"
     CDS             3655..4251
                     /locus_tag="PXG19_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL6066556.1"
                     /translation="MPLSITANPTKAVQLKHQGEALSGGSETLVVHGTQDPIISQNKA
                     HCLGRNNGQENVLFEVKGAEAVRISEIQDKTPTLKARMGTGGNNIPCIALAGNTIGRQ
                     PQNDGNGNVFDESGVSYMLTRTDVHAVSAGTTIRKLTPTECERLQGFPDGWTKITYRG
                     KSAEECPDSPRYKAIGNSMCTNVMKWIGERLSAYLTSQ"
     gene            4229..4735
                     /locus_tag="PXG19_001253"
     CDS             4229..4735
                     /locus_tag="PXG19_001253"
                     /inference="COORDINATES: protein motif:HMM:NF024784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL6066557.1"
                     /translation="MRILPRNENYAATENGEIFSFLSNKILKPRPLKNGYLRVQLVDE
                     NGVKDYLIHRLVCETFHGYPDLHVNHKDRDKTNNRPENLEWCTRSENMLHCSRLGGFS
                     KQSERMKKMNIESCSVPVAAITLDGKLFKKYTSMTSAGKDGFSHSKISLCIQGKRKTH
                     KGYIWQKL"
     gene            4825..5100
                     /locus_tag="PXG19_001254"
     CDS             4825..5100
                     /locus_tag="PXG19_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6066558.1"
                     /translation="MEQPTEFLTKDELADLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            5060..6115
                     /locus_tag="PXG19_001255"
     CDS             5060..6115
                     /locus_tag="PXG19_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6066559.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITPQHIREYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNLPSPNIG
                     MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGY
                     LHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIR
                     EQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLGHTSVQMTKTYIRKA
                     PIVTPIKESVPSSKHQS"
     gene            complement(6367..6678)
                     /locus_tag="PXG19_001256"
     CDS             complement(6367..6678)
                     /locus_tag="PXG19_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6066560.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(6685..7077)
                     /locus_tag="PXG19_001257"
     CDS             complement(6685..7077)
                     /locus_tag="PXG19_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6066561.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            7209..7769
                     /locus_tag="PXG19_001258"
     CDS             7209..7769
                     /locus_tag="PXG19_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL6066562.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(7835..8824)
                     /locus_tag="PXG19_001259"
     CDS             complement(7835..8824)
                     /locus_tag="PXG19_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL6066563.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(9038..9955)
                     /locus_tag="PXG19_001260"
     CDS             complement(9038..9955)
                     /locus_tag="PXG19_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6066564.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(10091..10750)
                     /locus_tag="PXG19_001261"
     CDS             complement(10091..10750)
                     /locus_tag="PXG19_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6066565.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(10935..11999)
                     /locus_tag="PXG19_001262"
     CDS             complement(10935..11999)
                     /locus_tag="PXG19_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL6066566.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            12090..12998
                     /locus_tag="PXG19_001263"
     CDS             12090..12998
                     /locus_tag="PXG19_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6066567.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(13068..13619)
                     /locus_tag="PXG19_001264"
     CDS             complement(13068..13619)
                     /locus_tag="PXG19_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6066568.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
BASE COUNT         4089 a         3015 c         2891 g         3703 t
ORIGIN      
        1 atttgggtta aagaagacga tttatagtac ctaagctata aaaaccgaaa catcttgcaa
       61 aaaagcattc cgccactcta taagagtttc ggtttcttct tcgttggcgt tgattatgtt
      121 tagccagtca tcaacttttg acaaaataca ctcaacgcca cagctattaa tgaatggcga
      181 gtcctgattg attagccatt gtttgaaaag ctctttcata gtgttcccct tatgtttttt
      241 atgagattac tacgaaagcg ttttactgtc agaacgaaaa tttatttttt cgatgcagat
      301 cgcaaaaata gatattgagg tttgacaacc gcccccaatt cggattaaga taaccgcact
      361 ttcaacagaa agtcgggatt ggcctcctga attgttagcg gtgcggagag atgatagacg
      421 caccatgcgt ctttttttat atccgaaatt agcaaatcaa ccttttagat aaatttatct
      481 aaaagtccca atgatgagct agataggagt tccgaaagga acgcagttac cgctaactgt
      541 aaggccaatc ctgtctagtt catcaccaac gattggcctc tgcggtgatg agtgttaaaa
      601 cttattagcg gagaatgtca aaatgacaaa ttcacttatt accgtttttg acggtacaat
      661 ccaaaacact caaattcaac tttgcaatgc tcgtgagctt cattcattcg ttgaaagcaa
      721 acagcagtat tcacactgga tttcagaccg catcaccgac tacggtttcg tgcaagacga
      781 agactacatc atcgtcaccg aacgcaccgc tggcagacca cgcaaggaat accatatcac
      841 ccttgatatg ggcaaagaac tcgcaatggt ggaacgcaac gaaaaaggca gacaaatccg
      901 aaaatacttc atcgaatgcg aacgcaagat gaaagagctt ttgcaaaata atcagcaaaa
      961 cctaccgctt gcactgcctg aaaagaaata cacctttgaa tttaccgaag atgaactcca
     1021 aagcctcgta tgggcttggt tcgctttcgt gcgaggtatt cacactttcc gctatatcta
     1081 cccaatgttt caaaagctcg gttcaaatat cgcacctgaa atctacggac agggttttga
     1141 atatagccac accgcacaat cggctcataa aattcttgaa cggattacca aagaatttga
     1201 ttacgacccg atgacaaact ggcgagtact caaacacgtt cgaggtttcg acccggcatt
     1261 taaaaagcca acgttctaat cacaaaaaat tataaaaccc gaccgcttgc gaaacatcaa
     1321 gcggcggttt cctgcaccca aattttgagg attagacgat gaaatacgca aaaatcatac
     1381 tctttttaac cgcctttgca gttgctgctg accatctaga gttacgcaac gactgcgatg
     1441 gcaaaatttg tacagctcaa cgctaattaa cccaaccgct tgttccgcaa gcggttattt
     1501 tttggaggaa aaatgcaatt ccaagaacac aataaccgca aaaaagccga caaattcgct
     1561 gaatacatca caggtgaagc tctacgccgt tatgttgctg aaaaggtcaa gcagtatgcc
     1621 agaaataatg tttctgtttt tgacggggcg gcaggttctg ggcagttgga gcaatttgtc
     1681 cgcccaacct cttttactgc ggtagaggtc caatccgaaa gctgcgatgt gttacggcac
     1741 aatttcccta cggctcaaat ctataatcag agcttctttc tctatcctaa cggcgaaccg
     1801 tgcgattgcg tgattatgaa tccgccattt tcccttaaat ttaaggattt aagccaagcc
     1861 gaacaagcac aaattcaatc cgaatttccg tggaaaaaat ctggggtggt tgatgatatt
     1921 ttcgtcctaa aaggactggc aaatagtcac caatggggat ttttcattct ctttcccggc
     1981 gttggctacc gccaaacaga aaaacgcttt cgagaagaag ttggcaatca acttgtagaa
     2041 ctcaaccgca tccaaaacgc ctttgaggat accccgattg aagtcctatt cttggtggta
     2101 gacaaaacca aaacgaccga tgattgctct cgggagttaa tcgattgtgc tggtgggcaa
     2161 attcaacaaa tttgtgctga taaatggaaa attagacctg atcattggga aagtatccaa
     2221 ccgccaccac cgccacaaga agagataaaa ccgcttgaat tagaggcgtt tgcccgagag
     2281 caagcgattg aacgaattgt cggcgaggtt cgcttatcca agctgatcgc agaatttttt
     2341 gaaccagaat tacgccgcac ttttaacgca tttattgatg atatttgcgt tgcggtgcag
     2401 gcggagaaga ttgtatgaac aacataataa aattcaccta tggatctatc tgctccggca
     2461 ttgaggcagc aagtgtagcg tggcacgaca tcggtacgcc gttatggttc agcgagattg
     2521 agccgtttcc gtgtgcagtg cttgctcacc gtttccccga tgtgccgaac ttgggcgata
     2581 tgaccgccct acctgaaaaa atcctcaatc gtaaaattcc tgctcctgat gtgttggttg
     2641 ggggtacgcc ttgctttacc gctgggcata tggttttaac ggataaagga tatatgccaa
     2701 tcgaaacact ttctgtcgga gatttagttg ttactcataa aggacaacta aaacctattt
     2761 tgcgtgttgg cagtgaaata aaaccagttg gaaaattaac ggctgttggc ttacctgaat
     2821 caatcgtttg cacccctgaa catccttttt atgctcaaaa atggcaaacg ataaacacca
     2881 aaaggaatgg aaaataccat aggaaaacta tcatttccaa acctgagtgg attgaggctc
     2941 ataagctaga gggctatcaa tgggtatcat taactgattt ttcagttatg ccctatggtg
     3001 gttttcatag caaactgact gatgacgaag tccttctaat tgccggttat tatcttggtg
     3061 atggctggat aagaagatgg aaaggcaaaa ataaaaaagc tgttgttatt tctgtaaata
     3121 aagagaaata tcggaagttt tctctttctt ttgccaaact tcctcatcat attactaccg
     3181 aaaataattc ggtaattaaa atcactattt gtgacactga acttgctgat tttctttatt
     3241 cgcaatttgg tgagaaagcc ggcggaaaaa ctataccggc ttggtgttta tctcattctt
     3301 tcagaagtaa aatttttgaa gggtatatga ttaccgatgg ctcttttaga aacggagttt
     3361 ataccgcaaa tagcatttcg aaatcccttg cttacggcat tgctgcatta tcccaaacct
     3421 taggatatat ctcatctgtt tccaaagtaa ctgttgctcc gacaaaagaa atccaaggaa
     3481 gaattgtcaa tcagaatgac tattatcaaa tgcgagcgtt cctccaatcg acatcaagaa
     3541 aaagtcgcct tgatgaaaat agattattga gaagcgtgca atcctttgag ataactggaa
     3601 atgaagttgt ttataacatt gaggtggcag atgacaacag ctacatctta aataatgccg
     3661 ttgtccataa ctgccaatcc gacaaaggcg gtacagttaa agcatcaggg ggaggctttg
     3721 agtggcggga gtgagacgct agttgttcac ggtacgcaag atccaattat cagccaaaac
     3781 aaagctcatt gtttaggtcg aaacaacggg caagagaacg tcttatttga agtaaaaggt
     3841 gctgaagctg tacgaattag cgaaattcag gacaaaacgc caacactgaa agcaagaatg
     3901 gggacgggtg gaaataatat cccttgtatt gcccttgccg gtaatactat cggcagacag
     3961 ccacaaaacg acggaaacgg caacgtattt gatgagagtg gtgtaagtta catgcttacc
     4021 cgaactgatg ttcacgctgt cagtgctgga acaactattc gaaaacttac tcccaccgaa
     4081 tgcgagagac tacaaggctt tccagacggc tggacgaaaa tcacataccg tggcaaatct
     4141 gccgaagaat gccctgatag cccacgatat aaggcgatag gaaattcgat gtgtacaaat
     4201 gtaatgaaat ggataggaga gagattaagt gcgtatctta cctcgcaatg aaaactatgc
     4261 agctaccgag aatggagaaa tttttagttt cttgagcaac aaaatcttaa aacctagacc
     4321 tttaaagaat ggttatttaa gagttcagct tgtagatgag aatggagtaa aagactattt
     4381 aatccataga ctggtatgcg aaacttttca cggttatcca gatctacatg taaatcataa
     4441 ggacagagac aaaacaaata accgacctga aaatttagag tggtgtacac gctcagaaaa
     4501 tatgttgcat tgctcaagac ttggaggttt tagcaagcag tccgagagga tgaaaaaaat
     4561 gaatattgag agttgctcag ttcctgttgc cgcaataact ctggacggga aattattcaa
     4621 aaaatacacc tcaatgacaa gtgcaggtaa agatggtttc tcacattcaa aaatcagcct
     4681 ttgcattcag ggtaaacgca aaacgcacaa gggttacata tggcaaaagt tataatggcc
     4741 gtcccttgta tgcggtggat aggacaaagg cttaacgatt atttaactca atccctctaa
     4801 atgagggggt tatttggaga gaatatggaa caacctactg aatttttaac gaaagacgaa
     4861 cttgctgatt taacaggcta tcgtcaaaag aaaagacaaa tcgaatggtt gagggagcgt
     4921 cactatataa ttcaagatga aaacaagtat aagccattag tgctatacaa agatgtctat
     4981 gggcaccccc gccaacaata tccagaagct caatccactg ggaaatggaa atcacctgct
     5041 tatttaatgg gagtgaaaaa tgggaagacc acgcaaacaa cagaatcgct acttacctga
     5101 gaatttacgt ccaaaaacag ttacacgaaa atcaggcaaa actgtcattt attggctata
     5161 tcgcacgcac ggaaaaacgg aaatctctct aggcacaaat agaaatgagg cttttattaa
     5221 ggctgctcaa ctcaatatag aaagagaaag ccaaactgcc agaattacct tcgggcttgt
     5281 agccaaacgt tatcgagatg aagttatacc tcagaaaaaa gcgagcacag cacaaacaga
     5341 tttgtgcaag ataaaaaatc tactgctatt ctttaatgac gctcctctcg aagaaatcac
     5401 ccctcaacat atccgagagt atatgatttg gcgaaaagac acacctggat ctgctaataa
     5461 cgaattttca atgttcagtc atatttggca atacgctcga gagtggggtt atacaaactt
     5521 accaagccct aatatcggaa tgaaacgcta ccctatcaga aagcgtgaaa tttacgttga
     5581 gaacaatata tttcagatgg tatatgaagt ggcagatcag gatatgagag acttaatgga
     5641 tctcgcctat atcaccggac aacgtcctgt cgatttggtc aatatccgga aagaacacat
     5701 ttttgatggt tatctccata ttgttcagca aaaaacacaa gccaaactac gtattgagat
     5761 agtgggaaaa ctggctgata ttatccaaga taggctggag aaagctactg gaacacactt
     5821 attcagcact aagaaagggg aaaagctaac cgctagaaaa ctaggtaaaa ggttcactta
     5881 tattcgggaa caagcggtca agaataaccc ggaatacgca aatgaaataa tggcattcca
     5941 atttcgggat ctaagagcta aatcaggaac agataaagcc ctttctctag gtgaagaagc
     6001 cgctcgccaa caactaggtc atactagcgt tcaaatgacc aaaacataca ttcgaaaagc
     6061 cccaatagta acccctatca aagaaagtgt tccctcctca aaacaccagt cttaaaagac
     6121 agtttcggaa cattttgcat tttttcggaa cgtttacata aaaatcactt ataatagatt
     6181 gaaagataag taatttttgt tactcgttat tactgataat atttttaata aaaatgaccg
     6241 cttgcctttc aacaagcggt cattcccctt taatttttta ccaccgtaaa caccttattt
     6301 ttcagccgat attcactttt ttcatcgtga gccagttgca caatggttgg cttgcgttta
     6361 cacaattcac gcattgcaca cgccgtcaat gttgccagca agcatatctt gttcagagta
     6421 agaggcatcg ccgccaatca aaatataatg ctcgcccata tccaccacca ccgccaaatg
     6481 ccccagcgta tgtcctgcgg ttggcacaag gcggattttg ccgtctttgg tgagtttatg
     6541 actgctctca aaactttcaa acgccccatc attaaaatag atgccatcag gcttaaacca
     6601 atcaggatag tgcattgtta aataaccgtt catcaccgca ttgggggcgt tgattgcctg
     6661 tttttcagtc tcactcatca caaatcagct gtttgggaaa ttgggcaatc cgcctgcgtg
     6721 gtcgccgtgc atatgggtca ttaccaccgt gtcaatgcgt aaagggtcaa agccgtttgc
     6781 ctttaaaatt tcgcccactt cttcgtgttt tttgacccca cgccgttcgc aaaactgcat
     6841 aaacgggtgc caccacggct gatagccctt gtcgttggca cgactgcttt cgcccgtatc
     6901 caccaaaatc aaaccgtcat cgtgttcaat cagccagcaa ccaatcggca gtttaggcga
     6961 ccatttttta tcggtcagca catcaagcac acgggcagga cgggcaaaaa agcgtgccac
     7021 ttgatgatga attttgattt gtacccaacc tgttgtcaga caatgcactt taatcatttt
     7081 tgtgttctca ttaaaaaatc gtgggcatat tgtagaaagt gcggtaactt ttcacaaaca
     7141 ttaaaaagtt cgtatttggc tggatatgca gataaaatta caaaaatgta tgcttatttt
     7201 gaaaaaagat gaacgattta agagtaatca aaacccatct agcaatccaa aacgctttga
     7261 ttgaattatt agatgaaaag ctgtttgaaa aagtgcaagt ccaagaaatc attgaaaaag
     7321 ccttgattaa ccgcaccact ttttaccgtt attattcggg cgaaagtgat ttggtcggca
     7381 aattgataaa agaggtgaag gcggaatatc aagacctgct caaaaagcgt tttgaaagcg
     7441 gtaatttgct gcgatttatg caaaccattg gcaaccgctt attggaaaaa agacggctga
     7501 ttttggcact ttggcaaatc aaaacccctc gccatcattt gtatgacgat atgcacatgc
     7561 tgttaaaaaa cgcctttatc gcccacgcca aacggataac atcagatgat aaaaactggg
     7621 ctgagaaaaa ttgggattac caagcccata tttttgccac cattgccctt gaaagccata
     7681 aatattattt tgaacaaggc aaacttttgc ccattccaca ggtgtttgag gagtggatag
     7741 aaatggtgca ggtgttgaaa agtgtttaga aataactggt aaaattttcc ataaaaaaca
     7801 ccgctttcat cacaaaagcg gtgctttcaa atcatcaaac cttaaccaca atcttaccaa
     7861 tctgctgatt gcttgccata tattcgtgag ctttaaccat ttcatcaaag gcaaagattt
     7921 tgtcaatttc agggcgtaac tgaccgcttg ccaaaccgtc atagacaaag gttttggctt
     7981 gtgccaattt ttcaggtacg gtggtaattt caaagagttc atacccccgc acggtcaaat
     8041 gcttacccaa aatcgggaac actggcacag caatatcatc atggcttaac gctccataaa
     8101 tgatgtaacg accatcttgt gccattgcat tgatgatttt tgccgcctct tttctgccca
     8161 cagggtcaaa taccacattg acgcctttgc cattggtgat ttcaaaaagt ttggcggtta
     8221 catcgtcttc gcttgtggca atcacaaaat ccgctccttt ttccaaaagt acatcgcctt
     8281 tggcgtgggt gcgagacaag gcaatcacgg ttgccccttg cattttggcg atttggatac
     8341 tggctaaacc aaccgaactg gttgcaccgc ccagcaccac aaaatcgcct ttttgtactt
     8401 tgccaaactc aatcagtccg ccataagcgg taacaaacgc catccaactg gcggacgctt
     8461 gttccattga caaattatca gggtgcttga ccacagcgtg ttttggcata ttgacgattt
     8521 cgccataagt gccgtattcg gtaaacataa aggacggaat aatgctcacc ttatcgctaa
     8581 tggcaacttc gttcacaccc tcgccaatcg ccacaatcac accagcccct tcataaccca
     8641 aagtcgcagg gaatacaggg tcaatcacat acgccccttc acggtacatc atttcggcac
     8701 ggtttaagcc aatggcttgg atttggattt gtacttcgtg tgcttttggt gcaggaattg
     8761 ctacatcaac gatttgcaag acatcaggcg aacctgtttt tgtaaattgg atttgtttgc
     8821 tcattgtttt gaccttttgt gtaaataatg ggcgtatttt aatgcaatga atttatttta
     8881 aacacaacat caattgcaaa acacttttgc taaatttaca taaatacatt ttcacaatgt
     8941 ctgaaaagtt gttttgcaaa ttttaaaaag aaaaccaccg cttgccgatc acaagcggtg
     9001 gtttttgtgg gttattttgc aagaggtgtc agcttggcta cagtaagcgg ataaatgcga
     9061 cgccggctaa gagtaaggta acgccgatga tctgcagcgg tagaatgggt ttttgtgtaa
     9121 tgccgaacag accgaattta tctaccagca ggctgccgca aatcaggcca gagaggacga
     9181 gcatcaccac cgagcctgtg ccgatttggg ggacgagcca aacgccagcg aggataaaca
     9241 ggctgcccag tatgccgccg ctccatatcc aaaacggttt gccttcggtt ggctggcaga
     9301 gtttcggcag gcttttttca taaaacagca ctaccagtaa taagccgatg gcaccgacac
     9361 cgaaggagac tgttgctgcg ccgagtgatg agccgggctg tctgccgaat tcgccattaa
     9421 cggcggcttg ggttgctaat gcggttccgc ctaatatgcc gactgcgcgc cacagccata
     9481 aatttgcgtt ttctttgcgt tttagaccgg acagatgggg cagtaccacg gcaatccata
     9541 cgccgaataa gactaaacca atgccaaaca ggcggctggc cgtgaaggct atgtaaggcg
     9601 agttaagcca agcgaaagtg tcgatcagca cgcccatcag cacttggcct aaaatcggca
     9661 tgaccgcagt ttgtacgccg ccgagcttgg ggaagatcag tacgtttgcc gttagcccca
     9721 ccatgccgag taatccgccc gtccatgccc ataaggggac gttgcctaaa ttgtcgaggc
     9781 taaatgctgg tgtttgttgc atgatgagcg agagtccgag tagaaacagg aggcctacgc
     9841 tgaaagagac aaacgaggtt aaaaatgccg cacccacgtg catacgcaaa cgggcgttga
     9901 tggctgattg aaatgcaatc agcacgccgg ctaaaatacc gataataaat gtcatgacta
     9961 actgggttgt gctgccgcct caaaatgagt ggtggttgaa aagaaatgcc gtctgaatgc
    10021 ggattcagac ggccttaagg cttggtatcg gcgtttacct gatgttgaat agccgttttg
    10081 cctagccggt ttattcgatg aatttcacca cggtttcgaa atctttacgt gctttttggc
    10141 ggatttcttt atcacggtaa ccgaaggtac acatcaccga tacgccccat tcgcttgggt
    10201 caaataatcc ttccgctgcc aaaatatcgt tgacttcttg gtaagcgaaa ccttctatcg
    10261 gacaagaatc tacgccaatt aaagctgcac cggtcatcat attgcccaat gcgatgtagg
    10321 tttgtttgct tgcccagtca aacaggctgc gttcgctgtc taaaatgccg atatctttct
    10381 cttggaattt tttatacacg gccatggctt tttcgcgcgc ttcgccttgt aaacctcgtc
    10441 tatccataat ttcagaaaaa tattggctgt cgtaacgggc atttttcttc gctaaaatca
    10501 ccacgatatg gcttgaggtt tccatagttg gaatgcccca gcagtaaggt ttgatttttt
    10561 gccgtaattc agggttttgc aacactaaaa actgccaagg ctctgagcct accgaacttg
    10621 gacttaaacg accgagttcc agaatatagt tgaaatcttc agccggaatt tttctgctgc
    10681 cgtcgtaaga acgggtagat gcacggtaat gaaaggcatt gattacgtct tctttgttga
    10741 aaaattgcat ggaacactcc taaaaatgca aaacagtctt ttcagacggt ctgaaaagtc
    10801 tagatgaaat acggataagt ataaaagatt taagttattt ttaataattg ataattttga
    10861 tatttaggta taagttgacg tgatgagaaa aaacagaccc tctgaatgtt caggcggtct
    10921 ttaacgttgg ttgtttacat aaataatccg cgttcatatt gcttcggtac aaactgcatt
    10981 tcactgctgt ctgctgcatt ttggtcatat tgcgcattca atacccagta cggatcgcgc
    11041 aataaggctc ttcccacagc cactaaatcc gcatcgccca tacctaagat atgatcgcct
    11101 accgccggat tatccaacat acctactgca attaccggtt tgcccgtagc gagcttcact
    11161 tgacgggcaa agtctacttg gtaacctgcg taaaattcgg ggtgattacc tgcatgcaat
    11221 acaccatcac caccaccgct gatgtctaag acatctgcgc ctgcatcggc aaaacgtttc
    11281 gctacctgca aaccataatc caagccaaag ccgttttcac cgtattcttg tgcagaaatg
    11341 cggacaatta acggcatttc agacggcatc acttcacgtg ctgcctgaat cacttgctcg
    11401 ccaaacaaca ttttgtcttg gccgtactca tcactgcgct gattggattt cggcgaatag
    11461 aattggtgaa ttagataacc gtgtgcgccg tggatttcaa ttgtatcaaa gcctgcctca
    11521 acggcacgtt tgaccgaatc cttaaaggct tgaaccaatg ctttgacttc gtctgtcgtc
    11581 agctcgcgag gtgtaatcag attttgtccg gcataatcca actcaccgta gtgaattgca
    11641 cttggagcca ctgcatccgg ctcgtcttgg gctttgcgtc cggcatgggc gatttgcaca
    11701 ccgatttttg ccccttgagc atgaacgctg tctaccagtt ttttgaatgc ctgttgttgt
    11761 tcatcgttcc ataagcctaa gcagtttggc gtaattctgc cgtttggcgc cacattggtc
    11821 atctccacaa taatcaagcc gacaccacct actgcacggc tggtgtaatg cacgaaatgc
    11881 caatcgttcg gtacgccgtt ggttgccgaa tattgacaca ttggtggcat aaccacacgg
    11941 tttttcaatg ctaagttttt aatgttaaac ggggtgaata attttctgaa cttcgccatg
    12001 ttgccttcct taatgaaata gattaggtgg aatgataatt cagtgctatt atctattcaa
    12061 attgattatt gtgatagtta ggtataaaaa tgagtgatat aagaacactg gatttcaatt
    12121 tgctcaaagc ttttgtggtg ctgctggacg aatgcaacgt tagccgggca gcacaacgat
    12181 tatccatcac ccaaccggca atgagcggta ttttaaaccg cttgcgcgag agttttaacg
    12241 atccgttatt tgtgcgagtg caacacggta tgcagccaac cgaccgcgcg ttgcaactgg
    12301 ggcaaaccgc acgcaacatt ctgcaagata tcagctccat gctgcaacca cccatattgg
    12361 aaccggaaca tctgaatatg accttgcgta ttgccgcaat ggattatgta caacaaatta
    12421 ttgccttgcc gctgattctg cgtttaagac ggcttgctcc gaatgtaaaa gtcgccttac
    12481 tgccggtgca ggggcaaaat atcaaaactt tgttcgagca aaaaaaaatc gatcttgcct
    12541 tggtcagccg ccaacattta agcacggata cgctgaaaac ggtattatat gaagaacgct
    12601 acgtatgcgc gatgagcaaa acacacccga tggcgcaaac accgctatcg ctcgatcaat
    12661 tctgcaatct tcccttcgca atgctttctt acaacggcgg agaattcagc ggagctacgg
    12721 atctagcgtt acaaaagata ggactacagc gcaaagtaat ggtctcggta aaccatattt
    12781 ccctgctgcc ccagctgcta caaggttccg acttagtcgc agtattgccc gaacgcttag
    12841 caaaaacctt acccaatgtt tatttacaac ctccgcctat agaggtagaa ggcttcacca
    12901 tgatgatggc ttggcacgaa agaaccgaac aagatacggc gcatcgatgg ttaagagagg
    12961 tgctgcaggg tgtggtaaaa cctaaacagg ctctttaatt attctttctt ttgctatgaa
    13021 aaaagccgtt tatattttta gataaacggc ttttttgcat tctaatatta gtatttttct
    13081 acaaactgag cataggcatt aatgaagttt tgcattgagc tttttaatgt ctcagaggca
    13141 atttcaccct gttcatcaaa tacgcctgta aataagtttc ctacgtttaa tgcgaaaggt
    13201 aaggttggca tatttacaaa tgagcctgaa gtaatagtac gtacttgatc agctgcacgt
    13261 acaccgcctg ccgggcttgc gccaacggtt acgatacctg ccggtttgcc aatccatttg
    13321 ctttgcccca ttgggcgaga aaccacgtca atcgcatttt taagcattgc agaaaagctt
    13381 gcattatgct caggtgtgac taataacacg ccatctgcca cagcaaccgc ttcacgcact
    13441 ctggtgtatt gtgccgggct gttttcatct aaatcacggt cgtaaagtgg taagtctgca
    13501 atatccacaa tgtttaattg aatgcttgca ggtgccattt tttgtaagtg acgaacagtc
    13561 aagtgactaa atgaagtttt gctgccgcta ccaattaata ctgcaatttg ttttgccatt
    13621 ttataattcc ttagtacata gagaatatag gcattttatc cctttcaatc tgtttcataa
    13681 agcgcttatg atgaaaag
//
LOCUS       DANMGB010000058        13678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.058, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000058 DANMGB010000000
VERSION     DANMGB010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.058"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            23..496
                     /gene="nrdG"
                     /locus_tag="PXG19_001265"
     CDS             23..496
                     /gene="nrdG"
                     /locus_tag="PXG19_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL6066569.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKNQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            493..2274
                     /gene="nrdD"
                     /locus_tag="PXG19_001266"
     CDS             493..2274
                     /gene="nrdD"
                     /locus_tag="PXG19_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL6066570.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2331..2427
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2484..3302
                     /gene="thiM"
                     /locus_tag="PXG19_001267"
     CDS             2484..3302
                     /gene="thiM"
                     /locus_tag="PXG19_001267"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL6066571.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3295..4608
                     /locus_tag="PXG19_001268"
     CDS             3295..4608
                     /locus_tag="PXG19_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6066572.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4744..4840
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4908..6437
                     /gene="thiE"
                     /locus_tag="PXG19_001269"
     CDS             4908..6437
                     /gene="thiE"
                     /locus_tag="PXG19_001269"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL6066573.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6430..7602
                     /gene="cytX"
                     /locus_tag="PXG19_001270"
     CDS             6430..7602
                     /gene="cytX"
                     /locus_tag="PXG19_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL6066574.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7641..7850
                     /locus_tag="PXG19_001271"
     CDS             7641..7850
                     /locus_tag="PXG19_001271"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6066575.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7858..8034
                     /locus_tag="PXG19_001272"
     CDS             7858..8034
                     /locus_tag="PXG19_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6066576.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8075..9931)
                     /gene="sppA"
                     /locus_tag="PXG19_001273"
     CDS             complement(8075..9931)
                     /gene="sppA"
                     /locus_tag="PXG19_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL6066577.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10034..10597
                     /locus_tag="PXG19_001274"
     CDS             10034..10597
                     /locus_tag="PXG19_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6066578.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10668..12992)
                     /locus_tag="PXG19_001275"
     CDS             complement(10668..12992)
                     /locus_tag="PXG19_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL6066579.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(12992..13546)
                     /gene="pilW"
                     /locus_tag="PXG19_001276"
     CDS             complement(12992..13546)
                     /gene="pilW"
                     /locus_tag="PXG19_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL6066580.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
BASE COUNT         3678 a         3122 c         2974 g         3904 t
ORIGIN      
        1 atattgtgtt aatgaattag taatggaaaa tctcagattc agctcggaac aaattgtttg
       61 gcaagaagtg ccgaatgaga cctcacttgc ttttctgatt acaggctgcc cgcttggctg
      121 taaaggttgc catagtgcgg atagctggaa agcctgtctt gggaaagagc ttagcagtga
      181 atatctctct gaacgcctaa aacgctacca aggcttaatt agctgcgtat tgtttatggg
      241 cggagaatgg gaagcagaaa aattactgcc gctgttgcaa ctggcaaaaa accaggggct
      301 aaacacctgt ctttatagtg gtttggagca gcacgaaatc gccgagactt tattacacga
      361 gctaacctac ttaaaaaccg ggcgttggat tgccgaacga ggaggattgg aaagtttaac
      421 caccaaccaa cgctttactg atttacgcaa taaccaaaat cttaaccatc tttttattcg
      481 aggagcttca atatgattcg cttacaaccg acacaattag acggaaaact acatttcatt
      541 aaccaatata ttcaagccaa aaatgccgca gacggttcaa aaatggacgc caacgctaac
      601 gtcacgcaaa aaaacatagc gacaatggaa caggagctaa tgaaagattt ttttgtgcaa
      661 atcaaccgag caaaagtgag tgaaaaaatt gcaaaaattt ttggaaaaga aaccgcttgt
      721 gaatatttac gtcaaatcga agcacacgaa atttacgtac acgatgaaac cagcctaaaa
      781 ccctactgcg tttcagtcac tatgtaccct ttcttgcgtg atggtttgac taaactcggc
      841 ggcgaatcca aagccccgaa acatttagcc tcattctgcg gttcttttat caattttgtc
      901 tttgcagtca gttctcagtt tgccggtgca gtcgccacgg ttgaatttct gacctatttt
      961 gactattttg cccgcaaaga ttacggcgat aattacttac agactcatcg ttcagatatt
     1021 gaaaaccacc tgcagcaggt tgtgtatagc atcaaccaac cggcagccgc tcgtggttat
     1081 caaagcgtct tttggaatat ttcagtgtat gacaaattct attttgaagc gatgtttagc
     1141 cgttttgttt ttcctgattt tgagaaacca aattgggaaa ccacttcaaa attacaactt
     1201 ttctttatgc aatggttcaa taaagagcga agcaaagcga ttctcacttt ccctgttgtg
     1261 accgcagcaa tgcttaccga aaagggcaaa tgtaaagatg acgagtttgc caatcaaatg
     1321 gcaaaagagc tatctcaagg caattcattc tttatttatc aatcagataa tccggattcc
     1381 cttgcttctt gctgccgctt gagaaatgaa atcagcgatc atagcttctc ctattcatta
     1441 ggggctggag gtgttgcgac aggttcaatc aatgtaatta ctattaatat gaaccgtttg
     1501 gtgcaagata accgtgattt aagcgaagaa gtcagcaaga tccataaata tcaatacgct
     1561 taccgcaaac tgatggaaga gtatttagct gccggtatgt tgccggttta cgatgccggt
     1621 tttatttcac tgcataaaca attcctgact attggcatta acggaatggc agaagctgct
     1681 gaatcacaag gtttaaccgt aggttacaat ccagactata ttgattttgt gcaatctcgg
     1741 ttaaaaatta ttttccaagc taaccaagca gccggtgaaa agtatggggt aaaatttaat
     1801 accgaatttg tgcctgctga aaatttaggg gtcaaaaacg ccaaatggga caaagaggac
     1861 ggctatttcg taccacgaga ttgctacaat tcctatttct atgtggtaga agatgaagaa
     1921 attaatgctt tggataaatt cttactgcac ggcagagagc tgattgaatg gctggacgga
     1981 ggctccgctc tacacttgaa tttagacgaa gccttaaccc aaaccggata tcgctccttg
     2041 ctggataccg ccgctaaaac cggctgcaat tatttttgta ttaacgttaa aatcacgatt
     2101 tgcaacgaat gtagccacat cgacaaacgc acgttgcaca gttgtagcaa atgtggctcc
     2161 gataatattg attacggcac tcgggtaatc ggctatttaa aacgagtctc cgcctttagt
     2221 tccgcccgcc aaaaagagca cagcttgcgt ttctatcacc gagaagcagc ttaattgaaa
     2281 actgcagttg tagcccttta caaccgcttt tttagtgatt atattaaagc ctcatttagt
     2341 cggggtgctt gcctaagggc aagctgagaa atacccgttg aacctgatgc agttagcact
     2401 gacgtaggaa actaaaggcg taaacccatc tattccccgt tggtgttggt gcgttgtttt
     2461 tcaatcatat taaggaataa acgatgacca catcactccc ctatcactcg cattatttgc
     2521 aaaaaattcg acaaaatcga ccgcttgttc acaacattac caacattgtt gccgctaatt
     2581 tttctgccaa cggcttattg gctcttggtg cttctcccat tatggcagct gctattgagg
     2641 agatggaatc cgtgccggca ctcagtaacg ccgtggtgat taatatcggc acgcttatcg
     2701 gcaaagaagt agaagcaatg gagcttgctg gcaaaaccgc caaccgttta ggtattccgc
     2761 tcattcttga ccctgtcggc gttggagcaa cacctttccg ccgtcaaaca gttgaaacct
     2821 tagtcgacca aattcacttc accgccattc gtggaaatgc gggggaacta gctaccctcg
     2881 ccggtgtaga atggcaagcc aaaggcgttg atgccggcga aggctcgcat aatgtggttg
     2941 aaatcgccca acagattgcc aaacgttacc aaaccttagt cgcaatcagt ggtgaaaccg
     3001 atgtggtaag ctctggctca cacacagctt tattgcacaa cggcagcccg atgttcccca
     3061 aaattaccgc ttcaggctgt ttattaagtg cggtatgcgg ggcattctta gccgttgccg
     3121 acaaagagca ctatttcaac gcacttattg aggcttgcgc cgcttatgcc gttgcaggcg
     3181 aagtggctgc tcaagcactc aaaccaactc aatacgggca atttgccgtc aatctgctgg
     3241 atacccttgg ggcattaacg cctgaaaccg ttgagcaata tgtgagggtt gaatatgtct
     3301 aaaactcact caaacccaac taaagtggcg gttgcctcaa tggtcggcac ggcgattgaa
     3361 tattttgata actacatcta cacgatggca gcagtgctgg tgtttaatgt gcagtttttt
     3421 aatagcgatg atccggtttc caaccaatta atgtcgcttt ccgtactagc tcttgccttt
     3481 ttcacccgcc cgatggggtc gattttattc gggcatttcg gcgataaata cggacgcaaa
     3541 caaactctga ttgcctcgct cttattaatg ggcttatcta ccgtagcaat cgggcttttg
     3601 cctaattatg ccgccattgg catttgggca accgtgttac tctgcctctg tagaatcgga
     3661 caaggtttag gcttaggcgg cgaatggggc ggagctgctc tcgttgccac tgaacacgcc
     3721 ccgaaacaca agcgggcatt ttttggtatt tttccgcaaa tgggcgcccc aatcggcttg
     3781 ctgttggcaa acggagcgtt ctacttggtg aatttaattt acggtgaaca aaccttcttg
     3841 gattgggcgt ggcgaattcc gtttgtcgct tctattgtga tgatcgccat tgggctttat
     3901 atccgaatta agatcagcga aagcccgatt ttccttaaag cggaacaaca aggtaaaaac
     3961 cgccataccc cgcttaaaac tttgtttagc caacacctca agccttttat gatcggcgtg
     4021 ctgattgcca ccgccggcta tgtgttgttc tacattttag ttgctttcac cccgattttc
     4081 gtcaaaagcc cggtggcagt ttctcaagca ggacacgcta caggcttagg tttaccggta
     4141 aatctctaca cccaatattt gctgattacc tccgtgattt tcggcattgc gattttcttc
     4201 tccggcattt attcagacaa aatcggacgc cgtttactgc tgttacttgc cacaggagca
     4261 accgtagttt acggcttaac aatgccgttt ttcctcgaaa acggcacacc gacttcgatc
     4321 tttattttcc tcaccattgg aatgatctta atcggcttaa gcttcggccc gatggcagta
     4381 attctacccg aactcttccc aacagaagta cgttacacag gggcttcgct tgcctacacc
     4441 gctgccggta ttttaggagc tagcgtgttc actattattg cggtcaaaat caatgaaaat
     4501 ttcggcttat tcggtgtagg cggctattta tcggttgcct cattactgag cttctgggca
     4561 ttgtggcaag tccacgaaac caaagatttg gaattagagg agatataaaa aaccactcac
     4621 ttaacgacgg ggcaagttac caccttgccc caagatgagg gaatgcaaat ttccctctaa
     4681 tagacttcac aacggatatt ttgcattttt ttataaaaaa taaccgcttg taagctatac
     4741 taaaaacgct tgtcggagtg ccgtaaggct gagatcgcaa cagcgagatc cgtggaacct
     4801 gtaggttagt acctgcgtag ggaacaagtt ttacccaaat tcagattttg ggatcattac
     4861 cacatctctg gcaagcaaaa ccctaagcat attatgagga ttttgcgatg tctaattatt
     4921 caaactctcc ataccaacct aacgtcattt ggacggttgc cggctcagat tcctgtgccg
     4981 gtgccggtct gcaaaccgat ttacatacct ttcacgattt taacctagtg ggttgttcag
     5041 tagttacttc tgtaacggct caacatccgc acggtgtgct gtgtgtaacg cctgttgatg
     5101 atcacacctt ccgccaacag tttgaagcct tgctggttca aggctacccg aacgcaatca
     5161 aaatcggctt actctgctcg caagcacaag tagagatctt gtgtgaatat atccaaaaaa
     5221 tccgtgcaga aagctcgcat tattgttatg tggtttacga ccctgtggca gtggcaagca
     5281 gtgggcaggc gttatccgac agtattttat tgcagatagt gcaacaaaaa ttgtatccgc
     5341 tggtggattt aatcactcca aacggcactg aactcgcttt attaagcgac acagaaatcc
     5401 agacctttgg tgatgtgaaa accgctagcc acaaactgtt tgcacaggga atcaaagccg
     5461 tgttagccaa aggtggacat tttgaatggc tgggggaaac ggtaagagat tatctgctga
     5521 ctgcaaatga aatttatgcc tttagtcacg cccgacagca aagtgtgaat acccatggca
     5581 caggttgcac ctatgcttca gcggttggag cgatgttggc aaccggcttt gatttagctg
     5641 atgccgtcac tgttgccacc gcttatttgc aaaaaggctt atcggaaaaa caaggcagag
     5701 ggcaaactgc tttaagttca ctttgccaca ccggctaccc tgatgatatc gctttcttcc
     5761 cacaaaccga gctgatttct gcccctctta aattgccgaa agagcctttt gctccaacgg
     5821 aatatcaact tgggctttac cctgttgtag atagcgttaa atggcttgaa cgcttaattc
     5881 ttgtaggggt aaaaaccttg caaattagaa tcaaaaatcg accgcttgca gagattgagc
     5941 aagaaattgc ccattcggtc gcactggcga aacagcacaa tgtgcgtttg tttgtaaatg
     6001 attactggca gttagccatg aagtatcagg cttacggcgt gcatttaggg caggaggatt
     6061 tagccaccgc cgatttaaat gcaattcagc aatctgggtt acggcttggt gtttcaaccc
     6121 actgctactt tgaaataatg cgggcattgg cggtgaaacc gtcttatatc gcttttggcc
     6181 acgttttccc tactcaaacc aaagtaatgc cgtctcaacc acaaggctta acaaatttag
     6241 ccaaatatgt tgctctcgtt gcaccgctta acattccaac tgtggcgatt ggtggaatta
     6301 atgagcaaag cattgaaaat gtaatgcata ccggtgtcgg cagtgccgcg gtggtaagtg
     6361 ccgttaccca agcaaaagat tggcaacaag cggtcaaaaa cttagcaaaa tttgcaaatg
     6421 gaggccgtaa tgaatagaac tcttagtacg ctaaacagtg gtttgatttg ggcgggagcg
     6481 ggcattagtg ccagtgcaat cgtggttggc acttggattg ccccacttgg ctggcaacaa
     6541 ggcttgctgg cgatagtgct agggcattta ttaggcggca ttttgttttt tgctgccggc
     6601 ttaattgggg cgaaaaccgg caaaaatgcg atgcaaacgg tgcaaatttc ctttggcaga
     6661 ggctcggtgt ttttctccct tgccaatgtg ctacagcttg ttggttggac agccattatg
     6721 atctatacag gggcagagat cagtaatgcc cttagccttg ccttatggga atattcggct
     6781 ttctcgcttt gggcaatcgt gcttgggttg ctgattgtgc tatggttatt taccggctct
     6841 aatcaggtcg gaaaattcaa gttagtgaca ttgatagcga tgtttttgct caccttatgg
     6901 ctaagcatta aggtattgaa tgggcaggaa aattttcctg tttcgggtga aatgccgttt
     6961 agcaccgcag tggaattagc aactattatg cctctttcgt ggctaccttt ggtatcagac
     7021 tataccgcta aagcgaaaaa gccttttgcc gcgacccttt cggcgaccat aggctatttg
     7081 atcaccagtg cgtggatgta tgcgttaggt ctgggtatgg tgctatttac cgggcaaacc
     7141 gaaattgccc ctatgttact aatgacagga atgagcctta tcggcattat ggtgatgatt
     7201 ctttcgactg tgactaccac gtttcttgat gcctattccg ccggtgtcag tgccggcaat
     7261 atcacggcaa aattcaaaga aaccccaacc gccattctag tcacaatcat cggcacgcta
     7321 ctggcaatca gtttaccggt tacccaatat gaaaatttcc tgctgctgat aggctcggta
     7381 ttcgccccga tgattgccgt gcaaattgcg gatttctttg tgttaaaacg ccaccaagca
     7441 cagcctaatg ttgattgggt tgctgccgga ttatggcttg tcggcttcgt gctataccac
     7501 cttctctctt accaccaagt gcatttacta ctcggcttaa ccattccagt gatgttagtg
     7561 atttttctca gcaccatttt tgtgaggagg ttcacaaaat agaaagataa gcggttcaat
     7621 tggagtgaaa atttgctaaa attgagtcgc ttgttttaaa caatgactgg gtagtaacac
     7681 cacaagctca acttgcctac cacaccatta acggtaaagc cgatgaggaa cggttaaatc
     7741 ttttagttgc ccgtgccggc gtaagagtag caaaaggctt tgccttgaat aatggttgga
     7801 atctgcaacc ttatgcggaa gtaaacggca ttgctgaaaa aggccaatag tacgaaagtg
     7861 caagtaaacc aatatcagtt tggagttgcc gaaaacaagg gcagagtgca aggttcactt
     7921 ggcttgagtg caggaaacgg taatcaccgt ttaggtttag aggcatcagt tgcttcaggt
     7981 aagaaactga aacaaccatt taatgtatta gtaaattatc gttatcaatg gtaatttaag
     8041 agggcaggtg aaaacctgcc cttaaattca ataattaatc tatcttccca caatttaaac
     8101 agtaaagata catctgtttc ggatcgttaa aacgtgaaag agtctctagc tgttgttgcg
     8161 gttgcttcaa cagcggtaaa tcaagccaat ttgccacgct aaattgtaat tgagctttga
     8221 aatcacgggc aagcgtgcca aataagctgt catcttgctc cgcaaaccat tgtaagccga
     8281 actgttcgac tttaggttgg ttttccgctt cacgtttttg gttgatcaat tcagataacg
     8341 cattatatgc cacattaaaa ttgcccaact catcaaccaa tccgtgtttt aacgcatcag
     8401 ttcccagcca cacttgccct tgagccactt tatctaccac ctcttttggc attttcctgc
     8461 cacgagaaac cagctctaaa aaacggtcgt agccgttttc aatcccaatt tgcagcactt
     8521 ctgcctgctc ttgcggtagg ctttttaaac cggcttgttg tgctagggca gaagtcgcta
     8581 tgccgtcttc gctcacaccg agatttttag cggttttttc aaaagttact gctaaaccga
     8641 aaataccgat agagccggta agcgtattcg ggctagcaat aattttatcg ctggtagccg
     8701 caatccaata accgcccgat gctgccattc cgcccattga agcaaccacc ggtttgccgg
     8761 cttgttgaaa ggcttccact tcttggcgaa tcagttcaga cgccacagca ctgccgccgg
     8821 ggctgttaat gcgtagaatt aagccttcca catttttgtc atctcgagct tgttgcagta
     8881 attttaccag cgtctcgctg cccacattca tttcgtcact ttcaccgcca gcaatcgccc
     8941 cttccacatt cactaccgca attttcggag cattcacttc tgcaaagcgg tcgtttagtt
     9001 cagtcatata atctaaaaat tcaatctggt tataactgcc ttcgctgttt ttgccaaact
     9061 gtgcaatcag tttatcccga ctttcttggc tggacactaa ctgactaacc catttttgat
     9121 ttaatgccag ttgagcatca tctcctttag cttgtttata tttttcaatg taattggcag
     9181 gcgataaatc cagtgcttgc ggttcaatgt tgcggttttg agctagtgtt gccacagttt
     9241 gttgccaagt gccgtttaac cagcctcggg cattttgttt cgcctcctca gacatatcat
     9301 cacgcataaa cggctcaacc gccgatttat aagtaccgac acggaaaata tgcggttcag
     9361 cctcaatttt atcgagcaag gttttgaaat aagtgttgga ataatttaag ccttttaaat
     9421 ccaccgcacc gactttattg agataaattt catcagcaaa ggaagcaaga taatattgtt
     9481 tttgcgagta gtcttcgccc actgcaatca ccggcttgcc cgattgtttg aagttgttga
     9541 tttcattgcc gataaaatcc aatgagctga aatcagcact ttgtagcttt tgcagatcta
     9601 acaccaagcc ggtaattttc gggtcatttt tagcgtggct aatcgcttgc accacatcaa
     9661 aagtcgagat tttaaacggc tcggaactac ctaattccga ttgcaccaag cggtagaaat
     9721 cagtgaattc ttcccgatta tctgctaaat aaccatctaa atttaaacgt aacgcccctt
     9781 gattgaacac cggcttttgc gtgctgccag aagagctgat aaatgcgacc accggcacta
     9841 atagcaaaat aaacagaata aaaaagagat taatgacaca ctctctaata caacggaaga
     9901 ttcggtaaaa tgcttttaaa atcgttaaca tcggaaattc ctaaaaataa actcagtcgg
     9961 cacagtataa agcaatcgct aaatgaagaa aatatgctat tcttgaacgc aaaaaattaa
    10021 caaaggaacg cttatgcaaa tcttggattt attacaccat cgccgttcaa ataaaaaatt
    10081 tggcgataaa gccccgaatg cagaacaact ggaacaaatt ctaaaagccg gcttgcgagt
    10141 gccggatcac gggcggttaa agccttatcg ctttgtggtg attgaaaaaa gcggtatgcc
    10201 acagtttggt gaatgcttaa agtctgcggt agcagaattt gatatgggcg aggaacgctt
    10261 aaaaaaagcg gaaaaattag ctaatcaagc tccaatgatt atcggcgtgg tagcaacatt
    10321 agacgacagc atcgccaaag tgccaagttg ggaacaaatg attaccgcag gctgtgcaac
    10381 ttatgcgatt cagttagcgg caaatgcaca gggctttgat acggtttgga tcaccaataa
    10441 atggattaac ggctctgctc ttcgctccgc ttttggttgc caagaatctg ataaaatcat
    10501 tgccttaatt atgcttggct caccggcaga gggcgagcaa attgcattag cccctgaaag
    10561 tgaaagttta gaggggtttg tacgttatct taagtaagca ggttaacaga taaaagttag
    10621 taataagggc gaaaaatatt tcgcccttgc ttttatctgt tttcgcctta cttcttccag
    10681 ccttttaacg catcggcaaa ggcattgtta ccaaaagcgt tgcgattgtt gctttgcaag
    10741 cggtcatttt tctgcgtatt tttgcaaatt tctgctgaat ttcgaccgct tgttggctct
    10801 tttttatcgg ttggtttgtc gtctaaacgc atcgtaaggg caatacgttt gcgggcagcg
    10861 tccacctcaa gcactttgac tttcaccaca tcaccagctt tcactaccgt gtgcggatct
    10921 tcaacaaaag agtttgagag cattgaaata tgcaccaagc catcttggtg tacgccaata
    10981 tcgacaaaag ccccaaagtt tgccacattg gtcactgtgc cctccaaaat cataccggct
    11041 ttgaggtcgg taatttcttc cacgccgtcc ataaacacgg cggttttaaa ctctccacga
    11101 gggtcacgcc ccggtttttc taactctttg aaaatatcgt tcaccgttgg taaaccaaac
    11161 tgctcatcca caaaatcttt ggcgttgagc gagtgaattt tgctgttgtt acccattaat
    11221 tctgcaagtg ttgaggtagt tgcctgtaag attttttcta ccaccgggta agcttccggg
    11281 tgaacgcttg aggcatcaag ggcatttttc ccaccgataa ttcgcataaa accggcacac
    11341 tgttcaaagg ctttcggccc taaacgaggc acttttttca gctctgagcg gctggtaaaa
    11401 cggccgtttt cgtcacggaa tgccacgata ttttgtgcca atgttttggt cattcccgcc
    11461 acccgagcca gcaacggagc ggaggctgta ttcagatcca cgcccactgc gtttacacaa
    11521 tcttctacta ccgcatcgag tttacgggca agttgggatt ggtttacatc gtgttgatac
    11581 tgcccaacac caatcgcttt tggttcgatt ttcaccaact cggcaagtgg atcttgcaaa
    11641 cggcgggcaa tcgaaaccgc tccccgtaat gaaacgtcta aatttggaaa ctcgttagcc
    11701 gcaaattcag aggcagaata gaccgatgcc ccagcctcac tcaccaccac cgtttgcggt
    11761 ttattctctt tgatttcttt aatcaccgct ttggcaaaac gttcggtttc acgagaggcc
    11821 gtaccgttac caatcgcaat cagttccaca ttgtgttgtt tgattaagct gaaaatcgca
    11881 agctgtgcct ccgcctctcg cccagtgtga gggtaaattg tggcggtatc cagcaattta
    11941 ccggtgttat ccaccaccgc cactttcacg ccggtacgca agcccgggtc tagccccatt
    12001 gtatttctcg caccggcagg ggctgccatt aataatgccg agagattgcg ggcaaacaca
    12061 tcaatcgcct cttcttcagc tttttcacac agggttgcca ttaattcggt ttctaaatgc
    12121 agagctgctt tgattttcca cgtccaagca atcacttgct cacgccattt atctgctggt
    12181 tgattattaa aaatcacgcc caaatgctca cgaataattt cttcacaatg gctggatttt
    12241 gtgccttctt ctgcagtcgg atcggcattt aatgaaagtg ataacacccc ttcatttcgc
    12301 ccacggaaca tcgccaaagc acggtgggaa ggcacgctgt taaacggctc gctatgagca
    12361 aaataatcac ggaatttctc gccctcttcc tctttgccgt caatcacttt cgattccaac
    12421 gtggcgtaag cggtcaaata ttggcgaagt tttgcaagta gctcagcatc ttcgctaaaa
    12481 cgctccatta aaatatatct tgccccgtct aatgcggcct tggtatccgc aacgcctttt
    12541 tccgcatcaa caaagtttgc cgctaaggtt tcaggatctt gtttcggatc attccataaa
    12601 ctgtccgcca atggctctaa ccctgcttca atcgcaattt gccctctggt gcgacgtttt
    12661 ggtttatacg gcaaatagag atcttccagc tcggtcttgc tttcactgct tagaattttg
    12721 gcttttaatt catcggttaa tttgccttgt tcttcaatcg acttcaaaat ggtttggcgg
    12781 cgttcgtcca tttcacgcaa ataaattaag cgggtttcaa aatggcgaag ttgggtgtcg
    12841 tctagcccgc cggtcacttc tttacggtaa cgagcaataa atggaatggt attgccctca
    12901 cctaatagcg tgatggctgc aagaatttgg tgtgagccaa cgttgagttc gccggcaata
    12961 atttggctga tttttagatt taagtcagtc attagttttc cttcaataaa tttgctcgag
    13021 gtttatccaa tttctcaagc tcggtcaatg tttcggcaat tttttgcaga ttcggctctt
    13081 ttttcgcaca taacaccata ttttctaagc tatccgcttg gtgatagtag ggtgctttgc
    13141 ttttgacagc ctgctcaaat tgctgataag cctgttgaaa ttgaccctgt ttacataaaa
    13201 aagtgccgta attattcagc acatcagggc ggttttgact caatttcagt gccgtttggt
    13261 aggctttttc ggcattttca gcatcacctg tttgttggta ataataggca agcaccgaat
    13321 aagggaggta atctttttca tcgtgagcca aggctttatc aatattctgc ttagcttttg
    13381 ggaaatcatt ttgctccaga taagctaaag ccaaattaat acgggctttt accgcttccg
    13441 agcggttaaa ttcgacttca gaggaagaag ggggaagaga agaacaagcc gctaataaaa
    13501 aaatcagaat acaagcggtc atttttggaa aaaattttgc aaacataacg ttctcctaca
    13561 acaaagggct taattttact gttccatcct cgctaagact agcgattttt tgcgaagaag
    13621 aaaaattttt cgttttcatt tttcgacgca gatcgcaaaa ataataatgg ggtgttgt
//
LOCUS       DANMGB010000059        13610 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.059, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000059 DANMGB010000000
VERSION     DANMGB010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13610
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.059"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            33..587
                     /gene="srlA"
                     /locus_tag="PXG19_001277"
     CDS             33..587
                     /gene="srlA"
                     /locus_tag="PXG19_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL6066581.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            618..1619
                     /locus_tag="PXG19_001278"
     CDS             618..1619
                     /locus_tag="PXG19_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL6066582.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            1664..2062
                     /gene="srlB"
                     /locus_tag="PXG19_001279"
                     /gene_synonym="gutB"
     CDS             1664..2062
                     /gene="srlB"
                     /locus_tag="PXG19_001279"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL6066583.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            2110..2898
                     /gene="srlD"
                     /locus_tag="PXG19_001280"
     CDS             2110..2898
                     /gene="srlD"
                     /locus_tag="PXG19_001280"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL6066584.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            3067..3447
                     /gene="gutM"
                     /locus_tag="PXG19_001281"
     CDS             3067..3447
                     /gene="gutM"
                     /locus_tag="PXG19_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL6066585.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            3510..4157
                     /gene="hxpB"
                     /locus_tag="PXG19_001282"
     CDS             3510..4157
                     /gene="hxpB"
                     /locus_tag="PXG19_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL6066586.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            4200..4997
                     /locus_tag="PXG19_001283"
     CDS             4200..4997
                     /locus_tag="PXG19_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL6066587.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            5008..5943
                     /locus_tag="PXG19_001284"
     CDS             5008..5943
                     /locus_tag="PXG19_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL6066588.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(5987..6537)
                     /locus_tag="PXG19_001285"
                     /pseudo
     CDS             complement(5987..6537)
                     /locus_tag="PXG19_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            6839..8698
                     /locus_tag="PXG19_001286"
     CDS             6839..8698
                     /locus_tag="PXG19_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL6066589.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            8802..9941
                     /locus_tag="PXG19_001287"
     CDS             8802..9941
                     /locus_tag="PXG19_001287"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL6066590.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            9953..10468
                     /locus_tag="PXG19_001288"
     CDS             9953..10468
                     /locus_tag="PXG19_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL6066591.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            10608..12473
                     /locus_tag="PXG19_001289"
     CDS             10608..12473
                     /locus_tag="PXG19_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL6066592.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(12763..13014)
                     /locus_tag="PXG19_001290"
     CDS             complement(12763..13014)
                     /locus_tag="PXG19_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066593.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(13026..13508)
                     /locus_tag="PXG19_001291"
     CDS             complement(13026..13508)
                     /locus_tag="PXG19_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6066594.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
BASE COUNT         3862 a         2655 c         3102 g         3991 t
ORIGIN      
        1 aaaatatttt attttgaaaa acggagatcg gtatgattga agcaattaca cacggagcag
       61 aatggtttat cggcctgttc caaaaaggcg gtgaaacctt agtcggtatg ataaacggta
      121 ttttgccact cttaatttca ttattggttg taatgaatgc cctgattaaa tttgtagggc
      181 aagatcggat tgaacgactt gctcaacgta gtgccggaaa ccctatttca cgttatttga
      241 tcttaccggt gatcggcact ttcgttttct gtaacccgat gacattaagc ttagggcgtt
      301 tcttaccgga gcgttacaaa ccaagctact acgccgcagc ctcttatagt tgccactcta
      361 tgaacggctt attccctcac atcaacccgg gtgaattatt cgtttattta ggtattgcca
      421 gcggtttaac caccttaggc ttaccacttg ggcctttagc catcagttat ttattagtcg
      481 gtatgtttac caatttcttc cgtggctgga taacagactt caccaccgca ttctttgaaa
      541 aacgaatggg gatcacctta gatagagaag tacatttatc ccactaacca agtaactgaa
      601 atacagagga atagattatg agcaacaaag cgatttacat tgaaaaaggc aacggtggtt
      661 ggggtggtcc attaacatta cctgttgtgg aaggcaaaaa agtgctttat atgaccggcg
      721 gcactcgccc tgcgattgtt aataaattgg tggaattaac cggctgggaa gcggttgatg
      781 gttttaaaga aggcgaaccg ccggcagaag aaatcgggat tgcgattatt gattgcggtg
      841 gggtattacg ctgtgggctt tacccaaaac gccgtattcc aaccattaac attcactcca
      901 ccggtaaatc cggcccttta gcagaattta ttgtggaaga tatttatgtt tcagcggtga
      961 aagaaaacaa tattcgctta attgatgccg atggaagtgt gcctgtggca acagagcaag
     1021 caaaaccaac ttcatcaacg acagcaacgg caaaagagta tgactccagc aaaaaaatca
     1081 ccgaacaaag tgatggttta ttagcaaaaa tcggtatggg aatgggatcg gtggcggcgt
     1141 tattcttcca agccggacga gacactattg atacggtgct taaaaccatt ttaccgttta
     1201 tggcatttgt ttctgcgtta atcgggatca tcattgcgtc aggtttaggt gatgtgattg
     1261 cccacggctt gacccctctg gcaaacagcc caatcggttt agttacactg gcgttgattt
     1321 gttccttccc tctcctttcc ccattcttag ggccgggagc cgtgattgca caagttatcg
     1381 gcgtgttagt cggtacgcaa atcggtttag gcaatattcc gccacattta gcactgccgg
     1441 cactctttgc tattaatgct caagccgctt gtgattttat tcctgtgggt ctttcaatgg
     1501 cggaagcaaa acaagatacc gtacgggtgg gtgtaccgtc agtattagtc agccgttttt
     1561 taaccggtgc accgaccgtg ctgattgcgt gggcagtttc cgcattcatc taccaataat
     1621 taaccacgat acaagcggtg gaatttgaaa aattttttgc aaaatgcacc gcttgtcaaa
     1681 acgagagaac atttatatga cgattattta tcaaacgacc tttaccaaaa tcgggaattt
     1741 tgctcaggaa tcattaacag acgatatgtt aatcactttt aaacaaggcg caccggcaga
     1801 tttacaagat tactgcttca ttcataatcc atctgaatta agtagccctt tagaagtagg
     1861 cgatatcgct gaatttgatg gcgtagctta tccgattacg gcagttggta gcgttgcatc
     1921 tgaaaactta tccgccctcg gacacattac cttccgtttt gacggggcaa atgatgcgga
     1981 atttccggga agcgttcacg ttatcggaac accgccgcaa ggcttaacag agaactcaac
     2041 cttgattatc aagcgtgatt aatgacggat taaaaataat ttcaaattga aaatttagag
     2101 gaatacatta tgaacaatga aaaaaaagtt gctatcgttg ttggcggcgg tcaaacactt
     2161 ggagcttttt tatctgaagg cttggcagat gccggttatc gtgtggtggt tgctgactta
     2221 aacggcgaaa atgcacaaaa agtggcagcc gacattaatg ccaaacaagg cgaaggaaat
     2281 gcgattgggg tgcaagtcga tgcggctgat gaaccaagcg ttgaagcact agctaaagca
     2341 acagataccg tattcgggcg tgccgatgta ttggtttaca gtgcaggcac agcgaaagca
     2401 tcgcctattt gggatttcaa cttaaacgat tttgatttgt cggtaaaagt gaatttaacc
     2461 ggttatttct taaccgcaaa acacttctcc cgcttaatga ttcgtgacgg tattaaaggg
     2521 cgtatcattc aaattaattc taaatcgggt aaagtaggga gtaagtataa ttccggttat
     2581 agtgcagcga aatttggtgg tgttggttta acacaatcgt tagcattaga cttggcagat
     2641 aaaggcatta ccgtgcattc attaatgtta ggcaatttat tgaaatcgcc gatgttccaa
     2701 tcgttaattc cgcaatatgc ggcaaaactc ggcattccgg aaagcgaagt agagcaagtt
     2761 tatattgata aagtgccttt aaaacgtggc tgtgattatc aagatgtgtt gaatgtctta
     2821 aaattctatg ccggcgaaga ggcagcttat tgcacaggac agtctattaa tattaccggt
     2881 ggtcaggtaa tgttctaagc aaacaagcgg tcaaatttgt cgattttttt acaacaattt
     2941 gcaaaaaatg actaaaataa accgcttgtt aattcgccac accggttaat atgccacagg
     3001 ggaaagcgta ttgttttgaa atcgcaggta cgtttaggct ctgtggcttt ttattaagga
     3061 gcaatgatgg attcaattac acttctgatt atattggcaa tgataatgtg gctgttacaa
     3121 gccgttttgg gttggcttca aattaaagcc tttaaccaag cctttatgga aatcagtaag
     3181 aaaggcaaag taacggttgg gcgtaatagt ggtcgtttta atcctaaatc ggttattgtg
     3241 ttggcgtttg atgatgagaa aaaagtggta gatagccttt gtatgaaagg attttccgtc
     3301 tttgccagac cgcagaaatt agcgtctgtg attggtttgt ctcttgatca aattgtgccg
     3361 gaaaaaatct ttccaagcga taaacgttca caatttgcct taaaagtggc gatatcttcc
     3421 ggatatagtt gctcagatca aaaataatgc gattttttat ttcattttga atattttttt
     3481 agttaaaaat gagataatgg agaataaata tgcagatcaa tagtgtcatc tttgatatgg
     3541 acggggtaat gattgattca gaaccccaat gggcagaggc tcaaattgca gtattagccg
     3601 acttaggtat taatatcacc gagcaagatt gcgaacaact caccagaggt aagcggattg
     3661 atgagttgag cgacacttgg attaaaaaat ttcagttatc tgtttccaac caagcattaa
     3721 gtgaagccat tttggcacac ggttgtgctg cgattgaaca acacggcaaa gcattaacgg
     3781 gtttatatga attattggat ttcttaaaat ctaatcagat caagttagcc gttgcaacct
     3841 catcgccgcc ggtggtgatt aaagcggtgt ttgatcgctt aaaactgtgg gattatttcc
     3901 cgattcgatg cagtgcaatg gacgaagaat atggcaagcc acaccctgcg gtctatttga
     3961 gtgcagtgaa aaaattaggc attgaaaaac aagagtgtat tgttattgag gacagtgtaa
     4021 ccggcttaat tgccgccaaa gccgctaatt taactacatt tttggtgaat accgattatc
     4081 aaaatgaaaa attttcaatt gccgataaaa gaatggcatc gctactagat gtcattgaaa
     4141 aattaaaaca gcattagcac agattagctc gctccaatct ttgctaaatt ggaggaacaa
     4201 tgaaaccttt tgaaagaaga cagcaaattt tagcctattt agctcagcac ggtagaaccg
     4261 aagtggacgt gctggcagac tattttaagc taactggtgc aaccattcgt aaagatttaa
     4321 cttcacttga agaagataag aaagtcttgc gtacttatgg cagtgtagtc ttaattgatg
     4381 aagaaattct tgaacgggaa gagaaaatca ataaagagga caaagacgat aaaccgcttg
     4441 cacagaaaac cggcattaat cttcaacaaa agcaagctat cgggcaaaaa gctgcagagt
     4501 taattaatga gggaaactct attatttttg atgcaggcag cacagtgtta caaatgattc
     4561 cccatttaaa agcatttgat aacctctctt taatgacaaa tagtttaact attttcaatg
     4621 agattttgaa actcaataaa tcctataact tactgatttc cggtggtaca tttcgtgaga
     4681 aatcagcttc atttcacggt tattttgctg aatccgcttt tattggttca aattttgaca
     4741 tactctttat tggcacagac ggactagatt tagacgttgg attaacgact ttcaatgaag
     4801 tatataaagt cagttcgcta atgtgtgatg cggcaaataa aatcgtctta cttgccgact
     4861 ccagtaagtt tggacgtaaa agtccgaata ttgtgtgtgg gttagaaaaa attcatacta
     4921 tcattaccga tgaaggatta tctcaagaaa tgagagaaca gattaaagcg aaagggattg
     4981 agctgttagt tgtataaggg cgtaaaaatg aatcatttag acagtgcaaa agaaacgtta
     5041 aacctctatg ctcagcagat tatcacgcta aaccatcgac tttctgaaga atttaatgag
     5101 gtggtaaata tgatactcgc ttgtcaaggg cgagtggttg ttggcggtat tggaaaatcg
     5161 gggctggttg gcaaaaaaat ggtggcaact tttgcctcca ccggtacacc gagctttttc
     5221 ttgcacccga cagaggcttt tcacggcgat ttgggaatgc tgaaaccgat tgatatggta
     5281 attctgattt ctaacagtgg tgaaactgat gatgtgaata aactgattcc aagcctgaaa
     5341 aatttcggca ataaaattat tgcgatgaca ggtaatcctt actccacact tgggcgaaat
     5401 gccgatgtga ttttaaatat tggtgtagag cgtgaagcct gcctgaataa tctagctcca
     5461 accagctcta ctttggtaac gatggcttta ggcgatgcgt tagccattgc gctaatgaaa
     5521 gcccgtgatt tccgccctga agattttgcc cgctaccacc cgggtggcag tcttggtcgt
     5581 aaattattga acagagtgcg agatgtgatg gtgcgtaaag tgccaaccgc cagcttagac
     5641 accaccttta ccgaatgttt atctgtgatg aacgaagggc gtatgggggt ggcggtaatt
     5701 atgcaagacg ataaattgga aggcattatt accgatggtg atatccgccg cacattagcg
     5761 aaattcgggg cggagagcct aaataaaacc gctgacgaaa ttatgacccg taatccaaaa
     5821 accattaacg ataccgaatt tttagccaaa gccgaagatt taatgaaaga gctgaaaatt
     5881 cactcattaa ttgcagtgaa tgatgagggt aaagtaacgg gattgatgga gttctctagt
     5941 taatttatag atgtaacgat ggcgcaagcg tttacgcttg tgccgttcac tgacatatat
     6001 caatatctaa taaaacaggt aagttgttag cataatttct tgcactgcta tatttccatt
     6061 caaatgcctc gcatacaaaa ccgcttacga tagggttgtt gtgaatatgg tttagctttt
     6121 catcaaaaaa tttctgagaa tagattgtta tcggttggtt atgatgttgc caaagttggt
     6181 attgcttgac attatttcgt tgtttagctg cccgagtaaa catccataat aaccattctt
     6241 ttctactttc ttggggattt gttttaattt gctgaatcaa catttagatg taaatgtttt
     6301 aaaatctctt attaaatctg acgggttttg gtcttttgct tgaaataata aatgaatatg
     6361 gcttggcata atgcagtagc catataaaat catccctttt tgttttcgac aataattcaa
     6421 tgattggata atggtttgaa aataatcttc tcgaataaat agatcaatcc aataaactgt
     6481 tgcaaaacta acaaaatagg ctccgctctt ctcataaaac ttatattttc tactcattat
     6541 gaacctctaa agtgcagttt atgctgatag taatataggt gaacagttag ggttagcaat
     6601 tcattttatt ttttcgatgt agatcgcaaa aatagaatta tgcttggcac aagcgaggac
     6661 gcttacgcca tctttactcc aaaaatgtga gatagatcac attttcaaat ctgcccaaaa
     6721 aaatttaatg tgatctactt cacatttctg agagaaacat ttttgtaact tttgaaagtg
     6781 gtgctaattt aagcacgatt ttttcaaccc taattttctc tccttttttg aggtttctat
     6841 gtctaattta aaagtgaaag tccaaggttt tgggcgtttc ttatcgaata tggtgatgcc
     6901 gaatatcggt gcctttattg cgtggggctt tatcaccgcc ctgtttattc caaccggttg
     6961 gttgccgaac gagacttttg ctaaactggt cggtccgatg attacttact tgctgccact
     7021 gttaatcggt tacagcggtg gtaaattagt cggtggtgag cgtggtgcgg ttgtaggtgc
     7081 gattactaca atgggtatta tcgtgggttc tgaaatcccg atgttcttag gtgcgatgat
     7141 tgtaggtcca ttaggcggct gggcgatcaa aaccttcgat aaagcgattg acggcaaagt
     7201 aaaaagcggt tttgagatgt tggtaaacaa cttctcggtc gggatcatcg gtatgatttt
     7261 ggcaatgctt tcatttgctt tcattggagg tatcgtcacc caaatctctg cggcattagg
     7321 tgcaggtgtg ggggcgttgg ttgaagctgg tcttctgcca gtaacctcta tcatcgttga
     7381 accggcgaaa atcctattct taaacaatgc gatcaatcac ggtgtgttca cgccattggg
     7441 tacagcacaa gcacaagaag tgggcaaatc tattctgttc ttgattgaag cgaacccggg
     7501 tccgggcttt ggtatcttgc ttgcctatat gttctttggt cgtggcacag caaaacaaac
     7561 cgctggtagt gcgtcaatca ttcacttctt aggcggtatt cacgaaattt atttcccgta
     7621 tgtgttaatg agcccacgct taattcttgc agtgattgca ggcggtgcaa ccggcgtttt
     7681 aaccaactca ttattaggtg gcggtttaat cgcaccggct tccccgggtt ctatttttgc
     7741 gattttagca atgaccgcac cgggtgctca ctttgcagtt gttgcctccg tgattctttc
     7801 ttgtgccgtg acttttgcga ttgcgtcaat cttactcaaa acccaaaaag gtgaagcctc
     7861 attggaagat gcacaagcac aaactcaagc gatgaaagca gaaagcaaag gcgtagtaaa
     7921 tggtaacatc aacaaaatct atgtagcgtg tgatgccggt atgggttcaa gtgcgatggg
     7981 tgcgagtatg ttacgcaaaa aagtgcaagc ggcaggttta aacattgaag tacaaaactt
     8041 agcgatcaac gacttaccgc aagacgcaca actggtgatt acccacaaag acttaaccgc
     8101 tcgtgcaaca caacgtgtgg caacggctca acacttatcg ctcactaact tcttagacag
     8161 tgcgttctat gacagcttag tggcaaaact ggctaaccac cagccacaac aagcggtgca
     8221 aaatacacaa aattttgcaa acccggtgga agaacctcaa gccgaagggt taaaattgca
     8281 agcagcccaa gtctttttag gcttacaagc taacagtaaa gaagaagcga tccgctttgc
     8341 cggtgagcag ttagttaaag cgggctttgt tcaaccaagc tatgtagatg caatgttcgc
     8401 ccgtgagcaa atggtttcaa cttacttagg cgaaggctta gctgtgccac acggtacatc
     8461 tgatgccaaa gacagcgtac tgaaaaccgg tatcgtggtc tgccaatacc cgaacggcgt
     8521 tcgcttcacc gatgaagaag acggcgtggc gaaactggtg gtcggtattg cagcaaaagg
     8581 caacgaccat atccaaattt taagtgcaat taccaacgca ctggacgatg aacaagcaat
     8641 gaaaacactg acctcaacaa atgacgtgga aaaagtgtta gcattattat ctaaataatc
     8701 accctgttgt gtaggggcgg gtcctgtgcc cgcccattat cctacaaaat ttagggcggg
     8761 cacaggaccc gcccctacgt tttatagagg aacaatcatc aatgaacgca ctccattttg
     8821 gtgccggtaa tatcgggcgt ggctttatcg gcaaattgct tgctgatgct cgcattttcg
     8881 tgacttttgc cgatattaac caaactcaaa tcgaccaaat caaccaaaac aagcaatacg
     8941 gcgtgaaaat cgtgggcgat gacagccgtg tggaaattgt caaaaacatt gcggcaatta
     9001 actcgaaaga cgaaaatgcc gtgattgagc aagtgaaaaa caccgattta attaccaccg
     9061 cagtcggccc gaatgtgctt ggctttattg ccccactgtt cgccaaagcg ttagtggctc
     9121 gtgtggaaag tggcaacacc caaccgctga acattatcgc ctgtgaaaat atggtgcgtg
     9181 gcacaacttt ctttaaaggt aaaatttttg agcatttaac tgccgagcag caagcagaaa
     9241 ttgaaaaagt ggttggtttt gttgatagtg cggtggacag aattgtacca cctgccgagc
     9301 cgaaccctgc tgatccgttg gaagtcacgg tggaagagtt cagcgagtgg attgtggatc
     9361 aaacccagtt caaaggtgac attccaaaca tcaaaggaat ggaattaacc gataacctga
     9421 tggcgtttgt ggaacgcaaa ctgttcaccc tgaacaccgg gcatttaatc tgtgcctact
     9481 tgggcaaaca agcgggcgtg aaatggatta aagaggcgat tgcgattgag gaaatcaaaa
     9541 ctcaggtgaa agccacaatg gaagagagcg gtgctgtgct gattaaacgt tacggcttcg
     9601 acccacaagc ccattcagcg tatatcgaaa aaatcctcaa acgttttgcc aacccgtact
     9661 taaacgatga cgtaaaccgt gtagggcgtg agccaatccg caaactgagc gaaaacgacc
     9721 gcttgatcaa accgttgcgt ggcacgttgg aatatggctt accgtatcaa aacttggtca
     9781 aaggcgtggt gatggcattg caatatcgca atgaggaaga cccacaagcg gtcgaacttg
     9841 ccgaatttat tgcaaatcac ggtgtggcgg cagcggtgga aaaatacacc ggtttaaccg
     9901 accaagcggt cattgctcaa gtggtggaat tatatcaata attcttgaca ctatgatgga
     9961 ttacatcgac aaactcagtg aggaaaccac cctgcgtggt ttccttagca ttgccaatca
    10021 acgctttgcc aaagcggttg aacagttgat tgaacgagtg tttcgcaaaa cggactttgc
    10081 gttaaaatcc gtggtggatt ccttgtttga acatcaagga ccgctggctg acattgaagt
    10141 acgtttaaaa gtgttgcttg ggttgggggt gatctcacct aaagtgtttg aagatatctc
    10201 gcttttcctt gaagtcaaac agcatttgaa tgaggaagaa gacgagttcg cattttctca
    10261 cccggcggta gtgaaatttg ccaaagattt gcaccatatt gattttttgc ctatcaatga
    10321 attgctgaat atgaaagcga gtgcagcgaa taaagattcg atgctctttc aaatgcagca
    10381 aatgcggttg gaaaaaatgg tacgttcaag cctgattttg gcggtaactg aaattgacga
    10441 acaactgaat gtggaaagcc cattgtaaaa atttcgtcaa aactaaccgc ttgtactgag
    10501 cattcacgcc gtacgtgatt gctttttcct ttctttttga tcttatcggc ttttttcttt
    10561 gcttaaagcg gtgtaatcta tccctaacta ttttggagga tatggttatg caatcgttgc
    10621 tctcttttgt gccggatttt cttaagcaag aactgttttg ggtaatggcg ttattggtat
    10681 ttgcgatttg gcaatttatc caaaacaagt tgcgtatgga cgtggttgcc ttaattgtaa
    10741 tgctgttttt tagcctgact aatattttat cagtcaaaga agtgttggca ggcttaagtg
    10801 acccaaacgt ggtgctgatt gcgttgctct ttattgtcgg agaaggtttg gtgcgaaccg
    10861 gcgtggcgaa ccaagtcagc gattggttga tgcgggtgtc gggagcgagc gaaaccaaag
    10921 tgctggtgct gctaatgctc tgtattgccg ggcttggatc ttttatgagt tccaccggca
    10981 ttgtggcgat tttcattccg gtggtgcttg ccatttgctc gggaatggga atttctcctc
    11041 gccggttaat gatgccgtta agtgttgccg gacttatcag cggtatgatg accttaattg
    11101 ccacaccacc caaccttgtt gctcattccg aattagtaaa atcaggtttt gaaggcttca
    11161 atttcttcag ttttactccg attggattaa ttattttagt gatgggcatc ggctatatgc
    11221 tgattgcccg ccgttggttg gataatggtg agcaaagcaa tactcacagt caggctcaaa
    11281 aattttcaat gtcgcagtta attgaagagt atcaacttaa agagcgagcc aaaatggtgc
    11341 tggtggaagc agattcagac tgtgtcggca aatctatcgg gcaactgaat ttacggattg
    11401 agcaagggct aaacatcatt gcaattcaac gcactaagcg gtttagaaaa attaccgtca
    11461 gtgcctcggt aaacgaaatt ttccagccga aagatatttt actgcttgat actgccctcg
    11521 atgatgaaac ttaccaacaa cgctgtgaac agctcaaact tcgcccgatt gagctaaaag
    11581 gcgaatactt ttcctcacaa tatcgctcgg tgggtatggc ggaaatttcg gttatgcctg
    11641 aagcagaatg tatcggtaaa actattcggg aactcaaatt ccgctcaaga taccatttaa
    11701 gcattgtcgg cttaaaacgt ggtgatgaaa tcatacaaga ggaactgctc gatacgccac
    11761 tcaaattcgg cgatatttta ttggtgatgg gcgtatggca acaaattcac cgtatggacg
    11821 acgatcatcg agatttcttc ttgcttagag atccggcaga aagtaaaaac gcccctccgg
    11881 cgttaagcca agcccctcac gctctgttct cagtgctgac tatggtgttg ctgatgatta
    11941 ccggcattgt gccaaacgtg atggcagcgt tgattgcctg cttaatgtta ggcaagttcc
    12001 gctgtgtgga tatgaaaagt gcttatgatt cgattcatat gccaagcatt gtgttgattg
    12061 tggggatgat gccgttttct attgccttac aaaaaaccgg tggtgtggat ttaaccgtta
    12121 ggcttctact tgatgcaatg caaggcttag atgtacattt tgttctaata gtattatttg
    12181 tagtaacagc gattatcagt gcttttattt ccaacacagc gactgcaatt ttggttatgc
    12241 cgatagccat tgcgattgct aaccaacttg gctactcacc ggcacctttt gtgatgacgg
    12301 tcgctgtttc agcctccgcc gcttttatga cgccggtttc ttcaccggta aatacgatgg
    12361 tattagcacc ggcaggctat aaatttattg atttcgttaa agttggtgtg ccgtttactg
    12421 tactggtgat gctggtgtcg gtgtttgtga ttccgatgtt atttccgctc taaacactcc
    12481 tctaaattac aagcggtcat ttttggtaat ctgacgttga cggtaaaatt gttgagtatg
    12541 tctggcaaca tagtgtgggg tactgatctt ttttgcatag agagaaagaa aaaaatttgg
    12601 gcggaaaaat aacggcgagg ctaggaaata caaggcttcg ccgtttttgt ttggggtgag
    12661 ttatgcaaaa aacgaaaatg agcaaaaata gaaaaaaatg ggctattttt acgttatttt
    12721 ttgcataggt ctgagcaggt ttaaacggat tttaaaacaa ttttaagcgc cctcatctcg
    12781 gctggctcgg ttgcgttgct ctaagctgtg aatgaggtcg tgtacacgtt gtttatcggc
    12841 acaggttagg ttggtgttat tatccaccgt gcagccggca atcaccgtgg cgttatcgcc
    12901 gttttgaatg atgacgttgc tgttattaaa cacctgtata ggctcttggc ttggctggct
    12961 gttgccggca gtgctattgt ctctgaataa tttgagaatg gcttgtttgt ccatattgtc
    13021 ccctgttatg ccaccagttt gagtaatccc accatttttt ctttttcgct tttttcttgc
    13081 gtgagaagct cgtagaaagc ccacaccatt tgggcttttc cggcaggctt catttcccgt
    13141 tgggtaattt ccagcacctc ttccaacgtt tctattgcct cttgtaactt agctttgata
    13201 acaactactt ccccttcttc tgtctgcggt tttgtggcat acacaggctg tggctctctt
    13261 gtgacattaa ggctttgcga gtgtcgctca cctgttaata ggtagcaagg ctcaacgtta
    13321 agtatttgtg acaaagccat aagttttgat ataggaggtt ctcttgtatc agcctcccac
    13381 gcttgtaatg tagatattgc aatacctcct agggcatcac aaacctcaga tctacttaat
    13441 tttgcatttt ttctgctctg ttctattcgg ttaccgaaac caataacctt tttacactct
    13501 attttcataa ctgtaaaaaa ataagttgag atttttagcc ttttacactc taaaaaccta
    13561 taaataaatc aataacttac agcaaactaa gtttatttgc tcataaatca
//
LOCUS       DANMGB010000060        13377 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.060, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000060 DANMGB010000000
VERSION     DANMGB010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13377
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.060"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            375..1019
                     /gene="rppH"
                     /locus_tag="PXG19_001292"
     CDS             375..1019
                     /gene="rppH"
                     /locus_tag="PXG19_001292"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL6066595.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            1021..1809
                     /locus_tag="PXG19_001293"
     CDS             1021..1809
                     /locus_tag="PXG19_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6066596.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            1817..2614
                     /gene="lgt"
                     /locus_tag="PXG19_001294"
     CDS             1817..2614
                     /gene="lgt"
                     /locus_tag="PXG19_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL6066597.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            2701..3369
                     /locus_tag="PXG19_001295"
     CDS             2701..3369
                     /locus_tag="PXG19_001295"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL6066598.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            3439..3699
                     /locus_tag="PXG19_001296"
     CDS             3439..3699
                     /locus_tag="PXG19_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6066599.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            3696..4028
                     /locus_tag="PXG19_001297"
     CDS             3696..4028
                     /locus_tag="PXG19_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL6066600.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSVTAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            4155..5186
                     /gene="trpS"
                     /locus_tag="PXG19_001298"
     CDS             4155..5186
                     /gene="trpS"
                     /locus_tag="PXG19_001298"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL6066601.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(5250..6005)
                     /locus_tag="PXG19_001299"
     CDS             complement(5250..6005)
                     /locus_tag="PXG19_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL6066602.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(6061..6588)
                     /gene="ppa"
                     /locus_tag="PXG19_001300"
     CDS             complement(6061..6588)
                     /gene="ppa"
                     /locus_tag="PXG19_001300"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL6066603.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            6805..6880
                     /locus_tag="PXG19_001301"
     tRNA            6805..6880
                     /locus_tag="PXG19_001301"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6838..6840,aa:Lys,seq:ttt)
     gene            6903..6978
                     /locus_tag="PXG19_001302"
     tRNA            6903..6978
                     /locus_tag="PXG19_001302"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6936..6938,aa:Lys,seq:ttt)
     gene            7000..7075
                     /locus_tag="PXG19_001303"
     tRNA            7000..7075
                     /locus_tag="PXG19_001303"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7033..7035,aa:Lys,seq:ttt)
     gene            7168..8202
                     /gene="mltG"
                     /locus_tag="PXG19_001304"
     CDS             7168..8202
                     /gene="mltG"
                     /locus_tag="PXG19_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL6066604.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            8213..8833
                     /locus_tag="PXG19_001305"
     CDS             8213..8833
                     /locus_tag="PXG19_001305"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL6066605.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            8833..9810
                     /locus_tag="PXG19_001306"
     CDS             8833..9810
                     /locus_tag="PXG19_001306"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL6066606.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            9941..10183
                     /locus_tag="PXG19_001307"
     CDS             9941..10183
                     /locus_tag="PXG19_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6066607.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            10176..10460
                     /locus_tag="PXG19_001308"
     CDS             10176..10460
                     /locus_tag="PXG19_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6066608.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            10465..11253
                     /locus_tag="PXG19_001309"
     CDS             10465..11253
                     /locus_tag="PXG19_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL6066609.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            11263..11784
                     /locus_tag="PXG19_001310"
     CDS             11263..11784
                     /locus_tag="PXG19_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL6066610.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            11859..12560
                     /gene="lpxH"
                     /locus_tag="PXG19_001311"
     CDS             11859..12560
                     /gene="lpxH"
                     /locus_tag="PXG19_001311"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL6066611.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            12557..13347
                     /locus_tag="PXG19_001312"
                     /pseudo
     CDS             12557..13347
                     /locus_tag="PXG19_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT         3973 a         2846 c         2782 g         3776 t
ORIGIN      
        1 ttgagttatt cacgcctaat ttgaaaaact atcacatctt tatccacaaa tggtggggat
       61 aactctgctt tatttgcgaa gcaaaaattg ccctgcttat tcattttaaa atttaaactt
      121 attttgacga gaaaaaacgc aacaacttga tctttatcca gatcattgct taagaaaaag
      181 atcgcatttt tagatctgat taattgctct gttttacaac gttccgcctg tttatcctca
      241 acttatacca cttatattca atagttatcc acaaagttat tcacaagcgg ttatatttta
      301 tggttttttt gcaaatcaac ccaaagtatg aaacaattct cccattctag aatttttatc
      361 aattaggtgg tcgagtgatc gatttcgatg gctaccgccc aaatgttgga atcgttatct
      421 gtaataagca cgggcaagtt ctgtgggcaa aacggtttgg tcaaaactct tggcaatttc
      481 cgcaaggtgg aattaatgag ggggaaaaca ttgaagcagc aatgtaccgt gagctttatg
      541 aagaggtcgg cttaagtaaa aaagatgtac gattgctttg ggcgtctaaa tattggctaa
      601 aatataaact gccaaaacgc ttggtacgta atgaaggctc tggtcctgtc tgtatcgggc
      661 aaaaacagcg ttggtttcta ctgcaattaa tcggtgatga aagcctgatt aatttgaaaa
      721 ccacgaaaaa tccggagttt gacggctggc gttgggtcag cttttggtat ccagtccgcc
      781 aagtggtctc ttttaaacga gatgtttatc gcaaagcgat gaaagagttt gcacaggttt
      841 tgcaaaacaa tattcaaaaa gcgactgacg ataaaaccgg tgagaaacca cgcattgagc
      901 gtggcgagac ttcgccccat acttataaaa aaacctctca ggattctgcc aaagcctata
      961 aacgagaagc tcgtaagcct tatcgtcctt ggcatcaaca taatcaaaaa ggaaaataag
     1021 atgactattt tattaagctg ccttttttta ggggtgtttg tcggcttttt agccggcttg
     1081 ttcggcattg gtggtgggtt aatcatcgtg ccgagtttgg tcttcctact gcccatggca
     1141 ggtgtaccgc cggaatatat aatgtccacc gcactcggca catcattttc aaccattatt
     1201 attaccgcct ttgcatcggc acaacgccat cataagttag gcaatgtcga tatccaaacc
     1261 agtaaatatt ttattccagc gttgatggtt tcggtttttc tatcgggctt ggtggtaagc
     1321 cgcctcgatc cgcaactgat gtctagaatt tttgcggtaa tggtacttta ccttgcaggt
     1381 aaaatgattt tttcaataaa aagagcaccg aaaaataaac cacttaccgt tcaaacgacg
     1441 ataatcggag gttcaatcat cggtgcgtta gccagtatgg cagggatcgc aggtggagcc
     1501 tttattgtac catttttaaa cgatcgaggc ttagaaatga aacgtgccat cggcacttcc
     1561 tcattttgcg gagcattttt aggtttatct ggcacaatca gctttattgt aagtggctgg
     1621 ggcttagaag gaatgcctga ttattctctc ggttatgttt atttaccggc tctgtttggt
     1681 attacggcaa cttcattttt cacctcaaaa atgggggcaa gtgccgccaa cgctctacct
     1741 gtgccgatgc tgaaaaaagc ctttgcggtg cttttggtct gtatcgccat caatatgttt
     1801 ttaaaataag gacactatga acgaacaatt tatccaattt ccacaaatta gcccgattgt
     1861 gtttgaaatc ggtccgattg ccctgcgttg gtatgggcta atgtatttag ccggctttgc
     1921 ctttgcctac tggctgggaa tgagacgggc gaaaaattcc aatggagttt ggacaaccga
     1981 gcaagtggat agcttagtct atacttgctt ctggggcgta gtattaggtg ggcgtatcgg
     2041 cgatgtgttc ttttatagct tcgaccgttt cttacaagat ccgctctacc tctttcgcat
     2101 ttgggaaggc ggaatgtcct ttcacggcgg tttaatcggc gtcattgtag caatgatttg
     2161 ggtttcctac cgccaaaaac gcaatttctg gcagacagca gattttatcg caccgctagt
     2221 accgttcggg ctaggtatgg ggcgtatcgg caatttcatt aacgatgaac tttgggggcg
     2281 tgtaaccgat gtgccttggg cggtgttatt tccaagcggt ggctatcttc cccgccaccc
     2341 gtcacagctt tatgaagcct ttttagaggg tgtggtgtta ctctttatcc tcaactggtt
     2401 tattcaaaag cctcgcccgg caggtgcggt ttcagggtta tttttaatcg gctacggcac
     2461 attccgcttt attgtggaat acttccgaga aatcgaccat aacgtcaata ccaccgcaga
     2521 tttaatcact cgtgggcaac tactctcttt accgatgatt atcggcggca tactgattat
     2581 ggcgtgggcg tataaagtaa acaaagtgaa ataaacgtag gggcaagtca atatttgccc
     2641 tcattacaaa aattgcaaaa aatttgcaga aaacgaccgc ttgtgtttga aggatatact
     2701 atgagtaaaa aatacaaagt catcggtttc gacttagacg gaacgctaat caacaccctc
     2761 cccgatctca ctcttgtcgc caattcaatg tttctagaag ccggtttgcc aacggttaca
     2821 caagaaaaag tgctgacttg gatcggtaaa ggggcagata ttttcttcca aaatgcggtt
     2881 gctcacaccg gcagaatttt ccaagccgat gagttggtga aaatgcgagt gagctttgat
     2941 aaatactacg ccacctatgt gtgcgaggaa agcacccttt tcccaaatgt gaaagaaacc
     3001 ttagaaatcc tcaaagcaaa cgactacccg ctggtggtga ttaccaacaa accgaccaaa
     3061 ttagtcgagc cggtgctttc cgctttcggc atttatcatt tattcgatga aacccttggt
     3121 gggcaatcgc tccccaaaat caaaccgcac cctgacccga tgttttttat ctgcgaaaaa
     3181 ttcggcatta ccccatcaga attacttttt gtcggcgact cagaaaatga cgtgattgcc
     3241 gccaaagccg ccggttgtga tgtggttgga ctaacttacg gctataacta caatgtgccg
     3301 attgaacaat ctaacccgac ttttgtgaca tctgaattta aagatgtgtt gaaaattgtg
     3361 gggttataaa gaaaacattt gttttctttt gatgtttgct ttagactttc cgaacctaaa
     3421 gatttaaagg agtaaagtat gccaacaatc gcattacgtc aggtcggtgg ctcggttgca
     3481 atggtgattc cgcctgcttt tttagaggca ctcaagctct ccgtcggtag caaagtggat
     3541 ttgtctttaa acgacaacca actcgtgatt aatcctgccc gcccaaaagt gaaatacagc
     3601 ttagaggaat tattaagaca atccgatttt gaggcagcaa ggaatgaaga aagccaatcg
     3661 tggttatccg agccggcaat aggaaaagaa attttatgaa acgtggcgat atttactggc
     3721 tcgatcttga tccaacctta ggacacgaac aatcaggctt ccgccccgtt gtaattgttt
     3781 ccgtaactgc atttaatcta gccagtaaac tgcctgtggt tgtgccgatt actaacggtg
     3841 gagcttttgc tgaaagactg ggctttgccg tttcattaaa agatgccggc ttaaaaacaa
     3901 cagggattat tcgatgcgat caacctcgca cagtcgatat tgcacaacgc catggaaaat
     3961 ttatcgaagc cttacccgaa agcctacttg atgaaattat ggcaagggtt tcagtgattt
     4021 ttgagtaaga tacaagcggt ctgatttgct ctattttttg caaaatcatc aataaatctg
     4081 accgcttgta cttttatccc ttcccaataa ccgttaagat aacctatatt tttcaaatca
     4141 aacgagaaga taaaatgagc aaacctattg tatttagtgg cgtgcagccc tcaggtgaat
     4201 tgactatcgg taactactta ggggcgttac gcaactgggt gaaaatgcaa gatgattatg
     4261 actgtgtata ttgcattgtc gatcaacacg ccattaccgt tcgtcaagat ccggagtcgc
     4321 tacgcaaatc aactttagat gtgttagccc tgtatttagc ttgtggcatt gatccaaaca
     4381 aaagcactat ttttattcaa tcccacgtgc cggaacacgc ccaattagct tgggtgctga
     4441 actgttacac ctatttcggt gaaatggggc gtatgacgca atttaaagat aaatcagcac
     4501 gctatgaaga gaatgtcaat gtgggcttat ttacttatcc ggtattaatg gcggcagata
     4561 ttctgcttta ccaagccaac caagtgccgg taggcgatga ccaaaaacaa catttggaaa
     4621 tcacccgtga cattgccaac cgtttcaatg ccttatacgg caaaaaagat tccgaaggca
     4681 acctgatcga gcctgttttt gcagtgccgg aagtctttat tgcgaaatcc ggggcaagag
     4741 tgatgtcgct acttgagccg accaaaaaaa tgtcaaaatc ggacgataat cgtaacaatg
     4801 tgattggact attggaagat ccgaaagcgg tagcgaagaa aatcaaacgg gcaatgaccg
     4861 atggcgatga accgccagta gtgcgttatg acgtacagaa taaagccggt gtctcgaatt
     4921 tattggatat tctctccgcc attaccggca aaaccattgc cgaattagaa accgaatttg
     4981 aaggcaaaat gtatggtcat ttgaaaacag aagtagcaga taaggtttcc gaactattaa
     5041 ccaatctgca agaacgttat caccactacc gccaagatga agcattattg gaaaaaatct
     5101 accgtgaagg ggcagaaaaa gctcgagctc aagccaaagc aacgttagat aaggtatatg
     5161 aattagtcgg ttttgtgcgt tactaacact taatgaaaaa tgctcttgag gattcaagag
     5221 catttttgca aaaaagaacc gattgtcaat tatttacggg cgttataaat cttcattgct
     5281 tccggcacaa ggcgggctaa gttttcttga cggtcagcat ttgatgggtg agttgagaaa
     5341 atggacaagc ctgaatcgcc attggcttta ctcattttta cccaaacatt cggcgctgct
     5401 gatgggttgt agcctgattc tgccattaaa attaacccaa cttcgtccgc ctcagtctct
     5461 tggctgcgag agaatggctt ggtggcaatc aaatccacgc cagtgctgag taaaccttcg
     5521 gtgcttacgc ctgttgaggc agtcacagcc acatctgcaa tagcacctac aatactggta
     5581 atagcgctaa ccgtacggtc tgatttaccg tgttctttca gtgcgtgagc catctcgtgt
     5641 cccattacca ctgcaatttc atcgttcgat aaattaagtc tttccactaa ccccgtgtaa
     5701 aacgccattt taccgcccgg catcgcccac gcattgagtt catccgattt caatacggta
     5761 atttcccaat gaaaaggtac accagtctgg ttggctcttt ccgcataagg cttcatttta
     5821 tgaaaaacag tgtgaatccg cttagcggtg gcagacgaat tgtcaatcgc attttgctga
     5881 cgagcttggg ttttcacttg agcataactt tgagccgctt cttggttaat gctttctgtt
     5941 gtggcacaag cggtaatcac tgttgctaaa aaaactgaat aacttaattt tttgatgaat
     6001 ttcattttat atcccacaaa aaatgccaaa caaatttgct tggcattcaa aaataaataa
     6061 ttatttctta gcacgctcga atgattctaa gatttcttgg cgagcttcgt ttacatcgcc
     6121 ccaaccttct actttcaccc atttgcccgc ttctaatgct ttatagcttt cgaagaagtg
     6181 ctggatttgt gcttttaata acgccggtaa gtcacctaca tctttgatgt ggtcatactc
     6241 tttacttaat ttggtgtgtg gaacagcaac cacttttgca tcaccgccgg cttcatcggt
     6301 catttttaac acaccgacag gacggcaacg aatcaccgaa cccggttgta acggatatgg
     6361 tgttggcact aatacatcaa ccgggtcacc gtctgatgat aaggtgttat tcacataacc
     6421 atagtttgcc ggatagaaca ttgcggttgc cataaagcga tccacaaata atgccccggt
     6481 ttctttgtcc acttcatatt tgattggatc agagtttgcc ggaatttcaa ttacaacata
     6541 aatatcgtcc ggtaattctt taccggcagg aactaattct aagcccattt tggtttcctt
     6601 ctataatagg tgaaataaac ggcgtgatta tagcctattt tcagaaaaag ataaaagccc
     6661 gtttctcttt tcattttccg ccaacaaatc cggctaattt tttgctaaat tgcttacaaa
     6721 ccgcacactc aaccattttt cgataaaaaa aacttgccaa agttttaaaa atccgtaaga
     6781 tatgccctcg ttacgcaaga ttatgggtca ttagctcagc cggtagagca gcggactttt
     6841 aatccgttgg tcgaaggttc gaatccttca tgacccacca ttaatcttca aaacacctct
     6901 aagggtcatt agctcagtcg gtagagcagc ggacttttaa tccgttggtc gaaggttcga
     6961 atccttcatg acccaccatt aatttcaaaa ctcctctgag ggtcattagc tcagtcggta
     7021 gagcagcgga cttttaatcc gttggtcgaa ggttcgaatc cttcatgacc caccatttac
     7081 tcaaatccca tttgcaaatt tttctgaaaa aacaaccgct ttatagtaga attcagtcaa
     7141 tttttatcac ttttatttta ttcatcaatg ctaaaaaaaa tccttattgc attaggctta
     7201 gccggcgtta ttgcttgcgg tggactgttt tacggctacc aaaaactcac ctctttagcc
     7261 gaacacccga tcacggttca gccgaatcaa cttttcgtat tggaaaaagg cgtttccagc
     7321 caaaaattag cggctctgtt agaagagcaa ggcattgtca cccacgatga cgccgatctt
     7381 atcccttatt taatgcgatt ataccctgag ttaagcaaat tcaaggctgg tgcttattca
     7441 ctcgcaggct taacgacagt aaaagatttg ctcgctcatt taagctccgg caaagaagtg
     7501 caacttaacg tgcaatttat tgagggcaaa acttttaaaa tttggcggga acaactagcg
     7561 aaagccgatt atttacagca cacgctacaa ggcaaatcgg aaaaagaaat cgctgactta
     7621 ctcggcattc cacacgaaaa aatcgaaggt tggatagccc cggatactta caactacacg
     7681 cccaattcca ccgatttagc cttgcttaaa cgggcttatc aaaagcagaa aacggcgttg
     7741 gaacaggctt ggaaaaatag agcggaaaat ctaccgcttg caacaccata cgaaatgctg
     7801 attcttgcct cgattgtgga aaaagagacc ggcattgcga ccgaacgccc acaagtggca
     7861 tcggtcttta ttaaccgttt acgcaacaat atgcgactgc aaaccgatcc aaccgtcatt
     7921 tacggaatgg gcgatcgtta taacggcaat atccgccgca aagatttaga agaggcaacg
     7981 ccatacaata cttaccagat tgacggctta ccgccaacgc cgattgccat gccgagtgaa
     8041 gcttcgatta aagcggttgc caacccggat aatacaccct acctctattt tgtggcagac
     8101 ggcacgggcg gtcataaatt cagcaaaaca ctgaatgagc ataataaagc ggtggcagaa
     8161 tggattcaaa ttgaacgcaa acgcaaaaat gaacaaaaat agtgagaaca atatgcgtgg
     8221 aaaatttatt gtaattgaag gcttagaggg cgcaggcaaa acgactgctc accaagtgat
     8281 tctcaaagag ttggaacaag ccggcattaa tgacgtagta atgacccgag aacccggcgg
     8341 cacccccctt gccgaaaagt tacgccattt aattaaacac gaaaccgaag aagccattaa
     8401 cgataaggct gagctgctaa tgctctacgc tgctcgtgtt caattagtcg aaaatgtgat
     8461 caaacctgcc cttgccgaag gcaaatgggt tctgggcgac cgccacgata tgtcttccca
     8521 agcctatcaa ggcggtggac gtaagttgga tcgtcactta ctcgaaacct taaaagaatc
     8581 ggtactcggc acattcgagc cagatttaac gatttatctc gatctcgatc cggtgattgg
     8641 tttagaaaga gccagaggca gaggcgaatt agaccgcatc gaacagcaaa gccttgactt
     8701 cttctaccgc acacgagagc gttatttaga attaacccaa cacaacgata aagccgtgat
     8761 catcaatgcc gaacaaccca tcgaacaggt gactgcggat attcaacaag taattagaaa
     8821 ctggctgaaa taatgtaccc ttggctcgaa agcacttatc aacaacttac cgattcattt
     8881 ttacagggtc gaggtcatca cgccttactg ttcaaaacag atgttggtct tggtacagac
     8941 accttaatct acaaggtggc tgaatggttg ctttgcagcc aaaaactccg ccatcaacct
     9001 tgtcttgaat gcaaaagttg cctgcttatg caaagcaaca accaccccga tttccacatt
     9061 cttgagccga ttgaagacaa agatattggt atcgaccaag tgcgtgagtt gatttataaa
     9121 ctccagaatt tcgcccaaca agggggaaat acggtcgttt atattcgagg agttgatcgt
     9181 ttaaccgagg caagcagtaa tgccctgctc aaaaccttgg aagagccacg tgaaaacgtc
     9241 tatttcttgc tcgaagcacc gcttcaagca acagttttag ctaccattca aagccgcagc
     9301 caaacttggg tactttacgc cccacaagcc tcagaagtaa tggcttggct acaaacacaa
     9361 tttccggcaa tctcaaccga cgacttagag attgcactcc gcctttgcca ctcacgccca
     9421 ctaatttgca aaaattttat cgaaaatgac cgcttgcaac agcgaaaaac ctttttgcaa
     9481 accttctggc gtttctacaa aagccacgat gtcttcttgt tattccaagc cttcgcccaa
     9541 gaaaaagagc tgattttaca gcaactcgaa tggctggaaa gtttctttag cgatgcccta
     9601 aaagctaaaa tggcaatcag ccacggttgg ctaaacccgg atctccaaaa cggcattctc
     9661 ccttttagcc aacaactaac gacccacggc ttacttaaag ggcatcaaat tctccaacaa
     9721 acccagcggg atttaaccga aattaacgcc gtcaatccgg aattgatgtt gctagattgc
     9781 ctgacgaagt tggttttggt gtttgagtaa aagccctctc tcatagaagg tagctttcaa
     9841 ttagccgtaa aaagaggctt ctagccctag aatatagttt ataacttgca aaattatcta
     9901 tctttgttat tgtatgaata attcacacaa ggagaatatt atggcaagaa caaccagcgt
     9961 gactttaggc gaacctttaa atgattttgt aaatgaaatg gtggcaagtg ggcgttatgg
    10021 ctctaccagt gaagtagtga gaaccgcttt acgaatgctt gaggaaaaag agcaatactt
    10081 agctcagttg cgacaagcca ttgatgatgg tgatgctagt ggttatgcaa ccgaaacgat
    10141 tgatgaaatg atgttgagag taaaggcgga acttaatgta taaactttct gctcaagcac
    10201 tccgagatca agagaaactt tttcgttaca gtatctctca atttggtgtt caacaaacag
    10261 aatcttattt tgcagatcta aagcatattt tgaatttatt agctgatttt ccaacaatgg
    10321 gaacttctgc ggaatatatt cgtggtggct tgcgaatgca cacacatcaa tctcatacaa
    10381 tttattatcg aataaaagca gatcatatat ttattgttcg catcttacat aaccaaatga
    10441 atcataaacg ctatatttag aaaaatgaaa gacttattta tcatagactc acattgtcat
    10501 ctagattctc tagactacga aactcgtcac aaaaacgtgg acgaagtaat tgaaaatgcc
    10561 aaagcccgag gggtgcatca ttttatctcg gtttgcacta cagttgggcg ttttgaagca
    10621 atgaaaaact taaccgccca tcgtaatgac gtttcacttt cttgtggcgt tcacccgttg
    10681 aatgtggaag atgaaccttt tgattacgat aaattatttc agttcgctca agatccgaaa
    10741 gtggttgcca ttggggaaac tggtttggat tatcactaca caccggaaac caaagcgttg
    10801 caacaatcgc ttttcgttca acaaattgaa attgcaaaca aactcaataa gccactcatt
    10861 atccattctc gttcggcacg ccaagatacg atggatatgt tggaacaaaa taatgccgaa
    10921 aaatgcggtg gggtgttgca ttgctttacc gaagattggg caatggcaaa acgggcttta
    10981 gacatcggct tttatatctc aatttcgggc attattactt tccgcaatgc agaagaactc
    11041 cgagaagtcg tgcgaaaagt gccgttagat cgcttattgg ttgaaacaga ttccccttat
    11101 cttgccccga ttccttatcg tggtaagccg aaccagccgg cgtatgtgcg ggaaacttgc
    11161 gaatatgtgg cgacattaaa aggcgtttca actgaagaat tagctcgcat tacaaccgaa
    11221 aatgtgcaac acttattcaa cattaaatta taaggaacta atatgagagc aatacttaag
    11281 tattttctga ttcttgtctc actatcattt tttattgtat taggcggtgc agttaattat
    11341 gcaatgccaa gttatgaaga taccgtagta acaggtatgg aagtacgccg aatggataaa
    11401 gatggtatta tcagcaaagc gaatcctgct gatggcgagg tgcgcgatgt ttatttctta
    11461 ttcacggaag atcctgaaac caaaaaggta atggtttatc gtaatgaaga taccggctgg
    11521 gggttgcctc cttatttcaa attcggatct gccgacattc aagccaaagc tcaagcctac
    11581 gctaacgaaa aacaacgtgt gcaaattaaa tattacggct ggcgaatcaa ttggctaaat
    11641 gaatttagaa atattgtttc aatcaagcca ttagaagaag cagaaacagt cagcaaacca
    11701 attatgagct atgtacttta tgccgtattg gcgttcttgt tcttcctctc agtacaattt
    11761 attcgtggca tttttaaaga ttaatgccga ttaacctttg acaaacggtt cgattttgta
    11821 aaaaattgaa ccgttttctt ttttatcaac aatatcaaat gacgtactat tttattgccg
    11881 atctccactt aaatgaaaat cagcctgaaa ttacccacct ctttttgcaa tttatgcaag
    11941 aaaaagcact acttgcagaa gcggtttata tcttaggtga tctgtttgat ttctggattg
    12001 gcgatgatga gcagtctgaa ctcatttcaa ccgttaaaca ggcaatcaaa accctcacta
    12061 caagcggtac aaaatgctat tttatttgcg gaaatcgtga ttttttaatt ggcaaacgat
    12121 tcagcgaaca aacgggtatg gttattttgc ctgattatca cgttatagat ttattcggca
    12181 catctacctt gctttgccac ggcgatacgc tttgtactga tgatgtgaaa tatcaacaat
    12241 ttcgtaaaaa agtccaccaa aaatggcgac aagctatctt tttgatgttt ccgctttctt
    12301 ggcgaattcg tattgcggag aaaattcgat ccaaaagcaa acaagaaaag cgtgataaat
    12361 ccgctgaaat tatggacgta aacgctgaag ttaccgctca aattgtcgca aaatacaata
    12421 caactcaact tatacacggg catacgcatc gacaagcaat ccatcagcat aatggattta
    12481 cccgcattgt attaggcgac tggaaagaaa attacgcctc tattttaagc gtaaccgagc
    12541 aaggagctga atttatatga ttaatgtgat tattccttgc tataacgccg aaaacaccct
    12601 tgttcgtgca gtgcaaagtg tattaaatca gtctggatta aatctattgt ggcttattga
    12661 tgatgcttca acggataata cgcttgcctt agctaaacat ttacaagccc aagtgcctga
    12721 taaaattaga gtggaacaaa tgcctcaaaa tggcggtgtt gccaaagcac gcaactgggg
    12781 agcattacaa agtgaaacag atttaattgc ctttttagat gctgatgatg cttatgaaaa
    12841 cggggcattg caagttgctg aaaagatttt tgagtttaaa ccggaaaccg gcttggttcg
    12901 gttagcatta aaaccggtaa cttagatcaa cgttacagct ctcaccctaa ttttgagtta
    12961 gcttggcaat atatgcaaat gactggtgca ggcaacactg tatttcggcg tagtttcttc
    13021 ctcgcttgtg gcggctttcc acaacatcag ctcttccaag aattaggtgg agaagatggt
    13081 gctttaggca tagccactac acaaattagc tctgtagcta ctgcatttaa tgatgtcggt
    13141 gttttacatt actgccgaga gggtatgcac gcagaaagat tattaaatgc gattttattc
    13201 aacgaaaaag atcccaatgt tactgaagaa aaagttaaac aagccaacct aattaccgaa
    13261 aatattgtta ataatattag aaatctacaa gactgtctta atagtaaagg gattggtatt
    13321 aagccttata cgcttgaatg gagctaaaaa agcatttgca gattttccct aaaaaaa
//
LOCUS       DANMGB010000061        13352 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.061, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000061 DANMGB010000000
VERSION     DANMGB010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13352
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.061"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..784
                     /locus_tag="PXG19_001313"
     CDS             <1..784
                     /locus_tag="PXG19_001313"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL6066612.1"
                     /translation="PLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGTPEKT
                     YKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLENINI
                     LNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIKTLTE
                     DTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEGAVNH
                     LWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            865..2007
                     /gene="nagA"
                     /locus_tag="PXG19_001314"
     CDS             865..2007
                     /gene="nagA"
                     /locus_tag="PXG19_001314"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL6066613.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2089..2403
                     /locus_tag="PXG19_001315"
     CDS             2089..2403
                     /locus_tag="PXG19_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL6066614.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2482..3672)
                     /locus_tag="PXG19_001316"
     CDS             complement(2482..3672)
                     /locus_tag="PXG19_001316"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL6066615.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(4035..5339)
                     /locus_tag="PXG19_001317"
     CDS             complement(4035..5339)
                     /locus_tag="PXG19_001317"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL6066616.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(5349..7175)
                     /gene="oadA"
                     /locus_tag="PXG19_001318"
     CDS             complement(5349..7175)
                     /gene="oadA"
                     /locus_tag="PXG19_001318"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL6066617.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(7215..7469)
                     /locus_tag="PXG19_001319"
     CDS             complement(7215..7469)
                     /locus_tag="PXG19_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL6066618.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(7659..8846)
                     /locus_tag="PXG19_001320"
     CDS             complement(7659..8846)
                     /locus_tag="PXG19_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6066619.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(9121..9858)
                     /gene="pxpA"
                     /locus_tag="PXG19_001321"
     CDS             complement(9121..9858)
                     /gene="pxpA"
                     /locus_tag="PXG19_001321"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL6066620.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(9845..10758)
                     /locus_tag="PXG19_001322"
                     /pseudo
     CDS             complement(9845..10758)
                     /locus_tag="PXG19_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
     gene            complement(10755..11402)
                     /gene="pxpB"
                     /locus_tag="PXG19_001323"
     CDS             complement(10755..11402)
                     /gene="pxpB"
                     /locus_tag="PXG19_001323"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL6066621.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(11496..12320)
                     /locus_tag="PXG19_001324"
     CDS             complement(11496..12320)
                     /locus_tag="PXG19_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL6066622.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(12454..13278)
                     /locus_tag="PXG19_001325"
     CDS             complement(12454..13278)
                     /locus_tag="PXG19_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066623.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         3630 a         2981 c         3009 g         3732 t
ORIGIN      
        1 tccgttagaa actgatcacg atgtgagtgt ttgggctgct cgttatattg ttgatcgtat
       61 caatgcattc caaccaacca aagaaaaacc ttttgtgctt ggcttaccaa ccggcggtac
      121 gcctgaaaaa acctataaag aattaattaa attatatcaa gctggtgaag tgagctttaa
      181 aaatgtggtg actttcaata tggacgaata cgtcggctta cctaaggaac accctgaaag
      241 ctaccacagt tttatgttca agcacttttt tgaccacgtt gatattccgc ttgagaatat
      301 caatatcctc aacggtatgg cggaagacgt gaatgcagaa tgcgaacgtt atgaagaaaa
      361 aatccgtttt tatggtaaaa tccatctgtt tatgggcggg gtcggtgtgg atgggcatat
      421 tgcgtttaat gagcctgcat cttcgctttc ttcccgcact cgaattaaaa cgcttaccga
      481 agatactcgc attgcaaact cacgtttctt taacaatgac gtaagccaag tgccgaaatt
      541 tgctttaacc gttggggttg gtacgttgct tgatgccgaa gaagtgatga tcttagtgac
      601 cggccataac aaagccttag cattacaggc gtgtgtggaa ggggcggtaa atcatctttg
      661 gaccatcagt tgcttacaat tacatcgccg tggtatagtg gtgtgtgatg agccggcaac
      721 ccaagagctg aaagttaaaa cagttaagta tttcaaagag ttagagaaaa acgtagctcg
      781 ctaattctga ttttacaagc ggttaatttt gtaatatttt ttacaaaaac gaccgcctgt
      841 tagcatttaa agagaagaga gaaaatgaac cattatgcct taacaaactg tgtgatttac
      901 accggtgaac aagtgcttta ccaacacgca ttagtggtga aagaagataa aatcgactcc
      961 attgttttgg aagaaaattt accgctggat ctgcaaaaaa tcgacctaaa aggagcgaat
     1021 ctttcagccg gttttattga cttgcaactg aacggctgcg gtggggtgat gtttaatgaa
     1081 gaaatcacta cccgcacttt agaaattatg caggaaacca atctgcgttc aggcacaacc
     1141 agctatttac cgacttttat tacctcgcct gatgagggag tgaaacaagc ggtggcggta
     1201 atgcgtgagt atttgtcgaa acacaaaaac caagcactcg gcttgcattt ggaaggacct
     1261 tatctaagtg tggcaaagaa aggagtacac cgtccggaat ttatccgtga aatcagccct
     1321 gaaatgttag atttcttatg cgataacggc gatgtaatta cgaaaatcac gattgcagca
     1381 gaaaacccga ccgcagacca tatcaaacgc tttaatgatg caggaattat tgtatctatc
     1441 gggcattcca atgccacttt tgctcaaacc aaacagcgaa ttgccgaagg ggcagcgttt
     1501 gctacgcatt tacacaatgc aatgtcgccg gtcagcaacg ggcgtgaagg cggtgtagta
     1561 ggggcggtgt tggatagcga tatttacacc ggcattattt gcgatggctt gcacgttgaa
     1621 tggggcaaca ttcgcattgc caaaaaagcc aaaggcgata aattagtgat tgtcagcgat
     1681 gctgttgctg ccgcaggaag tgatattgag tcgtttattt ttgtcggtaa aaaagtcacg
     1741 gtgaaagatg gcaaatgcta cgatgaattc ggagcattgg gcggtgcggc aatcacgatg
     1801 atcgaatcca ttcgcaacgt agtgcaacat tgcgatatta gcctgaatga agcaatccga
     1861 atgagtaccc tttacccggc aaaagcgatt ggggtagagg aaacactcgg ctcacttgaa
     1921 gccggcaaaa ttgccaacct tgcgattttc gataatcaat ttgaagtaaa agcgactgct
     1981 gtaaacgggc aattacagtg gcattaattt tgctacaaat tctaagcata acagcatata
     2041 atccaaaggc aggcattgtg tctgcctttt atttataggg agaataacat gcaatttaaa
     2101 gattacttag ccacttttcc aactattgat catctagccg gcttaaacgt gataaatagc
     2161 ggtgaagtga ttcaacatat tcctgcgatt gaaggtaaat taggttcact aaaactttac
     2221 aatgcactgt ttgcgaaatt tgatgggaaa ttaaccgcta gtgcagcaaa acaagggttg
     2281 gaatggtttg ccgaacacgt tgaagatgcg aaaaataatg tgggtaagca cccgaatatt
     2341 gatctattat ttagggtaat tgagcaagat ttatctttaa gtttagagcc gattgttaaa
     2401 taagattgca ctagtgaaaa ataacaagcg gtcattatct gcaaaatttt tgcaaataat
     2461 gactgcttgt gtttaagagg cttatttcac ggtaatgcgt gcaaatttgc gtttgccgac
     2521 ttggtaaaca aaagtgcctt tttgagcagt ttgtttcaca tcttccactt tttcaccatc
     2581 aattttaacc ccgccttgtt gggctgagcg aattgcctct gaagtggacg gtactaagcc
     2641 ggcttctttc agtagagccg ctaggccgat ttcaccctca aaggtaaatt caggcacttc
     2701 atcaggaatt gccccttttt ggaaacggtt gataaactct tgctctgctg catctgctgc
     2761 cgcttcatcg tggaaacgag cgataatttc ttttgccagt agaattttca catcacgcgg
     2821 gtttttgcca ttttcaacat ccgcttttaa ttgtgcaatt tcgtctaatg gacggaatga
     2881 gagcaggttg taccaatccc acattaaatc gtctgaaatc gacataattt tgccgaacat
     2941 ttcgcttgga gcttcagtta caccaatgta gttgccgaga gatttcgaca tttttttctc
     3001 gccgtctaag ccgacaagta gtgggagtgt cattgccact tgtggttttt gaccggctga
     3061 tttttgtaac tcacgtccaa ctaacaagtt aaaggtttgg tctgtaccac ctaattccac
     3121 gtcagctttc agttctaccg agtcgtgacc ttgtagtagc ggataaataa attcgtggat
     3181 tgcgatcggt tgttggttcg tgaaacggtt tttgaaatct tcacgttcta acattcgagc
     3241 aacggtgtag ttggaggcta agcggatcat accttccgta cctaacttgc ctaaccattc
     3301 ggagttgaat acgatcttgg ttttttgtgg atctaaaatt ttgaagatct gctctttata
     3361 ggtttcggca ttgcgtaaca cgtcttcacg gctaagtggc ggacgggtag agttttttcc
     3421 tgatggatcg cctaccatac cggtgaaatc accgattaag aaatagactt cgtgtccgaa
     3481 ttgttggaat tgacgaagtt tgttcagcac aacagtatga cctaagtgaa tatccggtgc
     3541 agttgggtct gcccctaatt taatacgcaa tgggcggttt tcttttaatt tggtgattaa
     3601 atcttcttct gaataaatat tttccacgcc acgtttaagt tcggcaagga ctgattcgat
     3661 agcttgagtc atttatcttc cttttagtct tgaatataaa aaatggatct attatagcgg
     3721 tatgaattga aattgatagg ctataggcga aaaaaaacgc cgtattttgt gggggaatac
     3781 ggcgtaaaga gttggagtga ttacctatta tttttgaagt gatttaatga taatgattat
     3841 catctgttaa gtcaatactt tttttgaaaa ttttcaataa gaattattct catcaattaa
     3901 gtaagatgga tactacggca attagtgaag aatgtacagc ggaattttcg tattgtaaga
     3961 gtgttggtaa gcggtatttt tagaaaaaac ctccgagagc ggttattttt cggaggtttt
     4021 ttgcaaatga ggatttacat cgttgaaatg tatttcaaca tcacccccgc tgcaatcgca
     4081 gagccaatca cgccggcaac gtttgggccc attgcgtgca ttaacaagaa gttttgttta
     4141 tcgtactctt gtccgacttt gtttgatacc cgtgcagcca tcggcacggc agaaacaccc
     4201 gctgagccga taagtgggtt gattttgtgc tgactaaagc ggttcattat tttcgccata
     4261 atcacaccgc ttgcagtgcc gatcccaaag gcaatcacgc ccaatactaa aatgcctagt
     4321 gtttgcggtt gtaagaattt gtctgcgacc aattttgccc ccaccgataa ccctaagaaa
     4381 atcgtcacga tattgattaa cgcattttgg gcggtgtcgt ttaagcgttc tactacgcca
     4441 ctggttcgca gtaagttgcc aaagcagaac attcccaata acggtgcagc atccggcagt
     4501 aagagtgcca ctaataatag caacacgata gggaaaataa ttttctcacg gttgcttaca
     4561 ttacggagct gaaccattcg gattttacgt tcttgctcgg tggttaaggc tttcataatc
     4621 ggcggctgaa tcagtggcac taacgccata taagaataag ccgctaccgc aatcgcacct
     4681 aataattcag gggcaagttt gctggcaaga taaatcgcgg tcgggccatc tgccccgccg
     4741 ataatcccaa tcgcagcggc ttgtggcaat gtgaagtcga taatgcctaa ccagtttagc
     4801 cctaatgcac ccagtacggt agcaaaaatc ccaaattgag ccgcagcccc aagcattaac
     4861 attcgagggt tggcaagtaa agggccgaaa tcagtcatcg ccccgacacc cataaagata
     4921 ataagcggag caacgccgta gccgatagca actttataga ataatgccaa cacaccggcg
     4981 gtatagccca tatcgccagc cattacttca agctcatttt gaacagaggg agcagccagt
     5041 gcgatggcat ctttaatcga atgcagatca aggcttgtac tatttacctt agcagcaata
     5101 attgccagtt gctcggcaga accgctgtgg agtaaattgt ctaatgccgt cattgccata
     5161 cctgcttccg gaatgtttga catcaaacca ccaaagccaa taggcagtag taaaagcggt
     5221 tcgaattttc gggcgatggc aagccaaagc aacactaaac tgatgacaat cataatcgct
     5281 tgccccagtt ctaaatgcat tagccccata cctttaaaaa gtgcaataat actttccata
     5341 ccggactcct aggcaatact cattaaagta tcatttaccg ccacaacatc gccttgtttg
     5401 acattaatgc cttgaatcgt gccggatttt gccgcacaaa tttgggtttc cattttcatt
     5461 gcttcaagaa tcagtaacac atcgccttca gcaacttgtt gcccctcttt cacttccact
     5521 ttcaaaatgt tccctgccat tggagcattc accggttcgg cattggctga tagcgtattt
     5581 gcagattttg gtgcagaatc gaccgcttgc ggagccggtg ttgctggtgt tggagcgata
     5641 ttggttatat cgccaccttc actcaccttc accacaaagg ctttgccttc aagctcaacg
     5701 gtataaatgg ctgaaccgga ttgtgtttgg gcttttggtg cagaagcagc ggaggcttgt
     5761 gccggttttg cttcatcagc acttggcact ggctcaaagg cagacggatt attgcggttt
     5821 tccaaatatt tccagcccac ttgttggaag agtgccacaa tcaatacatc atcaatcatg
     5881 ttttcagata gcgtaatgcc tttttctttt gcacttgcag tcacttctgc cactaatttt
     5941 tccagttccg gcggaagatg atcggctggg cggtcggtaa tcggctctgc tccctcaagc
     6001 actctgtctt gcaaggcttt gtttaccggt gccggtgtgc gaccatattc gccttttaaa
     6061 atacctgcag tttctttggc gatagtttta taacgttcgc ccattaatac gttcatcacc
     6121 gcttgtgtgc cgacaatttg tgaggttggt gtcaccaacg gaatattgcc taaatcttca
     6181 cgcacacgag gaatttcttg taaaaccaag tctaatttat ccgacgcatt ttgttgcttg
     6241 agttggcttt cgaggttggt cagcatgcca cccggcactt gggcaaccaa aatacggcta
     6301 tctataccac ggagctgtcc ttcaaatttt gcatattttt tacgcacgtt acggaagtag
     6361 gcagagattt tctccagagc tggaatgctc aagccggttt catacggcgt gccttgaagt
     6421 gtggcgacaa tagactcggt tgccgggtga ccgtaagtgc cggacattga tgaaatggag
     6481 gtatcgacac catcgacacc ggcttcaatc gctttgagca acgccatttc agccataccg
     6541 gtggttgaat ggcaatggag atgtagctca acgtcgtagc gttttttaat ttcgctgact
     6601 aattcatagg ctgccattgg ggttaaaatg cccgacatat ctttgatcac caacgaatcc
     6661 acgccaattt ccaataattg ctcggttaca tccaaccacg tttgtagggt atgaacaggg
     6721 ctggtggtgt aactcaaagt accttgtgcg tgcccgccgt gttttttgac cgcttgtaat
     6781 gcggcttgca tattgcgagg gtcgttgagg gcatcaaata cacggaacac actcataccg
     6841 tttgccaccg aacgctcgac aaatttatct accacatcgt cggcataatg acgataaccc
     6901 aataagtttt gcccacgtag cagcatttgc attggggttt tcggcattgc ttttttcagc
     6961 tcacgtaaac gcacccacgg atcttcgcct aaaaaacgaa tacaactgtc aaaagttgcc
     7021 ccgccccaag tttctaacga ccaatagccg atattatcca gctcggaggc aatcggtaac
     7081 atatcgtcta agcgtaaacg agtcgcaaaa agggattggt gtgcatcacg caaaaccaca
     7141 tcggtaatcg caattttttt cggttgagtt gtcataatca aattccttct aattatttta
     7201 tttttgaaat cttgttaatg ttgcccgtta attcgacgat gatgagcaat cgcagcggca
     7261 atcacagggc gtaaacgctc taaatcatct gggggagatt gaggcacagt tttagaggct
     7321 ggaatagaaa caggttcggg gaaatattga ttgataatct tggaaataaa gctgatggca
     7381 taaattaaaa ccagcaggaa cagcataaca aatcccattc cggctaccat taaatttata
     7441 ccttccgcaa agagttctgc aggtgccata atttatcctt aaaatgtaga aatgatgaag
     7501 aaaatgtaga aaaaattcag atttatttca aattatttag cctcaaaatg agtggtagat
     7561 cacaaacttt aaacgcaagc ggtcagattt tacaaatttt ttacaagagt agttaaaatt
     7621 tgcaaaacct gaccttaggt tagcttgaag ctaagtcgtt atgccattag ccccgaaata
     7681 tattttgaaa gggtcattgc acttagcacc gccattagaa tcaccacaat cgcccctgaa
     7741 acggtcatcc acacagggtg tttgtagtcg cccacaatct tggttttgtg agctgccagc
     7801 agaattaacc cgagggaaat cggtagaatt aagccgttaa gcgtccctac aaacaccaag
     7861 acttgtgccg gtctgccgat ggttgccagc acggcggttg aaaccacaat aaaggcgaca
     7921 atgaaacagt ttttgtgttt ttcgataaat ggcgagaatg aagtaatgaa ggaaaccgag
     7981 gtataagccg ccccaatcac agaggtaatg gaggctgccc aaatcaccac gccgaagatc
     8041 atcaaaccga catcgccggc aacgtgggca aatggggtag ccgcagggtt tttcggatca
     8101 agttgcacgc ccattgacac cacgcccagc accgctaaaa acagtaccac acgcataatt
     8161 gaggcgatta aaatggctga caccgagctt ttgctcacct cttttaaatt ctctttgcct
     8221 ttaatgcctg catcaagcaa acggtgcgca ccagcaaagg tgatgtatcc accaacagtt
     8281 ccgcccacta gcgtgacaat cgcaatcacg tctaattttt ccggcacaaa ggtatgcacc
     8341 accgcatcgt cgattggcag attggctttt acggcaacga agatggttaa agcaatcatc
     8401 acaaagccca taatttgtgc aaatctgtcc atcactttac cagcttcatg gaacaggaac
     8461 acgcccacgg caatcgcacc gctgaccacc gcacccattt caggggaaag tccggtgaga
     8521 atgtttagcc ctaaacctgc accgcccacg ttgccgatat taaaggctaa accgcccatc
     8581 acgataagca gagccagaaa gtaacctgcc cccggcaata cggcattggc gatgtcttga
     8641 gctttctttt ccgatactgc tacaattcgc caaatattca gttgagcacc gatatcaagc
     8701 aagatcgaga gtaagatcac aaagccgaag ctggcaagta gggtttgggt gaaggtggct
     8761 gtttgggtta agaaccccgg cccgatggcg gaggtcgcca ttaaaaatgc tgccccgagt
     8821 agggcgctac ggttgttgtt tgacattgtg ttggttcctt ttttgttgtt aatgagtcat
     8881 tattcgtgga tttatcatgg taatattccc ctctttagca aagaggggtt aggggagatt
     8941 tggcagtaga actcatcgaa gtgagagagt taataatgct caatttaacc tcttgaaatt
     9001 acttattttc tccgtaaatc gcttctgtca aatctccccc agcccctctt ttctaaagag
     9061 gggagttcga tctccaagag ttttatttct ggttttccgt ccattttgac taaaacagga
     9121 tcaggctttc accaaaatcc cctttgcctg taactctttt ttaattcgct cggcaaatac
     9181 cacggcgtgt tcgccgtcac cgtgtaagca aatgctgtcg gctttaatcg ccacattacc
     9241 accatcaacg gttggtacag tgccgtctaa caccatttgc aagacttggc tgatcgcttc
     9301 atcatcgctt tctaccattg catcatcacg ggtgcgaggc acgagcgagc cgtcagctaa
     9361 atagtggcgg tcggcaaaga cttcggaaat ggtttccaaa ccgtgctgct cggcaatgct
     9421 caacatcagg ctgccggata agcccatcag tttgaggttg ggatcgaact gtttgaccgt
     9481 attggcgata agggtggcaa ggtgagggtc tttggcggcc atattgtata aagcgccgtg
     9541 cggtttaacg tagctcatcg gcatattttc cgcatcacat aaggctttgg cggctcccag
     9601 ttggtagagc agacaggctt taagttcatc atcgggcagt tgcatattgg tacgcccaaa
     9661 gttttcccta tctggaaaac tcgggtgagc gccaactcgc acgctgtttt ccttcgccca
     9721 gttaatcgct ttacgcattt cattgtaatc accggcgtgc aagccacagc agacattcgc
     9781 cgaagtaacg agctgtaata atgaatgatc gttgccacaa ccttcggcaa gatcgacatt
     9841 taaatcaacg tgattcattc gcttttctcc gaattgtttc caaataattt tgatcttttt
     9901 gataaatttc gaccgcttgt tcacggctta cttgctcaaa ttgcaccgtt gagccgaacg
     9961 gattttgtgc caaccgcccg agatcggcct gaataatgca ggcaattttc ggataaccac
    10021 cggtggtttg ggcatctgcc atcagcacaa tcggctggcc gtccggcggc acttgcaccg
    10081 taccactcgg ggctgcgtag gagagcattt caagggaagc ggtcaattcc aacgcttttt
    10141 ctgcaaaacg gtagcccata cggttgctgt tgttttgcag ttgccaccct tgttgccaaa
    10201 agcgttcacg gctatctgcg gtaaaggctt catattcgct cgaagcggtt gcccgaatgc
    10261 gtgaggtgaa atcaatcggc tcaatcgaca tcaaagaaag tcggctgtct ctgcggcctg
    10321 tggcgatgtt atcgccggct tttaacattc tgccttgaaa accgccaaat tgagctttga
    10381 gagcggtact tgccgaacct aacacctgcg gcaccagaaa accgcctgcc acgcataaat
    10441 aggcgtaatt gccgagaaca atccgtttta tcgtcagcgt ttgacgggcg ttggcagtgt
    10501 agcggtaata ggaaaaaacc ggcgtgccgt ccagctccgc ctccaccaat gcaccggtga
    10561 ggcaaaatgg cgtgtcgcaa tcacgccaag ggtaagttca atcgcaggtg cattatttgc
    10621 attttttaac aataaattac ccgcttgtaa ggcaaggctg tccatcgcac cgccgtggct
    10681 cacgcctaaa tggcgataac cataacgccc taaatcttga atgtgggcaa aaccctgtat
    10741 tatttcgata taaatcatag cgttatactc tccgccacaa atctaacatt atcgccggct
    10801 gtaagtagcg ttggcggatt gtgttgaata tcaaacaacg gtaactcggt tcgtcctaac
    10861 agttgccagc cacctggtga ggtaaaggga taaatgcctg tttgcctgcc gccgatgccg
    10921 accgaaccgg cagggacttt ggtgcgaggc acgtttcggc gtggggtgtg taaattttgc
    10981 ggtaagccgt tgaggtaagg aaagccgggt tgaaagccga tcataaacac ggtgtaagtc
    11041 ggttcggtat gacggcggat aatctcttcg ggagtggtat tgtggaattg ggcgacttca
    11101 aacagatctt cgccaaattc accgccgtaa tggacaggga tttcaatcag gcgtggggat
    11161 tgtgcggctt gggcttggtc gttttcccag agttgttgaa ccgcttggat aaggcgtgtg
    11221 ctatcggtgc caatggcgtg aaatagggta aaattgttca ttcctaccac cacttccaac
    11281 acgccatcta aggctcttgc ctgttctgcc acccgccaaa tctgttgctg tttggcaagc
    11341 tctgcaggcg gttcggctaa gcagagcagg gaatgttcgc tggtatgatg aatcgtcagc
    11401 ataattgccc tcaaattgtt acaaaaaggt aacaactttt tacgctgata tatccagact
    11461 gtcaatttta ttttgttgaa aatgtgaaat agctcttaat tttcagaaat ttgatcattt
    11521 cttattcgcc aaaacgttgc aaatctgggc ttgcctgatt ctgtgacacc tcgatattta
    11581 taggtaatga ttgagccaat cggtggcgga ttttctcgtt ctttatcttt aaaaccgctg
    11641 ccaatccgaa aacgtccacg ttgattttca caagtgattg ccccgagttt atcggtatat
    11701 ttccctttgc ctttatgatg ggcaaccaca gtgcattcct catctaaaac cggtttgatt
    11761 ttcaaaattt gggcagaacg accttgaata tagcctgcat tcgggttgcg aacgataacc
    11821 ccttcgccac cttgttccag cacagattgg taaaattgtt gaaggtgggc tttatcttta
    11881 atcggaattt gctcaataat agcgatatgg agcgttggat gttgcttcag ataattctct
    11941 aaggtcgcca gccgttcaat caaattccct tgtgcatttg gcacatcgaa cacctgtaat
    12001 ttcagcttgt gccaaccttt gggctgagcg gaacgcacaa tgcttgaaat ttcctcaaat
    12061 ttgccccgtt cgctaaacag ttcgccgtca atcgcaaaag gagggaaatc ttgaataaaa
    12121 tagtcgggtg gattgagcgg ataaccttgg cggctgatga gctgttgacc gtcccaaaag
    12181 cctcgcacgc catcgagttt ttctgacatt acccagccac tgatgtcttg atcttgatat
    12241 tgctcaacga gcattaactc gggcgatttg gcaaaaatag ggttaccaat gaagagtagg
    12301 aataagagca gttttttcat agtctctccg aaatagtgcc tccgaatatg caaggcacta
    12361 taaaggaaag cgtgcaaaca gtcagaaatg aatctcaatt tttcgacgca gatcgcaaaa
    12421 ttttccgaaa aactgatcgc ttgagtgaga aatttaacgt actgtttgaa ttaaagcaga
    12481 aatatcctcg ctaaaggttt ccaacttcgc catttcttca atttggctat gagaatattt
    12541 cttcacattg taaacgacca ccatacttac atcacctact tgcaataaat tactttcgcc
    12601 aaaaggcgtg tagcgtgttg ccccaatgct gataatcgct ttagttgggt agtttgcctg
    12661 ttttaacatt tcggaaatgt tgttcatcgg accttcatcg ggctgattat tcattctctc
    12721 tacaatccaa tcgagcaatt tttgatggaa atagctgtac tccaccgcag ggctgtcgat
    12781 gccgtaggta ttcagctcgc cattacgttt atggaaacaa gcgatgttgt aattatccag
    12841 cgtgccgcct ttgttgaagt tatctaacgg aagatgaatt gccgaaagcc ctttagacga
    12901 agccccccag tttttctttt cacagatttt attcgcattc ggacggcgga tagagcagtc
    12961 attgtaagcc gcaaaatggg ttggcgtgag cgaaaccact tgctgatctt ggtagccaat
    13021 ttcacaaatt aacgccactt caggctcaat ttgcagatta tcagcatcac tcgggaaatt
    13081 aatcgcagta tttgaaagcg gataggtgga taaaaactga taatccccca aattttccgc
    13141 cggcacataa aacgggaaaa tcgcctttgg ctgcactgct tccactgttt tcactttcgc
    13201 aaaatccgcc tcctctccgg cttgttctaa atgtccagca aaattgccgg ccacgcctaa
    13261 accgataaag tgttccataa tctactcctt aattggtaaa agttggataa aattttaccg
    13321 cttgtaacca aaaattgcga atgtttattt tg
//
LOCUS       DANMGB010000062        12701 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.062, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000062 DANMGB010000000
VERSION     DANMGB010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12701
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.062"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            95..1549
                     /locus_tag="PXG19_001326"
     CDS             95..1549
                     /locus_tag="PXG19_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6066624.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(1597..4194)
                     /gene="mutS"
                     /locus_tag="PXG19_001327"
     CDS             complement(1597..4194)
                     /gene="mutS"
                     /locus_tag="PXG19_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL6066625.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            4344..4907
                     /locus_tag="PXG19_001328"
     CDS             4344..4907
                     /locus_tag="PXG19_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL6066626.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            5081..5710
                     /locus_tag="PXG19_001329"
     CDS             5081..5710
                     /locus_tag="PXG19_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL6066627.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            5858..6487
                     /locus_tag="PXG19_001330"
     CDS             5858..6487
                     /locus_tag="PXG19_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6066628.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            6553..7068
                     /locus_tag="PXG19_001331"
     CDS             6553..7068
                     /locus_tag="PXG19_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL6066629.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(7116..8046)
                     /locus_tag="PXG19_001332"
                     /pseudo
     CDS             complement(7116..8046)
                     /locus_tag="PXG19_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(8105..8755)
                     /locus_tag="PXG19_001333"
     CDS             complement(8105..8755)
                     /locus_tag="PXG19_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL6066630.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            9084..10442
                     /gene="mnmE"
                     /locus_tag="PXG19_001334"
     CDS             9084..10442
                     /gene="mnmE"
                     /locus_tag="PXG19_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL6066631.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            10443..11708
                     /gene="tilS"
                     /locus_tag="PXG19_001335"
     CDS             10443..11708
                     /gene="tilS"
                     /locus_tag="PXG19_001335"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL6066632.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(11698..12591)
                     /gene="xerD"
                     /locus_tag="PXG19_001336"
     CDS             complement(11698..12591)
                     /gene="xerD"
                     /locus_tag="PXG19_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL6066633.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         3818 a         2949 c         2694 g         3240 t
ORIGIN      
        1 ttaacttaat gaaaaatata gcaaaacaac ctcaaaactc ttcactaaag gctattgaaa
       61 aatagccttt tctattcaaa taaaagatag ctttatgaaa aaaatagtct caacgctttt
      121 aatccttacc tcaaacctgg catttgcgga aaccacaccg gctcaacttc aagaaaaaat
      181 ggataaccag cgaatgcaga aaaacctaca tacattagaa aagcctgaac ctcaagccaa
      241 accacaagcg gttaatgcac aggctcaccg gcaatcgatc tctatttcaa gccaacagct
      301 gcttcaacag cctgagttgc tcaactcggc aatgctaact gcgttggtca ctaaccacac
      361 tgagaatgtt caattcttac tgcctattta tcaacaatta cccgccagta aacaaaacag
      421 cgaagttgta caatgggcgg aggcagttaa tgccaaagca aaacaaaatt attcagaggc
      481 aataaaaggc taccgtcagc tactggcaaa ataccctgaa aatcagccaa tccgtatgca
      541 attagcggtt gcattgtttg aaaatcggga aaatgaagcc gcagaggctc aattttataa
      601 gttacaagcg gacaaattac cgcaagaaat tgcaaatgcg gtcaatagct atttggaggc
      661 gattggcaag caagatcaat ggagttttca aggcggctta acctatttga atgacccgaa
      721 tatcaacaat gctccaaatg caggcacgac ctatggcaac tggactgcac cgaaaaaaga
      781 atccgcccaa ggggtcggct ttcactttga ggcggataaa aagtggtctt ggggcaatgg
      841 tttcttccac gagtttcgtt taaacggaaa cggcaaatat tactggaata acaaaaaata
      901 taacgaatat tcgctcagag aaagcctcgg cttgggttat caaaatgcaa aacaaaaaat
      961 caccttgttg ccgttttttg agcagatgtg gtatgccggt ggctcaagcc aaaccgaaag
     1021 caccaaacgc tactccaacg caggcggtgt gaatgcccgc tggcaatatt ggattactcc
     1081 acagtggcaa tctgcaatca gctacgaata tgcggaacag cgttacactc gccgccaaca
     1141 tttagacggc aattatcatt ttattgcccc gagcctctat ttttacccta acagccggca
     1201 atattggttt gtgggggcga attttaaccg caccagcccc cgtgatttag atgatagctt
     1261 tattcgccga ggtgtttcta ttggttgggg acaagagtgg aaaaacgggc tttcaaccca
     1321 attaagtgcc agctacgccc gcaaacaata ccgagcccca atgccgattt tccaaattac
     1381 acaacgtaac agtgaatatg gtgtgcaagc cagcatctgg cacagagcct tgcattttaa
     1441 gggtattacc cctcgcttaa cgtggcaata taacaaggta aaaagcaatc atagcttcta
     1501 tagttatgac aaaaaccgtg tctatattga gttttcacat acgttctaaa caaaaacgcc
     1561 ccttaaacgg ggcgatttct tagttatttt ttcaatttac cccaacaatt ttttcaagcg
     1621 atacaactcg tccaaagcct gtcttggggt aagttcatca ggctgaaggg ctttcagggc
     1681 tttttcaact tcattttcta ctacaagcgg ttgaattgct tcattttttt gcaaatcaaa
     1741 accatcggaa aacaacaaat ccgcctgtgg atgttcgttt gcttgtttgg tttggtggga
     1801 aatttcctcc aaatgtgcca aacgctgctt tgccagttga atcacttgct ttggcacacc
     1861 cgccaaggct gccaccgcca agccgtaact tttgctggcg gccccctctt gcaccgagtg
     1921 cataaacaca atactgtctt gatgttcacg cgcgtctaaa tgcacatttg ccaccccttt
     1981 gagctgattc ggcaagccgg taagttcaaa atagtgggtt gcaaacaaag tgagtgactg
     2041 ggttttcttc gccagccatt cggcacacgc ccacgccagt gataagccgt cataggtaga
     2101 agtgcctcgc ccgatttcat caatcagcac aaggctgttt tcggtggctt gatgcagaat
     2161 attcgccatt tcggtcattt ccaccataaa ggttgaacgc cctgaagcta aatcatcgct
     2221 tgccccaatt cgggtgaaaa tacggtcaat cgggccgatt tccgcacttt ctgccggcac
     2281 aaaactgccg atatacgcca tcaatgtaat gagggcaatt tgccgcatat aggtgctttt
     2341 accgcccata ttcgggccgg tcacaatcaa taaatgccgt tgggaattta aaaacaccgg
     2401 attggcaata aacggctcgg ttaaaacctg ctccaccacc gggtgtctgc cgcctttaat
     2461 attcaccatt cgcatcgggc taaagctcgg gcaaacatag cctaaactat cagctcgctc
     2521 ggcaaggttg gttaagacat caagttcaga cagcatcatc gccgctaatt gcaattcgcc
     2581 taagcgaggc attaacacat caaacagttc atcataaagc tgtttttcaa gggcaagcga
     2641 tgcccctttt gctttcagca ctttgtcttc gtaagttttc agctcaggga taatataccg
     2701 ctccgcattt ttgagcgttt ggcggcgaac atagtgaatc ggggctttgt gtgcttgccc
     2761 ttggctgatc tgaatgtaat agccgtgaac cgcattaaag ccgattttca gcgaatcaat
     2821 gccggtgctt tcacgttctc tgatctccaa attttccaga tattgcgttg ccccgtccga
     2881 aagttgccgc cattcgtcaa gctcggcatt ataaccttct gcaatcaccc caccatcacg
     2941 aatgagttgt ggtgggtttt cgataatcgc ccgctccagc aaatcgtgta acgggctgaa
     3001 atccgccagt tgagccaaaa gctgatcgat actagcggtc agattttgtg aattttttgc
     3061 aatttccggt aactgagcca atgcagtgcg tagtcgggtg aggtcacgag ggcgagccgt
     3121 acgcaacgcc actcgggcga gaatccgctc catatcgccg acttgttgta ataacggctg
     3181 taaatccgac attcgctcat attgtatcaa tgctgttatc gccttttgtc gggcttgtaa
     3241 tttaccacaa tctcgaatcg gctgatgaat ccaacgcttg agcagacggc tccccattgg
     3301 ggtcacacat ttatctaaca ccgccgccag cgtgttttcc gtgccacccg ctaagttttg
     3361 ggtcagctct aaattgcgac gagtagctgc atcgagcaaa atagtatcgc tatgttgtgc
     3421 caaatgaatt gcgttaatgt gcggtaaagc ggtgcgttgc gtttcttggg cataatgcaa
     3481 gacacagccg gcagcacaaa gtgccaccac cgctttttcc accccaaatc cggcaagtgt
     3541 ttgcgtgccg aattggcgat ttagcagctg aatcgccgtt accagctcaa attcccacac
     3601 cggacggcgg cgtaaccctt tgtaattcgt taaaattgag gcagcggaaa aatcttccgc
     3661 atacagaatt tctgccggtt gtacacgttg taactcggcg gatagagcct ctttgctagc
     3721 aagttcactg attaaaaacc gcccggaggt catatctagc gtagcaatcg caaatgtgcc
     3781 tttttcttcg taaactgccg ccaccaagtt atcttggcgt tcgggtaaca atgcctcatc
     3841 gctaactgtt cccggcgtaa caatccgtac cactttgcgt tctaccggcc cttttgaggt
     3901 tgctgggtcg ccaatctgtt cacaaattgc taccgattcc cccaacgcca ccaatttcgc
     3961 caaatacccc tccactgcgt gataaggcac acccgccatc ggaatcggct caccggcaga
     4021 ttgccctcgc ttggtgagcg aaatatccaa caatgctgcc gctcgtttcg catcatcata
     4081 aaacagctca taaaaatccc ccattcggta aaacaatagt atgtccggat tttgagcttt
     4141 gagttgcaaa tattgttgca tcattggcgt atgggtggag aaatcttgtg tcatcagtct
     4201 atttattgtg agaaatcatt gctgatagtt taacagattc agccaaggga taaaaacaag
     4261 cggtcatttt tcgctgaaaa tttgcaatgg tcagccgctg tttttttgtt acaatgcacc
     4321 aaatttttaa aacagaggtc agaatgttaa gaaaaatagt gctactttct acaggcttat
     4381 tattggcggc ttgtagcagc aatgaaccgc aacaaccgga agcattcccg ggcgaatttg
     4441 ccaatgccga ttatgtgctt tcggaagaaa atgctcaaaa atgggtaatt gccagcgaac
     4501 aggcaaaaca gtgtatctac cccaatttaa cccgtattca gcaagagcat ttttccaaag
     4561 aagattctta tattttctca caatatgtat ttttctatcc gcttgaagag attatcgggg
     4621 agcagtatgt aaaaatcatt caaaatgatg aaaaatcaat gggttacgct caatatttat
     4681 tcaaaaaact gaaaaataac gaagcggttg aagcgttacc gaaaaaacaa tgtgcgacct
     4741 tacgcaccaa tgcaaaaaat gatttggcag tggtaaaagg gcagtatcaa agcggtatga
     4801 tcgaagaaac caatagccaa gaagggaaat caggcgataa agttgccacc aatgataata
     4861 aattcttctt cgatattatc aaatggggca gtatgttact tctctagtga gcctcaatac
     4921 tcggttgttt taaccacaac cgagccattt atacctaccg attgaacttt tatctaaagc
     4981 ctcagtctta aaatacagtt tttttcaatt attttccctc ttttatattt aaggattttc
     5041 aataaaagca ttaaaaacat tattagcatt gggcgtggca atggctgttt cagctacttc
     5101 atttgcacaa accactcaac ctactgcggc tgaacaaatg aacgcagtta aagcctctgt
     5161 tgccgaaaaa gcaactgtgg ctaaagaagc aacaaaagag aaagcagcgg agttaaaagc
     5221 cggttctgcg gaaaaaatgg cgatagcaaa agccaaaacc gaatcattta aagattccgc
     5281 taaaaacaaa atggacgcag taaaagccac cacagcagaa aaaacggacg tgattaaagc
     5341 gaaagccgca tctgcaagcg acacaatgaa agtgaaagct caggaagcaa aagccgccac
     5401 cgcagagaaa gctgcaactg ctcatgaaac cttaaattca gccaaaaccg caaccgctga
     5461 aaaagcggcc tcaatgaaag cagctgcaac agaaaaaatg tcagcagtga aaaaatcaca
     5521 aaaagtgaat atcaacactg ccaacgaaga gcaattacaa tcgcttaccg gcattggtga
     5581 agcaaaagcc aaagcgattg tagaataccg caaaaaacac ggtaaaatca aaaatgcagc
     5641 agaactggcg aacattcccg gcattggcga tgcaaccatt gagaaagttg ctccatattt
     5701 aactttctaa tgttctgcaa gcggttattt tgttgcaaaa ttttgcagaa aaataaccgc
     5761 ttgttcattt cacaccttgt attcttaaat ttcaccccca ttaagtgaat cgtatttctt
     5821 tcaatacagt attcaataaa ctcaaaagga acagaaaatg gcattagatt tcaattcagt
     5881 tggattagat tcagtagaag caaaaggcgg ttacggcatc ggtttacaaa ttggtcagca
     5941 acttttaggc agcggaatgg acgtaaacgc agaaaccgtt gcccgtggta tttatgatgt
     6001 gttaaacaac aatgagccgg caatcgacat caatgaagtg accgctgcat tacaagaatt
     6061 aggtcagcgt gcggaagcgg ctcaagcaga agcattcaaa gcgattgatg ccgaaaacaa
     6121 agcgttcttg gaagagaata aaaaagcaaa cggtgtaatc gttaccgaca gcggtttaca
     6181 atatgaaatt ttaaccgaag gcacaggcga aaaaccgact gcgacttcaa ccgtgcgtgt
     6241 tcactacacc ggttcattaa ttgacggcac cgtgtttgac agctcggtaa aacgcggtca
     6301 gccggcagaa ttcccggtaa acggagtaat tcgtggttgg acagaagcat tgcaattaat
     6361 gccggttggc tcaaaatggc gtttaaccat tccacaagaa ttagcctacg gcgaacgtgg
     6421 tgcagaagca tcaattccac catttgcgac cttagtgttt gaagtggaat tgcttgatat
     6481 tctctaatca aactcaaata aaaaacctgt ggaggcattt cacaggtttt tgctatttaa
     6541 gataactata ttatgcagaa aaaatcactc atatctcgct tacttaaaaa tattttcctc
     6601 tacggcagcc tgtttatcat tattagcctg gtggttgatt ggtatcgctc gccctccgct
     6661 ccggcacaat ttgagcaaac cgtgcattat gatattcaac accagccgaa agtaatcgcc
     6721 caattaagcc acgagaagcc gatgctactc tatttttggg gaagttggtg ccactattgc
     6781 caagtggttt cgccaaatat ccaacaatta gcgaatgacg gcacggaagt tttaggtgtt
     6841 gccctgaaat ccggcgatga aaatgacgta caagcctatc tcaatgaaaa tggctacact
     6901 ttcgctactt tgaatgaccc aagcggtgat ttctctcgag gttggaacat tcaagccacc
     6961 ccaaccatct tgattatcaa agacggtaaa atcgcccacc acaccaccgg ctacactagc
     7021 tatttgagct taaaattcag actatggctg gcagacgtgt tgtattaaac gattcctttc
     7081 atttgcaaaa aaatccacta aatccgaccg cttgtttaca ccaaaaagac aagcggtact
     7141 aaattcattg tcatcattgt ggtgatcgat aaaatcagcc tcgatgagcc aaaaataaag
     7201 cctcggtttt tgccgttgtc gaatttcacc agtaaatttg ccattgctgt gagggcgtac
     7261 acttccacca ccgtaaaaat cacggtgtaa atataggcag cggtcagagt tgcgactttt
     7321 accgcaataa accaaggggc aataatcgcc accgctaata acggcgaaat ccaaattaat
     7381 tgctgtttgg tgaggttgat tttacgagaa aaagtcgatt gcaaactgac ggttaaaaca
     7441 ccgttgatga ataacgcaat cggcgaatgc tccggtgcgt gcaggacatt gtcgaataaa
     7501 tacggaaaaa tcactcagcg gcacaaatag cattaagtga gcgaacaaaa actctttgtt
     7561 gatgatttcc ttaatttgtg cgaaacgaaa tttcacgccg ccattcacgc cttccaccga
     7621 ataaaacggc ttgaccataa acgcaaacaa gccggcttcc aaaataaagc agatccaaat
     7681 cagcgtttca atcatctcaa acctaataaa cggaataata atcagcgggg cgagcattga
     7741 agacatactg gtgactttta gatatttgcc ttgtaaacgg gttttagcag catattcatc
     7801 gccggcaatc gccagtaaac aggctctggc attagtgccg aataagcaac tccccaaccc
     7861 aaagcaagtg gttgccaaca ataaaatgag gtaattatcc gctgctaaaa acagcatata
     7921 ggcaaccaca tctaataaac agcccaataa catcattttt gccaagccgt agcgatcccc
     7981 ccaaatgccg gctaaaattg ccaatgcctg attacaaaac aacagcaatg aaaggaaaaa
     8041 agcgatttgg gcgttatcta gccctttctc ttttaaataa aagaaaaggg gctgtcctag
     8101 ataactaacc taaactaccc ttaaccaatt gttttaaaaa ggatatttga gattttaagt
     8161 cactgtgatt aaaacgccat tcgcattctt tcaaatacag ctcaaaatgc actttgggaa
     8221 tgccgttaaa cttacgcaaa tggcgttttg cttggctccc aaaattctca attccattaa
     8281 tgtgattttg attttcagcg aagtgtgtgc tgtgattaat gcgaaaatgg ttaaattcac
     8341 tcacatcaag cacatcataa cttcgataga aatcggtgta aacaatacta tcgggtttca
     8401 ccttttcccg aataatcggc aaaagtgtgg caaattgcgt gtttggtact accacggtat
     8461 aaacctttcc gtcccgcttt aaaagcccga acacggcggt tttgcctgct gcaccacgtc
     8521 cacgtttacc tttacgatga ccgccgaaat aactctcatc aacctcaatt tctccctcaa
     8581 acatttccaa atgagggcta tgttgataga taagcaaccg caagcgatgg aagtaatacg
     8641 ccgccgtgtt tttgtttaca ttgaccaact cagatgctgt tcgggctgtt acccctgcaa
     8701 caaactgctc aatgagtttg ttttgtttgt actgacttag acgacttttt ctcatttggg
     8761 tatcttaacc taaatggagt ttttagtcgt tatctaggac agccccaaag aaaaacacgc
     8821 tttgcattga aaaaaaggcg gtggtggaaa taaaacggcg taggagtaat agtttttcta
     8881 aagacattca gaatggttga attggttaaa taaagagcgg ttattctacc ttttaagtca
     8941 accccaatca atcggctttt gttttacctt tggcgtgggt ttcggtatga taagcgatat
     9001 gtagtggcgg gtcctgtgcc cgcctaaata ccaatgataa cttgcgggcg agcacaggac
     9061 tcgcccctac gataaacaag aaaatgaaag acaccattgt tgctcaagca acaccgattg
     9121 gcagaggcgg tgtggggatt ctgcgagttt ccggtccgct tgccgaaacc gttgctcaag
     9181 ccgtattagg caaaacattg ccaccccgta tcgcaaatta tttgccgttt aaagacgaag
     9241 atggcactgt gttggatcaa ggcatcgcct tattttttaa agctcccaac tcctttaccg
     9301 gcgaagatgt gcttgaactt caaggacacg gtgggcaggt tattttagat ttactgctca
     9361 aacgcatttt acaagttaag gggctacgca ttgcccgagc aggtgaattt tccgaacagg
     9421 catttttaaa cgataagctc gaccttgccc aagctgaagc gattgcggat ttaatcgacg
     9481 ccaccagcga gcaagccgct cgttcagccc tgaaatcact acagggtgaa ttttctaata
     9541 aaatcaatgc gttagttgat tcagtaattt atttacgcac ttatgtggaa gcggcgattg
     9601 acttccccga tgaggaaatt gactttctgg cagacggtaa aatcgaggca aaattaaatg
     9661 agattatcgc tcaattagac ggtgttcgcc gtgaagcgaa acaaggctcg attctgcgtg
     9721 aaggaatgaa agtagtgatc gccggtcgcc cgaatgcagg gaaatcaagc ttgcttaacg
     9781 ccttagccgg acgagaggcg gcgattgtaa ccaatattgc tggcacaacc cgtgatgtgt
     9841 tgcgtgaaca tattcacatt gacggaatgc cgttgcatat tatcgacacc gccggtctcc
     9901 gtgatgccag tgatgaggtg gaacgtatcg gcattcagcg tgcttgggaa gaaatcgccc
     9961 aagccgacca cgttttatta atgattgaca gcaccgagca acaagccgat cagttccgac
    10021 aagagtgggc ggaatttcta gccaaactgc cggcaaatat gcctgtgacc gtaattcgca
    10081 acaaagtcga tttatccggc gagcaggaag gcttaattca ggtggacgat ttcacgatga
    10141 ttcgcctctc tgcccaaacc aaagtcggcg ttgatttatt gcgtgaacac ttgaagaaat
    10201 caatgggcta ccaaagttct acggaaggcg gattcttggc tcgccgccgt catctgcaag
    10261 cattggaaac cgctgccgag catttagagc gagggcatat ccagcttact caattcttag
    10321 ccggcgaatt gttagcggaa gagttgcgta tggtgcaaaa tgccttaagt gaaattaccg
    10381 gccagttcac ctctgatgac ttattaggca acattttcag ctcattttgc atcggtaaat
    10441 aaatggcact ttttaaccgc tttcaaaccc agtgtgcaac gcatttgccg aaccaaaccg
    10501 cctttttaat cggcttaagc ggtggggtgg attcggtggt actactccac ctttttgccc
    10561 gcacctcatt tcacgttagg gcaatttatg tccaccacgg gctaagccca aatgcggacg
    10621 actgggcagc cttttgcgaa caatattgca agcggttaaa tattcccttt attttacaaa
    10681 aggtcagagt ggatagctca aacggcgttg aaaacggggc gagagaagct cgttaccaag
    10741 ccattcaaca acagcttaag cccaatgaag tgttcgccac cgcccaccat ttagatgacc
    10801 aagccgaaac ttttttgctc gccctcaagc gaggcagtgg agtcaaagga ttatcggcga
    10861 tgcaagcggt cacttttttg caaaatttta ccgtttttcg accgctactc acttttacta
    10921 agtcagattt gatgggttat gccgttcaac atcagctagg ttggattgag gacgaaagca
    10981 atgccgataa ccgttacgac cgtaatttcc ttcgcaatag catcttgcca ctactcaatc
    11041 aacgttggca gcacttcagc caaatggttg cccgttccgc tcagcattgt gcagaacagc
    11101 aagccttgat agaagagcta ttaagcaatg aactcaagtc aagaacaggg gaaaaacaac
    11161 aactcaacat taacggcttt gggcaatttt cacttgccaa gcaacagcaa cttagccgcc
    11221 tttggctgga acaaaacgga gtgagaatgc caagccaagc ccagctacaa gcggtcattt
    11281 ctgaactgat ttttgcaaaa gccgataaaa acccacaggt taaagtcggc gaaaatatta
    11341 tcagacgcta tcaacaagct atttacgtta ccgaagagat cgccgacatt ccgccgtttg
    11401 aggtagtact tcccacagaa accaaagtgg aattacccta tcagctcggt actattattc
    11461 gccaacaaca agagatcatt tgcaaaaaaa acgggaaaaa tcaccgcttg caactgcccc
    11521 aagagctggc tcaatcaact atttctatta aaatcgggca actaggcaaa gtaaaatgct
    11581 acggcaaggc tcaacgggaa gaaatgaaaa agatttggca aaatcacggc atacctgttt
    11641 gggaacgcaa ccgtacaccg ctgatttttt ggcaagacga attagttggc ctattaccta
    11701 tcctctaggg tgaaattgct gatgaagcga tttcaaacgg gcttttgcca cttgagtgta
    11761 aatctgggtg gtcgataaat cactatgccc cagcaacatc tgtaccactc gcaaatcagc
    11821 cccatgattg accaaatggg tcgcaaaggc gtggcgaagc acgtgaggcg agagtttatc
    11881 tgcatcaata cctgcaagca cggcatagtg cttaatccga tgccaaaacg tctgccttgt
    11941 catctgctga cctcgccggc tcggaaatac aacatcagac tgctgattat tcagcaaaat
    12001 agggcgaccg tactggaaaa actcctgtat ccaataattc gcctcctcgc ccaatggcac
    12061 taaccgctct ttatcccctt taccgataat tctcaccacc ccttgtttga ggctgatatt
    12121 atccatcgaa agcgacacca gctccgttac ccgcagaccg gtggcataca gcagctccag
    12181 cattgcttta tcccgtaact ctatcggatc taacgtattc ggggcatcta gcaaatccat
    12241 tacctgatct tcacttaagg atttgggtaa agaagcaccc cgtttagggg aagaaagggt
    12301 taaagtcggg tcatcttggc gataatgctc aaggcataaa aaacggaaaa atttccttaa
    12361 acaactcaac attctggcag agcttgtcgc cttatagcct tgctccaaac gctcgccgag
    12421 aaaaccttgt aagtcgatat gatcgagaga cagaaatgct ttaggttcag aaaaataatc
    12481 ggaaaaacgc tctaagtcag aacgataaga ggcaacggta ttttcagaca aaccgtgttc
    12541 ttgccatagt gtatcgagaa attgttcaat aatagggtca agctcagcca tacaagcggg
    12601 tatattttca ggaaattttg caaattttaa cagaattaaa tctataaaaa tacaaaagcg
    12661 atagaaacga aaaaaccgat tagcttatgc taatcggttt a
//
LOCUS       DANMGB010000063        12635 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.063, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000063 DANMGB010000000
VERSION     DANMGB010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12635
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.063"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(145..1278)
                     /locus_tag="PXG19_001337"
     CDS             complement(145..1278)
                     /locus_tag="PXG19_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL6066634.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1295..2107)
                     /gene="dapB"
                     /locus_tag="PXG19_001338"
     CDS             complement(1295..2107)
                     /gene="dapB"
                     /locus_tag="PXG19_001338"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL6066635.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2158..2535)
                     /locus_tag="PXG19_001339"
     CDS             complement(2158..2535)
                     /locus_tag="PXG19_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066636.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2525..2998)
                     /locus_tag="PXG19_001340"
     CDS             complement(2525..2998)
                     /locus_tag="PXG19_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066637.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3066..4154)
                     /gene="rlmM"
                     /locus_tag="PXG19_001341"
     CDS             complement(3066..4154)
                     /gene="rlmM"
                     /locus_tag="PXG19_001341"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL6066638.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4154..4546)
                     /locus_tag="PXG19_001342"
     CDS             complement(4154..4546)
                     /locus_tag="PXG19_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL6066639.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4653..6054)
                     /locus_tag="PXG19_001343"
                     /pseudo
     CDS             complement(4653..6054)
                     /locus_tag="PXG19_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6209..8566)
                     /locus_tag="PXG19_001344"
     CDS             complement(6209..8566)
                     /locus_tag="PXG19_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL6066640.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8702..11308)
                     /gene="acnB"
                     /locus_tag="PXG19_001345"
     CDS             complement(8702..11308)
                     /gene="acnB"
                     /locus_tag="PXG19_001345"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL6066641.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11328..12575)
                     /gene="icd"
                     /locus_tag="PXG19_001346"
     CDS             complement(11328..12575)
                     /gene="icd"
                     /locus_tag="PXG19_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL6066642.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
BASE COUNT         3581 a         2945 c         2425 g         3684 t
ORIGIN      
        1 tattatgtta aatagatagt taaaataaca catttaatta aatcttttcg tgtttctctc
       61 ctcctttatt aaaaaagaaa acggtcagat tggtaaaatc tatacctaat atgaccgctt
      121 gtgaatacaa aaaaattact tcaattactt caactgttta aaggcttgca gtaaatcagc
      181 tttaatatct tcaacgtgtt ctaaaccaac ggaaaaacgc agtaaattat tcgtaatgcc
      241 tcgtgtaata cgttctgctt ccggaatatc catatgggtt tgtgttgcag gataagtaat
      301 aaaactttct gcaccgccta aactttccgc aaaggtaatc aatttaattg ccttgagaaa
      361 tttcgctacc cactcttctt tttgtaaacg gaaagataac ataccacttt tgcctgaata
      421 taacacgctg tcaatttcag gttgctctgc taagaattta gccagttcgg tggcattaga
      481 ctgatggcgt tccattcgta atgccaaggt tttcatacca cgcacggcaa ggtaagaatc
      541 aaatggcgac agcactgcac cggcacagtt ttggaaatag aataaacgct cggtcaaatt
      601 ctgcccgttt actttggtag catcagaatc tttcgcaaca attaagccgg ctaacacatc
      661 attatgcccc gaaagatact tggtcgcact gtgaatcaca atatcagctc cgtgctcaat
      721 cggacggaat aacgctgggg ttaagaacgt attatcaacg atcaacatta aattgtgttt
      781 tttcgcaatt ttagcaatgg cagcaacgtc gcactcctcc atcaatggat ttgacggcgt
      841 ttccacgaaa atcgccttag tattcggtgt aatagctgct tcaatcgctg ctaaatccgc
      901 tgtattaaca taaaccggct ttaatgtgcc gtgatttttg tggctaaaat caaacaagcg
      961 gtaagaacca ccataaacat cgctggaaat aatccattca tcaggtgctt taaataatga
     1021 cattactagc tgaatcgctg ccattccaga tgccatcgca aaaccggcat caccgccttc
     1081 taaatccgca atcccctgct ctaatacagc tcgagttggg tttttggtac gggtgtaatc
     1141 ccagccggta gattcgccta agccatcacg cccgtaagca gttgataaga taatcggcat
     1201 tgccaccgcc cctgtacgag gatcagttct gttaccgatt tgcactaatg tggtttcaat
     1261 attattgaat tttgtcattg ttattatcct tcaattacag attatttaga tccaatacgt
     1321 ctgtcatatc aaacaagcca ttttgtttgc catttaacca ttttgcagca cgcactgcgc
     1381 cattggcaaa cgtcattcga ctagaggctt tatgtgcgat ttcgacacgt tcgccttcat
     1441 cagcgaacca tacactatgc tcccctacaa catcaccggc acgaatagta gcaaagccga
     1501 tttcatcacg tttgcgttcg cctgtaatac cgttacgttc aaatacgcca tgagttttca
     1561 agtcacgccc aagagttttg gcaatatgtt ctcccattga taaagccgta cctgatggtg
     1621 catcaacttt atggcgatgg tgtgcctcaa tcacttcaat atcacaataa tcgcccatta
     1681 cttttgctgc tttttcgagc agtttaaaca ccagattcac cccaacgctg tagtttgagg
     1741 caaaaacgat accgattttt tcactcgctg ctttgattgc agctttacct gcatcatcaa
     1801 aaccggttgt gccaatcacc atttgtttat gatgagccac acaaatatcc aaatgttcta
     1861 gcgtgccttc agggcgagta aaatcaatta gtaaatcaaa acctgctaca ttttgggcga
     1921 catcatcaga aatcaccaca cctaatgtac caaccccggc tacttcacca gcatcactac
     1981 ctactaatga tgaaccttta cgctcaaaag cagaccctaa ttctacgcct tgtgcattat
     2041 ggacggcttg aattaattga cgccccattc gcccaccggc accgacgatt ccaattttta
     2101 atgtcatatt tgttcttcct ttttatattt gttttttaca agcggttaca tttttaatta
     2161 attttgcaaa tagctttctg atggcaattt aaaaggtggg tgagaagtaa aatcaacaat
     2221 ttgaataaag ttttcacctt tcacataatg taaaatatac tcagaagtat aattaccaaa
     2281 tccttgactg gtatcatatt ctggaatgcc gatatgataa tgccataaag aatatttttg
     2341 tgctttagcc accttctctg cccaataagg atcattcgtt ggcacatcat cagaactttt
     2401 atttcgacca gctagatttt ccaatccata aatttcaacg tgttgtttaa actgcaggat
     2461 tttgactaga tctttttcag gcaaatattg caattcggct gaaatttttg taccaaataa
     2521 aactttaatg cccatttgca acacctttca accagtttct aaattcatta acattcgtta
     2581 tatctttagg cacttcgtga aaagtatcat ttaaccgctc tttcattcgc tctaagtcaa
     2641 aattaaatgc ggttgcttga gagagttgct gttcaatttt gcgaatattg gacttcatat
     2701 tatccaatat agccattgtc cttgagccat cagtaaaata ctgttgggta tcgaaaatca
     2761 ccaccttatt ttgatttagg tattttttga aatcgtttaa atcaatttca gcccaaaagt
     2821 ttggattttt ttcgatagtt tcaatacagg caattaataa ttgatttgcc attgtaatac
     2881 gaaaatttaa caatgagatt tgctgctctg ttgcaggttt atcatcagct gcgaaatcaa
     2941 atgccggata aatcactgca agcgtgtcag ccatagataa gggtaaattt ttcatcatct
     3001 ctccttacgg aagaagttgt cattatctac tggattactt aaaaaaacaa cttattcatt
     3061 ttatgctatt tttgccccat caccgcaata tgtaccgtaa tttcctcacg gtcgtggtag
     3121 aggtgtttag cttgcatttt gaaccaaaac ccgtgtttcg ttagctcttc ttccaagaaa
     3181 ttgaggcata gttgcacttc ttgataacgt tttttcatcg gcagttttag gttgaaaatc
     3241 gtttctcgac accaaccgtt agtcagccat tttgcaatga gtttcgagat acgaatcggc
     3301 tgctctacca tatcacaaac cagccaatcg atttgtttac gcttaggcgg ttggaattta
     3361 aacccatctt cagggcaatg ctcaattctt ccggtttcgt gtaaacttgc tgccattttg
     3421 ccgtgatcga ctgcatagac aaaaacacca cgtttgacta attgataagt ccaaccaccc
     3481 ggacaagccc caagatcgac ccctaccatc gtatcattaa agcgtttttt ctcctctgct
     3541 tgcggaataa aagttaaaat cgcctcttct aatttaagcg ttgagcgact aggtgcctca
     3601 gccgggaatt ttaaacgggg aatccccata aaaaacggcg atttattatg gttgtacgca
     3661 tagcccacat agcaagctcc cggacgagta aataaaatat gcaagctcac actaccctgc
     3721 atattttccg atttccccaa ccaaccttgt tttttcaatg ccgaccgtaa tggcacagta
     3781 aatttacgac agaaagttaa taattctttc gcttcgttgg tatccggtgt ttcgacaaat
     3841 acatcagaac tttggcgagg attaagttcg gcatattggg ctaaaatcgg cgaaattcga
     3901 tcattttcag acagattttg caacaaatcc ccaacaacca acatttggcg aacaaaaata
     3961 agctgttcaa actttaacgc ttgggctaat cgatctgctt cccctgcttg atagcactca
     4021 aaaatcacat agccactatt ttctttaagg ttggcaaagc caaaaatgcc ctgttgtgca
     4081 gctttatccg tgatttcgcc tgctacctct ttttcaaacc ctgctcggca atataaggct
     4141 aatttattga acattaggct tttctcacac tgatataaat taacgcaatc caaccaagca
     4201 taaagcagag accaccaata ggcgtaagcc aatgaatagt cggcacattt aacgccagta
     4261 agtacaggtt gccactaaaa agcagaatgc ctaacgccca attgcttccg atgatgttaa
     4321 aggctttggc tctacaaacg ggtggatttt gcccaaaatt tgcaatttgg aataaaccta
     4381 aagctaaaat ggcaagggtg tgaaacattt gatatttaat ccccgtctca atccagccta
     4441 aggctttagg cgataattga gccgataatg cgtggctggc tatcgcccca aatgccacag
     4501 taaataagcc gctgaatgcg gcaattgcta caaatttgtt tttcataagt tgaagatagg
     4561 tatgatgtta gatggcttac tatatcatat tatcgaaacc aacaagcggt gaaattttgc
     4621 aaaaaaatta caaaaaatca ccgtttgtat gcttaatggt tcaagataat atccacatct
     4681 tccgatttat cgtgaacccc aaatctatct actaaggttt tgctggcctc atttaatccg
     4741 ataatttcta cctcaacatc actttttcga tatttcaaca caactttatc taacgctgaa
     4801 actgccgtta cgtcccaaaa gtgagcgtgg gttaaatcaa tgtggacttt tttcagttct
     4861 gaacgggtaa aatcaaattg tgcgataaaa tcatcagatg aggcaaaaaa tacttgcccg
     4921 ataacatcat aacgcaattc ctctttctct atagcacttg ttttaaccgc catataacgt
     4981 ccaattttat tcgcaaagaa taatgccgag agcaacacgc cggaaaatac accaagggct
     5041 aagttatgtg tataaaccac aattgcaaca gtgactaaca tcactacatt aaagccgatt
     5101 gggtgcgttt ttagctcttt taaggaatgc caattaaagg tgccgataga gaccataatc
     5161 atcactgcaa ctaatgcagc catcggaatc actctcaaaa tatcgctcaa aaagaccaca
     5221 aaaatcagta ataatattgg caatgccctg ccctttacat tcacggtttt tatcgctgtc
     5281 tgtctctgtc atttcatcaa caatcgttgc cgtcattaaa gattccaata accctactgc
     5341 ggccaagctg aaagaataag gcaaaataat ccataaggtg tctaaattaa gcggaatatc
     5401 gggtaataaa aacaccggta aggtatcggg taattgcccc atatccccaa cggtacgaac
     5461 atcaatgcct tgccataatg tgaaaagtgt taaagcaata atggtcacta atggtgaggg
     5521 aatgattttt ccaatcaccg gtacataagg aaaaagataa atgatagcaa gccctgctac
     5581 caccagtgca taagtatgcc aagttgtatt ttgtaactca ggtagttgtg ccataaaaat
     5641 taaaatggca agtgcattaa caaacccaat cactacggct cgtgccacaa accgcataag
     5701 cgagccgagt tttaaccaac cggcaataat ttgcaacacg cctgttaata aggtggccgc
     5761 tagcatatat tgtaaaccgt gatccctcac taagcctgct aataccagag ccattgcacc
     5821 ggttgctgca gaaatcatcg ccggtctgcc gcccacaaaa ctgataatta ctgcaataca
     5881 aaatgaggca tataaaccaa tttgtggatc aacccctgca ataattgaaa atgctatggc
     5941 ttctggaatt aacgccaaag ccaccactaa accagagaga acatcacctc gtacatttga
     6001 aaaccattgt tgtttaatta ccgtaggcga aaattgctga aataaagttg tcattattac
     6061 ccttaaataa aaagaaaagc cgagcaaagt cggctaaaaa tgaggcgaga gagtagcaaa
     6121 ttagtgaaaa gtcgtcaaat aaacaagcgg tcttctttcg ctcttttttt gcaaaaaata
     6181 gtagaaaaat gaccgcttgg attaattgct attcactaaa aaaaggggct ttaaacaccg
     6241 tcacttcagg tgcatctccc acatattttt ccacttgaac cgtggtagtg ttcggtgcat
     6301 tgccctgccc gagttttgat gaaccctcat tacgggttag cacattcggg ttgccgtttt
     6361 tgcatagtgg agtatctgtt ttgcctaaat cttgcgggtc ataccaacca ccttcgtata
     6421 acgctactgt gccttgaatg atgccatcag tcaccactgc tcctgccaac acctgccctc
     6481 gcttgttaaa aattcgcaca atatcaccgc ttgtaatgcc tctgtcagcg gcatcttttg
     6541 tgtgaattag cattggttct ctgccgttta cctcgtaata ttgacgtaat gaggagtaag
     6601 caagctggct gtgtaaacgg tatttaatat gcggtgtaac taatgccaac ggctcggctt
     6661 cgttggtttt gcctgaatat tcgtgatgtt caaaccaagt cgggtgtcct ttacaatctt
     6721 cataattcat cttggcaatg gtttcggaga aaatctcaat tttgcctgat ggcgttgcca
     6781 atttgtgttt aatcggatca gtacgataat cttgatagcg aacgaaagta ttattttgat
     6841 gttctgcctc aaagctcaac actttatttt ccgcccaaaa tgcctcgaaa tccagcaatg
     6901 gcgtattagc tttttccccc gcctcaaagg caacttggta aaattcctta agccattcca
     6961 tttcgctttt gccttcggta aatgcttgtt ctttaccggc tcgtttcgct aattcggcaa
     7021 aaatatcgta atcattcttc gcctcaaatt gcggttcaac cacctgtttc atcgggataa
     7081 tatgttttgc tacataatca ccggcaacgg tgagatcgtt tcgctcgtag ctggtggttg
     7141 cgggcaatac aatatctgcc attcgagcgg tcggtgtcca gtaacattca ttgacgatca
     7201 tcgtttccgg ctgttgccac gctttcacta aatagttggt atccgggtgg tgagcaaacg
     7261 gattaccccc cgcccaatag actaatttga tgttcgggta atgtaatgtt tgcccgttgt
     7321 aatcataagg ctgattcggt ttgagcaacg catcggcaat tcgagacacc gggaaaaacg
     7381 gcatatcggg gttaggttta cctgcattga ttgcccctaa acgaacaccg gaattaacat
     7441 ttagcccatt ggtagaataa cgataattta agccgaaacc gccgcccggc aagccaattt
     7501 gcccgagcat agcggcaaga gtcactaacg cccagtggct ttgctccccg tgttgcaggc
     7561 gttgcaagcc ccagccggac atcaacattg tgcggtgagt aacaaaatca tttgctaagg
     7621 ttttaatcac ctcctccgga atgtcacaaa tttggctcgc ccactctgct gttttaggta
     7681 aattatctgc ttttcctaac acataatcag caaattgctc gaaaccaaca gtatatttag
     7741 ttaagaagtc gtgatcgtgc ttgttttcag taataagggt gtgggcgatc cctaaaatca
     7801 gtgcaacatc cgtgccggta ttaataggca accactctgc ctctaaaaat tgacaggtct
     7861 cgcttttcac cgggtcgata caaataatcc gtttaccgct tgcttttaat ttggcgagat
     7921 aatcaatccc ctccggttcg gcagaggtcc acgcaatgcg aagtgtattc agtggattag
     7981 acgaccaaat taccaataat tctgtgcttt ctacaattgt gtgccaactg gtttgttgag
     8041 catacacctc aatattgcct aatacataag gcataatcac ttgcaccgca ccggtggaat
     8101 aatcgccttt agtattggta aagccgcctg tgacgtttaa ataacgttgc aaaagcgtgc
     8161 gagaggcgtg cagtgaacca ctgctatacc agccgtaaga accgccgaaa atggattcgc
     8221 tgccatattg ctctcttacc cgttggattt cgccggaaac cagctcaaag gctttgtccc
     8281 aagagattct cacccactta tctcgccctc gcaaagtggt gtctttattc ccttccaagt
     8341 agcctttccg caccatcgga tatttcaccc gaaccgggct atagagctga tccgccacca
     8401 catcttgcaa ttcgttttgg tgatttttcg ctaaactgcc ctctgatttc accacttttc
     8461 cgttttccac cgttacattt aatgcacccc agtgggcggc ggtggtaatg gtatttttcg
     8521 gtttatccaa aaagacaaac ttcccttttt ctaatgctgt gttcatttaa attaatgcct
     8581 tttctgttac aaaattgaga ggaatttact ggattaagcc aaaagttgca accacaagcg
     8641 gttgttttta gccaaaaatt tgcaaaacaa aacccaccta aaaaggtggg cttcaaggaa
     8701 gttaaacggc aacttgaacg attacattgt ccgctttttt cacataacta ttgatttggt
     8761 caaagttcat atagcggtaa atatcgtcct tatctttctg caagttattc atatagtcta
     8821 ggtactcttg cggtgtcggc aatttaccca ataacgcaga aactgcggct aattctgctg
     8881 aggctaaata cacatttgcc ccttgcccta aacggttcgg gaagtttcgg gtagaggtag
     8941 aaaccacatt agcattattt gccactcggg cttggttacc catacagaga gaacagcccg
     9001 gcatctctac ccttgctccg cttttgccgt aaatgctgta atagccctct tcggtcagca
     9061 agcctgcgtc cattttagtc ggcggagcaa tccataattt agtcggcaat tcgccctgtg
     9121 cttggcttaa cagtttacct gccgcacgga aatgcccgat attagtcata caagaaccaa
     9181 taaagacttc atcaatttta tcgccctgta cttgagaaag caggcgagca tcgtcagggt
     9241 cattcggtac gcacacaatc ggctctttga tttcatctaa gttgatctca atcactgcgg
     9301 catactccgc attttcgtct gcctctaaaa gctccggatt atccaaccac gcttgcatat
     9361 tggcgatacg gcgttctagc gtgcgtttat cgtcatagcc ttccgcaatc atccatttta
     9421 aaagcgtaat attagaattc agatactcga taatcggctc tttgttgagc ttgatggtac
     9481 aggctgcagc agagcgttca gcagaagcat cagaaagctc gaaggcttgt tcgattttca
     9541 gatcttccaa cccttcaatt tctaaaattc gaccggagaa aatatttttc ttaccttttt
     9601 tctccaccgt cagcaagcct tgctgaatgg cataatacgg aatagcgtga accagatccc
     9661 gtaaggtaat gcccggttgc attgtgccgg aaaaacgcac caagaccgat tccggcatat
     9721 ctaacggcat cacccctgtt gccgcagcaa aggcaactaa gcccgaaccg gcagggaatg
     9781 aaatcccgat tgggaaacgg gtgtgggaat cgccgcctgt accgacagta tccggcaata
     9841 acatacggtt tagccaagag tgaatcacgc catcacccgg gcgaagtgac acaccgccac
     9901 ggttcataat aaaatcaggc aaagtgtggt gggtaattac gtccaccggt ttcgggtaag
     9961 cggcagtatg gcagaacgat tgcatcacaa gatctgccga gaagcctaaa caggctaaat
    10021 ctttcagctc atctcttgtc attggtcctg tggtatcttg tgaaccgaca gacgtcattc
    10081 gaggctcgca atattgcccc ggtcgaacgc cttctacgcc acaagctcgc cctaccattt
    10141 tttgagcaag ggtgtagcct ttgttactct ctgaaaccga ctgcggttta ataaatacat
    10201 cactttcagg caagccaagt gctactctgg ctttatgggt caaaccacgt ccgataatca
    10261 gcggaattcg cccgcctgca cgcacttcat caagcaatac ttcggttttt agctcaaatt
    10321 cggctaagac ttcatcggag ttgtgtttgc aaattttgcc tgcataaggg taaatgtcga
    10381 ttacatcgcc catattcagg ttggttacat ccacttcgat cggtaaagaa ccggcatctt
    10441 ctaatgtgtt aaagaaaatc ggggcaattt taccgcctaa caccacccca ccggcacgtt
    10501 tgtttggaat gtaaggaata tcttccccca taaaccaaag cacggagttg gttgcggatt
    10561 tacgagaaga gccggtgccg actacatcac cgacataggc taacgggaaa cctttttctt
    10621 ttaatgcttc cagttgctta atcgggccgg tatgaccgtt ttcatcgggg aaaataccgt
    10681 cacgttcatt tttcagcatt gctaatgcgt gaagtggaat atcagggcga gaccaagcgt
    10741 cttgagccgg ggaaagatca tcggtattgg tttcgcctgt gactttaaat accgttaccg
    10801 ttaatttttc ggcaagtttc gggcgagagg taaaccaatc ggcattcgcc caagattcca
    10861 atacttgttg tgcaaacgga ttaccctgat ctgcccgttc ttttacatcg tggaaattat
    10921 caaacatcaa taatgtttta gataaggctt ctaccgcaat cggtgcaagc tcagggttat
    10981 ccaacgcaga caataaggtt tcaatgttat aaccaccttg cattgtgccg agtaatttca
    11041 ctgcgtgagc aggcgaaatg agcggcgatg tggcaacccc tttggtaata tcggctaaaa
    11101 aggcggcttt aacataagcg gcttcatcaa cacctgccgg aatacgattg gtaaaaagat
    11161 ccaataaaaa gaccgcttgt tcagccggtg ggtttttcaa taattcaacc agttgagccg
    11221 tttgttccgc agaaagtggc tgaggcacaa cacccagtgc cgcacgttca tcaacctgtt
    11281 gttgataatt ttctataaaa ttttccatca tcattccctc tccaacttta catattggca
    11341 ataatgtctt gtgcaaattc tgaggttgag cgtagagtta ccccctccag catttccgca
    11401 aaatcaaagg tgacagtttt attggcaatg gttttagaca ccgcttttac cactaaatca
    11461 gccgcttcaa cccaacctaa atggcgtaac atcatttccc cacttaaaat taatgaccca
    11521 ggattgcctt tattttgccc tgcaatttta ggggctgtgc cgtgtgtggc ttcaaaaata
    11581 gccgcttcaa acccaatatt cgctcccggt gaaataccga ttccgcctac ttgtgcggct
    11641 aaagcatcag aaatatagtc gccgtttagg ttcagtgtag caatcacatc atattcggtt
    11701 gggtgtaaca agatttcttg taaaaaggca tcggcaatgc tgtcttttat aatgatttcc
    11761 tcaccggttt tcggattagt caagctcatc caagggcctt tatcaattaa ttttgcccca
    11821 aattcttccg caacttggta gccccactct ttaaatgctc cttcggtaaa tttcataatg
    11881 ttacctttat gcacaagcgt gagcgattta cggttgttat caattacata ttgcaatgca
    11941 gcacgcacca agcgttgtgt gccttgctta gaaaccggct taattccgat accgcaatct
    12001 tcggtaaagc ggattttttt cacgcccatc tcttgttgta aaaattcgat cactttattg
    12061 gcttcaggcg aaccggcaac ccattctaca ccggcataaa tatcttccga gttttcacgg
    12121 aaaatcacca tatccaccag ctcagggtgt ttaaccgggc ttggcgtacc gtcataataa
    12181 cgaattgggc gtaagcagtt gtataaatct aatccttgac gcatcgccac atttaaagaa
    12241 cgaataccgc cacccaccgg tgtcattaaa ggacctttaa tcgccacgtg atattggcgg
    12301 ataagctcta aggtttcatc cggcaaccaa gtgttctcac catataattt attcgccttt
    12361 tcgcctgcgt aaatttccat ccaagcaatt tttcgcttgc cttgataggc tttttctacc
    12421 gccgcatcta gcactgcttt cattgcagga gtaacatcaa caccgatgcc gtcaccttca
    12481 ataaatggaa taatcggatt atccggaact tgtaaagaac cgtcttggtt cagttgaata
    12541 gtttcgcctt gtggaatttg gacttgtgtt tgcattgatt ttacccccgt aatgacgaaa
    12601 aagtagtgac gaaaaatgaa tgttgacaat cagcc
//
LOCUS       DANMGB010000064        12587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.064, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000064 DANMGB010000000
VERSION     DANMGB010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.064"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            11..703
                     /gene="fkpA"
                     /locus_tag="PXG19_001347"
     CDS             11..703
                     /gene="fkpA"
                     /locus_tag="PXG19_001347"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6066643.1"
                     /translation="MVGTLFSTNVMAEEKADPKFVDDSSYAVGVLMGKNINGVIESQK
                     DIFTYNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKINEEKTKATVAA
                     GDKFRADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGTLTDGTVFDSSY
                     DRGEPIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGKIPANSTLKFEI
                     ELLDFKAADAKK"
     gene            800..1456
                     /locus_tag="PXG19_001348"
     CDS             800..1456
                     /locus_tag="PXG19_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6066644.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            1456..1833
                     /gene="tusD"
                     /locus_tag="PXG19_001349"
     CDS             1456..1833
                     /gene="tusD"
                     /locus_tag="PXG19_001349"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL6066645.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            1835..2206
                     /gene="tusC"
                     /locus_tag="PXG19_001350"
     CDS             1835..2206
                     /gene="tusC"
                     /locus_tag="PXG19_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL6066646.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            2216..2491
                     /gene="tusB"
                     /locus_tag="PXG19_001351"
     CDS             2216..2491
                     /gene="tusB"
                     /locus_tag="PXG19_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL6066647.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            2607..3506
                     /locus_tag="PXG19_001352"
     CDS             2607..3506
                     /locus_tag="PXG19_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066648.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            3856..7881
                     /gene="rpoB"
                     /locus_tag="PXG19_001353"
     CDS             3856..7881
                     /gene="rpoB"
                     /locus_tag="PXG19_001353"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL6066649.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            8144..12427
                     /gene="rpoC"
                     /locus_tag="PXG19_001354"
     CDS             8144..12427
                     /gene="rpoC"
                     /locus_tag="PXG19_001354"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL6066650.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         3802 a         2428 c         2899 g         3458 t
ORIGIN      
        1 atttactctt attgttggca cactttttag tacaaatgtg atggcagaag aaaaagcaga
       61 tcctaaattt gtggatgatt cctcttatgc cgtgggtgta ttaatgggta aaaatattaa
      121 tggtgtgatt gagtcacaaa aggatatttt tacctataac caggataaaa tcttagccgg
      181 tgttcaggac accttaaaga aaaccggtaa attaaccgat gaagatttgc aaaagcagtt
      241 aaaatcgtta gatgcctatt tatctgcgaa agaagcaaag attaacgaag aaaaaaccaa
      301 agcaacggta gctgcaggcg ataaattccg tgctgattat aaaaaacagt ctggcgtaaa
      361 agaaacggct tcaggcctgt tatataaaat tgaaaaagca ggtgaaggca attcaccaaa
      421 agcggaagat actgtgaagg tgcattacaa aggcactttg actgatggca cggtatttga
      481 cagctcttac gaccgtggtg agccgattga atttcagtta aatcaattaa ttccgggttg
      541 gattgaagcg attcctatgt tgaaaaaagg cggtaagatg gaaattgtag tgccacctgc
      601 attagcttat ggtgatcgtg ccgcaggcaa aattccagca aattcaacct tgaaatttga
      661 aattgaatta ttagatttta aagcagcaga tgctaagaaa taattcgtta ttccttaatt
      721 attgaagata cgtaagcggt tagatttatt ataatatttg caaaaaatgt gataaaacta
      781 accgcttgta atttgtatta tgaccaaaaa atttacgcct ttttctgacg aagatcacgc
      841 cattcttgct tcttactttc cgatggtaga tgggattgcg gcactgattg gtgagcattg
      901 cgaaattgta ttgcattcgt tagagtttct ggaacattcg gcaatttata ttgctaacgg
      961 acacaatact aaccgtaaaa tcggctctcc gattactgac cgtgcattga aatcgctgca
     1021 tcatatggca acggatagcg tctccaaacc ttattttacc aaggcaaaag gtggcgtttt
     1081 aatgaagtct atcactattg cgattcgtaa tggtaaacag cacgttatcg ggttactgtg
     1141 cattaatatt aatttggaag tgcctacctc acagtttctc aattctttta ttgcccctgt
     1201 agataccgct tcagaagtta cttttgccag ttcagtagaa gatttggttt cacaaacgat
     1261 tcaaacgacc attgatgatg tgatggcaga tcgtcaaatt tctaacaata ataaaaatcg
     1321 tcaaattgtg atttcgttat ttgagaaagg gatttttgat attaaagatt ccattaacca
     1381 agtagcggag aagctggata tttcacgcca tactgtgtat ctctatattc gtcaaattaa
     1441 gcaggacaat gattaatgga ttatgtatta gcgataaaat caccggttta tggttcacaa
     1501 ggggcatttt tagcctacca agtggcggaa gaattattaa aagccaatca tacaatttgc
     1561 caaatattct tttttcaaga aggcgtgagc aatgctaatg ccttagtgaa tccagcaagc
     1621 gatgaagtga atttagtcga gatgtggaaa aaattggcta aattgcaccg cttgcctctg
     1681 catttgtgca ttgctgctgc ccagcgtaga ggcgtggtgg atgagcaaat ctcagctaat
     1741 gcaacacata atttagccga aggatttacc ctagccgggt taggcgaatt tagccaagca
     1801 gtattaaaag cggatcgatt actgactttt taagatgaag aaatataaac ttgccttttt
     1861 atttacccag ccaccttttg gttcggcagt tagccgtgag gggctagatg ccttgcttgc
     1921 agctagtgct ttttgtgacg agcaagagat agctatcctc tttatcaatg atggcgtatt
     1981 taatctcatt gccgatcaac agccggaaaa actcttacaa aaagatcata tttccacctt
     2041 caaattattg gagttgtatg acttaactga atgttttatt tgccaagaaa gtgtaagttt
     2101 acgagggctg gataatgcag attggttact gcgaatgctt caatttaaaa ctcacgctga
     2161 gatgatcgca ttgctcaatc aagctgaaaa agtaatgacg ttttaaggaa tatttatgct
     2221 ttataccctt tccaaagcga attatgatga agaaacctta aacttctttt tctcacatct
     2281 tagtgagaac gatgcggttg ttctgtggca agatggcgtg ctacaagcgg tcaaaagtcc
     2341 gcaatttttt gcaaaattgc cccgttgcta tttattggca caagatgtgc aagctcgagg
     2401 attgcaagag aagctcactg catttcagtg catttcatta tccgaattag tcaaattaac
     2461 agcggtttat tttccccagg ttgcactgta acctagagag gatatttttt gtaataccaa
     2521 ataatttaga ttatgatgtg attcctaaaa aggagaatat tatgaaaaca aaatgtctta
     2581 ttccgctact agcacttaca cctgttatgg tgatggcaga agaaaataac acttgggtag
     2641 acaagaaaca tgaaacagta agcactacct tagatcgttg ggcaaacaat attaacagtt
     2701 ggctaggtga tgcagaccca gataaaccgg gaacggcttc tttacgggta atgttagata
     2761 gccgttggga taaacacgat aaatttactt ataagccccg tgttcgtggt aaaatcaaac
     2821 tccctatctt gaaaaagcat ctaaatgtcg tatttggtga tgacgaactg gataatgagc
     2881 ttaccgataa aaatcatgct ggaaaattgt ataaaaacgt caatccaaat aaacgctata
     2941 actctcgtga agcgagagat tcgaactctt ctatcggttt acgttggtct gatggcatta
     3001 aggctttagg gattgagacc gatttagatg ctggtattcg ttcgggaagc gatattttcg
     3061 ggcgtttacg catcagtaaa gattggaaaa tcaccgacca gttcagtacc cgcctagagc
     3121 aaatttatcg ttacggttca gagagcaagc actatttacg tactaacttt gaaaataaat
     3181 ataccgaaac ggataccacc tttattatga accacaccaa ttttgaatat cgtcatgatg
     3241 tagatgaaga aagaagttgg gggaatagtt tatatcgtca acataacttc aaaccactca
     3301 cgcacatcag ctatggtatc agtatggggg ggcgtttaga taaagagtta tcaaaattta
     3361 actattgggg tccatttgtc tcctatcgtc aaccaatctg gcgcaactgg ctctttatcc
     3421 agcctgaaat cagtttttat aacgacaaag ataaagatcg taagcacttt attcagacat
     3481 ttgtacgttt agaggctatc ttctagctat taagcctcaa gtagaatctt ggggcttgtt
     3541 tttgcaagcg gtcaatttct tgccaaaatt tacaaaatcc gctataattc ctaaccattt
     3601 ttagcaaaaa ttggctgacg gcttgaccgg tcagcctttt gtgcttgaac gcaagggctg
     3661 attttgtcat tttaatcagc aaaatttgca aatttcctgc ccaatttgac cgcttgcagt
     3721 agcgatttct gactgcttga ttggcgattg gaaaatgaca tctcgtacag tttttataat
     3781 gccacttcca accgagtctt tcgtgtcgga ttgtgtaatc tcaaccaaaa tatatttcag
     3841 aggctatctt aaaaaatggc atattcatat tccgagaaaa agcgtatccg taagagcttt
     3901 ggcaaacgcc cacaagttct gaacgtacct tatctattaa caattcagct tgattctttt
     3961 gaaaaattta tcgaaaaaga tcctgaaggg cagcaaggtt tagaagcggc attccgttct
     4021 gttttcccga ttgtgagcaa caatggtgca acagaattac aatacgtttc ttacgaatta
     4081 ggcgagccgg tgtttgacgt gcgtgagtgc caaattcgtg gtacaaccta cgctgcacca
     4141 ttacgcgtga aattgcgttt agtctcttac gatcgtgaag ccgcagccgg tacggtaaaa
     4201 gacattaaag agcaaaacgt gtatatgggc gaaatcccat taatgaccga taacggtact
     4261 ttcgtgatta acggcaccga gcgtgttatc gtttctcaat tacaccgtag cccaggtgtg
     4321 ttcttcgatt ctgacaaagg taaaacccac tcttcgggta aagtgcttta taacgcacgc
     4381 attatccctt accgtggttc ttggttagat ttcgagtttg atccgaaaga taacttattt
     4441 gcccgtatcg accgccgtcg taaattgccg gcaaccatta ttctacgtgc attaggctac
     4501 accaccgaag aaatcttaaa tttattcttc gagaaaatta aatttgaaat tgccgataat
     4561 aaattattga tgacgttagt gcctgagcgt ttaagaggcg agactgcatc atttgatatt
     4621 gcagcaaacg gcaaagtata tgttgaaatg ggtcgccgta ttaccgctcg tcatatccgt
     4681 gcgttagaaa aagacaatgt gacccaaatt gaagtgccgg tggaatatat tgtcggcaaa
     4741 gtagcggctc aagattacgt tgatttatct tcaggtgaag tgatttgccc ggcgaatatg
     4801 gaaatctcga tggagatgtt ggcgaattta tcacaagccg gttacaacca gatcgaagta
     4861 ttatttacca acgatttaga ccacggtcca tatatttctg aaaccttacg tgttgatcca
     4921 acttacgacc gtttaagtgc gttggttgaa atctatcgta tgatgcgtcc gggcgaacca
     4981 ccaacgaaag aagcggcaga agcattattc gataatatgt tcttctcggc agagcgttat
     5041 gatttatcgg cagtaggtcg tatgaaattc aatcgctcgt tagaaattcc ggaaggcgta
     5101 ggcagcggta ttttaagcaa cgatgacatc atcggtgtga tgaaaaaatt aatcgaaatc
     5161 cgtaacggtc gtggtgaagt ggatgatatc gaccacttag gtaaccgtcg tatccgcagc
     5221 gttggtgaaa tggcagaaaa ccaattccgc attggtttgg tgcgtgtaga acgtgcggtg
     5281 cgtgagcgtt tatctttagg cgatttagat ggtgtaacac cacaagattt aatcaacgct
     5341 aaaccgattt cagcagcagt gaaagagttc tttggttcat cacaactttc gcaatttatg
     5401 gaccaaaaca acccgctttc agaggtaaca cataaacgcc gtatctcggc attaggcccg
     5461 ggtggtttaa cccgtgagcg tgccggcttt gaagtgcgtg acgtacaccc gactcactat
     5521 ggtcgtttat gtccaatcga aactcctgaa ggcccgaata tcggtttgat caactcacta
     5581 tcggtgtatg ctcgtactaa taactacggt ttcttagaga ctccattccg taaagtggtg
     5641 aatggtcaag taaccgaaga gatcgagtat ttatctgcga ttgaagaaag caacaatatc
     5701 attgcacagg cgaactcaaa cttagatgag aacttccgtt ttaccgatac ttatgtaact
     5761 tgccgtcagc aaggcgaatc gggcttattc aaaccggaag aagttcaata tatggacatc
     5821 tcaacccaac aagtggtttc tgtggctgcg gcgttaattc cgttccttga gcacgacgat
     5881 gcgaaccgtg cgttaatggg tgcgaacatg caacgtcagg cagttccaac cttgcgtgcg
     5941 gacaaaccat tagtcggtac cggtatggaa aaaccaattg ctcttgactc aggtgtagcg
     6001 attgtcgcaa aacgtggtgg tacggtgcag tatgttgatg cgtcacgcat tgtagtgaaa
     6061 gtaaatgaag atgaaaccat tccgggcgaa gcgggtatcg atatttataa cttaatcaaa
     6121 tacacccgtt caaaccaaaa cacctgtatc aaccaagtac cttgtgtgaa cttgggtgag
     6181 ccggttgctc gtggtgaaat cttagcggac ggtccttcaa cagacttagg tgaattggca
     6241 ttaggtcaaa atatccgtgt ggcatttatg ccttggaacg gttataactt cgaagactca
     6301 atgttagttt ctgagcgtgt ggtacaagaa gatcgcttta ccactatcca cattcaagaa
     6361 ttatcttgtg tggcgcgtga taccaaatta ggtgcagaag agatcaccgc tgatattcca
     6421 aacgtgggtg aatctgcatt aagcaaatta gatgaatcag gtatcgttta catcggtgca
     6481 gaagtgaaag gtggcgacat cttagtaggt aaagtaactc ctaaaggtga aacccaatta
     6541 acaccggaag aaaaactatt gcgtgcgatc ttcggtgaaa aagcctctga tgtgaaagat
     6601 tcatcattgc gtgttccaaa cggtacttca ggtacggtta tcgatgttca agtatttacc
     6661 cgtgatggcg tagagaaaga taaacgtgcg aaagaaatcg aagagatgca actgtgtgaa
     6721 gcgaagaaag acttagcgga agagttggaa atcttagaag ccggtttatt tactcgtgtt
     6781 cgcaacctat taattgaagg cggcgtaaaa gaatctgcat tagatggcgt tgctcgtgaa
     6841 aaatggttag aacaaaccct tgaagacgaa gcgaagcaaa atcagttaga acagttagcg
     6901 gaacagcacg aagagttacg caaagaattt gaacgtaaac ttgagatcaa acgcaacaaa
     6961 attatccaag gcgacgattt agcaccgggt gtgttaaaag tagtgaaagt ttaccttgcg
     7021 gtgaaacgcc aaatccagcc gggtgataag atggcgggtc gtcacggtaa caaaggggtt
     7081 atctcgaaaa tcaaccctgt ggaagatatg ccatacgatg aaaacggtca gccggttgaa
     7141 atcgtattga acccgctggg cgtaccgtct cgtatgaaca tcggtcagat cttagaaacc
     7201 cacttaggct tagcggctca tggtatcggt gatcagattg ataagatgat caaacagcaa
     7261 caagaagtgg ctaaattacg tgaatatatg caaaaagcct acgatttagg tcacggctca
     7321 caagtcgttg atttaagcac tttctctgat gaagaagtga tgcgtttagc gcaaaactta
     7381 cgcaaaggct taccgcttgc tactccggta ttcgatggtg cacacgaaag cgaaatcaaa
     7441 ggcttattag agttaggcgg cttaccgact tcaggtcaga tcacacttta tgatggtcgt
     7501 accggtgaga aatttgagcg tccggtaacc gttggttata tgtatatgct caaattgaac
     7561 cacttggttg atgataaaat gcacgctcgt tcaaccggtt cttatagcct tgttactcaa
     7621 caaccattgg gtggtaaagc tcaattcggt ggtcagcgtt tcggtgagat ggaggtttgg
     7681 gcattagaag catacggtgc ggcttatact cttcaagaaa tgcttacggt gaaatcggac
     7741 gatgtgaacg gtcgtacgaa gatgtataaa aacattgtag atggtacaca ttatatggag
     7801 ccgggtatcc ctgaatcctt taacgtaatt accaaagaga tccgtgcatt agcaattgat
     7861 atggagctgg acgaagcgta atggtttcac tctccccctt gatgggggag agacaggcaa
     7921 aggatttgtt cagaatcctt tggcagagag agggtgatgc aagcggtgta aatttgctaa
     7981 atttttgcaa aaatcgaccg cttaccctct ccctgatttt gcttctgaac gaggcaaaat
     8041 ctatccctct cccacaaggg gagagggttt aaaatcgcaa ccaaattcgt agagtggata
     8101 ttctttccac caaacaaaac aacctcaaac taggggcaaa aaagtgaaag acttagtgaa
     8161 gtttttaaaa gcacaaacaa aatcgaacga agattttgat gtgattaaaa ttggtttagc
     8221 atcaccggac aagatccgtt cttggtcttt tggtgaagtg aaaaaaccgg aaaccattaa
     8281 ctatcgtacc ttcaaaccgg agcgtgatgg tttattctgt gcacgtattt tcgggccggt
     8341 aaaagattac gagtgcttgt gtgggaaata caaacgttta aaacaccgtg gcgtaatttg
     8401 tgaaaaatgt ggtgttgaag taacccaaac taaagtacgt cgtgagcgta tggggcacat
     8461 tgaattagct tgccctgtcg cacacatctg gttcttaaaa tcactaccgt cccgtatcgg
     8521 tttaatctta gatatgccgt tgcgtgatat tgaacgtgtg ctttattttg aatcttatgt
     8581 agttactgaa ccgggaatga ccgatttaga gaaaaatcag ttattaaccg aagaacaatt
     8641 tatggacgct gaagagcgtt ggggtgatga atttgaagcg aaaatgggtg cagaaggtat
     8701 ccaagcatta cttcgtgatt tagatttaga acaccaatgc gaaaccttgc gtgaagagtt
     8761 acaagaaacc aattcagaaa ccaagcgtaa aaaaatcact aagcgtttaa aaaccttaga
     8821 agcattctta caatccggca acaaaccgga atggatggtg atgacagtat taccggtact
     8881 tccaccggat ttacgtccgt tagtaccgct tgacggtgga cgttttgcga cttctgactt
     8941 aaacgattta taccgccgtg taattaaccg taacaaccgt ttaaaacgct tgttagattt
     9001 agttgcaccg gacatcatcg tgcgtaacga aaaacgtatg ttacaagagt cggttgatgc
     9061 gttattagac aacggtcgcc gtggtcgtgc gattaccggt tcgaacaaac gtccgttaaa
     9121 atctttggca gatatgatca aaggtaaaca aggtcgtttc cgtcaaaact tattaggtaa
     9181 acgtgtagat tactcaggtc gttcggtaat taccgtaggc ccatacttac gcttacacca
     9241 atgtggttta ccgaagaaaa tggcgttgga attattccgt ccgtttatct actcaaaatt
     9301 agaaaaccgt ggcattgctt caactattaa agccgcgaag aaaatggtag agcgtgaaga
     9361 tcctatcgta tgggatattc ttgccgaagt gattcgtgaa cacccgattc tacttaaccg
     9421 tgcaccaaca cttcaccgtt taggtatcca agcgtttgag ccgttattga ttgaaggtaa
     9481 agcgatccag ttacacccac tcgtgtgtgc ggcgttcaat gcggacttcg acggtgacca
     9541 aatggcggtt cacgttccat taacccttga agcacagtta gaagctcgtg cgttaatgat
     9601 gtcaaccaac aacgtacttt caccggcaag tggtgatccg attatcgtac cgtctcagga
     9661 cgttgtactc ggtctttact atatgacccg tgagaaagta aacggtaaag gtgagggaat
     9721 gtacttcctt gaccctcgtg aagcggaaaa agcataccgt accggtcagg ctgaattaca
     9781 ttctcgtgtt aaagtgcgtg ttactgaata tgagaaaaac gaagcaggcg aattagaagc
     9841 aaaaacttcg ttagtagata ccaccattgg tcgttcaatc ttatggatga ttgcaccaaa
     9901 aggtatgccg tttagcttgt tcaaccaaac cttaggcaaa aaagcgatct cgaaattaat
     9961 taacgagagc tatcgccgtt taggtttaaa agaatctgtg gttttagctg accaaattat
    10021 gtacaccggc tttgcttatg ctgctcgttc tggtgcctca gtaggtatcg acgatatggt
    10081 aattccggag caaaaatacg caatcattga agcggctgaa gcggaagtcg ctgagatcca
    10141 agagcaattc aacggcggtt tagtaacagc cggtgagcgt tataacaaag tgatcgatat
    10201 ttgggctgct gcaaacgaac gtgttgcgaa agcaatgatg gaaaaccttt caacggaaga
    10261 agtaatcaac cgtgaaggta atccggaaaa acaagcctca tttaacagta tctttatgat
    10321 ggcggactcc ggtgctcgtg gttctgctgc acagattcgt cagttagcgg gtatgcgtgg
    10381 cttgatggct cgtccggacg gttcgattat cgaaacccca attactgcaa acttccgtga
    10441 aggtttgaac gtattacagt actttatttc aacccacggt gcacgtaaag gtcttgccga
    10501 tacggcatta aaaacagcga actccggtta cttaacccgt cgtttagttg atgtggcaca
    10561 agatttagtt atcattgaag atgactgtgg tacgcacgaa ggtatcgtga tgacaccact
    10621 tatcgaaggt ggtgatgtga aagaagccct gcgtgatcgt gtattaggtc gtgtggtggc
    10681 agaagatgtg ttaaaaccgg gtacagatga agtattaatt ccacgcaaca ccttattaga
    10741 tgaaaaatgg tgtgatgtgg tggatcgtga atctgtggat gtgatcaaag tacgttcggt
    10801 agtaacttgt gatacagact tcggtgtgtg tgctaaatgt tacggacgtg acttggctcg
    10861 tggtcactta atcaaccaag gtgaagcggt cggtgttatt gcggcacaat ctatcggtga
    10921 gccgggtaca cagttaacga tgcgtacgtt ccatatcggt ggtgcggctt ctgcggcagc
    10981 aaaagaatct agcatccaag tgaaaaacgc aggtacgatt aaattaacca acgctaaatt
    11041 tgtaaccaac aaagaaggca aaatcgtatt aacttctcgt aatactgaat taactgtcat
    11101 cgacaccttc ggtcgtacca aagaaaacta taaagtgcct tatggtgcgg tgctttctaa
    11161 acacgacggt gcagaagtgg ctgtgggtga agtggttgcg aactgggatc cgcacacaat
    11221 gccggtaatc tcagaggtat caggtcgtat ccaatttagc gacatcgtag atggcttaac
    11281 cgttactcgc caaaccgatg aattaaccgg tttatcatct atcgtggtgc aagatgtggg
    11341 tgaacgtgca accgcaggta aagatttacg tccggcatta cgcttagttg atagcaacgg
    11401 caaagacatc ttaattccgg gtacagacgt tgcagcacaa tacttcttac cgggtaaagc
    11461 aatcgtaacc ttagacgatg gtgcagaaat tgaagtcggt gaagccttag cccgtattcc
    11521 acaagaatct gtggggacga aagatattac cggtggtctt ccacgcgtag cagacttatt
    11581 cgaagcccgt aaaccgaaag agccggcaat cttggcggaa atttcaggta ttgtgtcgtt
    11641 cggtaaagaa accaaaggta aacgccgctt ggtaattact ccggcggaag gcgaagcgtt
    11701 tgaagagatg attccaaaat ggcgtcagct caacgtattt gaaggcgaga tggtacaacg
    11761 tggtgatgtg atatcagacg gtgcagaaac tccgcacgac atcttacgct tacgtggcgt
    11821 tcacgccgtt accgactaca tcgtaaacga agtgcaagaa gtttaccgct tacaaggggt
    11881 aaaaattaac gacaagcaca tcgaagtgat tgttcgccaa atgttgcgta aagctgtgat
    11941 caccaacgct tacgactctg aattcttaga gggcgaacaa gtggaagtgg ctcgtgtgaa
    12001 aattgccaac cgcaaacgtg ctgaagaagg caaaccgttg gtagaatttg aacgtgaatt
    12061 gcttggtatt accaaagcat ctcttgcaac agaaagcttt atttctgcag cctcgttcca
    12121 agaaaccact cgagtgctta ccgaagccgc agtggcaggt aaacaagatg aattgcgtgg
    12181 cttaaaagag aacgtaatcg ttggtcgctt aatcccggca ggtaccggtt ttgcttacca
    12241 ccaagcacga gctaaaaaac gtgcccaact ggaagcagga attgcagttg tccctgaatt
    12301 tgaagcaccg gcagctaaag ccaattcatt cgttaccgat gcagacatcg aagctgaatt
    12361 tgaatttgtt gcagacgatg caacccaaag tttagcagcg ttgttaaatg cgggtgagga
    12421 agagtaatag ctcgtagggt atgataaatt aaaaaatctc ctagaatata atttctagga
    12481 ggttttctac ttgaatataa gggaaaaata tatagaatgt aagggcttat tcaatttgtg
    12541 gataaggtaa tcaacagtat gtcaatagtt gataacattt cataaag
//
LOCUS       DANMGB010000065        12503 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.065, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000065 DANMGB010000000
VERSION     DANMGB010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12503
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.065"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(313..495)
                     /locus_tag="PXG19_001355"
     CDS             complement(313..495)
                     /locus_tag="PXG19_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066651.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            645..1685
                     /gene="selD"
                     /locus_tag="PXG19_001356"
     CDS             645..1685
                     /gene="selD"
                     /locus_tag="PXG19_001356"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:690..692,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL6066652.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1685..2158
                     /locus_tag="PXG19_001357"
     CDS             1685..2158
                     /locus_tag="PXG19_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL6066653.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2148..3356
                     /gene="ubiH"
                     /locus_tag="PXG19_001358"
                     /gene_synonym="visB"
     CDS             2148..3356
                     /gene="ubiH"
                     /locus_tag="PXG19_001358"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL6066654.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3619..4851
                     /locus_tag="PXG19_001359"
     CDS             3619..4851
                     /locus_tag="PXG19_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL6066655.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4918..5904
                     /locus_tag="PXG19_001360"
     CDS             4918..5904
                     /locus_tag="PXG19_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6066656.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5945..6355)
                     /locus_tag="PXG19_001361"
     CDS             complement(5945..6355)
                     /locus_tag="PXG19_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL6066657.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6421..7731)
                     /gene="eno"
                     /locus_tag="PXG19_001362"
     CDS             complement(6421..7731)
                     /gene="eno"
                     /locus_tag="PXG19_001362"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL6066658.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7922..9100)
                     /gene="rlmC"
                     /locus_tag="PXG19_001363"
     CDS             complement(7922..9100)
                     /gene="rlmC"
                     /locus_tag="PXG19_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL6066659.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(9093..10130)
                     /gene="nagZ"
                     /locus_tag="PXG19_001364"
     CDS             complement(9093..10130)
                     /gene="nagZ"
                     /locus_tag="PXG19_001364"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL6066660.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10256..10987)
                     /locus_tag="PXG19_001365"
     CDS             complement(10256..10987)
                     /locus_tag="PXG19_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL6066661.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(11076..11756)
                     /gene="mutH"
                     /locus_tag="PXG19_001366"
     CDS             complement(11076..11756)
                     /gene="mutH"
                     /locus_tag="PXG19_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL6066662.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11848..12483)
                     /gene="lexA"
                     /locus_tag="PXG19_001367"
     CDS             complement(11848..12483)
                     /gene="lexA"
                     /locus_tag="PXG19_001367"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL6066663.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
BASE COUNT         3498 a         2542 c         2795 g         3668 t
ORIGIN      
        1 aggaaaaatg tgctgtggca gaacaccgat ggcaacctta cttgatggaa aacggatttg
       61 ggtggaaaag aatttaagct caaattaatc tgacagacac ggtaatttaa aacgggagac
      121 tgtcagatca agtctgatct tctacaacta agccttctca gaataaataa attttcacaa
      181 gcggtgcaac tttgcaaaaa cttcggtatt atgtagcagt tgcacaaaac cccaaattca
      241 ttaaaaccgc ttaaaaatga aatgccctaa actgattttt cagtctaggg catttattat
      301 cacatattat ggttaatagg gaaaactcac atcattgtta tgctggtgat atttttgcca
      361 aaatgcgtga tattgttttt tcaccgatgt gtttaataaa aacgggatta tcaagacata
      421 ggtcgggcaa ttccatagca ttgcacgttg tgtatccgtg ccgattttgg tgcgtaagta
      481 accaaactga tacattagac ccaatccaac cgtcacctat tctaatagca taataactaa
      541 ggtcgcatca ttaaattaaa agctcatttt ttgcaaaaaa tttcccaaat tccaccgctt
      601 gttggcgtac aataggcata attttgattt acgatggagg cagaatgtct gaaccgataa
      661 aacttacgca gttcagccac ggggcgggtt gaggctgtaa aatttcgcct aaggtgttag
      721 ggacaatttt acaaactcaa ttagaacaat ttgtcgatcc gaatttattg gtaggcaatg
      781 aaacggcgga cgatgctgcc gtctatgatt tagggaacgg gcaggccatt atcagcacca
      841 ccgatttctt tatgccgatt gtggacgccc cgtttgattt cgggcgaatt gctgctgcca
      901 atgcgattag cgatatttat gcgatgggtg gcaagccgat tatggcgatt gcgattctgg
      961 gctttccggt gaataaattg ccggctgaag tggctcaaca aattgtcgaa ggtgggcgtt
     1021 ttgcgtgcca gcaagccggt attgccttgg cgggcgggca ttcgattgat tcgcccgatc
     1081 cgattttcgg cttggctgtt accggcattg tgccgaccga acgggtgaaa cgcaatgcct
     1141 ctgcggtggc tgggtgtgag ctgtttttaa ccaagccttt ggggattggc attctaacca
     1201 cggcagagaa aaaaggtttg ttgaagcctg aacatcaaca tctggcaagc gaggtaatgt
     1261 gccaaatcaa cttgattggt tcagcgtttt ccgaactgcc tgaagtcacg gcaatgactg
     1321 atgtaaccgg ttttggctta ctcgggcatt taagcgaggt gtgtcaaggc tcgggcttac
     1381 gggcggaggt tgattttgag gatattcaag tccttgatgg cactaaggag tatattgcat
     1441 tgggagcagt tccgggtggg acaaatcgca atttcgacag ctatgggcat ttgatttcgg
     1501 caatgacgga cgagcaaaaa gcgattttgt gcgatccgca aacctctggc ggtttattag
     1561 tggcggtgct gccacaagcg gtcgaaaaag tgcaacaaat tgcaaatcgg gcaaatgtgc
     1621 cgttattcca cgttggcaga ttgctggaaa tggaacaggg caaaccacgg attgaggtaa
     1681 tttgatgttt aaaccaaatg taacaatggc ttgcgtggtg cattgtaagg gaaagtttct
     1741 gtttgtggaa gaaattgaat atggcaaacg tacccttaac cagccggcag ggcatttaga
     1801 aaaagatgaa accttgctgg agggggcaag ccgtgagctg tttgaggaaa ccggtattcg
     1861 ggcagaaatg gcaaatttgg tgaaaattta tcaatggcaa gcccctcgtt cacaaaccga
     1921 tttcttgcgt tttctgtttt cggtggaact ggaagagtgg ctggagccga atccgcaaga
     1981 tgcggatatt acccaagccc tttggcttac tttagcagaa tttgaagact acattcagca
     2041 acaagggcaa tgtgccagaa gcccgttggt ggttcaatcg gtcaaagatt atttaagcgg
     2101 tgagcgttat ccattaagtt tgttgaatgc gtttgaatgg gcgagaaatg gaaaataaaa
     2161 caacaaccca atttgatgtg gtgattgtgg gcggggcagt gaccggctcg gtgctggcat
     2221 tggcgttaag tagttttact catcacaaaa tctcgattgc gatagtggaa aaatcgctgc
     2281 cggactatga acagcaaggc ggttttgatg ctcgcagtat tgccttagcc gaaggcagtt
     2341 tgcaaaaaat ggggcaaatc agaccgcttg caggctcaag tttaggcgag atgattagcg
     2401 aaatcggcac gccgattcag caaattcaag tagcggataa agggcatttt ggtaaaacga
     2461 ccttgaaagc aagcgagcag aatgtggctc aactgggtat ggtggtggaa cttgcaaaat
     2521 tcggcagaaa attgaccgct tgtcttgcac agcaagctaa tattacgctt ttttgcccga
     2581 atcaagtggt tggcattgag cgttcccaac aacattgtgg attgagcttg aaaaatggtg
     2641 agaaactaag ctgttccttg ctggtggcgg cagatggtat tcaatctcag attgcaaaac
     2701 agtgcggtgt ggaaaccgta aaagtaaggg attatgcaca atcggcaatt atcgccaatg
     2761 tggaactgag tgaatctcac caaaatcaag cctttgaata ttttacgcct caaggccctt
     2821 ttgctttatt gcctttgagc ggaaatatga tgtcgttggt gtggtgtgtg aaagagccga
     2881 acgagttaat ccaactttca gacagtgaat ttttagcccg tttgcaacaa caatttggtt
     2941 ggaagttagg gcaatttgtt cgagtgagca agcggtttgt ttatccgctc attttgcaaa
     3001 aagcccagtc gcatattcac caccgcttag cagttgtcgg caatgccgca caaatgcttc
     3061 acccggttgc tgggcaaggt ttcaacttag gcttgcgtga tttgactacc ttagcggaat
     3121 tagtggcttt ggcgtttaat caagggaaag atataggcga attttcgctc ttatcaactt
     3181 ttgagaatga gagaacgcaa gatcaagcca gaatgataaa tgctacaagc ggtctgattt
     3241 cgcttttttg ttgcgaaatg ttaccagttc aggttgtgag gaatttaggg ttattaacgg
     3301 tttcccattc aaaaatagcc agagattttg ttgctaatca ggcattaggt tggtaaaaaa
     3361 cacaaaagca gcaattttct atttgacact gtttttaaaa aggcgtatta tccaacccgt
     3421 ttaaaaatct caccaaagcc ttgaatgcaa attcaaggct ttttcctttt tagtgaaagc
     3481 ctatgaattt tgtttgccgt aaaatcggca aaaaaatttt gcctaaaatt cgcaatcgtt
     3541 tgcgaaatag gtttatagcg ttgttttcat ctgggtaact gcaatggtta catcgcaata
     3601 catcaaagag agtaaaaaat gaccacagaa aatatgagta cgccaaagca ggcgtttatc
     3661 gggctgcaaa tgctgtttgt tgcatttggg gcgttagtat tagttccgct gattaccggt
     3721 ttagatccta atgttgccct tcttaccgcc ggtgtcggta cgttaatctt ccaaatttgt
     3781 actaaacgtc aagttcctgt tttcctcgca tcgagtttcg cttttatcgc tccaatccaa
     3841 ttcggtgttc aacaatgggg aattcccgtc acaatgggag cattgctctg ttccggtttt
     3901 atttatatgg cattatctgc tttagtgaaa gcgaaagggg tgaatattct gcataaatac
     3961 ttccctccaa tcgtgattgg accggtaatt atggtgattg gtttaggtct tgctcctgtt
     4021 gcggtggata tggcaacggg taaatcggcg aatattgcct ataacaccgc tattattgtt
     4081 tcaatgataa cgctggtaac tacgctgatt gtggcggtgt ttgcgaaagg gctattaaag
     4141 ctcgtgccaa tattagcagg tttaacggtg ggatatatct tgtctgtttt tatgggattg
     4201 gtggatttta ctaaagtggt tgaagctcct tggtttagtc taccgaaagt ttccgcaccg
     4261 gaattcaaat tagatgcaat cttgtattta ttacctatcg cacttgctcc ggcagtcgaa
     4321 cacttaggcg atgtaatggc aatcagccaa gttgccggta aagattttat gaaaaaaccg
     4381 gggttacacc gcacgctttt aggtgatggt ttagcaactt cagcagctgc ggcattaggt
     4441 ggcccaccaa atacgactta ctctgaagta accggtgcgg taatgctaac caaaaacttc
     4501 aatccgaaaa ttatgacttg ggctgcgtgc tgggctatcg ctttctcatt ctgcggaaaa
     4561 atcggggcat tccttgccac tatccctact tttgtgatgg gcggtattat gatgttgctg
     4621 ttcggtgcag ttgcggttgt ggggatcaat actctaatta aagctaaagt tgatttaagc
     4681 attccacgta atctttgtat tgcttctgta gtaatgacat tcggtattgg cggtatgtta
     4741 attaacatcg gcgaattctc attaaaaggg atcagcttgt gtgcattagt cgctattgta
     4801 cttaacattg tattaccaaa agaaaaagta gaagattctg ctgctcatta atcaaaggac
     4861 gctgtggcgt cctttttgct aataaccctc tatttgtaaa taaaaaggaa taacactatg
     4921 caaaaactca cattttcacc accactttta aatacgcctt gcccttggtg ttcggagtta
     4981 gagagcttgc gtgaacttta tgcgtgtgaa tataccggtg cggtaacaac ccgtacttca
     5041 atgcctcaac catatccaca cgattgggcg aagaaccaat atgtactctt tgattccaac
     5101 gcacagaaaa cagcaagtgt gaatactcaa gatgcaacta gcttacaaac agcaagcctt
     5161 aacaccatcg gtttaagccc aaataatctg gataccacca tcagctttgt acgcaccatt
     5221 tcaaatgagc tgacagcgcc atcaagcaaa ccatttatta tttcggtgtt tggttcaccc
     5281 gaagaggtgg gggaatgtta tgaaaaaatt gttgctttcc aaactgaagt gaaaatgcct
     5341 ttggcaatgg agattaatat ctcttgcccg aatattccgg gtgaaatttc gcctgcttat
     5401 tccgcagaag aattatcaca ttacttgcac gcactacaaa cttcgctaaa aaaactggct
     5461 caaggtgata atactttacc aatcgggatt aaaattccac cttttactta ccaaaatcaa
     5521 tatgatgaat taatcaaagg cttattacaa gcggtcgaaa atggcgaaaa tttaccaatt
     5581 tcctttatta cttcaaccaa tacgcttggc tcatcgcttg tcttaaatgc tggcaaagcg
     5641 gtattaaatt cagaagtggg aacgggcgta ggcggaatgg caggaacggc aatccatgca
     5701 ctttctttgg ggaatgttta cacgattcgc caaatgttag atcaagagcc taagctcaaa
     5761 catcttcaaa ttattggtgt gggcggcgtg aatgataaag ccggctttga gcgaatgaaa
     5821 tcggttgggg cagactttgt ggggttagct accgcattag gggtgaaagg aatcggcgtt
     5881 tttaaagaga ttctgtctga ataatgaaga ggagggcgtg cattgcacgc ccgaataaat
     5941 gaaattagcc taaccatttc tccactaatt cattagtggt ttctttatgt acccacatac
     6001 tgccaagttc cggcattggg aatttggtgt ggttgtagcc gacaaattgg cggaaatcaa
     6061 acacggcgtg cgggtagccg ttgatcagta aaaaggcttg atagccgtct tcactccagc
     6121 aaatttctaa acggcgaggt tcttttaatg aattttgctc aatatcgctg acccgaaaca
     6181 caaataaact atccactacc ggctgttcgg tttggtgtaa gtccattgca taaaagtagc
     6241 cgctttcttc atcaatttca aacatcacta ctaaatgttc gtgctgggtt gaatgagcgc
     6301 cattacggta aggttcgttc agtagaatat gagcagttaa aacagagtag agcattaaat
     6361 tatccttata agtaaaatgc caccgatttc tcagtggcat ttaaatattt aatcaggcaa
     6421 ttacgcttga cctttaatct ctttacggcc gttgaacgga gccggtgtac cagcacgctc
     6481 taacgcttct tcgatacgga ttaactggtt gtatttcgct acacggtctg aacggctcat
     6541 tgaaccggtt ttgatttgac ctgctgctgt acctactgct aaatctgcaa tggttgcatc
     6601 ttcagtttcg cctgaacggt gagagataac tgcggtgtaa cctgcatctt tcgccatttt
     6661 gattgcagct aaagtttcag ttaaagaacc gatttggttg aatttgatta agattgagtt
     6721 tgcgatacct ttctcaatac cgtttttcaa gattttggta ttggttacga ataagtcatc
     6781 accaactaat tgtactttgt cgcctaatac tttagtttgg tatgcgaaac cttcccagtc
     6841 agattcgtct tgaccatctt cgatagacac gattgggtac tctttgcata agccttctaa
     6901 gtagtgagtg aactcttgtg aagtaaaggt tttgccttcg cctttcatat cgtacacatt
     6961 gcgttctttg tcgtagaatt cagatgatgc acagtccatc gctaaagtta cgtctttacc
     7021 taacacatag cctgcttttt ctaccgcttc tttaatgcac gctaatgcgt ctgcgtttga
     7081 agccaagttt ggtgcgaaac caccttcgtc acctacagca gtatttaagc ctttcgcttt
     7141 taatactttt gcaagattgt ggaatacttc agcaccgata cgaagagctt cttttaatgt
     7201 agaagcacct accggttgaa tcataaattc ttgaatgtcc acgttgttgt cagcgtgttc
     7261 accaccattg atgatgttca tcattggtaa tggcattgag taaacacccg gtgtgccgtt
     7321 taattcagca atgtatgcgt aaagcggtaa gccttttgaa gcggctgctg cttttgctgt
     7381 tgctaaagaa accgctaaga tagcgtttgc accgaatttt gatttgtttt ctgtgccatc
     7441 taaatcgatc ataatttggt cgatttcagc ttgtgcagaa ccgtctttgc ctactaatgc
     7501 gtttgcaatt tcgttattta cggcagaaac cgcttttaat acacctttac ctaagaaacg
     7561 acctttgtcg ccatcacgta attctaatgc ttcacgtgaa ccggtagaag cacctgatgg
     7621 agcggctgct aagcctacaa aaccaccttc taagtgaact tctgcttcta cagttgggtt
     7681 accacgagag tcgatgattt cacgaccgat tactttaaca attttagcca ttgttgatgt
     7741 cctctaatat acgagttaat agaaaaaaga ataggtatat agtaaagcga ttttctgctt
     7801 ttgtcttgga aaaactgatt gagtggcaga aaatttgcca ctaatttgat ctaagactat
     7861 attcgcctga gattatagca acctttgcaa aaaacggcaa aaatttgccc gcttgtaatg
     7921 cttatttttt gactaaaaaa gtcaaggttt cataatgtgc tgtgtgagca aacatatcaa
     7981 acagctgcac tttgtgtagt tcgtaatttg tcaaaaatgt aaaatcgttc gccattgaga
     8041 cggcattaca actggagtaa atcaaataag gtgagcctaa ttgatttaaa aattctgcta
     8101 atagtttgcc gataccacgt cgaggtgggt tcacaatcac taaatcgggt ggagaaccag
     8161 cttcatttaa agcaaattgt gcagaatcta atgaggcaaa ttttacctgc tttaggccga
     8221 gtttttcagc cgatttggtc gcacttgcaa tagctgaggc tgaaatctca atgcctgtca
     8281 gctccacgtt cgagttcttc gcttgcaagg cgttggcaca atgtaagccg aaaccaccga
     8341 caccgcagaa caagtcccac aatttagcaa taggtaaatg ctcaatccag ctttgtgctg
     8401 tgtggtaaag ctggcttgct accacagggt tagtttggaa aaagccctga gggcgaataa
     8461 atagcggtat gccgttaaaa tgttcttcca gcactttttg ttcggtgagg aaaatctcag
     8521 tttcgccttc taaaagagca gcgtgttggg gctgaatatt cagactaact actgagttgg
     8581 gtggcagttt ttccaacagt tcgggcaatt cccgttcaac caatgcacgc tttgcttcac
     8641 tacgaaccac aaaacggagc ataaatgatt gattatattg gctttcggta atcagaatat
     8701 attttagctc accttttttc ttactgatgt tatacggcac taaaccagct cgagcgataa
     8761 aatctttcaa aatcggaaaa agtctatgaa atgaggacgg gtagagcaga cagtcggtta
     8821 aatccacccc gctttgagca tcattttgat cttttaaaat gcctaaaatc gggcgttcta
     8881 cactgccgga gaccaccatt ttcgctttgt tacgaaattg cgaaattggc gagccgacaa
     8941 gcggtaagat ttccgtttta ttttgcaaaa taaacggcaa aatcaaccgc ttgagatcgg
     9001 cctctttggc ggctaattgc gtgctgtatg gcttttcaat ccactggcac gaagtacagt
     9061 cgccacgctc aaaatgcgaa caatgcaaca agctagacat tcgcttcctt ccattccagc
     9121 cagttgtttt gtaaggccgt taattcagcc tgagtttgtt ggtagcgaga gctgttttcc
     9181 agctctcgcc aagtcacggt tttgcgtttc attaaagaaa ggcgacgttc tttttgtgct
     9241 tgagtcggct gatatttcag cccgtctaac acttgcacca ggccttcagg ctcgttacaa
     9301 aggagcaata aatcacagcc ggcttggatt gctttttcag aacgctcgac aaaattgccc
     9361 ataaagcccg cacctttcat tcccaaatcg tcagagaata tcacaccgtt aaagttcagc
     9421 tgtttacgca atacctcttt aagccaatag cttgaaccgc ttgccggctg gctatcacat
     9481 tgggtgtaaa cgacgtgggc aggcataatg gcagagagtt ttcctttggc aataagctgt
     9541 ttgaacggca gaatatcgtg attaaaaatc cgctctttcg ggcgatcatc aaacggggtt
     9601 tctaaatgcg aatcggctaa aacgtgtcca tgaccgggga agtgtttgcc ggtggtcgcc
     9661 ataccgattt cacgcattcc gtcaataaag gcttcggcaa caggcaaaat cgctgctggc
     9721 tcttgcccga atgagcgatc gccaatcgct ttgcattcgt gtcctaaatc cagtaccgga
     9781 gcgaaactga ggtctatatc gagggcaaac atttctgctg ccatcaacca gccggtttct
     9841 ttcgctaatt gcattgcttg ctctggcgtt gtggcaagtt ggttaaaaga ttgcattgcc
     9901 ggcagtttag taaagccttc acgaaagcgt tgcacccgac cgccttcttg gtcgacagta
     9961 ataagcaacg gttttttcac ccgctggcga atggatttca ctaatgcctg aatttgtgct
    10021 ttgtcgtaga aattacgggt gaataaaatt agcccggaaa ctaaagggtg ttccagcatt
    10081 tcgacttctt cttgagtcag ttctttatct ttaatatcaa tcagtaacat aattttcgtt
    10141 gagctatttg caaaaaaatg agcagatatg accgcttgtt gtgcctattc tacattaaaa
    10201 agcccttgat gttgatcaag ggcgaatgat taagggcata aatgagacag agcaattatg
    10261 cttgttctaa tttagcttgg ttacgacgca tttttatgtt gagcatttca accacaaccg
    10321 agaagcccat tgccgtataa accgctgctt ttggaatatg aatatcaaaa ccttcgccga
    10381 ctagtacaat accgattaaa atcaagaacg ctaaagcgag atttttaatg gttgggttgt
    10441 tatctacaaa gtccccaatg gttttcgctg ctaacatcat taccgcaact gcaatgataa
    10501 tcgcaataac cattaccgga atatcatctg ccattgccac agcagtaatg actgaatcaa
    10561 gggagaaaat aatatcaaaa attgcaattt gaattaacac cataaaaaag ctggcttttt
    10621 taatggattc gcttttttct tcgtgagatt cggcagaaat ggattctttc agctccattg
    10681 cacttttaac aatcaggaat aatccaccga tgagtagaat gagatctcta cctgaaattg
    10741 gattgttgcc aatagtgaaa agaggctcga ccaaacgcat catccaagca agcgagagaa
    10801 gcaataaaat acgggttccc attgccagcc ccaagccgat aattcgggca gattggcgtt
    10861 gttcaatagg taaacgggaa acgagaatac tgatgacgat gatgttatca atgcctaata
    10921 cgatttcaag cccggtaagt gtaaagagcg caacccaagc ttcaggattt gtgatccagt
    10981 caaacataaa aatgtccttt taaaaataag ggattaagtg atattttcta tcaaatagaa
    11041 ttaaagccga catcttatag agtgtgagga caaatttaaa gggggcaatg caaaaagttt
    11101 tgtaaaattt cggcggtaaa atgtttacgc aaatagaaac caagagggag agattgaaca
    11161 atctcccctt tagcgttgat agcagaggtg atagagcggt tatttctacc tttgggtctg
    11221 agttgtaaca cttcgcctaa ggttgcatta attttatgca gttcacctaa cacaatcaac
    11281 tccattaatt cctcccaatc ttgctgtagg cgggattctt gtgtgatagt cggagaccat
    11341 aaaatcggct gaccgatatg gcgttcggca aggggtatct ttcgttcccc ttcaaccgga
    11401 atccaaagca cacgggaaag cttatgttta acgtgggagg tttcccaaat aataccgttg
    11461 ttttgggtta aaggagcaag gctgacgaat gtggtttcca gcggtaatcc tttctgattg
    11521 accggaatgg ttttcagctc aatgcctaaa tgtgcaaaat cctgttcggc tttactgccg
    11581 gctttcgcac ctaaagcggt ttcaatcaga gtaccgaccc agcctttatc tcgtttcaga
    11641 tctgctggta tcggaatatg aagcatctcg gcaatttcac ctaaagtgaa ccctgccagc
    11701 cattccgctt tgcttaataa tgcctgctcg gttggagaga atgtagataa ttgcattgca
    11761 cttagttaat tagactaaac tggcaagcgg tcaaatttag gcagaaattt gcaaaaaatt
    11821 actaaaaaat aaccgcttgt gaggaaatta catccaagca ttactgcgaa taacgcctac
    11881 tgcaatgcct tcaatttcaa tatattcttg agcagggttt actacaatcg gttttaattc
    11941 atcgttttca gggtgtaagt aaattaattc acctttcttc tctaagcgtt taacagtcac
    12001 ttcatcattt acccgagcaa ccaccacttg cccgttacga gcggtattgg ttttatgaac
    12061 ggctaatagg tcaccgtcta aaataccgat tttttccatt gaattgccat ttactttgag
    12121 taaataatca gcacttggat taaacatcgc accattcacc gggtaatggt tttcaacgtg
    12181 ttcaaccgct aaaataggtg tgccagcagc tactttgcca atcaacggta agccttcatc
    12241 ttcatcgttg gcagcttggt tttcgtcttc gactaaaatg cgaattccac gagatgtacc
    12301 tgataacatt tcaatatagc ctttacgagc aagggctttt aagtgttctt ctgccgcatt
    12361 aggtgattta aagccgattt cacgggctat ttctactcgg gttggtggca taccggtggt
    12421 ttcaatatgg tttttgacga aatcaaaaat ttcttgctga cgggcagtta gatgtttacg
    12481 cattttaagt taatcctcac tgt
//
LOCUS       DANMGB010000066        12397 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.066, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000066 DANMGB010000000
VERSION     DANMGB010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12397
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.066"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            532..2919
                     /locus_tag="PXG19_001368"
     CDS             532..2919
                     /locus_tag="PXG19_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL6066664.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
     gene            complement(3086..3622)
                     /gene="hpt"
                     /locus_tag="PXG19_001369"
     CDS             complement(3086..3622)
                     /gene="hpt"
                     /locus_tag="PXG19_001369"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL6066665.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(3661..5010)
                     /gene="pmbA"
                     /locus_tag="PXG19_001370"
     CDS             complement(3661..5010)
                     /gene="pmbA"
                     /locus_tag="PXG19_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL6066666.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            5109..5639
                     /locus_tag="PXG19_001371"
     CDS             5109..5639
                     /locus_tag="PXG19_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL6066667.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            5645..6016
                     /locus_tag="PXG19_001372"
     CDS             5645..6016
                     /locus_tag="PXG19_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL6066668.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            6029..6742
                     /locus_tag="PXG19_001373"
     CDS             6029..6742
                     /locus_tag="PXG19_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL6066669.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            6745..7308
                     /locus_tag="PXG19_001374"
     CDS             6745..7308
                     /locus_tag="PXG19_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL6066670.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            7371..7811
                     /locus_tag="PXG19_001375"
     CDS             7371..7811
                     /locus_tag="PXG19_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL6066671.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(7815..8690)
                     /locus_tag="PXG19_001376"
     CDS             complement(7815..8690)
                     /locus_tag="PXG19_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6066672.1"
                     /translation="MMKTILIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
     gene            8796..10871
                     /locus_tag="PXG19_001377"
                     /pseudo
     CDS             8796..10871
                     /locus_tag="PXG19_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            10915..12351
                     /locus_tag="PXG19_001378"
     CDS             10915..12351
                     /locus_tag="PXG19_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL6066673.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
BASE COUNT         3855 a         2464 c         2308 g         3770 t
ORIGIN      
        1 accttatcta tcaatacttg aagccattaa gttcaagtct cgaccaggca ccatttgact
       61 aaatttagtt caacagagct aaacgaaaaa accttagaaa gcctgtaaaa tcaacgttta
      121 caggcttttt tgttgtttta gctcaatggc actaaacatt tcatatcgca aattttaagt
      181 agcctagcaa attttccgcc aaatatgacc gcttgtaatg ccgttaggtt attgcctggc
      241 ggcctttttg ttacagctct tatatttttt acaccaaagt tcagaaaaag tcacttttat
      301 cactaacatt aagatgaaac cttgatacaa agcttgggct tcggtgatat ttaaaaaata
      361 tcactttttt caataattgt gacaaatctc tcagattttt ttattttttt gtgcttaaat
      421 cttaagcata aaatgccgtt ataattactt gctatctggt attttataca taagattgaa
      481 ccatataata gctgttcagc taaaaattag tctttgcact ttatccccct aatggagaaa
      541 atgatgagaa aaatcaatca gttaatcata tccccatact ttttcctaag tattttatct
      601 gcttccgcta actctgattt ttggaaaagc gaccttaatt ttaatctcac aaatattacc
      661 aagcgtgtcg gagtcgataa ctttaccact ccagtagctg gcgagccttg ggctggtatt
      721 ggtccaaatg gtgaagctgc aggtactgcg ccattatatt atagccgtat tccagctatg
      781 caagttaccg aagataacaa attagttgtt atgtttgatt tacgctggaa tcgtgcgtat
      841 gaccaagatc gtattgatcc tggtattgcg atttcttccg atggtggcca tacttggacg
      901 aagaaaaccg cttggtcttt tgatagaact aatcacccag cacgccgttc aatggatcca
      961 acgctattac ataatcctat tgataatagt ttatatgtaa tgcacggaac ttggtctatg
     1021 tcggatcaac aatggtatgg tgggcgtgtt cctcacttta atagtggcag ctgggcagct
     1081 accatttata aatctactga tggtggttta aattgggaga aaaatactga gtttagtaaa
     1141 ttcagcaatt tagacgtatt ttctaaagtc accaaaaatg gaaaacctac cttaggcttt
     1201 ttaggcgggg tcggatctgg aattgtaatg caagatggta cgttggtttt cccaattcaa
     1261 accgcacatc aaaatggtat tgcgaccact attatgtatt ctaaggataa tgggaaaact
     1321 tgggaaatgc cagaaattga caacccagtt gcaccgaacc aaagttcttt agaaaatatg
     1381 gtgtttgaac tcgaaccggg taagctagtg atgactggac gaggaaacag tcgctgggca
     1441 tactcttcta ctgatatggg taagacctgg gaattattta ctccaactaa tggattatta
     1501 ccaactagct cacaaccaac tcaaggctct tctatctatg taacactacc aaatggtcga
     1561 aaagtgctac taatctctaa accagatgga aagaatgatg ggtggaaaag gggtgatatt
     1621 acactttgga tgctagatgc aaaagatcca tcgcacaaac acaaggtgca tattattcgt
     1681 ccaggttcag gtaatgccgc tggtgctggt tattcctctt tagcctataa agaagggaat
     1741 ttatttgttg cttttgaaaa cgatggtgat atttcagtaa aaaatttaac tgaacatatt
     1801 gctgaaatgg aagcaaaagc tatcgaatgg ggattaccag atgaacttac tcctgctttg
     1861 gataaaatca atgcactgcc ttatctcaat aaagctcaaa aagagacgct agtcgaaaaa
     1921 atgcgtcgtg ctaatgatac tgcgattgca caatcttttg tgattaacaa agaaatgtat
     1981 aatctgaaaa acaatagtga tgagctggat aaattggcaa aaaatattac taaagcactg
     2041 ccgtctcaac agaatattta tcaaagagcc ttagcctatg tgaataaagt caccaataca
     2101 gcggatacca cttatttaaa ttataatggt attatggata cctatgctaa tttatatgaa
     2161 agctatttgg ctttaaatac taaattagac ttcactcgct acatccaaaa agcgagaaag
     2221 ttcaatgaat ataacactga tattttatat cgtagctttg ataatttctt tgcccattac
     2281 gacacaggtg taaaacacaa taatctatcc ttaggcttga atacaaaatt aagtgagaat
     2341 ttacgtggtg gcttattctt tgaatacagt aataaaaatc gtaatagcgt acaaattggt
     2401 gcaagagcta aatatgaaat ggataatcac caactttctg gcttcttacg ctatcgtggc
     2461 gtaaaacata aagatatgct agcacgtaat aacagtgttg atggctacct aaattatgct
     2521 tatcgtattc aattagatga taaattaagc attagcccat cagttggtgc ttacgtttca
     2581 cgttcttctc gctcattaat agatgaagat cttgcgatta atagccgcac ggtctatgca
     2641 agtgatgtag gattgaatat ccattataag ctaaatgata ttgatgctta tattcgtcca
     2701 agtataggct ttgtcaatgg tgatataact ttatctcaat ctaatgatat gacaaacaca
     2761 tacaaaataa aggataaaag taacgtgtat tctgtcacga cagggttgaa aaaacgcttt
     2821 gcaaatggtg tggcattagg ggctgatttc aaattacatc gttatggttc tcaaactact
     2881 gaaagtaatt tcggtctaaa tgtaagttat aactggtaat accgtaaact gattacgatt
     2941 taaaagttag actagcccaa gactgagttc tatattccat agagctcagt cttttaattt
     3001 ttctttctcg ataagaatat tttatatttc aaccttaatc gagaatgtaa ttagtcgtga
     3061 aaatctaagt agtgattgag tttttttatt caatcactac tttagcaata taatctaaat
     3121 gacgatattt ttgggcataa tcaatcccat aacccaccac aaattcatcg gggatctcaa
     3181 atcccaccca ttttacgggc acatcaactt cgcggcggca aggtttatct aataaagtac
     3241 aaatagcaag tgaatttggc tcacgtaact tgagaatctc ccctaccttg cttaaggtga
     3301 agccagtatc aataatatct tctacaatca atacatcttt accttgaatt tcgccatcta
     3361 aatcttttag aattttgaca tcacggctgg attccgtgct gctgccatag cttgatgcgg
     3421 ttagaaaatc cacttctaca ggtaactcta gctttcttac taaatctgcc ataaacataa
     3481 acgagcctcg caataaacca accactacaa ggttttggca ctgtttttgg tgatagtgtt
     3541 gattgatttc ttttgctaat tcattgattc ggtttaatac ttcttctttt gaatgtagcg
     3601 tttcgatatg atgtttttcc attgatttct ccaaataaaa ttgattacaa gcggccgttt
     3661 ttactcgcct gaaaccatca ttttttctaa taagattgaa cctgtttgga tatttgagcg
     3721 gtgttcaata tcatcgccta ccgccactaa atttttatac atatcttgca gttgccctgc
     3781 aatggtaatt tccgctacag ggtattgaat ttcaccgttt tctacccaaa atcctgctgc
     3841 acctcgagag tattcccctg ttacgctatt aatcgcagaa cctagcattt ccgttactaa
     3901 taatcctgtt cccatttcct taagtaacgt atttaaacca ccttgacgat ttggtttaac
     3961 taaccagtta tgaataccac ctgcgtgtcc tgtacttttt aaccccattt tacgccctga
     4021 atagctagtc attaaatacg tttgtagcac gccatcagta ataatttcac ggttttgggt
     4081 aattacacct tcactatcaa acgcagaaga ggctaattga cgcaacaaat gcggacgctc
     4141 tgaaatcgca aaccattcag gcagaatctg ttcgcctaat ttatctaata agaaacttga
     4201 tttgcggtat aatgcaccgc cactaatagc tccggccaaa tgccccacta aaccggttgc
     4261 cacatcgtta tagaaaatca cagacatttc gccggtctta attcgttgcg gattcaatct
     4321 atctaccgct ttaattgcag cttgctcccc tacccatttc ggtgcttgta atttatcaaa
     4381 ctcacggaaa atggtgtatt cataatcacg ctcaagctga tcttcataag ctgaaatcac
     4441 gctacaagag agtgaatatc ggctcgacag gtaactctgc aacattccgt gcgtattgcc
     4501 ataaacacgc acgccactgt gagaattgaa agttgccccg tcactattca caattttttc
     4561 gtctgcattt aaggcataat gctccgcttc aatcgccaat tcgactgctt gatcaactga
     4621 aatatccgct tggtggtaca attccaaatc ttctgcctca aaggcaagca attctttatc
     4681 agcaagcccg gtacaagcat cttctgaggt atattttgca atcgcaagag ctgcttcaac
     4741 cgttttttga atcgactctg gctgaagatc ggaggtggaa gcattacctt tgcgtttgcc
     4801 taaataaacc gaaataccga gagaaccatc gttattgaac tcgatgtttt caacttgctc
     4861 taaacggctt gaaaccgaaa gcccggcaac tttagtcacg cctacttccg cctctgcccc
     4921 agcctgtttt gcaaaattta aggcaaattc gaccgcttgt cgtagctcct gttcttgttg
     4981 taacaaggtt tgtttatctg taattgacat tttgttccat tgattgattg cattgatgaa
     5041 tatattctaa ctcaaatttc tgttagaata cggcattttt tagagtttat gtaatgaaag
     5101 gataaagaat ggctaaaaaa cggagcaaaa acgaaattga ctggacagat gaggaagaag
     5161 aaatcatctg ggtcagcaaa agtgagataa aacgagattc tgaacactta aaaaaaattg
     5221 gggctgaatt gatcgaattg accccacaaa atttggaaaa aattccacta gacgatgatt
     5281 taaaagaggc aattcgccaa gctcaaggct ttaaaatgga ggctcgccgc cgtcaaattc
     5341 aatttatcgg caaattatta cgcaaccgtg accaggagcc gattcaagaa gccttagata
     5401 aagtgaaaaa tcgccataat cagcaacaag ccctattaca taaattggaa ttagtgcgta
     5461 atcaactgat tgcaatgggc gatgcatcat tagataattt attgacggaa tatcctcaat
     5521 tagaccgcca acatttgcgt aatttaattc gtggggcaat taaagagcgt gaagccaata
     5581 aaccggcaaa aaattaccgt gaaatttatc aatatttaaa aactgaaatc gtggagtgat
     5641 tattatggag tacctatcaa ccattcttaa agctcatatc ggcttagctt atattagttt
     5701 aattttatta ttaacccgtg gatttttatc gtcaaagatg gtggattggc gacaatataa
     5761 aattttgcgc attgccccac acgcagttga taccttctta cttatcaccg gtattgctgc
     5821 tgtcgctatt ttcttagctt atgatttttt caccttagca caattcagtt ggttgctacc
     5881 aaagttactc ttcttagtac tttatattgt atttgcgaca aaagcgttca aaaaaggaca
     5941 accgttttcg ctcaaatttt atctgttagc cgtagtctca ttcttattaa tgatgctaac
     6001 tgccactttt cactaaataa gggaaactat gatcgggcct tttgtgaatg ccggtgcaat
     6061 tattttaggg ggcgtgctgg gtgcttgttt agggagtcac ctgcctgaac gtattcgcac
     6121 tacgttgccg ctggtattcg gcttatgctg tttcggctta ggtatgatgc tgactgcctc
     6181 agtaaaatat atgtctgcgg ttgccttagc attgatttta ggcacgatca tcggtgaact
     6241 gatttattta gaaaacagaa tcggtaaagt tgccggttta gctcgtggtt taattgaccg
     6301 cctattccca ccggtgcata gtctttccca agaagagttt ttagagaaat ttattgctct
     6361 gcttgtactg ttttgtgtga gcggtaccgg catttttggt gcaataaagg aaggaatgac
     6421 aggcgatcca agtattcttt acattaaatc gattctagat ttcttcaccg caatgatttt
     6481 cgctgcttcg ttaggctatg ccattgcggc gattgcagtg ccgttgatta ttgtgcaagg
     6541 gattttaatt ctactggcaa ccgtgattat gcctttaacc actgccaata tgatggcaga
     6601 tttctccgca accggcggtt tactgctatt tgcaaccggc tttcgcattt gtggaattaa
     6661 aaactttccg gtcgcaaata tgctaccagc actactcctt gcgatgccga tgtcttattt
     6721 ctgggaatgg ttggtacatt aatgatgaaa aaacgtatta ttgtcggcat tagtggggca
     6781 agtggttttc aatatggcta taaagtgctt gaactgctga aaccgttttc agaaattgaa
     6841 acccaccttg taatcagcaa aggagctgaa ctcactcgta ctctcgaaac ggattatacc
     6901 cgagaagctc ttcatgattt agctgatcaa atacattcgc taaacaatgt cggagcaagc
     6961 attgccagtg gttcatttaa aaccgaaggt atggtcatcg ccccgtgttc tatgcgaacc
     7021 cttgccgcta ttgccaacgg tttgagcgat aatttgctga cccgtgcggc agatgtggtg
     7081 ttgaaagaac ggcgtaaatt ggtattaatg gtgagagaag ctccgctcaa ccttgctcat
     7141 attgacaata tgcgaaaagt cacagaaatg ggcggcatta ttttcccacc cattccggcg
     7201 ttttaccaaa agccaaccag ccttgacgag atggtcaccc acagcgtaag ccatgccctt
     7261 tccctgttgg atattgacat tccaaatacc ccacattggg gagaataatt cggcttatct
     7321 tttgcttttt gaaatgctag aatacctgat aaaaactatc aggtattttt atgcacaatc
     7381 caatcccgac ccatatttta gatttcattc aaactaacca cgttgtcaat attgcagctc
     7441 ataccgaaca ggatttttgg gcagcaaatt gcttttatgc ctttgaccaa gaaaatgttc
     7501 gcttgattat cttaaccgcc aagaaaacca gacacgctgg cttgatgctt gaaaacccac
     7561 atattgtcgg cacaatttgt gggcaaattg agaagatcaa cgaaattgaa ggtgtccaat
     7621 tctccgctac cgccgaatgt ttagaagata aacaagccga aaaagccgct ttgcaaattt
     7681 attaccaaaa acacccgctt gcacggctta agcctagcga tgtttgggtg ttatcattca
     7741 ataccatcaa gcacaccggt aataaactta tgtttgcgaa aaagacgatt tgggagagaa
     7801 atataatttg aagctcaaat aatgccttta gccttatccc gtttgatttg gcttggtgtt
     7861 atcccaaaag ttcgcttaaa tgccgttgaa aaattctccg aattggcata tccggcaaat
     7921 tcagctgctt gtgtaatact ctgcccttgt aatagtaatt tataggcttg ttctaattta
     7981 gaacgcctta aatacgcaaa aatagaggtt ttgtggtaat gctgaaattc attttgtaat
     8041 gtggtcacat tggtatggaa atatattgca atctgcttca aactccagcc gtcaaattta
     8101 ccgctctcaa gcaattctgt taactgttgc acccgatctt tttttaaccg gggagcctgt
     8161 gtcagctgag aaaaagcact tgctaataaa gctaatagat taccttcttt ctcaagtaac
     8221 ccaaatggtt gcatttcctg ctctgacaca atatcgtgaa taagttttaa catactctga
     8281 gtcaaaataa tttggtgggc ttttaaatgc tgtttaaagt gatgatagct tgccaaattt
     8341 aactggcttt ctattagcca tttagggtag agaaagataa caagctcttt ttgaagttgc
     8401 cctttcctaa aaattttacg ccccatttca gctctattta gcggtaaaaa tgcggcttga
     8461 ggttttaaac ttgcatctaa ttcaaatact tccgaattaa aatcaatttc cgatcgacca
     8521 ctcaacaata taaccaatct tagtccggct tcaaattccg caggttcttg ctctacggtt
     8581 tcagtaactg aaatctctgt atatttcagc ataagatctg aacgtagtcg gtataaatgt
     8641 gaaaaacctt ttatttggtt agcttcatca atcaagattg ttttcatcat taaaaacttt
     8701 ttttcgcata gtcaaaattt tattttacaa aggttttttg cataaaaaca agatattatt
     8761 atattcaata atcattctta tttaaggata aactaatgaa aataaaaaaa tattcacttt
     8821 ctctaatcac tttagcgatt gtagctcctc aagtattagc agaaacaacc tctcaagcag
     8881 aactaaatgc tattgaggtc aaagagaaat tggcagctac caccggctat attcctgttt
     8941 atacgactgt aggaacgaaa acattaacct ctttggctcg tacacctttt agtatcaatg
     9001 ttgtctctga tgatttaatg catgaccaag ctgttcgttc tgttaccgat tcagtggctt
     9061 atacctccgg tatgatgggt ggctatcgtg gtaacaattc gcttatcgaa atctccattc
     9121 gaggcattgg caataaaagt gatggcagta caattccgac ctatttaaac ggttctcgct
     9181 accaaactgc atttgaaatc gatccgttct tcttagaaag tatcaatgtg attaaaggtc
     9241 caaactccat tttatacggg caagctaatc ccggtggcgt aatggatatt atcaccaaaa
     9301 aagccggcag taacccacat cgccatttgc aatttgtggt gggaaaccat caacgatacc
     9361 aaatcgggct ggatattgaa gaaaatctct ccaatacctt atccgctcgt ttaatcggtc
     9421 aattagaacg aacaaactgg aatacctaat ttgtaaaaga aaaaggcggt gcttttgctc
     9481 caagcatttt atggaaaccg actacaaata cagaacttaa tgtttacgct tactatgcaa
     9541 aaaaaccgaa agccggtgat cgtaactttt taccgaaaga aggaacgatt aatagcgtaa
     9601 acgggaagga actaccctat gatatgttcc tcagcgatct gaactatcac ggtttaaaag
     9661 ccgaacaaat gcaagtaggt tacagtttct cacataaatt tacgccaaac ctaacgttcc
     9721 gccaaaatgc aagttaccat aatggcgaag agaatttcaa aaatctagtt tattggggcg
     9781 atgtcggttc ggttttagaa cgtagagctc gccattggga tgtcaaaacc caagaaatca
     9841 acttagataa ccaattagaa tgggtattta gcacagcaaa tataaatcat accttgttag
     9901 ccggtattga ttataaacga gtgcgtaaag atcttgataa ctatatgggg attgcccctg
     9961 attttgattg gcagaaccct gtttatggcg tgaccgttac tgagcctagc ttattttcaa
    10021 gtgaagtgaa gcatttaaaa caacttgggg tttatctaca agatcaaata gaaatcggta
    10081 attttgactt cctgttaggc ggtcgttacg atcgagcaaa aaacagcaac caagatcgtt
    10141 tgaacagtaa aacagagaat aaccaagaag gaaaatttac ttggcgtaca ggcgtagttt
    10201 acaactttga aaacggtatc gctccgtata tcagctacag cacttctttt gtgccatcgg
    10261 ctgaaaaaga tgctcaagga aatttcttaa aaccaacaac tgctgggcaa tgggaagtgg
    10321 gaatgaaata ccaacctacc caagacacct tactgacctt agcaggattt aaaattacac
    10381 aaaaagattt agccaattat caatggcaaa cccgctctta tgagcaaatt ggtgaagtgc
    10441 aaaccaaagg aattgaagtg agtttaaatc agcaattatc cgataaattt tcaatagcgg
    10501 cttcttatgc ttacttaaaa aaagagatta ctgcagataa agatggcacg acgattggaa
    10561 aaacgcagtg gggagtgcct cgccatcaag catctctttg ggcaaaatat aaattctttg
    10621 ataagctgac cgccggtgta ggtgtacgct atatgggaac gacttttggc gataaccaaa
    10681 atacttttac cgtaccggca tacacacttt acgatatgat gctagcttat gattttatgc
    10741 ctaacttaaa cttacagctc aacgcacaaa acctgacgaa taaaaaatat gtcgcaagct
    10801 gtgccaataa tttttcctgt ttctatggaa aagatcgcaa tttaagtgca acgttaaact
    10861 atcattttta atctcaacag ccctcaaatg agggcttaaa cttttgcaaa aaatatgaaa
    10921 aaaacgaccg cttgtattct tacttttttg gtttcatctg tgctttatgc taacaatata
    10981 accattgagc ttaaacagaa tgattttgtg caaggcaaat tgattcagaa ggctcaacag
    11041 ccactttcct tgtcgattat ttttcctgac caaagctctc gcctgctggc tcaaaatgtc
    11101 tttggtgaac aagattttat gtttaaatca gaactaatcg gcacagctac tttttctatt
    11161 ctagcgaatg gtgcaaccgt ttcagaccaa gattttacct taacgattga gcggcatatt
    11221 ccaatctcgg cacaaattgc tccacctaaa gtaattgaaa atacacagct tgaagaactc
    11281 agccaaaaaa ttgcaaaaaa tccagaaaaa cagaccgctt taattaacga tttttgggat
    11341 aaagcaaaac aagccggcac accattgatt gaaccattgg acgaacagca aagccgtgta
    11401 acttttttat ggcgtggagc aacgaaaaat gcccgtattt ggggcggtgt gagtactgaa
    11461 cacgatttta tgcaacgctt tggtgaaacg gatatatggt ataaaagtta tatagtgccc
    11521 aatgacactt tagtggaata caaattagct ccagatgtgc cgacattgcc cgttgatgag
    11581 aatacccaac gcagagcgtt actggctacg gctcaagccg atccactcaa taaaacagca
    11641 tacttcgaga aaatcggaca aaatattcat aataccgata aattcaacta cgcttcgcta
    11701 cttaaattgc caaacgcacc tactcaatct tttttgactg aagctccaaa tattgcaaaa
    11761 ggtaaactgc agcagttgat ttttgagagt gcaacactcg gcaataaaca cagattattc
    11821 gtctatctgc ctgacggttt tagtgcagaa aaaaactatg cggttctcta tttatttgat
    11881 ggtgttgaat ataccgaacg agtgccaact aaaaccattt tagataatat gatcgctcag
    11941 aaagtgattc tgcctactgt agcggtgttt atcgaaaatc catcgagtga atcaagacgt
    12001 gtcgagctgc ctgccaatcc catatttacg caagtattgg caaaagaact tgtacctttt
    12061 gttgaaaaac agctcaatat aaaaacaaag gagcgaatta ttggcggctc tagctatggc
    12121 gggctatcct ctgcttacac cgtactcaac tatcctaatg tatttagtaa agcattgatt
    12181 ctatccggtt cattttggtg gcaacccaaa ggcacaccta gtgaacaaag ccactatatt
    12241 gctcaacaat ttatccaaaa agaaaaatta ccactctgtt ttttcatcag tgcaggtttt
    12301 tatgaaagcg ggaaatcggc tatttgtaag cggtcgaatt attttgcata gaattacact
    12361 caattttgca tagataaaaa ttaaaaacta tgcaaaa
//
LOCUS       DANMGB010000067        12359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.067, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000067 DANMGB010000000
VERSION     DANMGB010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.067"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..516)
                     /locus_tag="PXG19_001379"
     CDS             complement(<1..516)
                     /locus_tag="PXG19_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6066674.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEY"
     gene            615..866
                     /locus_tag="PXG19_001380"
     CDS             615..866
                     /locus_tag="PXG19_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6066675.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1062..1262)
                     /locus_tag="PXG19_001381"
     CDS             complement(1062..1262)
                     /locus_tag="PXG19_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6066676.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1321..1833)
                     /locus_tag="PXG19_001382"
     CDS             complement(1321..1833)
                     /locus_tag="PXG19_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL6066677.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXG19_001383"
     CDS             complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXG19_001383"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL6066678.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3059..3199)
                     /locus_tag="PXG19_001384"
     CDS             complement(3059..3199)
                     /locus_tag="PXG19_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066679.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3293..3865
                     /locus_tag="PXG19_001385"
     CDS             3293..3865
                     /locus_tag="PXG19_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL6066680.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3967..4185
                     /gene="cspD"
                     /locus_tag="PXG19_001386"
     CDS             3967..4185
                     /gene="cspD"
                     /locus_tag="PXG19_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL6066681.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4275..5189
                     /locus_tag="PXG19_001387"
     CDS             4275..5189
                     /locus_tag="PXG19_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6066682.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5308..6168
                     /gene="araC"
                     /locus_tag="PXG19_001388"
     CDS             5308..6168
                     /gene="araC"
                     /locus_tag="PXG19_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL6066683.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6355..7329
                     /locus_tag="PXG19_001389"
     CDS             6355..7329
                     /locus_tag="PXG19_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6066684.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7384..8874
                     /locus_tag="PXG19_001390"
     CDS             7384..8874
                     /locus_tag="PXG19_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6066685.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            8858..9817
                     /locus_tag="PXG19_001391"
     CDS             8858..9817
                     /locus_tag="PXG19_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066686.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            9820..10770
                     /locus_tag="PXG19_001392"
     CDS             9820..10770
                     /locus_tag="PXG19_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066687.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            10783..>12359
                     /locus_tag="PXG19_001393"
     CDS             10783..>12359
                     /locus_tag="PXG19_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL6066688.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKA"
BASE COUNT         3629 a         2473 c         2392 g         3865 t
ORIGIN      
        1 atattcaata tttttaaaac gctcatttgt ttctttagct gtaatcttac caagcagatt
       61 taccagatta ttacctgcct catcgcttgt accggcagtg acacgagcct gttggtttgc
      121 aattaaaagt cgctcaaagc cctcaatact actcaaaccg gcttgttttg cagctgccat
      181 ttgttgaggc aaccaacttg ccatatatgc aagctcaaaa ctacctgctt gcccggctgc
      241 aacagccata tccaatgccc gcccaatatc ctcttctttg atgccaaatt gttgcataga
      301 ggagatcgca atttttgcca tatcctccga gcttgcccct gttgccaccg cccctttctg
      361 caaagtaggt aatagactca ttgcggtttc ggctttgact gtaccggagg caatgagcgt
      421 atcaagcgta actaacgcat cctcttttgt gccaccccca accttatccg cctttttatc
      481 aagtttttgg tttacttctt tgagcgagtc taaaatatcg tccagctttt ccttaagagc
      541 cttattcaga cagcctatta agcctaggcg taaaagccca taattgtggc gtattttggg
      601 ctaatggcac atcaatggcc ccgactatca gcgatggtga tcaaatgtta gtggatttca
      661 gcaaaaaaga agcccgtgga gacgataaga tttatcttgt gcaaaatggt gaaagcgttt
      721 gggtaaaacg tgtaagaaaa gtgtgggact acgttgaatt gattagcgat aatgagtcct
      781 accgcccaat ccgaattaca gcagacgaag ctcaaaactt acaaatcatc gggcaggtag
      841 tccacatcgg acactcttta gtttaaaaca gatttaaaat agttttaaaa ccgatcaaac
      901 ctatgcaaaa aatatcgcaa aaactgccca tttttttcta atcctgctca ttttgttttt
      961 tgcatagccc caaccaaaca ataacggcga acccttgtat tcacggggct cgccgttatt
     1021 tttccgccca aatttttttc tttctctcta tgcaaaaaag atcagtaccc cacattttca
     1081 accgcttgta gctcacaaag ccaaccttgc tctttggcaa gcagttcaaa atcggtaagg
     1141 ctactctgct gattgagtaa aatttccaag ctatcgccct ttttaagatc gttcatcgct
     1201 ttttttgcca ttaataacgg caaggggcag gcatagccgg ttaaatctaa aacatattgc
     1261 atagcgaaat agggaataaa gaaaaagggc gaatattgaa attcgcccaa tcacaaaaga
     1321 ttagagttta cggcggtctg ccatcacttt gcccatagcc gataatttgt cttgagctaa
     1381 atgctctcgc ccaagctcaa agagtggctc ttcaatcgca atatgcacat cataacctgc
     1441 cacaaaacgc tcaattaagt ctctatccac attttcacgt ttacctgcga gcagatcttc
     1501 aagctgtgcc gacaaatagt cccaattttt atgtaaatga acgtgctggc gttccagttc
     1561 gtctacctct gcttgagctt gtggttgcac cttaataagc tcagggaaga aatcatcttc
     1621 ttcatcttcg tgatgtaaag gggcagaaat gttgaagtag ttcaaaatct gctgcacgtc
     1681 attcttcact gcttggttta ccccgttttt ctcaaggtaa tccggcaaaa tttgcaactg
     1741 tttacagaaa ctttttactt tgctgtggca agcataaagc atatcaatcg gctctgccca
     1801 gcttgcaaag gtttgtggtt caagttgttg catatacact ccttgttatt tctgttcttt
     1861 tacttcagat tgtaaaggtg gcacttcttt gccaattcgg gcataaaatt ccactacaaa
     1921 atcatcaaaa cgatcttctt cgatggcctg gcgaatttct gccattaggc gttgatagta
     1981 gcgtaaatta tgaatggtgt ttagtcttgc ccctaaaatc tcgccacatt tgtctaagtg
     2041 atataaatag gctttggtgt agtttttgca agtgtaacaa tcacattcag gatcaagcgg
     2101 tgtggtgtct gcacgatatt tcgcattacg aatttttaca atgccgttgg tcacaaataa
     2161 atgtccgtta cgggcattgc gggttggcat tacgcagtca aacatatcaa taccacggcg
     2221 aaccccttcg actaaatctt ctggcttgcc tacacccatt aaatagcgtg gtttatctgc
     2281 cggaatttgc gggcaaacgt attctaaaat gcggtgcata tcttctttag gttcacctac
     2341 cgccaagcca ccgactgcat agccatcaaa gccgatttca actaattttt ccaccgagac
     2401 tttgcgaagt tcttcataaa taccaccttg aataatgcca aataacgcat tcgggttttc
     2461 aagttcatca aagcgatcac gagaacgttt cgcccaacgt agtgacattt ccatcgattt
     2521 ttttgcataa tcaaaggttg ccggataagg agtacattca tcaaaaatca ttacaatgtc
     2581 tgatccaaga tcgtattgga tctccattga tttttccggc gaaaggaaaa ttttctcacc
     2641 gctaatcggg ttttggaaag ttacgccttc ttctttaatt ttacgcagtt tacctaagct
     2701 aaaaacttgg aaaccgccgg agtcggttaa aatagggccg tgccattgca taaaatcgtg
     2761 caagtcaccg tgcatcttca tcacttcttg ccccggtctt aaccataaat ggaaagtgtt
     2821 gcctaataaa atttgcgccc ctgtcgcttt aacttcttca ggagtcattc cttttaccgt
     2881 gccataagtg ccaacaggca taaatgccgg tgtttcaacg tgaaattcgc ctttcgggcg
     2941 gttaaaagtt aaacgcccac gacgagcgtt accacttgtt gtttttaatt cgtacttcat
     3001 tttaatccac aaataaacag ttcgtgaaag cggtcaaaaa ccaccaaaaa tttaccaatt
     3061 agaatcgaaa gtcggtgccg acccctaagc cgattccaac gccgttagag ccaccaccgg
     3121 ctccaatact gccacccaca ccggttgatg agcaagcagc taacactaaa atgccaacgc
     3181 ataataagag ttttttcatt ttttgctgtc ctaaacgaaa aagagagtct atgatagacc
     3241 caatgtattc taacctgttt aatggattaa acctaatttt aaagggtaaa ttatgaaaat
     3301 tttacgtaaa ttcgctgctg tatgcgttgt ctcaatggct atgctctctg ctaacgctaa
     3361 tttgctcact attagcgagc aggaaatcaa cgactattta gccaccaaat tagctgaaaa
     3421 aattccttta aaagataaag tcggtattcc taaattattt gaattggatt atcgcctgca
     3481 ttcacttacc agccaaattg gcagaaccga ggaaaaaaaa gtagctattt ctggcgttgt
     3541 tgatggactt ttaaacgcaa aaggcaagaa atatgctgcc tctatccatt taaatatgga
     3601 taccacgcct tattatgatc cacaaaaagg ggcattattt cttaaagatg tcagattgtt
     3661 aagttggtct gcaacaccgg ctaaatatca agcagagctg caaatgtttt tgccggtgtt
     3721 ggctgatgga ttaagtagtt ttttaaacag tacgcctgtt tatactttag atgaaaataa
     3781 aacaaaagaa gcaatggtga aaaagttcgg caaagccatt gtagtagaaa atggtaatat
     3841 caagctagaa accactattt tttaaataat tttgtgatct tcgtctaatt tttacacttt
     3901 gatagttgag cttttacgcg ttttatttac aatccaaata tcgccattca ttatttggag
     3961 agttctatgg atatcggtat tgttaaatgg tttaacaatg taaaaggatt tggttttatt
     4021 acatcggatg tatgtgaagg agacattttt gctcattttt ctgaaattca agcagaaggt
     4081 tatcgctctt taaaagtcgg ccaaaaagta cagtttgaat tagttcaagg agagcgaggt
     4141 gcctcagcct caaatatcac gcctataagc gaaaaaacgt tataatccgt cgttaataaa
     4201 attattgtta taaccatact ttattagatt ttaaagctca gcttttacag ctgagccatt
     4261 tttgcttttt gaatatgcct tcctcttatc aattagtctt aattaaccta ctttatatct
     4321 tcggtattgg tctaaatatt gtactgctta ggtttctcag tttgcatttt gacccattaa
     4381 ataataacgg tatacgtttt cttgttggtg ggttcacctt attatttttc attttatgga
     4441 gattccgcac atcgctgtct cagctgatta aaactccaaa attgattgcg atttctctat
     4501 ttgtcgggtt aatgatgtcc gcaaatatgt atttttggct aaaaggggtc aaaattacaa
     4561 atgctgttac cgtctctatt tttggggtat tagctatgcc atttggtgtg attattgccg
     4621 ccatattctt tcaagatgaa agagaacgca ttaaaagcaa agctttctgg ttcggctcaa
     4681 ttttaacgat catcggttca ctcggattta tttggcacgg gaaaacactc tcgattggcg
     4741 aaggatttat tcttggttct gtgttcttat ttttgtcgat cattatccgt aatatacaaa
     4801 acctagttgt aaaatttgct cgagaactga acgtattaac cctaagttgt gtaacatctt
     4861 taactacttc actctcgagt ctattactta gccaacaagc aggtaaattt aatgagcttt
     4921 ttactgcacc aaactggcta ctattctctc tgatggttgc tggtatttat gcgattatga
     4981 tcggaatggt attaaccttt cacattatcc aaacccaagg actgataacc taccaagtat
     5041 tggaactatt aatgccggtt tcaacagcca tcattgctta tattttactg gacgaacgta
     5101 tttccattgt tcaaatgggc tttgcttgta ttgtgatttt aggctcaagt atcgccttaa
     5161 agttagtaaa atatcctaag cactattagg atctttgcta attaatattg gtaaaattac
     5221 atttggttta ctaatctgag cgttcattca ttagtaatga taaacaagcg gttatttttt
     5281 gttatttttt ggtaaatact gatagtcatg tataaaaacc tttctttgct ttcaccgact
     5341 tatccatttg accttgaatt catcgccggt cttactcaat gtgagaaagg taactatctt
     5401 gattctattg tcgataggca acaaggaatg cacggttata tgcttcaatt aaccactttt
     5461 ggtcgtggtt ctgtttttga tggtaagcac gtttttaccg ctcatcgagg gcagttactc
     5521 ctctttacac ccaatgccgt tcaacactac caccgtcacc cggaaagcca atattggcac
     5581 tacaaatggg tctattttca gccgaatcct aaatggaata aatggctgaa ttggtcagat
     5641 atggaagaaa aaataggacg tatcaccatt agcgatgatc gttactttca ggaaattagc
     5701 caacttttca gtaaaattga attagaactt aaatccagta aattttttaa agaagatatt
     5761 gcaacaagtt tgttggaata cttacttatg aaatgtattt ccgccgagaa aattgaggtt
     5821 attcctgtca ttgatcaacg cattttgaca gtttgtgatt taatcttaac gaatttggct
     5881 aaaaatgaga gcttagaagc aatggcagaa aaagtatttt tatcgccatc tcgcctctca
     5941 catcttttca agcaatcgct ggggatcagc ttagtgcaat ggcgggaatt acaacgcatt
     6001 tccgaatcca aaaaattgct ttatttctct aacatctcta tctctaatat tgcgaaatcc
     6061 ttaggctatg aggattctct ctacttttcc aaaattttca aaaagcatac cgggctgtca
     6121 ccctctgagt ttagaacctt agaacggcgt aaagacagtg aaatgtgatc ttgatctcac
     6181 tttactttgc atagcagaat tttccatatc gataacaaaa agttacctgt ttttctctca
     6241 ttcaaaagca taagatacaa acagctttaa tagtgctgtt tctattagag aagggatatc
     6301 aagctctgtg agtgatattc agtgaaataa cttcttatgt atgagggaag aacaatgaaa
     6361 aaaccaacgt tcaagcacgc attattttca agtattttag ctttagcctg ttacggctcg
     6421 gcatttgcca atgatgttgt taatatctcc aaaattgacg gtatgccgtg gtttaatcgt
     6481 atggcagagg gtgttgtgca agcaggcaaa gataacaata tcaatgctta tcaagttggt
     6541 ccatcaaata ccgatgcacc acaacaagta aagttaattg aagatttaat tgcgaaaaaa
     6601 gttagtgcta tttccatcgt ccctaacgat gcaaatgcct tagaaccggt actgaaaaaa
     6661 gcgaaacaga acggtattgt ggtattaacc aatgagtcag tcggacaacc tagtgccgat
     6721 tgggatattg aaattatcga taatgcacaa tttgcagcag actatgtaga agaagtagca
     6781 aaagctatgg gcggaaaagg cggctatgtg atttatgttg gtggtttaac cgtgcctcaa
     6841 cataatctgt gggctgattt attcgtgaaa taccagaaag agcattatcc ggatatgttt
     6901 gaagtgacca gcagaatgcc tgttgccgaa aatattaatg atgcacgccg taccaccatt
     6961 gatttagtga aagcccattc cgatcttaaa gcggtcgttt cttttggttc acaaggtcct
     7021 attggtgcag ggttggcagt gaaagaaaaa cgcttaaaaa ataaattaaa tgtcttcgga
     7081 atgatgattc cttcccaagc agccaattta attaaaagcg gtgatattac aatgggaatt
     7141 acctatgacc cggccaatgc aggttatgct ttagctgctg tcgctgccaa agtattaaaa
     7201 ggcgaaaaaa ttgaggatgg attagagatc ccaacggtcg gtaaagccaa agtagatagt
     7261 gagaaaaaac tacttcaatt ccacaatgtg ctgaaagtca ccaaggaaaa tatcgataaa
     7321 ttatattaat ttgcttgaaa tatgggctga tagccagccc atattttccc tcaggaggca
     7381 cttatggcat ttatttcgat gcggcatatc agtaaaacat tccacggcat aaaagcatta
     7441 aatcaagtca atctctcatt agattatggc gaagcacttt gtcttgccgg tcaaaatggc
     7501 tgtggaaaat caaccttgat caaaattctt tccggcgttt atcaaccgga taaaggggct
     7561 gaaattcaaa ttggtgcaac ccaatatacc aagctgacac cacaggaatc gattgataaa
     7621 ggtattcaag tgatttatca agatttagcc ctcttcccca atttaaccgt ggcagaaaat
     7681 attgccatta acctgcaccg aaaatttggc tgggtgagtc aagatcacat tcatcaggtt
     7741 gccctcactg ctattcaaag cattaatgca aatctagacc tgaatgcaat attagaagat
     7801 ttaccgatcg ctcaacaaca gttagtcgct atttgtcgag cgttagcaca aaatgccaga
     7861 ttattgatta tggacgagcc gactgcctca cttactgcaa aagaggtcaa agatctgtta
     7921 gatgtcgtca tcaaacttaa aagcaaaggc attagcatca tctttgtcag tcataaattg
     7981 caagaagtaa tgagtgtttc cgatagcgta ttagtgctga aagatggcaa tatggttggg
     8041 caatatccta tccgtgaaat gaatgaaaaa cgccttggtt tcctaatgac tgggctggaa
     8101 atcgattaca agcggttaga tttgccggat tttttgcaaa gaaaaaccgt attggaagtc
     8161 cgcaatttaa cgctgcctca tcagtatcaa gagattaact tttcgctacg agaaggggaa
     8221 attgttgccc ttacaggatt gctcggttca gggcgtactg agctttgcct aagtttattc
     8281 ggcattactc aaccacaatc cggcgatatt ttattaaacg gtgaaaaagt gatatttaac
     8341 actaaccgtg atgccattgc caaagggatt gcttatgtat cggaagatag aatgcacacc
     8401 gggctgatta tggcagagtc gattcatcac aatattattt cgactatttt tcacaaaatc
     8461 accgataaat tacagattat tcaatcctcg aaggcttatg caagtagcca agccttgatt
     8521 gattcattaa agattaaagt atccgattca gatttgcctg ttaataccct ttccggaggg
     8581 aacgcacagc gagtttcgat tgcaaaatgg ctggcaatcg accccaaaat tattatttta
     8641 gatgccccga ctattggggt cgatatcgcc aataaagaag ggatcttcca aattattaaa
     8701 tcattggctc agcaaggcat tgcagttatt tttgtgactg atgaagtgga agagacctac
     8761 tacaacagcc atcgggtaat tgtaatgaaa aaaggtcgca ttgttgatga aatcttgccg
     8821 gcatattcca gtgaaaaatc gattgcggag gttatttatg aaaatcagca ataatcatat
     8881 tctttccagt acgttactga ttttaatcct attattaacc ctatttactc gtgattttgc
     8941 aactattgag aacctttatg atgttgtaaa taattacgca atgttaatga ttttagcttg
     9001 tggtttattt gtggtattgc tgtctggcgg cattgatatt tctttccctg ctatcactat
     9061 tatttcccaa tatgttatgg tcactctgat cggtaaatat gatgtaggat ttgccggcgt
     9121 ttttgttatt tcttccacca tcggcatatt attaggtttt attaatgctc tatttgttaa
     9181 tcggcttagt gtcccttcca ttattattac gatctcaaca ctcaatattt tttatggcgg
     9241 actactctat tttaccaaag gtgtatggct ttatgagtat cccgaatggt ttacccaaga
     9301 aatcgtgttc tttaaacaga taactgctga gggagtggaa tttggattat cgtttcaagc
     9361 attaatggct attttggcgg tgatattaac cggcttaatt accaataaac tcactattgg
     9421 tcgaaaaatt tacgctcttg gtggtaatcc ggatgcaacc tcccgtattg ggtttaatct
     9481 cttatttctc catctatttg catacggtta tatgggcttt atggcaggct tggcaggcat
     9541 agtgcaatct tataccgtac aatctgtcgc accggattca ctactgggtt atgaattaac
     9601 cgtcctagct gccgttgtat taggtggtgc tagtttatca ggtggtagag gcaccctgct
     9661 tggtacagta atgggcgtaa tgttactggc gattattcaa aacgggctaa atttaatgaa
     9721 tgtatcgtct tactggcaaa ccattattac cggtatcatc attatcttaa gtattagtgc
     9781 aacagcctta agtcagcgga aaaaacaagg agcataacga tgaaaagtaa actggatcca
     9841 acgattttct atctcttagc actcttcgca gttgcagtta tcgcctttag tattttcatt
     9901 ccggatattt tttggtctgt cagtaacttt caatctatgg catcacaaat tccagtatta
     9961 ggtattttaa ccctagcaat ggcattaccg atgttaacag gtggaataaa tctttccatt
    10021 attgccggaa tgaatgcttg ctcattaatt attgcctact ttattacgca atataccggt
    10081 atttcttggt tatttattgc tattttatta agcctttgct gtgccttagc cattggatta
    10141 ctcaacggca cattaattgc cattattcgt gtttcaccaa ttttggcaac cttaggcaca
    10201 atgactttaa ttaacggcat taatattcta gtcactaacg gttcaaccat tgcgaacttt
    10261 ccggaaacaa tgttgagtat taatgcttca gcctttttat ggattccgct acccattcta
    10321 atctttctct ttcttgctgg gctgatttgg tttttcttag aaaaaactgc aatgggtaaa
    10381 gcggtttatt tcatcggcaa taatgaaaaa gccacctatt attcgggtat taataccaaa
    10441 aaagtgctga tttgggttta tgttatctcc tcaattcttt gtgtatttgc agctattttg
    10501 atgatgtcta aactcaattc tgcaaaagcc tcttatggtg attcctattt gttgatctcc
    10561 attttagccg cagtattggg cggtattaac cctgatggag gtaaagggaa actattaggg
    10621 attatgctcg ccttagtttt attacaagtg attgaaagtg gcttaaatat gctcggcatt
    10681 agcagttaca ttacaatgat tttatgggga agcttattgt tattctttat cttcctccaa
    10741 aaaaatcgcc ttttccgact aacacagtaa tggtggtaga ttatgcaaaa tgaaaaacaa
    10801 ctcattgaac aaggtaatac tgttattggt attgaattgg gctcaacccg aattaaagcg
    10861 gtgttaatta gctcagatgg gacgatttta gcaaccggtg gggcggattg ggaaaatcga
    10921 ctgattgacg gtatttggac ctatcatcaa aatgaaatat gggaaaaact acaagctgct
    10981 tatatggatt taagcaagac agtcaaagaa aaatatcaca caaccattcg cacagccaaa
    11041 gcattgggaa ttagtgcgat gatgcacggc tacttacctt tcgataaaca cggaaatccg
    11101 ctggttgcct ttagaacttg gcgaaacaac attaccctaa cctcatcgga aaaattgacc
    11161 gcactctttc aatacccaat tccgcaacgt tggagtattg ctcatttaca ccaagcattg
    11221 cttaaccaag agcctcactt gccggaaatt gattacctga caaccctctc aggttatgtg
    11281 cattggcaac tgaccgatca caaagtgtta gggattggcg atgcttccgg catgttcccg
    11341 atagatactg agttgaaatc ctacaatcca acaatgctgg ctcaatttga tcgagccatt
    11401 gccgactacc gtatgccttg gaaattggaa gcgattttgc cacaagttcg tgttgctggt
    11461 gaacaagcgg gcaaattaac cgaaaaaggt gcaaaattgt tagatccaac cgataatttg
    11521 caagctggca ttccactttg tccacctgag ggtgatgccg gaacaggtat gattgcaacc
    11581 aactgtatca aagaaaaaac cggtaatatt tctgccggca cctccgcatt tgcaatgatt
    11641 gtgttagaaa aagccctatc caaagcctat tcagagctgg atattgtgac gaccccggca
    11701 ggtaaattag tggcaatggc tcacgctaat aattgcacct ctgatattaa tgcgtgggtg
    11761 aatttattcg gcgaatgctt atcggttttt ggcgtaaata tctgcaccga agaactttat
    11821 gaaatgttat ttctccatgc cttgcaaggc gatgcagatt gtggagggct attatcctac
    11881 ggcttccact ccggtgaaca taatgtcggt ttatccgaag gctgtccggt tttcttgcat
    11941 ccaacgaatg cccattttaa cttagcaaac tttatgcgaa cccatctcta taccgctttt
    12001 ggtgcaatga aattaggaat ggacattctc attaaccaag aaaaagtgga aatttcccgt
    12061 attctcggtc acggtggtat atttaaaaca gaaggtgttg cacaaaaaat tctgtcttcc
    12121 gcactgaata ttccattggc taccgcaagt actgcttcaa atggcggagc ttggggaatt
    12181 gcattactgg cagactttct cagcgtatca gaccgttaca gtttagaaga atatttagat
    12241 aattgcattt tcaacaccac caaactcaat ctggttcaac cggataaaac aatgagtgaa
    12301 ggttatgaac gctttatgca acgttataag caaggcattc ctgtggtaga aaaagcgtt
//
LOCUS       DANMGB010000068        12331 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.068, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000068 DANMGB010000000
VERSION     DANMGB010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12331
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.068"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            1..2079
                     /gene="malQ"
                     /locus_tag="PXG19_001394"
     CDS             1..2079
                     /gene="malQ"
                     /locus_tag="PXG19_001394"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6066689.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(2144..3805)
                     /locus_tag="PXG19_001395"
     CDS             complement(2144..3805)
                     /locus_tag="PXG19_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL6066690.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
     gene            4023..5399
                     /locus_tag="PXG19_001396"
     CDS             4023..5399
                     /locus_tag="PXG19_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL6066691.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
     gene            5497..6300
                     /gene="xthA"
                     /locus_tag="PXG19_001397"
     CDS             5497..6300
                     /gene="xthA"
                     /locus_tag="PXG19_001397"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL6066692.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            6454..7038
                     /gene="lptC"
                     /locus_tag="PXG19_001398"
     CDS             6454..7038
                     /gene="lptC"
                     /locus_tag="PXG19_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL6066693.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            7062..7568
                     /gene="lptA"
                     /locus_tag="PXG19_001399"
     CDS             7062..7568
                     /gene="lptA"
                     /locus_tag="PXG19_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL6066694.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            7580..8305
                     /gene="lptB"
                     /locus_tag="PXG19_001400"
     CDS             7580..8305
                     /gene="lptB"
                     /locus_tag="PXG19_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL6066695.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            8347..8859
                     /locus_tag="PXG19_001401"
     CDS             8347..8859
                     /locus_tag="PXG19_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6066696.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            8872..9735
                     /gene="rapZ"
                     /locus_tag="PXG19_001402"
     CDS             8872..9735
                     /gene="rapZ"
                     /locus_tag="PXG19_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL6066697.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            9818..11002
                     /locus_tag="PXG19_001403"
     CDS             9818..11002
                     /locus_tag="PXG19_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6066698.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            11134..11718
                     /locus_tag="PXG19_001404"
     CDS             11134..11718
                     /locus_tag="PXG19_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL6066699.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            11785..>12331
                     /locus_tag="PXG19_001405"
     CDS             11785..>12331
                     /locus_tag="PXG19_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL6066700.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
BASE COUNT         3985 a         2574 c         2373 g         3399 t
ORIGIN      
        1 atgaaaataa ctgccaaaca atattatcgg gctggaatta tgccctattt tttcgatgag
       61 cgtggtgtaa aaaaaacagc atctgaaaaa ataaaacatt cgttattcaa agcctttaac
      121 ggcaatactc aagcaagaga aacacctatc cctacggtca acatttttta ccagcaccaa
      181 ccctgttttt taccttttca tttagcggat aaaaaacatc cgttaaccgg tacttggcag
      241 ctacaactag aaaattcaaa ccaaattatt tccggcaaaa ttaaagcaag gggaattaca
      301 ttacctcaag atttgccctt aggttatcac caattacagc taaaaacggt agataaaacc
      361 tttaattgca ccattattat cgctccggaa cgctgctacc aaccacaagc cgtcattgaa
      421 caaaaaagat tgtggggaac cttcctacaa ctatacacct taaaatcagc ccacaactgg
      481 gggattggcg attttggcga tttaaaagac ttcattcaac agattgcccc ttaccaagca
      541 gattttatcg gcttgaaccc gattcactca ctttttccgg caaacccgaa ttctgccagc
      601 ccatacagtc catcctctcg ccgatggctg aatattgctt acattgatat caatcagcta
      661 gcggaatttc aacaaagtga tgaagcacaa acttggtttc attctgctga aatccaacaa
      721 caattatcag aattacgcac tcaggattgg ttgaattacg agcaaatcat tccgttgaaa
      781 ttgaaagggc tacgctttgc tttcgcaaaa tttcagcaaa atatgaccgc ttgcgctgcc
      841 cctgctttta tcgaatttgt acaaaaaggt ggtgaaagct tacaagttca agccacattt
      901 gatgcccttc atcagcatct atcggcacaa tttgccgacc aatggggctg ggatttctgg
      961 gagaaagcct accaagacta ccactccgca gccgtgcagc aatttagaga aacgcataaa
     1021 accgacatag aattttacct ttggttacaa ttcgttgccg atcaacagct agcagaatgt
     1081 gatgctatct gccgtcagca aaatatgcgt attggtatgt atcgcgatct cgccgttggc
     1141 gtcagcccga atggtgcaga aacgtggaat gacaaacaac tttattgctt aaatgcctct
     1201 gtcggcgctc cgcctgatgt attaggtccg caaggacaaa actggggctt aaccccaatg
     1261 aatccgcatg tattaaagca acaagcctac cgtccgttta ttgagttagt cagagctaat
     1321 atgagtcatt gcggtgcatt acgccttgac catattatgt ctttactccg tttatggtgg
     1381 atccccaaag gcgatagtgc ggttaatggt gcttatattc gttatccagt tgatgattta
     1441 atcgcaattt tggcacttga aagccaacgc caccaatgcc taattatcgg tgaagattta
     1501 ggtactgtgc caaaagaaat tgtgagcaag ctcaaaaatg cggggatttt atcttacaaa
     1561 attttctatt ttgaatttga tgaacaaggg aagagtcgag acttacagca ttacccttac
     1621 caagcaatga ccacattaag cacccacgat ttaccgacta tcaatggtta ttggcgtggc
     1681 tatgattttg aattaggcga aaaattcggc gtctatccta attcgaatat tttggcaatc
     1741 cttaagcaag atcgagtcaa tgccaaagcc aaaatcttac aacgcttaca agaacataac
     1801 gtagagatcg cacctgaaat tagcgagcaa cttaattctc cggtgaatac cgcatttatt
     1861 cactgtttac aaacctatgt tgcaaatgta agcagcggat tattcggctt ccaacccgaa
     1921 gactggttgg gtatgactga gccggttaac attccgggaa ccagtacaca atatgcaaac
     1981 tggcgacgtc ggcttagtgt taacctcgag gagatcttca cagataaaga tattcaagcc
     2041 ttattaaaag aagttaattt aatccgtaaa aatcaataaa agttagataa gaaaaaaggc
     2101 gactttccgt cgccttttgg gcttatatgc ttgatgtcta tctttatcca cctgaaaccc
     2161 acaacataat cgctagcact tgaggtagca taatacgcaa aaacattact agtgggtaaa
     2221 cagttgcata ggataacgct gcagcgccat ttccctcttt aatttcattg gcaaaagcaa
     2281 gcgctggagg atcagtcatt gagccggcaa gtaatccaca aatcgttaaa tagtttactt
     2341 tgttatacat tctggcaatc aatcctgcta tcatcaatgg aacaaaagta ataatcgccc
     2401 catagcatat ccactcaacg ccctcactgc ttaatagcgt ttcgagaaat ctaccgccag
     2461 attttaaacc aactaccgct aaaaacagta caataccgat ttcacgcaat gcaagattgg
     2521 cacttggtgg cataaaccag tagagtttac tgaaactacc aattcttgca agaataagag
     2581 caaccaccag tggtccacca gccaagccca gctttaacgc aacagggaaa cccggtaaat
     2641 aaatcggtac agaaccaagt aatactccca aaccgatccc gataaatatt ggcaacattt
     2701 ggacttgttg caactttgag tgcgcattgc cgataatcgt cattaccatt tcaatatcag
     2761 cttgccgccc tactaaattg agaacatcac caaattgtaa cgtcatatca cctgttggta
     2821 ctaattctac accggctcga tttaaacgag aaatgacaac atcgtatttg cctttaagca
     2881 ttagctgacg aatttgtttc ccgaagactt tttcattcgt cactacagca cgttcagaac
     2941 ggtaaatcgt gcctttggtt gagacagata catctactgc ctcacctaaa ataatctgca
     3001 tttttcgtaa tgaggattct tcacctacta agtgtaaaat atctcctatc tgtagaatcg
     3061 tatctacacg tggaatagaa agctcattcc cccgttttaa gcgtgaataa gctacttcgt
     3121 gcaaattaaa atcaggaatt tgtttcaacg ttaaaccgtg aatatttgga ttagtcagac
     3181 ggacatttaa ggtactaagt tgatctttac ttctattttg ctgtttgtta aaagcctctg
     3241 cttccgcctc aatattgatt cgaaataaaa tccgaatcag ccacattgaa agtagaattc
     3301 cgataatgcc gaacgggtaa gcaatcgcat aactcattcc cataatttca gttacactct
     3361 cagcgcttaa ctcagccaat acctgttgac ctgctcctaa agaaggggta ttggttacag
     3421 ccccggagaa aatgcctaaa atcacaggca aaggaacatt gaagaattta tgaataagaa
     3481 taactaaaat accgctaatc agtacaatca gtaccgcaaa accattgagt tttaagccag
     3541 aatgttttag tgaggcaaag aatccaggtc ctacttgaat tccaattgaa taaacaaata
     3601 aaatcagccc gaactcttga ataaaatgaa gcgtatgggc atcgagcttc acatcgaatt
     3661 gcgccataaa atgggagaca aacagcccac caaataacac tccccctata cctagcccca
     3721 cgcctctgat tttaatatgg ccaatccata agcctagaac ggccactaaa gataataaac
     3781 tgacagtaag tgcaatttcg ctcattacag cctctcttta atatgaaata cctcaaaaat
     3841 ggtatccaat tctaccaaat ctcaaaaacg aaaaatgaga tctatgtcaa aaaaataaaa
     3901 tattgatagt attactccaa gatgaacttc aaaaaagttc ctgaatttaa aaaaaattct
     3961 cgacaatact tttttttaca gtaaattaaa caattattta aataacctaa ggatcaaaca
     4021 caatgttatc aaacgaagtc tttatttcga ttatcgtgct gttaatccta agcttgctta
     4081 gaattaatgt agtaatcgca cttattattt ctgcccttac ttgcggtcta atcggtaatc
     4141 ttggtgtaga aggggctgga tttaccgaag cattggaaaa aacaataaaa agttttactg
     4201 gtggtttagg tgggggtgcg gaaactgcta tgaactatgc cgttcttggt gcgtttgccg
     4261 tagctctatc aaaatcaggc gtgaccgatt tattagccta taaagtgatc aaatcctttg
     4321 gtcacagccc gtcaggtcgc tccgttactt ggtttaaata cattgtatta tttgtgttag
     4381 tggcatttgc aatgtcatct caaaacctaa ttccaattca tattgccttt attccgattt
     4441 taattccacc gctattaagc gtaatgaata aattgcaaat tgaccgccgt gcggtagctt
     4501 gtgctttaac ctttggttta accgccactt atatgttaat tccggcaggt ttcggtcaga
     4561 tctttattga aagcatctta gttaaaaata tcaaccaagc aggtgaaccg ttccaattag
     4621 tgactaccac agcggaaatg accaaagcga tgttaattcc tgtttccggt atgattttag
     4681 gcttactgtt tgcattcttt gtgtcatacc gtaaaccgcg tgtgtatatt gaaaatatgc
     4741 ctgaaccaac cgcagatgat attgaagccc gtgttgcaaa cgttaagccc ttccatatcg
     4801 gcattagtat tgtggcgatt atcgcgacct gttcggtgca attagcaaca aattcgacta
     4861 ttatcggcgg cttagtcggt ctggttattt tcgccttagg cggtgtattt agactgaaag
     4921 agagtaacga tgtcttccaa gctggcttac gtttaatggc gatgattggc tttgtgatga
     4981 ttgccgcctc cggttttgcc ggcgtggtca attcaacagg cggtgtgccg gcattggtag
     5041 aaagcctgcg tgatgtgatt tcatcaaaag aaatggcagc attgctaatg ttagtcgttg
     5101 gcttatttat tacgatgggt atcggctctt cattctcgac tgtgccgatc attacctcaa
     5161 tttatgtgcc gctttgtatc tcatttggct tctcgccact ggcgacaatg gcgattgtcg
     5221 gtgttgctgc tgcactcggt gatgcaggtt ctccggcatc agattccaca cttggtccaa
     5281 cctccggctt gaatgctgac ggtaaacacg accacatttg ggattctgtt gtaccaactt
     5341 ttatccactt taacattcca ttattagtgt tcggctggat tgcagcaatg acactttaag
     5401 ctataatatg caaaattttt gctaaaaatg accgcttgta gccattacaa gcggtctatt
     5461 ttcttcttta ttttgcaaac cacattagga tcaccaatga aatttatctc ttttaatatc
     5521 aacggattac gagccagacc acatcagctc gaagcgatta tcgaaaaaca ccagcccgat
     5581 gtactcggct tacaagaaat caaagttgcc gatgaagatt ttccttacga tttagtcaat
     5641 cacttaggct accacgtttt ccaccacggg cagaaaggtc attacggcgt ggcattactg
     5701 actaaaaaag agcctatagc ggtgcgtaaa ggcttcccga cagatgtact tgatgctcaa
     5761 aaacgaatga ttatggcgga tatcgagacc gatttcggcg tgctaaccgt attaaacggc
     5821 tatttcccac agggggaaaa tcgcagccac gaaaccaaat tcccggcaaa acaaaaattc
     5881 tatgctgatt tgcagaacta cttggaaagc gaattaaagc cggaaaatcc gattattatt
     5941 atgggcgata tgaacatcag cccgactgat ttggatatcg gcatcggcga gccaaaccgc
     6001 aaacgctggc tgcgtgacgg taaatgttca ttcttacccg aagagcgtga atggctagat
     6061 cgcttataca gctacggctt ggttgatact ttccgtgcag gcaacccaga cgtgaacgat
     6121 aagttctctt ggtttgacta ccgttcaaaa ggttttgatg ataatcgtgg cttgcgtatt
     6181 gatttaattc ttgcttcaaa atcacttgct gagcgttgcg tggaaacagg cattgattta
     6241 gacattcgag caatggaaaa accgtctgac cactcccctg tttgggcaac ctttaaataa
     6301 agttgcaaaa aaatctgagt tttcaaccgc ttgtcagttt ttagccctac aagcggttat
     6361 tttttctcac ttttttgcac tttttacgct gtactatatc cctattcaaa tctgtgctac
     6421 aatcaaacac tatttttaga ttatttttgg attatgaaca aacgtttaac cgttatttta
     6481 ctgattattg ttgccgtact tggtggctgg tattacagct tacaagagaa agagaatacg
     6541 gggcttgatc agcttattaa aaaggaagga cagcctgaat atgtggggaa taaaatgtcc
     6601 accacggtct atgatctaaa aggaaaccca caatatttcg ctcaagctac tgaaattaaa
     6661 cgctatgagt ctactgagcg tactgagttt tttaaacctt ttattgagct ttttgccaaa
     6721 gagtcgacgc aaaaacagtg gaaagtcagt gccgattatg cagaaattac caaagaaaaa
     6781 atgttaaatt taaaaggtaa tatcaaactt gttgcattag atcctgcatc acgtttgcaa
     6841 caaatcacta ccgatacgtt aactgttgat ttaaatacac aggatatttt taccgaaagt
     6901 acggtcaaat cgataggttc cggttttact acaacggggg ttggattaaa aggtaactta
     6961 aaacaacaag ttgcgacttt gcaaaaagat gtaaaatctt acattgaacc gaccattatt
     7021 caagaaacta aagaataatt tgcttggaac aaggaataac aatgaaatta atgtttaaat
     7081 ctattttagt gagcgtgtta ctgggtagca gcttttccgc ttatgctcta aaaggcgata
     7141 ccgatcagcc gattaatatt gattcaggta gccaatcgtt agatatgact aacaatatcg
     7201 tgacctttag cgataatgtc gttatcactc aagggtcgat taaagtgacc gcagcaaacg
     7261 tcaaaattac ccgtcaagaa ggtaaaaaag aaactattga cgctacaggc tcacctgtaa
     7321 cattccaaca aaccttagat aacggtaaac cggtaaacgg taaaggcaac agcgttcatt
     7381 atgatttaaa ctctgaattt ttaacgctga ttggcaatgc ggaactcaaa caacaaggta
     7441 gctttattaa agccaataaa attacctatg atgtgaaaaa acaacaactt aaagctacca
     7501 gtggcggtaa aacccgagtg aaaaccgtgc taattccaaa tgaacttcaa gataacaaga
     7561 aaaaataagg ttaaatgata tgtctgtgct ttatgccgaa catttagcaa aaagctataa
     7621 acaacgccaa gtggtaaaag acgtcagcct gaatgtcaaa tcaggtgaaa tcgtgggctt
     7681 gctcggtccg aacggcgcag gtaaaaccac cactttctat atggttgtgg gtttggttcg
     7741 ccacgaccac ggcacaattc gtattgacga ccaagatatc agcacactac caatgcacga
     7801 cagagcaaaa caagggattg gctatctacc gcaagaagca tctattttcc gccgtttaag
     7861 tgtgtacgat aacttaatgt cggtattaca agtgcgtaaa aatatcaatg ataaacagcg
     7921 taaagagcgt gccgaagagc tgattacaga attccatatt gagcatattc gcaatagttt
     7981 aggtcaatca ctttcaggtg gtgaacgccg ccgtgtggaa attgcccgag cattagcagc
     8041 gaacccgaaa tttattctgt tagatgaacc ttttgctggg gttgacccaa tctcggtaat
     8101 tgatattaaa aaaattatcg tcaatttaaa agagcgtggt ttaggggtat tgattaccga
     8161 ccataacgta cgtgaaactc tagatgtatg tgaaagagcc tacattgtcg gtagcggcga
     8221 aatgattgcc agcggcacac cacagcaagt gcttgaaaac cctgatgtaa aacgtgttta
     8281 tttaggcgat caattcaaac tctaaaaaat cccctctttg gggatttcat ctttagatga
     8341 aaaattatga caaaactaac cgaatttcta agccctgaaa atgttcgcca aggtgtactg
     8401 atttcaagta aaaaacgagc gttagaactc gtgggtaaaa tcgtggctga atcaatcaac
     8461 caaaccgaac agcaatctga agcactctgc cctattgaat gctttggcaa tttatttaaa
     8521 cgtgaaaagt taggcacaac cggcttaaat caaggcattg cacttcctca tgcaaaattg
     8581 cccgcttgcg gtgatattga gctgactaaa ccgattgcgg tctttttaca actggaagaa
     8641 gcgattgact acgaagccca agacaacaaa gaagtggatt taatttatgc aatgatgttt
     8701 ccggaaaata gctgcgaaca gtataaaagt tgcctacctg caattgcaca gaaacttacc
     8761 gataaatcgt tattaaaaca gctccgagca gctgaatccg cagaagatat ttggcaaatt
     8821 ttggtgtatg ctgataatca cctaaaagat gaagaataat actgaggaaa tatggaatta
     8881 atcattataa gcggacgctc aggctctggt aaatcggtag cattaagagc attagaagat
     8941 gcaggttatt actgcgtgga taatatccct ttacctttaa ttccaacctt aacctactac
     9001 cttactcaag aaaatcgttc ggcagtcatc agcttagata ttcgtaattt accgaatacg
     9061 cctaatgcga ttgaagaatt gcttacccag cttgagcctt taaatgctaa gctgattttt
     9121 ttagattgcg aacgcaatac cttaatccgc cgttatagcg attcccgccg aatccacccg
     9181 ctttccaccc aagacgatct ctcgttagaa ggtgcattgg atttggaaca aaaattgctt
     9241 gagcctttgg tgcaaaatgc aaattatatt attgacacca gtcatctttc ttcgcacgaa
     9301 ttagcggaaa atcttcgcca aatactgcaa ggctcaaccg aaaaagagct taaaattatt
     9361 ttccaatcat tcggttttaa atacggctta cctgccgatt ccgattacgt ttttgatgtt
     9421 cgctttttac cgaacccaca ttggaatccg gagcttcgcc caatgacagg cttagagcaa
     9481 ccggtgattg atttcttaga acgccaaacc gaagtgcata attttattta ccaaacccgc
     9541 aattatttag aaatgtggct gccgatgttg gaacaaaata accgtagcta cctaactatt
     9601 gcgattggtt gcactggtgg aaaacatcgt tccatattta ttgccgagca actggcaaaa
     9661 tatttccaag caaaaggcaa aaatgtgcaa gttcggcata aaagtttgga aaaacaccat
     9721 aaaaaaacat cttaaataag taggggctgg tcctgtgcca gccctcattt caactatttt
     9781 agggcgggca cagggcaccg cccctacatt tgattttatg aaatccgcag atattgttat
     9841 tgttggcggc ggtatggttg ggctggctct tgccggactg ctcaaagatg tcgattgcca
     9901 aattaaaatt attgagaaaa acacgcccaa atttgatgcc gatacgattt accaccgtgt
     9961 aagtgcgatt aatgcttcaa gccaaaaaat actggaacag attggtgctt ttcaacacat
    10021 tccggctcaa cgcctttctc cttacaccga aatgaaagtg tgggaaaaag acagctttgc
    10081 taatatccat tttgataata atgataatga aatcaagcaa ttaggacttt cacaacttgg
    10141 ctttattttg gaaaatgcgg tgattcaaca cgcattgtgg caacaggttt ctcaacaagc
    10201 taatgtagaa tatattatcg ccgcccccca aactctgggc gtgagcgaaa acggggcatt
    10261 tttaacctta gataacggcg aaatgctgtc tgctaaattg gttgtcgggg cagacggtgc
    10321 aaattcgtgg gtgcgtaacc agatgaaaat gccgcttacc agtaaagatt atcaacatac
    10381 cgccttagtc tgtaatgtca aaacaaccga aaagcacggc aaaaccgctc gtcaaatctt
    10441 tgctgaagat agcatttttg cttttctgcc aatggcagat gagcatctct gctcgattgt
    10501 ttggtcgctg ccaccaaaca aagccaatga attaaaaaat gcaagcgaag ccgaatttaa
    10561 taaagcctta acgattgcct tcgataatca gcttggctta tgtgaagtgc aaagtttgcg
    10621 tgaaatttac ccgcttgcag cacgcttctg ccgtgacttt gcccaacctc gtattgcgtt
    10681 gattggtgat gccgctcata ccattcaccc attggcggga cttggtgtca atttaggctt
    10741 tgccgatgcc agaacgctgg caaacgaaat ccaaaaacag ttggtaaaca accaagatat
    10801 tggtgaatac cgccatttac gccaatttga acgtgagcgt aaagcccaag cgatgaaatt
    10861 attagccaca atggaaggat taaaacagct atttgacggc aatcacccgc ttaaaaaatt
    10921 attcagagga attggtttaa gcctaaccaa ccagctgcct tttgtgaaaa agcagcttat
    10981 tcagcaagct atttacttat aaaatgtaaa ttttttcgaa ataacgtaaa gatgaacgat
    11041 tttatgaact aatacggaga ttacttgtct atttattggt acaataacca gcctttattg
    11101 gcttttattt ttatattctt gaggaatttt ttaatgaaca aattaacaaa aatcagtgca
    11161 accgctttag tcgcattatt cttagcagct tgtgataaac cagcagaaaa agcaccggca
    11221 acagaaccta caaaaacaac tgaagctgca ccaactacaa cagctcctgc tgcagaagca
    11281 gccaaacctg ctgaaacagc tgtagccgct ccaagcgaag ctgcaaaagc agattaccaa
    11341 aaattagttg attggaatac ggcacaagaa agcacaatgg caacagcaca agcagaacta
    11401 caaaagaaat tagctacaca agatcctaaa caaattcaag aaggattaag tgcatttaat
    11461 aaaaaagtag aagaaactgt aaaaagctta gatgcgattg aagtatctga tgcacaaatc
    11521 aaaacattta aagaaaaaac aaaatcagtt ttaacacttt caagtgaagt gatttctgaa
    11581 caagtaaaaa cgatctctac accaaatgac caagcagcat tacaagccgt acaacaaaaa
    11641 gctcagtctt taattgaagc tggtaatgag ttacaaaaat taaacgtaga attacagcaa
    11701 agattctcag ctaaataatt taccattcaa tgaaaagcta gagtattttg ctctagcttt
    11761 tttttgcaat tactaaggat tactatgaac acgctcgcta aaattagcct atctgtatta
    11821 tttacccttt ttttaaccgc ttgcgaacaa cctaattcta ccaaaacaca gagctcagca
    11881 gaatcgccag ttcaagtgaa agaagagtca aaagaagaag ttaaacctgc tgataccggc
    11941 gctcaagatt ataaaatgtt acgggaatgg caagacactc aagaaaaagc cttaaatgat
    12001 gcaattaaag cggcaacaga aacacttact gacaaacaaa aagccgattc taccttaatg
    12061 caagagacag ttaataacgc attattagct caaattgatc atattaagat aagtgctgaa
    12121 accctgaata ttcaaaataa tgaagtcaaa gcactaaaag acaaaacctt agaagtcctg
    12181 actttagggg ctcagatgat cgtagaaggt gctaaaatgg agaaaaatcc tacaccggaa
    12241 gcacataaag catttggcga gttacaaaca aaattgaatc aattagctga agaagggcaa
    12301 cagttagaaa atatattaag agctaaatat g
//
LOCUS       DANMGB010000069        12016 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.069, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000069 DANMGB010000000
VERSION     DANMGB010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12016
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.069"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            295..1659
                     /locus_tag="PXG19_001406"
     CDS             295..1659
                     /locus_tag="PXG19_001406"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL6066701.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            1749..3284
                     /gene="ddc"
                     /locus_tag="PXG19_001407"
     CDS             1749..3284
                     /gene="ddc"
                     /locus_tag="PXG19_001407"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL6066702.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            3387..3749
                     /locus_tag="PXG19_001408"
     CDS             3387..3749
                     /locus_tag="PXG19_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL6066703.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQAL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(3839..4426)
                     /locus_tag="PXG19_001409"
     CDS             complement(3839..4426)
                     /locus_tag="PXG19_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6066704.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            4602..5150
                     /gene="napF"
                     /locus_tag="PXG19_001410"
     CDS             4602..5150
                     /gene="napF"
                     /locus_tag="PXG19_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL6066705.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            5143..5409
                     /locus_tag="PXG19_001411"
     CDS             5143..5409
                     /locus_tag="PXG19_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL6066706.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            5448..7946
                     /gene="napA"
                     /locus_tag="PXG19_001412"
     CDS             5448..7946
                     /gene="napA"
                     /locus_tag="PXG19_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL6066707.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            8035..8940
                     /gene="napG"
                     /locus_tag="PXG19_001413"
     CDS             8035..8940
                     /gene="napG"
                     /locus_tag="PXG19_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL6066708.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            8940..9818
                     /gene="napH"
                     /locus_tag="PXG19_001414"
     CDS             8940..9818
                     /gene="napH"
                     /locus_tag="PXG19_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL6066709.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            9864..10292
                     /locus_tag="PXG19_001415"
     CDS             9864..10292
                     /locus_tag="PXG19_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL6066710.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            10303..10911
                     /locus_tag="PXG19_001416"
     CDS             10303..10911
                     /locus_tag="PXG19_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6066711.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(10973..11815)
                     /gene="cpdA"
                     /locus_tag="PXG19_001417"
     CDS             complement(10973..11815)
                     /gene="cpdA"
                     /locus_tag="PXG19_001417"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL6066712.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         3512 a         2380 c         2782 g         3342 t
ORIGIN      
        1 tagggtatga aagtgaaagg catttattgc tagataaaag cttccctttt caataaaaaa
       61 gagtatcata cgctctctta aacgtaaccc tacatttaag tctgtttcca acctatccca
      121 atttctttat tccttagggg catatagggt aaaaacaaaa aagctgaaac gcttttttta
      181 ataagtagcg agtcaaatgc cccatggcat ctattctttt aggaatagaa agcttaggct
      241 ttccgcaagg cacccgactt atttttttca cctcttgtag aaggtttatt ttcaatgaca
      301 attaaaactc ctattcaagc cgttcttgct tcaaaccaat attttttaga tcgccaagat
      361 gcaatggaat caaacgtgcg tagctaccca cgtaaattac cttttgctta ccaaaaagca
      421 caaggcgttt gggtaactga tgttgaaggc aatgaatacc tcgatttcct agcaggtgca
      481 ggaacgcttg cattaggtca taaccaccct aaattaatcc aagcagttaa agatgtatta
      541 gacagtggtt tacctttaca ctcgttagat attacgactc cgttaaaaga tgcttttacg
      601 gaagaattac tctctttctt tccaaaagat aaatatatcc tccaatttac tggcccgtct
      661 ggtgcagatg ctaacgaagc ggcaattaaa ttagccaaaa cctacactgg tcgtggcaac
      721 gtaattgctt tctccggtgg tttccacgga atgacccatg gtgcgttatc gctcaccggt
      781 aatttaagtg cgaaaaatgc agtacaaggc ttaatgccgg gcgtacagtt tatgccttat
      841 ccgcacgaat accgctgtcc gtttggcatt ggtggcgaag ccggtgcaaa agcagttgaa
      901 cattattttg agaactttat tgaagatgtt gaaagtggtg tggtaaaacc ggcagcggtg
      961 atccttgaag ccattcaagg tgaaggcggt gtggttccgg ctccaatcag cttcttacaa
     1021 aaagtgcgtg aagtcactca aaaacacggc atcttaatga ttgtggacga agttcaagct
     1081 ggtttctgcc gttcagggaa aatgtttgcc tttgaacacg caggcattga gccggatatc
     1141 gtagtaatgt caaaagcgat tggtggtagc ttaccgcttg cggtattagc gatcaaaaaa
     1201 gagtttgacg cttggcaacc ggcaggtcat accggtacat tccgtggtaa ccaattagca
     1261 atggcaaccg gctatgtatc gcttaaaatt atgcgtgaag agaatttagc gaaaaacgca
     1321 caagagcgtg gcgaatactt aactaacgca ttacgtgaat taagcaaaga attaccttgt
     1381 attggcaatg tgcgtggtaa aggcttaatg atgggaattg atattgttga tgaacgtcag
     1441 ccaaaagatg caacaggtgc atacccgcgt gattgcgatt tagccgttgc aattcaaaaa
     1501 tactgcttta aaaacaaatt gttattagag cgtggcggac gtggcggtaa tgtggtgcgt
     1561 gttctttgtg ccgtgaatat tacccaagca gaatgtgaag agtttattaa acgctttaaa
     1621 caatctgttg ctgaagcagt gaaagcggtg cgtggttaat agttagaatg gtaggagcga
     1681 aacatttttc gccctaatgt aaaaaggggc gaatatttat tcgcccctac accaatagga
     1741 tagaaataat gtcaaaccta gaaaaacaca gacaatccct gttttgtagc gatccaaaat
     1801 cgattgcgga ttatgaatcg gcaatgaata acgctgtgaa agcggtttca gactggctga
     1861 aagaagaaaa aatgtacacc ggtggctcaa ttaaagagtt gcgtgccaaa atcaacggtt
     1921 ttaacccaac ccaagctggt gtgggcgtgc aaaaatcact ggagcatttg gtggaaattt
     1981 tcttaaagcc aagcctcaaa gttcaccacc ctcattcttt ggcccactta cattgcccga
     2041 caatggtaac cagccaaatt gcagaagtgt taattaatgc caccaaccaa tcaatggact
     2101 cttgggatca aagcccggca ggttcgatta tggaagagca tttaattgac tggctacgtc
     2161 aaaaagtcgg ctatggcaaa ggaacttcag gagtctttac ctcaggtggt acgcaatcaa
     2221 acctgatggg cgtattattg gctcgtgact gggcgatagc gaaccattgg aaaaaggcag
     2281 acggttcaga gtggtcggtg caagccgacg gtattcctgc cgatgcaatg caaaaagtga
     2341 aagtggtttg ttccgaaaac gctcacttct cggtgcagaa aaatatggca atgatgggaa
     2401 tgggtttcca atcggtagtg actgtaccgt caaatgccaa tgcacaaatg gacgttgaag
     2461 ctcttgcgaa aacgttggcg gatttaaaag ccgaaggcaa aattgtggct tgtatcgtcg
     2521 caaccgcagg gacgaccgat gccggtgcga ttgatgattt aaaagcgatc cgtaaattag
     2581 ccgatgaaca tcaggcttgg gttcacgttg atgctgcttg gggtggtgca ttattactgt
     2641 cgaaagattt ccgccacttc ttagacggca ttgaattaac cgattccatt acccttgatt
     2701 tccacaagca tttcttccaa tcaatttcgt gtggggcatt cttgctaaaa gatgaagcga
     2761 attaccgctt tattgattac aaggcagact acctgaattc agaatatgac gaagaacacg
     2821 gcgtgccgaa tttagtgtca aaatcattgc aaactacccg ccgttttgat gcgttaaaat
     2881 tatggtttac cgttgaagcc ttgggtgagg agctatacgc ttcaatgatc gaccacgggg
     2941 tttatctttc taaagaagtg gaagcctaca ttaatgccac cgatggcttg gaaatgttag
     3001 tgccggcaca atttgcctca gtcttattcc gtgtcgtacc acaaggttac ccggcagaat
     3061 ttgtggatac cttaaaccaa aatgtggcag atgagttatt tgctcgtggc gaagctaaca
     3121 ttggtgtgac caaagtcggt gagcatcaat cactgaaaat gactacttta agcccgattg
     3181 caacgcttga aaacgtaaga gcattattag ctcaggtgtt ggcagaagca gatcggatta
     3241 aagattcgat tgtaaatgga acttatgttc cgccaattga ttaaactgcg ttaaaaataa
     3301 aaaggtgttt tcgacattta tttgtgtttt aatgtttgca ttcggtagtc tttatcgaat
     3361 gcaaattttt ttaacaagga gtttttatga aaaaagtcct gggtttaaca ttgatggcaa
     3421 tggcgttatc ggcgtgtaat tcaactgctt ccaacggttc ttcacaagca aatacaggtg
     3481 ttgcaccggc gaatgtgatt agcgtgaaac aggcgttagc ggcagcagat gacagctacg
     3541 tgacggtaga aggcacactc ttaaacaaag tcggtgacga aacttactta tttaaagatg
     3601 cgacagggca aatccgtgtt gagattgacg atgaagtatg ggcaggtcag cacgttggta
     3661 gcgaaggcaa taaagtccgt ttatacggag agattgacaa aggtttcaat aaaaccgagt
     3721 tagatgttaa aacactcact gttctgtaga agatcaaacc ttaatttggt tccccgcctt
     3781 gtttggcggg gtttttacgt taattaatca aaccatcctt ttgcaaaaaa acgcaaaatt
     3841 ataccgcttg ttccttcaat attgtgctac aagatgctgt gatttgctgc aaaatagcgg
     3901 tgtaatcagt ctcttttaaa ccaatattac cgaaatagtg catttttaca tcacgaatcc
     3961 cacagaactc aaacagccct tttcccagcg tatgttcaaa tgctgctaaa aagccttttc
     4021 gttcatattt ttcattggaa ttaccgagcg ttacaaattg ttgcattttt ttgccggtca
     4081 gcaagccgat actttcaatt tccccgttac gataggcaaa atcataactt aacaccctgt
     4141 ctaaatagcc ttttaaaatt gccggaaagc ccatccacca aagcgggtaa attaacgtaa
     4201 tcacatcagc ttcaagccaa tattgatgct caattgccac atctgcttca tagtgtttac
     4261 tgagtgtgcc ttgaaattcc gcccagtcta atatcggctt gaagttgagt tggtagagat
     4321 ctcgtacaac caccttattt ggaacggaag ctgctatcgt tttttccaaa atcgcatggt
     4381 taaagctgga gggattcggg tgtgcgtaaa taatcaggtg attcatagcg ttttccttta
     4441 ctgtgtcgag gcagctacta gaagatttta gcgaaacttt ctttgatgaa aatcaatatt
     4501 ttggcgaata taccggcaaa taccccgttt gaggaatgaa cggttttaag tgaacattag
     4561 ataatttagc ctattatagt gatgagtaaa aaggtgtttt cttgactgat tatcctaatc
     4621 aatcacttcc tcgccgtagc tttttgcgag ggcaattttt agactcgtta aaaagccaaa
     4681 aagtcagtca gcaagggtat gagccgattc gtccgccttg ggctaattta gcaaattttt
     4741 tagaaaaatg caccgcttgc ggtaactgca ttcaggcttg cgaaacccag attattgtaa
     4801 aaggtgctgc gggctaccct gaaattgatt ttagccgtgg tgaatgcact ttttgtgaaa
     4861 aatgtgtgca ttcttgcgag gcagaggtat tccgagcagt ttcagaacag ccttggagcc
     4921 ataaaattga gattcaagcc ggctgtttat taaagctcgg aacggaatgc cgaagctgtg
     4981 gcgatagctg tgagatgaga gtgattcgtt tccgcccgag tttaggtggc attgccgaaa
     5041 tggtattaaa tttggaaagc tgtaatggct gtggggcttg tttgagcgtt tgtccgacaa
     5101 gtgcgataaa aattcagcca ttacaaacac aggcaaacag agatgagtga aaaattatcc
     5161 gaacaggaaa actggtatgt gtgcagtctc gtggtgcaag caaaaccgga aaaattggaa
     5221 gaagtaaaag ccgagattct gaagattcct cataccgaaa ttcacggtga gaaaacagat
     5281 gaaggcaaat tggtcgtgac gattgaaagc aatgtgcatt tagccctttc cgatcgaatc
     5341 gatcaagtaa gagatattaa aggcgtgatt gtggtgtctt taatttctaa ttacattgat
     5401 gaacagtgat taatgattat ttttgaagcc aaacgtggga catagttatg gaactcaatc
     5461 gtagagattt tatgaaagcg aacgccgctg tggcagctgc tgcagccgca ggaattatga
     5521 ttcctgtgaa aaacgttcag gcagatgaca ccggtattcg ttgggataaa gccccttgtc
     5581 gttactgtgg tacaggttgt agcgtgctag tcggtactaa agacggtaaa gtagtggcaa
     5641 cccaaggtga cccggatgca gaagtaaacc gtggtttaaa ctgtattaaa ggttatttct
     5701 tatccaaaat gatgtacggt gcagaccgta tgcaagagcc aatgttgcgt atgaaagacg
     5761 gtaagttcga caagaacggc gatttcacgc cggtttcttg ggatcaagcc tttagcatta
     5821 tggcggagaa gattaaaacc actattaaaa atgacggccc gaatgctgta ggtatgttct
     5881 catcaggtca aacaaccatt tttgaaggtt atgcgaaagt gaaactttgg aaaggtggtt
     5941 tccgttcaaa tacgattgac ccgaatgccc gccactgtat ggcgtccgct gcggttgcct
     6001 ttatgcgtac ctttggtatg gacgagccga tgggctgcta taacgacatc gaaaaaaccg
     6061 atgcgttcgt gctttggggt tcaaatatgg cagaaatgca cccgatttta tggtctcgta
     6121 tttctgatcg ccgtttatca gacaataaag tgaaagtggt ggtaatgtcc acttacgaac
     6181 accgttcgtt tgaattagcc gatacaccga ttatcttcaa accacactca gatttagcaa
     6241 ttttaaacta cattgcgaac tacattatcc aaaacgataa agtaaattgg gattttgtta
     6301 acaaacacac caaatttaaa cggggtgaaa ccaatatcgg ttacggttta cgtcctgaac
     6361 acaaattaca acaaaatacc aatgcgaaaa ctgccggtaa aatgtatgac agcgattttg
     6421 aagagtttaa gaaaatcgtt gccccttata cattagaaga agctcaccgt atttcaggcg
     6481 tgccgaaaga tcagcttgaa acattagcga aattatatgc agatcctaac caaaaattag
     6541 tgtcgttctg gacgatgggc tttaaccaac atacccgtgg tgtgtgggta aaccatatga
     6601 tgtacaacgt ccatttatta accggtaaga tcgcattaga aggttgtggg ccgttctcac
     6661 tcacgggtca gccgtccgct tgtggtactg cccgtgaagt gggtacattt attcaccgct
     6721 taccggcaga tatggtggtc acaaatccga aacaccgtga gattgtagag aattcttgga
     6781 aattaccggc tggagcaatt cctgatgtac cgggctttca cgctacagct caaagccgtg
     6841 ccttaaaaga cggcaaaatg aaattcttat ggcagatgtg taccaacaat atgcagggcg
     6901 gcccgaatat caatgaagag atcttcccgg gctggcgtaa tcctgaaacc tttattgtgg
     6961 tttcagatcc gtacccatct gtttcagcag tggctgctga cttaattctt ccaacctgta
     7021 tgtgggtgga aaaagaaggg gcttacggta acgcagaacg ccgtacccaa ttctggcgtc
     7081 agcaagttaa agggccggca aatgcccgtt cagatacttg gcagttagta gagttctcta
     7141 aatacttcaa agtagaagaa gtatggccgg aagagttatt agctaaagca ccggaattgc
     7201 gtggtaaaac tctatacgaa atcctttacc gcaacggcaa agtagatagc taccaagtgc
     7261 caactaacat tccgggctat atgaatgacg aagcagatca cttcggttac tacattcaaa
     7321 aaggcttatt tgaagagtat gcggaatttg gccgtggtca cggtcacgat ttagccgact
     7381 ttgacaccta ccacaaagta cgtggcttac gttggccggt ggtaaaagac gagaaaaccg
     7441 gcgaatacaa agaaacttta tggcgttacc gtgaaggcta tgacccatac gttaaagccg
     7501 gtgaagaagt ggcattctat ggcaatgcgg acaaaaaagc agtgatttta ggtgtgccat
     7561 acgaaccacc tgcggaagca ccggacgaag aatatgactt atggttctgt accggtcgtg
     7621 tactagaaca ttggcacacc ggtacgatga cccgccgtgt gccggagtta cataaagcat
     7681 tcccaaccaa cttggtttgg atgcacccga atgatgcgaa aaaacgaggc ttacgtcacg
     7741 gtgataaagt gaaagtgatt tcacgccgtg gtgaatatgt atcgaactta gatacccgtg
     7801 gacgtaataa atgtccggaa ggtttgattt actcgacttt cttcgatgcc ggtcagttaa
     7861 tcaacaaagt gacacttgat gcgactgatc caatttcatt tgaaaccgac ttcaaaaaat
     7921 gtgcggttaa agtggtgaaa gcttaattgt aggggcaaat tatttgcctc agacaagcgg
     7981 tcaaatttgc aaattttttt acaaaaacga ccgcttacct aagaggaacc cacaatgaaa
     8041 atggatccaa atcgtcgcca gtttttaaaa aatgcaaccc gtaccgcagc cggtgtttgc
     8101 ggtgtaggaa tgattttagg gctacagcaa caacaaagtt ttgcccgtca aggggtagca
     8161 ctacgcccac cgggtgcatt gccggagcaa gatttcctga gtgcttgcac ccgttgcgga
     8221 caatgtgtgc aggcttgtcc ttacgatatg ttgcatttgg catcgcttat ttcaccagtg
     8281 gaagccggca cgccatactt tattgcacgg gataaacctt gcgaaatgtg cttggatatt
     8341 ccctgtatga atgcttgccc aaccggggca ttaagcgaag agctaaaaga cattgacgat
     8401 gcacgaatgg ggcttgcggt gttgctcgac cacgaaactt gtcttaactg gcaaggcttg
     8461 cgttgtgacg tgtgttaccg tgtttgtccg ttaatcgaca aagcgattac tcttgagaaa
     8521 gtgcataacg accgtacctc gattcacgcc aaactgattc cgaccgtgca ttctgatgct
     8581 tgcaccggtt gcggtaaatg tgaacaggct tgcgtattgg aagaggcagc gatcaaagtg
     8641 ttaccgatgg atttagccaa aggcttgctc ggtcgtcact atcgtttagg ctggcaagag
     8701 aaacaaaatg ccggtaaatc gctgattgaa gatgttcacc cagagggttt acgcccagct
     8761 tatgatgcca gaatgccgga aggcttacac gagccggtgt atcagcatat ggaagtaaaa
     8821 cctgatgtga aagtggctac gccaagtcgg gcgacacaaa actatgtgcc gaactctacg
     8881 acggtggaag ctccggagca tttccctgat ttagacttga atctcaaggg ggtgaaataa
     8941 tggcagccaa ttctccaaaa aatgcgggct tagaggctcg tcagaaacta ggttggtggc
     9001 acgcttaccg ctttttgatt ttaagacgct taagccaact cagcattatt ttgatgtttt
     9061 taagcggccc actttggaat gtctggattt taaaaggaaa ctacagcggt agcttattac
     9121 tagataccgt gccgatgaca gacccattaa tgaccgctga agtgctggca accggctatc
     9181 gccctgaatg gacggtattg gttggggcgt taattatggt ggcgttttac ggcattgtcg
     9241 gcagcaagct gttttgtagt tgggtctgcc cgatgaatat ggtaacagat actgctgctt
     9301 ggttaagacg caaactcggt attcgccaaa ctgctaaaat tccacgcaat ttacgctatg
     9361 tgattttggc ggtgatttta gtcggtagtg cgatttccgg aacactattg tgggagtgga
     9421 tcaacccggt tgcggctctc ggtcgggtgt ttgtattcgg tttaggggca acgctttggc
     9481 tggttttagt ggtgttcttg tttgacttat tggtggcaga acatggctgg tgtggtcatc
     9541 tttgcccgat tggtgcaacg tatgccttaa ttggggcgaa aagcctgatt aaagtcaaag
     9601 tggtagatcg taaccgttgc gataattgta tggattgtta caacgtttgt ccggaacctc
     9661 aagtgttgcg tgtgccgcta cacggtaaac cggaggaaag cacggttatc ttatctaaag
     9721 attgcattac ctgcggacgt tgtattgacg tttgtgccga aaatgtattt gccttcggaa
     9781 tgcgttttca aggcagtatt gatgtgaaaa atatttaatt tttatctttt tgaaaacaag
     9841 aattttaatg gagtgaacct caaatgagaa aatatctcgc cttcatttta gccgtgatgt
     9901 ccggctttgc aatggcggaa gcccctaagt tatccggatc aattgatgag acaaccgaaa
     9961 gtgttgcacc gggatttcat aacccacaaa aagatgtggg cacgattcca accactttcc
    10021 ctttccaacc accgcttgtt ccacatagta ttcgtggctt acaagtgagc aaaaacgtaa
    10081 accattgttt aggttgccac gctattgaac catctaaaac cacaggtgcg acccgtttac
    10141 cgccaagcca ttttaccgac cgtgatggca aggtgtacga aaacgaatct cctcgtcgtt
    10201 atttctgttt gcaatgccac gtgcaacaaa ctgatgtaaa cccgattatt caaaataaat
    10261 ttgaatctgt acgtgaatct caagctaaat aaggagtaag taatgttgag aagattttgt
    10321 aactggttac gtagcccaag caaaatggca attggtgctg taatccttat ttctgcatta
    10381 ggtggtattt tcgcttggag tggttttaat gcagggttag caatgacaaa tactgaagag
    10441 ttttgttcag attgccatat gaacgatgtt gtgccggaat accgtgcctc tgctcactat
    10501 tcaaaccgca gcggtgtgaa agcgatttgt tcagattgcc acgtaccgca cgaattcttt
    10561 ccaaaatggc aacgtaaaat catagccgca aaagaagttt atgcacactt taccggtaaa
    10621 gtagatacca aagagaaatt tgaagctcat cgtggcgaaa tggcagaacg tgaatgggca
    10681 cgtatgaaag cgaacagctc tcaagagtgc cgtaactgtc ataattttga tgatatggac
    10741 ttcactcaac aaaaaaacat tgcgcagcaa atgcacgcat tggcacaaga gcaaggtaaa
    10801 acctgtattg actgccacaa agggattgca cacaatctcc cacatatgga agcgatccag
    10861 aaaaacttta tccctgatga tttgctgaaa aaagcagaag agaagaaata acttaacgtg
    10921 tttcaataga aaaccctcaa tttccattga gggtttcttt ttagtagcca agttagtaac
    10981 caatggcatt gacatttggt aaaaaatcgt tggaatttaa ccgcttgacg accgtttcta
    11041 tcgtgccgtt ttcgtgcaat tcaatttcac gccagccttg tggttgtaag tctaaggtaa
    11101 actggtcgca attcggctta aattgaatgc aagtagatgg ggtggcataa atcggaatac
    11161 catgccaaat atcatcaacc tgctgatgaa tatgaccatg cacaatcgct tttacattct
    11221 taaattttgc gaaaatctcg gataattcat tgctgttttt taagctatgc tgatccagcc
    11281 acgctgagtt tgtcggcaaa atattgtggt gcagagcaac caaggtaaac cgttgcggat
    11341 attgtgccaa tttttcttct aaccatttaa gctgtgagta agagagttcg ccataaggca
    11401 tacctaccac ctgggtattt agcatcagaa gctgccattg ctcaccgagt aaaatttgtt
    11461 tatggggaag gatatgttta tattgcgcca aaatttctga catactcggc tgaacatcgt
    11521 gattcccctc tagccacact atcggcgagt ttagcgaatt agttatctgt gcaaaatagt
    11581 gataaccagc aatattgtta tcttgaatca aatcacctgt ggcaagaact agatcaaaat
    11641 attgcttcgc ttgtttgttt atttgctcaa taactgccga aaaacttttt actgttttga
    11701 cattaagtag agtttcctcc ggattggaga aaaggtgagg gtcagttatt tgtaataact
    11761 taattacccc tgttacgggt aacttaatat attcgtgcat tcgttttgca tccattcaaa
    11821 ttctagtaat ttttaactgg tgagattcta tcagtaagct aaaagtaaaa atgtggacta
    11881 tgccgcattt ttgaaaaaaa gtgagattaa tcaaaaaaaa tttattattt tcgatagcta
    11941 agacaatggt aagtttgatt aatactttca tattgtaata gatgattttt atactgtttg
    12001 gctgtttcta gaacaa
//
LOCUS       DANMGB010000070        11918 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.070, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000070 DANMGB010000000
VERSION     DANMGB010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11918
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.070"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            88..585
                     /gene="purE"
                     /locus_tag="PXG19_001418"
     CDS             88..585
                     /gene="purE"
                     /locus_tag="PXG19_001418"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL6066713.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            600..1565
                     /locus_tag="PXG19_001419"
     CDS             600..1565
                     /locus_tag="PXG19_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL6066714.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            1584..2672
                     /gene="purK"
                     /locus_tag="PXG19_001420"
     CDS             1584..2672
                     /gene="purK"
                     /locus_tag="PXG19_001420"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL6066715.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(2893..3303)
                     /locus_tag="PXG19_001421"
     CDS             complement(2893..3303)
                     /locus_tag="PXG19_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066716.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(3306..5324)
                     /gene="uvrB"
                     /locus_tag="PXG19_001422"
     CDS             complement(3306..5324)
                     /gene="uvrB"
                     /locus_tag="PXG19_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL6066717.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            complement(5563..5799)
                     /locus_tag="PXG19_001423"
     CDS             complement(5563..5799)
                     /locus_tag="PXG19_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6066718.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            5962..6807
                     /locus_tag="PXG19_001424"
     CDS             5962..6807
                     /locus_tag="PXG19_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL6066719.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            6818..8014
                     /gene="efeB"
                     /locus_tag="PXG19_001425"
     CDS             6818..8014
                     /gene="efeB"
                     /locus_tag="PXG19_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL6066720.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            8025..8644
                     /locus_tag="PXG19_001426"
                     /pseudo
     CDS             8025..8644
                     /locus_tag="PXG19_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(8680..9498)
                     /locus_tag="PXG19_001427"
     CDS             complement(8680..9498)
                     /locus_tag="PXG19_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL6066721.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(9510..10109)
                     /locus_tag="PXG19_001428"
     CDS             complement(9510..10109)
                     /locus_tag="PXG19_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL6066722.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            complement(10106..11653)
                     /gene="sbcB"
                     /locus_tag="PXG19_001429"
     CDS             complement(10106..11653)
                     /gene="sbcB"
                     /locus_tag="PXG19_001429"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL6066723.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
BASE COUNT         3492 a         2603 c         2474 g         3349 t
ORIGIN      
        1 tgcttttcac ttcttaaata gctacgcaaa cgtttgcttt gtatgctatg attacactgt
       61 tttacattag tatcataagg atttaaaatg ccaaataaag ctgaaattgc gatcgtaatg
      121 ggatctaaga gtgattgggc tacaatgtct gaagcaaccc aaatattaga ccagttcggt
      181 ttgagctatc acgttgaagt cgtctcagca caccgcacac cggacaaact cttttctttt
      241 gctgaaactg cagagactaa cggctataaa gtgattattg ccggagccgg cggtgcagct
      301 cacttgcccg gaatgatcgc tgctaaaacc attgtgccgg tgttaggtgt gccggtaaaa
      361 agctcaatgt taagtggtgt agatagcctc tattcgattg tgcaaatgcc gaaaggtatt
      421 ccggtcggta cgctcgcaat cgggccggca ggtgcagcaa atgcaggctt attagccgct
      481 caaattttag cagcctttaa ccctgatatt gcagagaaac tgcgtatttt ccgtcaaacc
      541 caaactcaga tggtattaga taatcctgat cctcgtgttg aataactatt gtataaaaga
      601 tgtctaaaaa attattaatc ctccacactg gtggtactat ttcaatgaaa gaaggggaag
      661 acggtaaggt ctccccttcc aatgaaaatc ctctcttggc tgccttagaa cgtttaaacc
      721 acccagcaaa attggcgcaa gaatcgttat ttaatattcc ctctccgcat atcaatatcg
      781 agcattggca acagttaaaa atgcggattg aaaaggcagt gaatgaggag aatgtcgatg
      841 gcgtagtaat cacccacggc acagatacct tggaagaaac ctcctatttt ctggatttag
      901 ccctcagcgt aaatataccg gtagtaatta ccggagcaat gcgttccagt aacgaactgg
      961 gtgctgatgg cttaatcaat ctacaaagtg cgattttagt ggcgttaaat gaagaaagcc
     1021 gagataaagg cgtgttagtg gtgatgaatg atgaaatcca caatgctaaa tttgtgacca
     1081 aaacccacac cactaatgtg gcgactttcc aaaccccaac ctttgggcct tgtggcttag
     1141 taacgaaaga atctgtcatt tttttccaaa aattgaccac ttacgaacgt tatccaattc
     1201 aacaagtaac taaagctaac gtgcaactac tgaaagcata cgccggaatg gatagttttc
     1261 tgctggaaca attagcgaaa agcaaatgcg atggtgttgt gattgaggca ttgggtgcag
     1321 gtaatttacc ccctagttgt ctggctggta ttgaggcttt agtgaatgcc aatattccaa
     1381 ttgtaattgt ttctcgggca ttcaatggta ttacccaaga tgtctatgat tatgtaggcg
     1441 gtggaaaaca gttaaagcaa aaaggcatta tttttaccaa aggcttaagt gggcaaaaag
     1501 ctcgcattaa acttatggtc ttactcagcc aaaccttaga caaaccacta tcagactatt
     1561 tctaacccat tgagaatacc acgatgcaaa aaagtgcaat ctacccacct gtgtatgtat
     1621 taggcaacgg ccagctcggg agaatgctac gctacgccgg agcaccactt gatattgaag
     1681 tcaaaccgct ggctttcgat gcccctgtgt ttgatattga gccaaacagc attattaccg
     1741 cagaaatcga acgttgggca gatacgcctt taacgcaatt actcggtaac cacccgaatt
     1801 ttgtgaacct gaatgttttt gggaagttag ccgatcgttt tacgcaaaaa tcactacttg
     1861 atgaactcca tcttgcgact tcaaaatggc aactgctaga aaatgccgaa cattggcaag
     1921 atatttttca gcatattggc gaaaaagtag tggttaaacg ccgaaccgga ggatatgacg
     1981 gacgtgggca atggattgta acgcaagact cgattcatca aattacacct gaattatttg
     2041 gcgaagtgat tgccgaaaaa tttatcccgt ttgaggggga aatttccatt gttggggcga
     2101 gattccgtga cggctcaacc cgtttctacc ctatttctca caatttacaa caaaacggca
     2161 ttctacgtta ctccgtctcc gatgtgaatt taccgaacca agccctctac cagcagcaag
     2221 ccgaacagat gctcgctacg gtaatgcaaa aattagagta tgtcggcgta atggcaatgg
     2281 aatgctttgt tgtgggcgac aagctactca tcaacgagct tgcccctcga gtgcataaca
     2341 gcggacactg gacacaactc ggctgtgcca ttagccaatt tgagttacat ttacgggcat
     2401 tattagatct acctacgcca gcactcgacc aaattgcccc aagcgtgatg gttaatttaa
     2461 taggcattga acataacaag cagtggctaa gcctcccatt tagccaacta cattggtatg
     2521 gcaaagaagt ccgagctggt agaaaagttg ggcatatcaa cctcactcac accgataaaa
     2581 acggcttaat tgaactactg gaacaactca gaccgagcct aacggaagat ttccattcgg
     2641 gattagattg ggcaatcaat aagctcaagt aagcggtcgg attttgtaac ttttttgcaa
     2701 atctgtttac ccgatggtgc gagcttcctc gctcgtacca aacaagcggt cgacttagtg
     2761 ctaaaatttg caaaataatt caacataatg gctacttccg gtcatcatct tgatctgaaa
     2821 acccctcagg gtggatatgg ctatcaaaaa gcattttctt cctccgagaa aacagatttc
     2881 ttcacaagaa tcttagagct gctctttatt tgtttcctta ggcaataact tcgagcaaat
     2941 gataatagag agcatagccc caaatcctgc acctgaaatc ttcagtgatt tatcataaac
     3001 tgccggctca aaataaataa atcccaaaat ccaaattaaa aagaacccca tataaatcca
     3061 aaacacttta tcttcatttt tctgggtata acctttataa acaataaccg cactacttac
     3121 catcatcgga ataataaaag tcaaaaacac attattgaac agggtaccaa atcgttcaaa
     3181 cggattactg tactcccgca taatatggtg ggcaatccag ataaccacca taaaaacaag
     3241 ttgagagaaa ataacaattt tggcaaataa gattaatttt gaaaataatg aacgagaaat
     3301 catatttaaa cctccaacaa atacgccttt aaatgctgca acttatccct taccgcagcc
     3361 gctttttcaa attccagatc tttcgcaaaa tcacgcattt gttgttccag cgttttaagc
     3421 tctttttcca gttctttacg ggatttcggc ttgtagtcgg ttgcagaatt ttcggctttt
     3481 ttgaccgctt gtttgccccg ttttggcttg tcggattgtc cgatgtcgag caattcaccc
     3541 acttttttgt tcaacgcttg tggcgtgatg ccgtgttctt cgttgtattt catctgcttt
     3601 tcacggcggc gttcggtctc agtaattgct ttttgcattg agttggtaat gcggtcgccg
     3661 tataaaatcg cttttccgtt gaggtttcgg gcggcacgtc cgatggtctg aattaacgag
     3721 cgttcggaac gtaaaaatcc ctctttatcc gcatcaagaa tggcaaccag cgacacttcg
     3781 ggcatatcta agccctcacg caataagttg atccccacca gcacatcaaa cattcccatt
     3841 cgtaaatcgt ggataatttc gacccgttcc accgtgtcaa tgtcgctatg tagataacga
     3901 actcgtacgc catgttcgtc caaataatcg gtgagatctt ccgccatttt tttggtgagt
     3961 gttgtcacca gcacccgttc gtccaccgcc actcgtttgt gaatttcaga cagtaaatcg
     4021 tccacctgcg tagcaacggg gcgaacttcg ataatcggat cgagcaagcc ggttggacga
     4081 actacttgat ccaccacatc gggatttttc tccaattcat acgcccccgg tgtggcagaa
     4141 acgtaaatcg tctgtggtga aagacgttca aactcttcaa atctcaacgg gcggttatcc
     4201 agtgcagacg gcagacggaa accgtattgc accaatgttt cttttctcgc tcggtcgcct
     4261 cgatacattc cgccaatttg tggcacagta acgtggcttt catcaatcac caaaataccg
     4321 tccgccggca tataatcaaa cagggtcgga ggggcttcgc cctcttttct gcccgagaga
     4381 tagcgtgagt agttttcaat gcccgaacag tagcccagct cgttcatcat ctcaatatca
     4441 aactgcgtac gttgggcgat ccgctgctct tccagcaatt tattctcttt gatgaaatag
     4501 gtgcgacggt cggcaagctc gaccttaatt tgctcgattg cctccaaaat ccgttcccga
     4561 ggggtcacat agtgagtttt cgggtaaatg gtatagcgag gcaccttgcc caagctatgc
     4621 cctgtaagcg gatcaaacag cgacagattt tcgatttcat cgtcaaacag ctctaccctt
     4681 aacgctactt catcgctttc ggcagggtaa atatcaatca catcgccccg cactcggaaa
     4741 gtcgaacgtt ggaacgcctg atcgttgcga gtatattgca attcggcaag gcgagagaga
     4801 atttcacgct gcccaatcat cgcccccact tgcaaatgca acatcatctg catataagcg
     4861 tccacatcac ccaagccgta aatggcagaa acggacgcca ctacaatcgt atctcggcgt
     4921 tccaaaaagg atttggttgc ggaaagtcgc atttgctcga tctgctcatt gatagaggca
     4981 tctttctcga taaaggtatc gcttgccggc acataggctt cgggctggta gtaatcatag
     5041 taagagacga aatactccac cgcattttcc ggaaagaacg ctttcatctc ggcataaagc
     5101 tgggcggcaa gggttttatt cggggcaagc accatcgccg ggcgattgag cttggcaatc
     5161 acattagcaa tggtaaaggt tttccccgag ccggttacgc caagtaaggt ttgatgtgcc
     5221 aagccgtcat ttaagccttc ggtcaatttg gcaatcgcac ttggttggtc gccggagggc
     5281 ttgaaaggag aatggaggat aaagggtttg ccttgcttgc tcatagaaaa tcctgtctta
     5341 aaaaatcggt ttattttagc acaagcaagc ggtcgttttt atcgggattt ttgcaaattt
     5401 attgtaactg cttatattga tccattcttg gatctaacac cctaacaata aagatacctt
     5461 ttgggattgg tttataataa atagaatgtg agcggtggta atgacagcgt aacaaagggc
     5521 gaataaagta acgctaaatc tcgctctgcc ctaacagaaa gtttatacat tacgttttgc
     5581 cttgctgata atagattgaa cggtttcctc agaaacaccg ctttctaagc cttcatcaat
     5641 taaggctctt agctgaatta gttgctgttc ttgtgcttcc aatattttta atgcggcact
     5701 gatgacctcg ttggtcgaac cataacgccc actttcaacc atttggttca caaattggct
     5761 taatggctca gctaaagtta cgctggttgt tctactcatt actattccta tcttattgat
     5821 tattgagcag attgtaatgg ctctaattta gataagcaag cggtctattt ttagcaataa
     5881 tttgcaaaac aaaatgtgat ttacatcaca aaatcagcat tattttttgc gaataattcg
     5941 caataaggat attatgtcgc aatattttta ttaaaaggaa atttctatgc gtttaaccaa
     6001 acttgctttt gcacttttgc actttctggc ttttttgtgg ctactcaagc ggcagcttta
     6061 gacttaacta aggaaaccga ggcttataaa caatttgtgg tagaacagat tgaccaactg
     6121 gttaccgata cggaaaaatt tgtcggctac ttaaacaaag gcgatgtgca aaaagcgaag
     6181 aaaatttacc cgcttgcaag aatgtatttt gaacgttctg aaccgattgc agaaagtttt
     6241 ggcgatttag accctcgtat tgatgcccgt ctggcagatt tagccgaaga aggtaaaacc
     6301 gagaaagatt ggtcaggttt ccataaaatc gagaaagtat tgtggcagaa aaacaccact
     6361 aaaggcacaa aagcaacggc agaacaatta ttaaaagatg taaaagagct gcgtgcgaaa
     6421 attcccactg cagaagttac ccctgagccg atgattaccg gtgcggtaga tttattaaac
     6481 gaagtttcta ctactaaagt aaccggtgaa gaagaaattt tctctaaaac cgacctttac
     6541 gattttaaag ccaatattga aggtgcagaa aaaatctatg agatttttaa aacgcaatta
     6601 gagcaaattg atgccaaact ctcaacagaa atcggctctc gttttgcggc tgtcaatgcg
     6661 ctgttagcaa aacacaataa atctaaaacc ggttatgatt atgtgcctta taacaaactg
     6721 tcaaaagcgg atattaaagc gttagcagag gctgtaaacc aattaggcga gccgttagct
     6781 caacttggcg tacttttaaa taaatagtgg agcaaaaatg atggcagaaa ccacttctcg
     6841 ccgtgatttt ttaaaacata ccgcattagt aggagcaggc ttattgtctg ctcctgcttt
     6901 cgctttggaa tcacgacaaa tatctgaaaa atctcaaaat caatacgact tttacggcaa
     6961 acatcaagct ggtattgtta gccctgcaca aaaacatatc tactttttag tgctggattt
     7021 agacaccact gacattgcca aagtaaaaac attgtttcaa aactggacgg aatatagccg
     7081 taacctcacg cttggcaaaa atgtgaaacc ttatagtgct aatgcttatg ttccaccggc
     7141 ggataccggt gaggcagata gcctttcggc acagaatctc actcttactt ttggcgtcag
     7201 tgccaatttc tttacaaagc tcggcattga aaaacataag ccgaaagaac tgaatgattt
     7261 accgcatttc cctcgtgatc aactacaagc agaatacacc ggtggcgata tttgcattca
     7321 agcctgtgca gacgatccgc aagtggcttt ccacgctgtg cgtaatttgg tgcgtgttgc
     7381 ccgtggtgaa atcaaaatga aatggtcgca aatggggttt aactcctttg ccaatcaaga
     7441 cacacctcgt aacttattcg gttttaaaga cggcactgcc aacgcagaaa gtttaaaaga
     7501 tcaggaaaat acggtatggg tgcaacaaga gggctggctc aaaggcggtt cttatttagc
     7561 cgttcgccgt gttaaaatgt tcttggaaac ttgggatcgc acccatctcc aatcccaaga
     7621 agaaaccttc ggtcgtcacc gtgattccgg agccggaatc gggcatcagc acgaatttga
     7681 taaattagat ttagccaaaa aagacgaaaa aggcaatgca gtaattccgg aagtttcaca
     7741 cgctcatctt gccaataaaa cggggctgaa aatcctacgc cgttcattct cctattcaag
     7801 cggtattgat gataaagggc aatttgattc agggttgttg tttgtctctt tccaacaaag
     7861 tccggagcaa tttatcaaaa tccagaacgc tctcggcaat gtggataaaa tgaatgaata
     7921 catcactcat atcggcagtg gtttatttgc ctgttttgcc ggtgtgaaag atgaaaatga
     7981 ctaccttggc aaagcgttgt ttgatttaat ttagggaaaa ggaaatgaaa ttaaaagcat
     8041 tagtgctaat tccgttactc ttttcgagta caggattgct tgccaaagtg aatgtcagcc
     8101 ccttatttgt tcagctttcc gatgcaatgg cagagagtaa aaaaggggaa tttgcaaaat
     8161 ccagccaaaa tttgaccgct ttacagcacg attttgagca gattagccag cacgattccc
     8221 tcgccggagt tgaagtacag accgctctga aaaaagcgat tgaaacaccc aatgctgaaa
     8281 acttagagag cctttctaaa aactctatgc gtttgaaaaa gaacaaaacc ctagcggtta
     8341 tgctgaaaaa catcaggatt ttgtggcaaa aatgacgccg ctttatgcag aacttgctca
     8401 aaccgtgcca actcaagaaa tcgccaaaat caaatgggcg gcttatcagt ttggtaagaa
     8461 ttgggtaaaa caggaaaaag cagtacggga aatcagtctt ccccattatg gcaaatttga
     8521 gcgtattctt ggtttaatgc gaattaatct gaacgctgaa aagccggata tggcaaaaat
     8581 cagtgaactg gtttccgaac taggtgtggt aatggcagac tttaagcaag ttaaagtgaa
     8641 atagtaaaaa atcggggcaa attatttgcc ccgataacac taaaataacg tccaaatcgg
     8701 tttacattct tggggtaatt ccaaactttt accgagctca atccagccag ttgggtagtg
     8761 gaaatcagaa ccgaccgagc catataaatc aaactctttt gcccaacggg caagtaattg
     8821 ccgttgatca ggtgtttgtc cgcagcctga tacttcaatg ccatcgcctc cggcttgttt
     8881 gaaatctgcg attaaacggc gaatccaacg agcagtcatt ttatagcgta gcgggtgagc
     8941 aatcgaaatc acaccgcctg aggtgtgggt aacattcacc gcgtcttcta aactactcca
     9001 tctcggtttc acataggcag gtttccccat tcccagataa cgcttaaagg cgtgttcaat
     9061 attgcggaca tagccttgtt catacaaaaa acgcccataa tgtgcccgag ttacttcccc
     9121 tgttgccaac gcttttgccc cctcataggc atttgcaatc ccgacttttg ctaatttttc
     9181 accaatttcg accgctctct cttcccttaa ttgggcttgg ttatccaaaa acttcaccag
     9241 ctcctcgttg ttttcatcaa tattcaacgc cgcaagatga atactttttt cttgccataa
     9301 aatcgaaatt tccaccccag agataagctc aagcggttga ttttgggcaa aatttttcgc
     9361 ttcttgaatg cccgaaatcg tatcgtgatc agttaaagct agcattgtta ccccttgctc
     9421 taccgcacgt tgtaccaatt cagtgggaga aagtacgcca tcagaggcgg tactgtgggc
     9481 gtgtaaatca tatttcattt tatttatcct taaattaagc cggcagtcct gaaaaattgg
     9541 cgataggctt cggttttgtt ggctaagctg agtggataag ccctcgacgt cgaaggcagg
     9601 cgatataaat aaagttctct tgtggcggaa taaggataga ccacccattc gttggttttc
     9661 ggagctttgt gtttttccgg caataaaccg agcaacgtat cggttgccaa accacctgtg
     9721 gtaaatagcc atttcagttt gggtaatttg agcaacagtt cgtccatatc gataggatca
     9781 acaattttta aatctttatc tgaagcgttt ccttttaaac gaatcgctgt ttttgccgaa
     9841 gaacagagcg caacgccctt ttctcgcaaa aacgcctcaa tccgaatcgg atcaaagcgt
     9901 ttttcttcac caactcgaaa atagttaggg tcagcataaa aaatattgcc cataattcgc
     9961 cacatatcat tttgaaaatt cgggtaatga aattccatac aacgcttttc cgatgtaggt
    10021 ggaaaagtgc cgaccattac caccgttgct tgttcaggta aaatagggtc aaacgggtgc
    10081 tgttctagcg gtaaattatc cattgtcatt taatcaactc ttttaacatc ttgagctttt
    10141 cggttttatc taggggctgt tccgctactc tgttaagctc gctcagcaat ttttcatctt
    10201 ttgcaacatt ttgacgataa atgaccgctt gttgttgcga aatctgctcg gcgtaagcgg
    10261 tcaaattttc taataatttt accttttccg ggttgtcgtg atgttgttgg aacaagtcgt
    10321 caatcgattg ggcgaactgc gctgcttttg cctcaatttg ctggttgcaa tgtttctgcc
    10381 atttgatctg ctcggctcga ctgagtgttt gtggatagtg ccttgctcgg taatggaata
    10441 gtaacgcctc tactcgaggg tcttcaaatt tcaagccgtg gttggctaaa tcttcaggcg
    10501 gtagcgtgcg taaaatcgcc atattatttt tatccgcagg cgagaaaaag ccgtcataca
    10561 aagtggtttc tacattggtc gaaggctcaa acgtgcgttc ttcattaaaa atttcaatca
    10621 ctttttcccg aatcagcgat ttctgtgctt ttaaagtttt caaattttcc aaacataaag
    10681 ctctgtctat gcctaaacgt tctgcatttt caggcagtaa ggtttttgcc ggtgctaaaa
    10741 tcgggcattt attaatatgc actaatttta acggcacagg taactcattt tcggctaatt
    10801 catctcgttt ggtgtataaa cgctgacgta aaacctctgc attttcagtc aataagccat
    10861 tcatatcgcc cgataaatca cacacaatta cggcattttg attagttgag tgccaagcca
    10921 gtggcacaac ccaagcggta tttcctcgat agttgcccag cataccggaa acgtgcacaa
    10981 gcggtgtcat ttcaccagtg tcaattaact tctctacttc ttttttactg cgtaaattaa
    11041 agaaaaaatc gaacaacttt ggctgttttt gcttaattaa ttttgccatt gcgatggtgg
    11101 catacacatc agacatcgca tcgtgtgcat tttcatgggc aatgccattg gctttggtga
    11161 ggttttccaa tttaaaactt ggcataccgg tttcatctgt tggccattca ataccatcag
    11221 gtcttaacgc ataacaggca cggactaaat ctaacaagtc ccaacgagaa tttccgtttt
    11281 tccagctata ttcgtaagga tcgtaaaaat tgcggaagaa ggtataacgg gtcatctcat
    11341 catcataacg aatattgtta taaccgatag tacaagtatt cgctcggcta aattcagcgt
    11401 gaattcgggc tgcaaattcc ggctcagata caccttcagc gttacattgt tgcggtgtaa
    11461 tcccggtaac catcaccgct tcggggctgg gtaaataatc cggcgtttgc ttacaaaaaa
    11521 acattaccgg ttcaccgata atattaaaat ccgcatcggt tcgaataccg gcaaattgtg
    11581 ccggacgatc taacgccgga ctcacgccga aactttcata atcgtaaaag aaaaaagaga
    11641 atttatcgct cattcgttca atttgttaga aaaaattggg ctgattgtag cacagtaagg
    11701 cagaaaggag ggaatacaag cggtcaattt ccgttagaaa tttgcaaatg ctaaaataaa
    11761 aaaagcccct aatcaaaaaa gcgaaaaggg gcggaagtct tacctaagga aatatgaaaa
    11821 aaacttgcat aaatctgtta catatactca gactgcctaa ctgaacgaaa gttcattaaa
    11881 aaataaaaaa ttttttaaca ccaagcaaaa tcagattt
//
LOCUS       DANMGB010000071        11660 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.071, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000071 DANMGB010000000
VERSION     DANMGB010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11660
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.071"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            87..833
                     /gene="znuC"
                     /locus_tag="PXG19_001430"
     CDS             87..833
                     /gene="znuC"
                     /locus_tag="PXG19_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HDL6066724.1"
                     /translation="MVSLENIEVSFNGQKALQNINLSIYPNSITTIVGPNGGGKSTLL
                     KILLKLLSPNKGKVIHQKGLKIGYVPQKLHLEPSMPITVYRFLALKPHTTKEMINQAL
                     DLFSITHLTENSMQKLSGGELQRVLLARAILDRPQLLVLDEPMQGVDIIGQTELYQLL
                     NKTRDLLNCAILMVSHDLNIVMANTDEVLCINKHICCAGSPEVITHDPSFIHFFGDQF
                     ARNVAFYSHKHNHHHNLHGDICLGECSCEH"
     gene            998..3811
                     /gene="sucA"
                     /locus_tag="PXG19_001431"
     CDS             998..3811
                     /gene="sucA"
                     /locus_tag="PXG19_001431"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL6066725.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            3914..5143
                     /gene="odhB"
                     /locus_tag="PXG19_001432"
     CDS             3914..5143
                     /gene="odhB"
                     /locus_tag="PXG19_001432"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL6066726.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5436..6596
                     /gene="sucC"
                     /locus_tag="PXG19_001433"
     CDS             5436..6596
                     /gene="sucC"
                     /locus_tag="PXG19_001433"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL6066727.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6605..7474
                     /gene="sucD"
                     /locus_tag="PXG19_001434"
     CDS             6605..7474
                     /gene="sucD"
                     /locus_tag="PXG19_001434"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL6066728.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7545..8990)
                     /locus_tag="PXG19_001435"
     CDS             complement(7545..8990)
                     /locus_tag="PXG19_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL6066729.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
     gene            complement(9095..10081)
                     /locus_tag="PXG19_001436"
     CDS             complement(9095..10081)
                     /locus_tag="PXG19_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL6066730.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGVFFKR"
     gene            complement(10072..10710)
                     /locus_tag="PXG19_001437"
     CDS             complement(10072..10710)
                     /locus_tag="PXG19_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL6066731.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            complement(10771..11149)
                     /gene="rnpB"
                     /locus_tag="PXG19_001438"
     ncRNA           complement(10771..11149)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXG19_001438"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT         3656 a         2510 c         2305 g         3189 t
ORIGIN      
        1 ttatatcaat gaaaatccat catcttaaac cgaatctaaa taccactaca tttgaactat
       61 tcaaacagaa tttatccgcg acatcactgg tttctcttga gaatattgaa gtgtctttca
      121 atggacaaaa agcattacaa aatattaatt tatctattta tcctaactct atcacgacga
      181 tagtcgggcc aaatggtgga ggaaaatcta ccctgcttaa aattttgcta aaattactta
      241 gcccaaataa aggaaaggtt attcatcaaa aaggactcaa aattggctat gtaccacaaa
      301 aattgcattt agaaccctcg atgcccatta ctgtttatcg atttcttgcg ctaaaaccac
      361 atactaccaa agaaatgatt aaccaagcac tagatctgtt ttctattacc catctcactg
      421 aaaatagtat gcaaaaatta tcgggtggtg aacttcaacg tgtattgctg gctcgggcaa
      481 ttttagatcg tccgcaactc ttagtgttag atgaaccaat gcaaggcgtt gatattatag
      541 gccaaaccga actctatcaa ttacttaata aaacaaggga tctccttaac tgtgctattt
      601 taatggtctc acacgactta aatattgtga tggcgaatac agatgaagtg ctttgcatca
      661 ataaacatat ttgttgtgcc ggaagccccg aagtcattac acacgatccg agctttatcc
      721 atttttttgg cgaccaattt gcacgtaatg ttgcatttta ttcacataaa cataaccatc
      781 accataattt acatggcgat atctgccttg gtgaatgtag ttgtgagcac tgataggcgt
      841 cctttttacc aaatgtttaa aatttgtaaa aataatgcta aaaataaccg cttgcagcac
      901 aagatttatc taaaaatcag acttacttca cattttattt gcttaaattg gagtataata
      961 agggcgtgat ttcataccac aaacaggtca ggtctttatg caatatacac attttgatga
     1021 ttggcttgca tcatctgcat taggcggtgc aaaccaatct tatatagaag aaatttatga
     1081 acagtatcta gaaaatccag caaatgttga tgaaagctgg agaaacatct ttgattcatt
     1141 tcctaaaact ccccaagttg aacaagctca cacccctatt cgtgactatt tccgtaaatt
     1201 agcccgtgaa cagcaacctc aatccgtcac tattattgac ccagaagcag gggcgaaaca
     1261 agttcgctta ctgcaatgga ttaacgctca ccgtttccgt ggctatttag aggcaaaact
     1321 agacccaatt aactattacc gttggaaaac ctccagcgtg cctgaattgg actacaaata
     1381 tcacggcttc accgatgaag atctcaacga aacttttacg gtcggtcgct atgtctatga
     1441 taaagacaca atgaagctca gcgaactgga taaagcccta aaagaaactt atttagggcc
     1501 tattggttta gaatttatgc acgttcaaga tattgaacaa cgcaactggc ttcaagccaa
     1561 aatggaaagc gtgctaaaca aaccgctgtt caccaaagca gaaaaactga atttattaag
     1621 cgaattgacc gctgccgatg gtttagagcg ttacttaggg gcaaaattcc cgggggcaaa
     1681 acggttctca ttggaaggta gtgatgcctt tattccgatg atgaaagaaa ttatccgcca
     1741 cgcttcccgt caaggtatga ccgatgtggt tttaggtatg gcacaccgtg gtcgtttgaa
     1801 tatgttagtg aacgtatttg gtaaacgccc ggcagaattg tttgatgaat ttgccggcaa
     1861 acacgctgat gaaagccgca cgggcgatgt gaaataccac caaggtttct cctcaaactt
     1921 tgccgtagat gataaaaacg ttcaccttac ccttgctttc aacccatcgc atttagagat
     1981 tgttagcccg gtggtaatcg gctcagtgcg tgcaagacaa gaacgtatgc gtgatatcga
     2041 acacgaaaag gtgcttgcgg tgaccgttca cggtgactct gcagtggcag ggcaaggtgt
     2101 agtgcaagaa accttaaata tggcaaatgt tcgtggctat aaagtaggag gcactatccg
     2161 tattgtgatc aacaaccaaa tcggatttac cacctctaac ccaaatgaca cccgctccac
     2221 cgaattttgt accgacattg ccaaaatgat tcaggcaccg attattcacg ttaatggtga
     2281 tgatccggaa gctgttgcct ttgcagcgag aatggctgtg gaatatcgta ctaaatttaa
     2341 acgtgatatt tttattgatt taatctctta ccgtcgtcac ggtcataatg aagccgatga
     2401 gcctttagca actcagccaa tgatgtatag catcatcaaa aaacacccga cacctcgcaa
     2461 agtctatgcg gatcgtttaa ttaccgaagg tgttttaacc aacgagcaag aaatcgagat
     2521 gttaaacctg tatcgtgatg ccttagacaa cggcgaatgc gttgtgccgg aatggcgtga
     2581 aatggatatg gcagcggtcg attggctaca atatctcaat tacgactgga ctgccctata
     2641 cgaaagtaaa ttccctgaag aacgattctt aaccattgcc aaacgggtgt gcgaatatcc
     2701 ggcttcgctt aaagctcatt ctcgggttga aaagatctac actgatcgca aagagatgta
     2761 tgaaggcaag aaattattcg actggggtat ggctgaaaca atggcatacg ctactttgtt
     2821 agacgaaggc acacatgttc gcctttcagg agaagatgcc ggacgtggca ctttcttcca
     2881 tcgccatgcg gtaatccata accaaaatga tggaacaggc tatgtgccac ttactcaact
     2941 gcacgccaat caagggcgtt tccaagtatg ggattccgta ctctctgaag aagcggtact
     3001 cgcctttgaa tatggctttg ccactaccga cccgaaaaca ctgaccattt gggaagctca
     3061 atttggagat ttcgctaacg gagctcaaat tgttatcgac caatttatca gctcaggcga
     3121 acaaaaatgg ggcagaatgt gcggtttagt gatgttatta ccacacggct atgaaggtca
     3181 agggccggaa cactcctctg cccgagtgga acgctattta cagctttgtg ctcagcaaaa
     3241 tattcaagtt tgcgtgccat caacaccggc acaggtttac catatgttac gccgtcaagc
     3301 gatccgcaaa atgcgtcgcc cattggttgc aatcacacca aaatcattgc tacgccaccc
     3361 acttgcggtg tcatctcttg atgaattgat taacggttca ttccaaaatg tgattggcga
     3421 gctcgataat atcgatccta aacaagtcaa acgtgtggtg atgtgttcgg gtaaagtgta
     3481 ctacgactta attgaaaaac gccgtgaaaa taaccaaacg gacgttgcca ttattcgtat
     3541 cgaacagctc tacccgttcc cacttgaaga aatgcaacaa attctcgagc cttacgctca
     3601 cgttaaagac tttgtctggt gtcaagaaga gccactaaac caaggtgcgt ggtattgcag
     3661 caagcacaat tttgaggctt ctctgccgga agatgcaaaa ttaacttacg caggcagacc
     3721 ggcttctgct tcaccggcgg tgggttatcc atcgttacac gcaaaacaac aaaaacaact
     3781 tgttgaagat gctttaacga tcgctgaata ataaaatggg cgtatatacg ccctacaagc
     3841 ggttcacttt taaccaaatt ttacaattta cgctgtcgga gttttaaaac tctctcgaaa
     3901 aaaggaataa gttatgacca ttgaaatttt aacccccgat ttacccgaat ctgttgccga
     3961 tgcgaccgtt gccacttggc ataaaaaagt gggcgacaat gtaaaacgtg atgaaatttt
     4021 agtcgaaatt gaaacagaca aagtcgtttt agaagtaccg gcttcaagcg atggtattct
     4081 tgcagaaatt acccaagaac aaggtgctac tgttgtatcc aagcaatctc tgggtaaatt
     4141 agtagtagct aaagccggtg atattagctc tgcaactatt gagcaaaaaa cagaatccac
     4201 gccatcagac cgcaaacacg cagcaattga aaacagccac gcgaacgctg atgatcaagg
     4261 gcctgcgatt cgccgtttat tagccgaaca cgacttacaa gccgctgata ttcaaggcag
     4321 tggtgtaggc ggcagaatca cccgcgaaga tattgaaaaa gagattgcca aacgagtgca
     4381 aatcaaccaa gtaaaagggt ctgcaaccag ccaaaacacc gttagcactg tagcatttaa
     4441 cagccgtagc gaaaaacgtg tgccgatgac acgactccgc aaacgtattg ccgaacgctt
     4501 actagaggca aaaaacacca ctgcaatgct cactactttt aacgagctgg atatgcaacc
     4561 aattatgaat ttacgcaaaa cctatggcga aaaattcgaa aaacaacacg gtgtgcgttt
     4621 aggctttatg tcgttctaca ttaaagccgt ggttgaagca ttaaaacgct accctgaaat
     4681 caatgcctcc attgatggcg atgatgtggt ttatcataac tatttcgaca tcagcattgc
     4741 ggtttctacc ccacgaggct tagtcacacc tgtgttgcgt gattgcgaca aaatgagtat
     4801 ggcagatatt gagaagaaaa ttaaagaact tgccgaaaaa gggcgtgacg gcaaattaac
     4861 cgttgaagac ttaaccggcg gtaactttac catcaccaac ggcggggtat tcggttcatt
     4921 aatgtccacc ccaattatca acccgccaca aagtgcgatt ttgggtatgc acgctattaa
     4981 agaccgccct gtcgccattg acggacaagt agtgatccgc ccgatgatgt acctagcctt
     5041 aagctatgac caccgtttaa ttgacggtaa agaatctgtc ggtttcttag tggcagttaa
     5101 agagttatta gaagacccaa cccgtcttct tttggaaatt taatcgaaaa tatgaccgct
     5161 tgtactttta gctacaagcg gtctgttttt aataaaattt gacaaaatcc gataaacgct
     5221 ctatttgagt tcccttctga gccacctgag cgactttgaa tttgtaggaa aaatttagtg
     5281 tttgagctta caaggcaagc gagttataaa tttttccgtc aagcaaattc aaactaagcg
     5341 aagaaagtgg cgaagcaggg tgtgctttct tttggttact tttctttgca caagcaaaga
     5401 aaagtaacat aaaaaaaacc aaacgaggaa actctatgaa tctacacgaa tatcaagcaa
     5461 aacaaatatt caaacaatac gggcttcccg taagccaagg gattgcttgc aaaacggcag
     5521 aggaagccgt tgaggcaatt aaacaactac aaggtgaaca atgggcgata aagtgccaag
     5581 ttcacgctgg tgggcgtggc aaagccggcg gggtgaaact ggttcgcaat gaagccgaag
     5641 tgcgtgaatt tgccgataaa tggctcggca aacgcttagt taccttccaa accgatgcta
     5701 atgggcaacc ggttaatacc ttatatttag aagaaacctg caatatcgac cgtgaattgt
     5761 acttaggtgc agtggttgat cgctccgctc aaaaagtgat ttttatggca tcaagtgccg
     5821 gtggtatgaa tattgaagaa gtagcggaga aaacccctga attaattcac aaagcggtaa
     5881 ttgacccact caccggtggg cagggttatc aagggcgtga attagcattt aaattaggct
     5941 tgaaaggtga tgaagttaaa caatttgcgg atattttcgt gaaactggct aacctatttg
     6001 ttgaaaaaga tttagcttta ttagaggtaa atccacttgt catcactaaa gaagggcaac
     6061 tactctgctt agatgcaaaa atgtcgattg acagcaatgc tctctaccgc cacccagaac
     6121 ttaaagagtt gcaagaccca tcgcaagatg acgaacgtga agctgaagcg gaaaaatgga
     6181 atctcaacta cgttgcacta gatggcaata tcggctgtat ggtaaacggt gcggggctgg
     6241 caatggggac gatggatatc gtcaaacttt atggtggtaa accggctaac ttcttagacg
     6301 ttggcggtgg tgcaaccaaa gagcgtgtag cagcagcttt taaattgatt ttatctgatc
     6361 cgaatgtgaa agccgtgtta gtcaatattt ttggtggtat cgtccgctgc gatttgattg
     6421 ctgatggcgt cattgctgct gtaaacgaag tcggcgtgaa tgtgcctgtt attgtgcgtt
     6481 tagaaggcac taatgccgca caggggcgtg agattttagc caatagcggg ctgagtattc
     6541 tagcggcatc atcattaaaa caagcggctg aattagcggt aaaatctgca aattaggagg
     6601 aaaaatgtcg attttaattg ataaaaacac aaaagtaatt tgccaaggtt tcaccggcgg
     6661 acaaggtact ttccacagcg aacaagccct tgcttatggc acacaattag tcggcggagt
     6721 ttcgccgaat aaaggtggca caacccattt aggcttaccg gttttcaaca ccgtacgcga
     6781 agcggtagaa gcaaccggtg caactgcaac cgttatctac gttccggctc ccggctgtaa
     6841 agatgctatt ttagaagcca ttgatgccgg catccaacta attgtctgta ttactgaagg
     6901 cattccaacc ttggatatgc tacaagttaa acaacgtcta aaccaaaccg gcgtgcgaat
     6961 gatcggtccg aactgcccgg gtgtgattac ccctgatgag tgcaaaatcg gcattatgcc
     7021 gggcaatatc cacaaaaaag gcaatatcgg tattgtttct cgttcgggta ctttaaccta
     7081 tgaagcagtt aaacaaacaa ctgacgaagg ctttggtcaa tctacttgtg tcggtatcgg
     7141 tggtgatccg attccgggat ctaactttat tgacatttta aaactgttcc aagacgatcc
     7201 tgaaactgaa gcaattgtga tgattggtga aatcggcggc tctgccgaag aagaagcggc
     7261 agctttcatc aaagaaaatg tcaccaagcc tgtagtcagc tatattgccg gtgtcaccgc
     7321 accaaaaggc aaacgaatgg gacacgccgg tgcgattatc agcggcggca aaggaaccgc
     7381 cgatgaaaaa ttcaaaatcc ttgaagatgc cggtgtgaca accgtcagaa gtttagccga
     7441 aatcggttca gctcttagaa aaattttagg ctaaactaaa agttcaagca gtcatattta
     7501 cccatttttt tgtaaatatg accgcttgtt tttttgctat taaattactc tttcgatttc
     7561 caaattaatg ggtcaacacc tttatggata aggtcttgat gttcttcaat tctaaacact
     7621 ggctctttgc cacttttcac ttggcgaaga tagtctttta aaataatcca gacaatcgga
     7681 gcaagaatta agatagccac caagttaatt accgccattg atgccatcac tgtatcggca
     7741 aatgcccata caatccctcc gtctcttact gcaccgaagt acacaaagaa taaaacgatg
     7801 gcacggaatc cccacacaaa ccacggactg tttttaatgt agcggatatt agtttctgca
     7861 taagcatagt taccgataat ggatgtgaag caaaacagta aaatcacaaa tgctaaaaag
     7921 tgtaaaccaa attcacctaa atggaattgt aacgcacttt gagtaagtga aatacctctt
     7981 aaagtttcac caccatagtt atttgacata agaatgatca ctgcagtaca agtacagact
     8041 acaattgtat ctacaaatac gcccaacatt tgaattaagc cttgacttgc cgggtgtttc
     8101 gcatcagaag tcgctgcaga atttggtgca gatcccatac cagcttcgtt tgagaataag
     8161 ccacgtttaa tccccattag catagttttg gataccaatg ctccaaacgt tccacctgca
     8221 gcagcagaaa aatcaaaggc gctttcaata attaaagaga ttatacttgg cactttttca
     8281 atattcatac ctaaaataat tactgcaata atcaagtaga ataatgccat cattggaaca
     8341 acttgggcag aaactttacc aatacgcttg acccctccag aaataattaa ccctgtaatc
     8401 accactaatg tcatgcctac gtagactggg ttccaatccc acgcattttt ggttgcttcc
     8461 acaatagagt tagattgcac agcattaaaa gcaaaaccaa aggtgaagat aagcgtcact
     8521 gcaaaagcaa tagcaagaga aggcagtttt aaaccacgag tgatgtaata ggctggccca
     8581 ccacgaaaca ttccgtttgg atctttggtt ttatacaact gagccagtga agactcagca
     8641 aaggcggaac tcattcccat taaggcggta atccacatcc agaataccgc acccggccca
     8701 cccaaagcga ttgcagtagc taccccacca atattaccaa ccccaacacg gctggctaat
     8761 ccagtagtaa aggcttggaa cggagttaat gatttccctt ccgtagaacg tcctccccac
     8821 atttcacgta aactttgcgg aagaagacgc agctggacaa aacctgttgt aagagtgaaa
     8881 aataaccctg caccgagcaa taggataatc gttacatccc aaagtggacc gtcgattgtg
     8941 ttcacaatcc aagtcagtac actctcaaaa aatagaataa ttgaatccat aaagacctct
     9001 taattgaaaa taaaacttcc acattgtaac cgatttaata tttttaaaaa gtttttttaa
     9061 tacttttaat aaaaattttt aataacttat taatttagcg tttgaaaaaa acgcctgtac
     9121 cagcatcaat gaaactactg tgaaataata ccattccaaa tagaattaat gcgagtccaa
     9181 gtgtaaattt taatatccaa acgatatttc gattaatttg agctgaaaaa taccattggc
     9241 taaccttaac tgccttattt ctcgcaatga taacaagata agcaaataag cttaaagtca
     9301 gccctgttcc tactgccata gctaatgctg aaataacccc ccaagcatag agattgagcg
     9361 tataagaaag aaataaaaca agaatagcgc cagagcaagg tcttgagcca atacttaata
     9421 ccaacatcag ctgtgctttc caatctctca cttgttgcat ttcatttgaa gtcggtaaat
     9481 gtttatgcct acagctacaa ttttcggtat gaatatgccc tttctgcgtg acaagcggta
     9541 attttccagc ttttttttgc gaaatacgaa tggatttaat gataggcttt cgcgctctgt
     9601 tcaccgttcg atacacctgg taacaccagt aaatgccgaa caagatcatc aaaccaaagc
     9661 tcccccgctc aacccatttt agggttaaat taaaatattg gcgagagaga gtaaaaatca
     9721 ccacaatcac cgtcaccaat gaaattgcca ctaagccctg caccaatgct gaggcaaaag
     9781 tgattttcat cgcctgattt aattttgttt tttcaaaaga aagataactg ctcagaataa
     9841 attttccgtg accaggccca actgcgtgaa atactccata taaaaaacta ataaatacta
     9901 aggtaatacc ggctttactt tgattttcag ctaattcatt gagcgaagcg gaaagctgta
     9961 aattaaagtt tttttgccat tccatcactt taaacaatat cattggataa agctgataaa
    10021 gagcaaatag gctcaaaaat cctatcacta tcattcccca atatgttgct tttaatcgca
    10081 tataatctcc actttttgag caaattgggc accaagagag taatctccat tttcaggcat
    10141 atccagtgat tggtttttat ccaaaccgga agcatataag cgtaacttac tatctacttg
    10201 aggttgcacc aatgttgctt tacaacttgc attactggta ttgacatcag cagggcgatt
    10261 atattccatc gcaatataat aactcggttc ataagtatag aatctcactt tactctgctt
    10321 taattcgtga ggtttagcta aatgaaaagt aatataaaaa atcactctgt tattcttgat
    10381 ttcaaagcga gtcgctgtgg gctttgtcgt aaattttatc ggctgatttt gactatcata
    10441 taaggtgcta aaataatgat tttgcaatgc ggtttgcacc atttctgcag tgatattctg
    10501 ctgagttttt tctttatctt ggctattttt cacttcataa attaactcag aagaagcaat
    10561 ttcatctagc atccattcca tttggaaaga tttcaacatt gagccttcca caataacatt
    10621 cgttttcaaa tcaacaaatg aatgtgggtg agaaaaaact ggcattgaat ataatgcaat
    10681 taacgtgata atcgtcttaa taaatttcat atttactttc actataaaat aaaaaagcga
    10741 acaagttccc cctgttcgca tttcaagaat ttagtgagtt ggtcgataag ccgagttctg
    10801 tcgtggacaa tcattcctct agacgtacat ttacacatac gctcaagcaa cctacccgaa
    10861 ctctcagcgg gccaccgatt gagttcctat ttggtcttgc tacgagtgga gtttaccctg
    10921 ctgtggaatg ttaccaccca cacggtgcgc tcttaccgca ccctttcacc cttaccgaca
    10981 aagccggcgg tctgctctct gttgcactgg tcgtaggctc acgccccccg gacgttatcc
    11041 ggcactctgc cctgtgtagc tcggactttc ctctcgttta cttgtccccc agtttacgtt
    11101 ttcacgaatt tagaggcttc aataaaccag cgattgccta accaactcag cactagagta
    11161 taatgctttc gcaaaaaatt gcaaggaaat aaccgcttgt agttattatg gcaaaataaa
    11221 aaaggattaa gttcatttaa aaacttaatc ctcttcgctt taattcactc gtaaaaatta
    11281 cgcacgtttg aagtctaagt gaactaattt tggtttctct attttattac aataatttca
    11341 aagggttatt taatcaattt cctttctatt tccgaaacta tatacatttt tccgaaactc
    11401 aaattttaat cagattataa aacaagctat tttccttttt tctcattcca aaaataccat
    11461 ccaaaacatc ttaccgccaa ccaagtgctc cacgcaaaaa taggtctatt ttgcgcaatc
    11521 aaacaatccc ttaaccgctt atctgcttcc gctctactga cttttccgtt tacgcccacg
    11581 atcgtgttga tgacagcacg aattaatatt ttcaggggcg tgtaccgcaa tcaattttaa
    11641 ttataaccaa ttgtttttaa
//
LOCUS       DANMGB010000072        11421 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.072, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000072 DANMGB010000000
VERSION     DANMGB010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11421
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.072"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            15..176
                     /locus_tag="PXG19_001439"
     CDS             15..176
                     /locus_tag="PXG19_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066732.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            184..546
                     /locus_tag="PXG19_001440"
     CDS             184..546
                     /locus_tag="PXG19_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066733.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            559..1476
                     /gene="nagK"
                     /locus_tag="PXG19_001441"
     CDS             559..1476
                     /gene="nagK"
                     /locus_tag="PXG19_001441"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL6066734.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(1547..3496)
                     /locus_tag="PXG19_001442"
     CDS             complement(1547..3496)
                     /locus_tag="PXG19_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL6066735.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(3529..4317)
                     /locus_tag="PXG19_001443"
     CDS             complement(3529..4317)
                     /locus_tag="PXG19_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL6066736.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            4442..4672
                     /gene="xseB"
                     /locus_tag="PXG19_001444"
     CDS             4442..4672
                     /gene="xseB"
                     /locus_tag="PXG19_001444"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL6066737.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            4678..5571
                     /gene="ispA"
                     /locus_tag="PXG19_001445"
     CDS             4678..5571
                     /gene="ispA"
                     /locus_tag="PXG19_001445"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL6066738.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(5606..6406)
                     /locus_tag="PXG19_001446"
     CDS             complement(5606..6406)
                     /locus_tag="PXG19_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL6066739.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(6531..7316)
                     /gene="znuB"
                     /locus_tag="PXG19_001447"
     CDS             complement(6531..7316)
                     /gene="znuB"
                     /locus_tag="PXG19_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL6066740.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(7403..8740)
                     /locus_tag="PXG19_001448"
     CDS             complement(7403..8740)
                     /locus_tag="PXG19_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL6066741.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(8750..9238)
                     /gene="mreD"
                     /locus_tag="PXG19_001449"
     CDS             complement(8750..9238)
                     /gene="mreD"
                     /locus_tag="PXG19_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL6066742.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(9238..10293)
                     /gene="mreC"
                     /locus_tag="PXG19_001450"
     CDS             complement(9238..10293)
                     /gene="mreC"
                     /locus_tag="PXG19_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL6066743.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(10395..>11421)
                     /locus_tag="PXG19_001451"
     CDS             complement(10395..>11421)
                     /locus_tag="PXG19_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL6066744.1"
                     /translation="SNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQDRMGSLKSIA
                     AVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNNFMRPSPRVL
                     VCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMGSMVIDIGGG
                     TTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERIKQEIASAKI
                     ESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSVLEQCPPELA
                     ADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKALEMIDMHGG
                     DVFSIDD"
BASE COUNT         3542 a         2534 c         2162 g         3183 t
ORIGIN      
        1 ataaggagct tagaatggaa atgtcgatag aaaaaatagc tgaactatta agcgataaag
       61 aaaaagatga ctatccgttt agtattgagg aaagacaatt tgccgcccag gctagtgctg
      121 atacttggga ggcaatctta aataacacta ttcaaccttt tgacttcaaa aaataggctt
      181 gctatgtatc aagtttttat tgcagaacca aaagacccaa acttagagaa aggcttattg
      241 aaacacttca ttaagtctta tcttactcaa gaagaactcg atttcctgca taaaattctc
      301 actaatttac ccaacatcag acctttttgg ggcgataccg gttacaaata tatcgtcatt
      361 gataatgttt acttcttgta tgaagtttcc gaaagtgaaa cgaaagtcat tctacttggc
      421 accaaattta ataataaacg gaaaactttt aattttgcga atacgaaaac ccagcaaaaa
      481 tcaatgaaga aatggattaa tgatttagca atttataaac cgcataaaat caatcaatcg
      541 caataagaga gcgtaattat ggcaatttat tatggcttag atgtgggcgg cacaaaaatt
      601 gaattagccg cttttaatga aaaactagaa aaactacaca gcgaacgtgt gccgacaccg
      661 cagacaaatt atcaagattg gctgacggca attaaaacgc tggttgagac tgccgataca
      721 aaatttgacg aaaaaggcac tgtcgggctg ggcattccgg gctttgtaaa ccgtgaaacc
      781 ggcattgcgg aaattaccaa tattcgagtg gctgacggca aaacgattct gaaagattta
      841 gccgaatgtt tagggcgtga agtgcgtgcc gaaaacgatg ctaactgctt tgccctgtct
      901 gaagcgtggg acgaaagtaa taagccttat tccaccgtat tagggttgat tatcggcacc
      961 ggttttggcg gtggttttgt gtttgacggt aaaattcatt caggcagaat cggaatggca
     1021 ggcgaagttg ggcatatgca acttaactac cacgcactta aattgctcga ctgggataaa
     1081 gccccaattt atgaatgtgg ttgtggcaac caagcctgtt tagacaccta tatttcaggg
     1141 cggggttttg agttactgtt taatgattta gtaggagaaa aaatctcggc gaaagcgatt
     1201 atcgaacgct tctaccaaca agaaaccaaa gtggtggcat ttgtcgaaaa atatattgag
     1261 ctaatggcaa tcagtatcag caatctgatt acgattttag atccggatat gattgtattc
     1321 ggtggcggtt tatccaactt tgattatatc taccaagctc taccaaaagc attaccaaaa
     1381 cacttaatgc gttcagcgaa agtgccggtc atcaaaaaag caattcacgg cgactcaggt
     1441 ggcactcgtg gtgcagcagc attattctta aagtaatgaa caaatttgag agagggcaag
     1501 cggtcatttt taataaaaat attgcagccc tctcttttaa tttgccttac tgcttagttt
     1561 cttccggtaa tttatataac tgatttttat ataaataact gccaagcaat gcgtgtgcta
     1621 acgcctcttt tttaaacgat tccggctgtt ctttaggggt gagtttatag ttagctttat
     1681 cgtagctaaa tccttctatc ggtaaatttg gtcgcattac caccacatca tttccccgca
     1741 tcatcgcctg tgtcgcatca tattgcataa aggcacggtt tgggtcaatg tcttgcgtta
     1801 aatcataccc tatcatcgga tattgaccac ttattcccgc cacagaaagt aatgttgtcg
     1861 gcatatcgag ctgactcact aaacggttat ccgttcttgg ctgaatgtgt tcgcctaata
     1921 aaagtgccgg aatatggaag tgttgaattg gcactaaatg ctcgccaacg gctcttgaat
     1981 cgtgatctgc aatcactaaa aacaccgtat cttgccagta ctctgatttt ttcgctaact
     2041 caaagaaatg cccgatagca taatcggcat attttgccgc attatggcga gtctgcttcg
     2101 gttgttcata gagttcaatt ttgccgtccg gaaattcaaa cggatcgtgg ttactggaac
     2161 tgaataccaa actaaaaaac ggtttacctg atttgtgcag ttgattaaaa gtttcatttg
     2221 ccttatcaaa cagatcttca tcactcacgc cccaagttgc ggtaaattta gggtttttat
     2281 aatctttttc atcgataatt tgctggaaac cattaccgta gaaaaagctc gccatattat
     2341 caaaatgctt ctccccacca taaataaagg aagtatggta tccttgacgt tttaataatt
     2401 cggcaatact aaaaaagtta gtttggcttt tcgtcagttt taccacagat cttgccggtg
     2461 ttggtgtaaa accagccgtt accgcttcaa ttcctctcac cgaacgagta cctgttgcat
     2521 aaagattggt aaaataccag ccttgttctg aaagtttatc taaatttgga gtgagatttt
     2581 tccctcctag cgaaccgaca aattgagccc ctaaactttc ttctaagata atcacaatgt
     2641 ttttaggctt tccttgataa gtcgctttat tttgcgtgag ggtgggaatt tcatctgaaa
     2701 tataatctga agctggtcga ttacgaacct gcttaacaat gttgaacatt tcctccacag
     2761 acatttttcc atactgttcg gaagatttat cttcatcttt caattgctga accgcataaa
     2821 gcacggaata acctgaattt agcaccagtg aattgacaag cggatcgctt gaaaatgcca
     2881 ccattgccgg attaatccct cgatgggcaa aactggaacg cccaccaaca aaaactattg
     2941 cagcaaccaa taaagccagt agcggacgca ttttccagct cgggaaatgc aaatttttgg
     3001 ttgcccaacc cgataatttc caataaatga tgagagaaat catcgcaatg ccaatcccac
     3061 aaataacagc ccataaatgt ccgttaatca gcattgtgaa cacttctctc ggatggacca
     3121 aatactcaat gaaaagacga tttgggcgaa ggtcaaaggt ttcaataaaa ttcggtgtgg
     3181 cgacttccat aaaaagaata aatacactac cgacagttag ccaaattctt aaaacagtct
     3241 gccaaatcga acccagtaca tttttatgaa aacacaacac gctaaataat gccggtaagc
     3301 caaatagcca acatagcgaa gatatatcaa tgcgaatacc ttgtagtatt aatggtatcc
     3361 atccatcaac agcggatact cgatcagatt gccaaacgcc taacactaaa cgggataagg
     3421 tgaggataac taaattaatc ccaacaaata gtaggattgg aaatagcaca gttcttgatt
     3481 gactgcgttg gtacattttg aatctccttt taaaaaaata tcggcatatt ataattgaat
     3541 aatgacagga tcgcctactt ttatcacacc actgttttgt ggcacaaggt gaataccgaa
     3601 caccggctta cctttttcat cgcaatgctt ttcttttaag gttctaaacg gctccgattt
     3661 ggggtctaac tcaagcgtgt ttaaatcccg tgtaatcaaa atgcaacgag tacataatgc
     3721 cgctttggta aatagcactt cgccaatttg aacttgttgc cactgctctt cttcaaatgc
     3781 cacattgcca tcaatcacaa tattcgggcg aaaacgagcc atttcgagtg gaatcggcga
     3841 ccattgttgc acttgctcaa gcgattttag agacatcaaa ctcaccgggt tgctatctgc
     3901 aaaactcatt gggtgatcgg caaaattcgc aacaattcgt tggctttgcg agccaagcca
     3961 acgtagttgc acagccctac caaaaatttc actcagccat tgattgaccg cttctgccgc
     4021 cactttggca ttaaaatgtg ttccccacac ttcactactc tgctcttcca caaaatcttg
     4081 gtaaagtgca acgcattttt gaccgcttgt atgggtaatc attacccctg tcgcaatcgg
     4141 gaaagccgct agacggtata attccggatc tttacgggca gtaataaatt tgccgttagg
     4201 ctcggctagc ataaattcac ggtcaaaatt taagcctttc ggttcaacaa atgcctgtga
     4261 aacttgaata gcttgagttg attttatcgg gtaaatattg agctcggtaa cttgcataga
     4321 aaatcctcca tttggaaata ggataacaat acctgcaagc ggtcgaaaag taaaaggaat
     4381 ttgcaaatcc cttgtgagaa cggtaaactt gagcaacttt tacagcaata ggtcagcaac
     4441 aatggcaaag aaacccactc aagattttga aagcacactt aaagaattag aagcaatcgt
     4501 tacccatttg gaatccggtg atttaccgct tgaagaagcc ctcaacgaat ttgaaactgc
     4561 aatcaaatta gtgcaacaag ggcaagaacg gttacaaaaa gccgagcaac gtattcaaat
     4621 cttattaaat aaaaacgata ctgccccact tagcgattac gaaagagaat aatcacaatg
     4681 agctatctat tagcaaccga tctgactcac ctgcaacaac ggattaacca ttttctcgct
     4741 gaaaaattaa aaacaacgga tagcgttggt tcgcctttag tagaagcaat ggcttatgcg
     4801 gtattgctag gcggtaaacg ggtgcgaccg tttttaatct atgccaccgg cagaatgctt
     4861 ggtgtgccgt tggaaaaatt agatcatagt gcggcggcaa tggaggctat tcacgcttac
     4921 tcgctggttc acgatgattt accggcaatg gacgatgata gattacgccg tggcaagcca
     4981 acctgccata ttgcctttga tgaagctacc gctattttag ccggtgatgc gttacaaagt
     5041 tttgcgtttg aactgctggc aaccgatccg catttgaccg accgagaaaa agttgttcaa
     5101 gttacagaat tggcaaccgc ttccggtgca aaaggaatgt gcttagggca aagtttggat
     5161 ttgattgcgg aaaataaagc ggtgagcttg gaagagcttg aattaattca tcgcaacaaa
     5221 accggggcat tgattctatc atccgtgatg atgggattaa acctttccga atattcgcaa
     5281 aatgtagcca taaaacaacc gcttgtaaac tatgccaaag cgattggctt agcctttcag
     5341 gtgcaagatg atattttaga tgtcattggc gaaacagata aaatcggcaa aatagtgggt
     5401 tcagatgaac acttaaataa aagcacatac ccgaaattgt tgggcttaga cggggcaaaa
     5461 caaaaagccg aaatgcttta tcaaaccgct ctccattcgc tggaacagtt gcctttcgat
     5521 accaccgcat taaaagagtt agctaatttt attgttaagc gtgaaaacta agaaaaaacc
     5581 tagccgaagc taggtttttt agtgattaaa cgtgaggctg agcttccggc aatgtgcctt
     5641 caatttcata taccacatcg ccgtctttaa agaaaacata gccaccgttt ttcattttgg
     5701 tccagttttc atttttggta agtggctgag tggcaataat cgtcacttta tcggtaattt
     5761 tggtatattg actaaaatca atcgacacat catcatcacg caaggctttg ccaaacggtg
     5821 ctttacggca aacgtaatgc agattagttg tacaacgggc aatcatccaa tgaccgttgg
     5881 ataaaacaaa attaaatacc ccgtgttccg caattcttga ggtgatttgc accacggcat
     5941 caaaaatctc tttttcgctt ggtttagccg gatacatctc ttttaattcc gacacaatac
     6001 ggcaaaatgc cgcttcggaa tcggttgtac caatcggctg gtagtggcac tcctcgcata
     6061 ccccaacacc ttccactgtg ccgttatggg caaacaccca gttctcgccc cataattcac
     6121 gaatgaaggg gtgggtattt tccaaattca catcaccacg cgtagcttta cgaatatgtg
     6181 caataacatt gagcgattta atttgatatt ggctgattgc ttctgccatc ggcgatgatg
     6241 ctcccgggcg gttatcacga aaaacccgaa cccctttgcc ttcaaaaaag gcaattccaa
     6301 acccatcagt atggtgatcc gtcagcccac cccgacggcg aaatccatca aaagaaaaag
     6361 taatatcggt tggcgtatta caattcattc caagtaattg acacataatt tgcttcttaa
     6421 aaccaaataa tttacaacaa aaaataattg ttacatttaa acagattgat tagaaaattc
     6481 aatgctcttt acataaaaat cttatgcttt attttcatac attatgctgt ttaatggtat
     6541 tcttttttga atagcgataa tagaaaaatc aagccggcac aaatgactac cgaaggccct
     6601 gctggtgtat ctttccaact ggataacaat aaaccgccac tgactgcaat aatactgaag
     6661 aaaatcgcaa tcaacaccat tttttcaggc gttttagcaa agcgtcttgc cgtagcagac
     6721 ggaataatca gcagtgaggt aataattaaa gcaccgacaa atttcatact taatgcgata
     6781 gttaatgcgg ttaaaatcat cagcaataaa cgtaagcgag ccacatttaa tccttcaatt
     6841 tgagcaagtt ccgggctgat ggtaatcgac aacaaccgct tccaaaacag cattaaaatc
     6901 aaacaaatta gggttgctcc gattccgata aacaccacat cagaaaaatt aattgccagt
     6961 aaatcgccga ataagtaaga catcaaatcc actcgtacat tatccaacaa actaatggta
     7021 attaccccga gagaaaggct agtatgggcg ataatcccca acacggtatc caccgaataa
     7081 ttggtttttt gctccaacca aaccagcaat aatgcaagaa gaatagtcat tccaattaca
     7141 gcaagatacg gatcgagttc taaaaaaatc cctaatgcca cgccgagcaa tgcagagtgc
     7201 gaaagtgtgt cgccgaaata cgccattttt cgccacacca caaaagcccc tagaggtgcg
     7261 gtaataaagg ctaacaaaac accggcaagc caagccggaa ataaaatatc aaacatattg
     7321 gttctcaaag gcaagtaaaa caagcggtta ttttttcgga aaaatttgca aattttttgc
     7381 tgatttagac cgcttgtcat atttatttat aacgttgaat cgggctggct tgatcctgtg
     7441 ctttcagcca cgccattttt tctttaatct gtttttccat tccccgctca cttgggaagt
     7501 agaattcggt atctttcagc tcaggcggga aataattctc cccggcggca taagcgtttg
     7561 gctcattgtg ggcatagcga tactcttcgc catagcctaa agatttcatt aattgagtgg
     7621 gagcattacg caaatgcgcc ggcacatcgt agtcttttgc ctctttagcg aggcgctttg
     7681 cttcattaaa agcttgatag accgcattgc tctttggggc aactgccaaa taaatgatcg
     7741 cttgggcaat cgctctttca ccttcataag cccccactcg ggtaaagcaa tcccaagcca
     7801 caatcgcaat ttgcattgct cgagggtcgg cattaccaat atcttcagaa gcaatcgcaa
     7861 gcagccttct tgccacataa agcggatcac caccggcggt taaaattcgg gcataccagt
     7921 ataatgctcc atcagccgat gagcctcgaa tggatttatg taacgcagaa atgagatcat
     7981 agtaacgatc accgccttta tcaaaacgag cttgtcgttc gcctaacact tcggtcagca
     8041 aacttttatt cagcactttc cctttagctg aatcttgtgc catatctacc attaattcca
     8101 aacagttcaa ggcaaaacgg gcatcaccat taacataatc agcaagcaat gccagtacat
     8161 catcttcaag taccaaagtt tcattgccta aaccacgttc ggtatcggct atcgccattt
     8221 gcaaaatttt tagaatttcg accgcttgta acggctttaa aatataaatt ctggctcggg
     8281 aaagcagtgc gttatttagc tcaaaagagg gattttcggt agtcgcacca ataaaaataa
     8341 tagtgccgtc ctcaatatgc ggtaaaaacg catcttgctg gcttttgtta aagcggtgaa
     8401 cttcatccac aaaaagcaac gttcgtctgc cggcttggcg gtttaatttg gcttgttcaa
     8461 tcacctctcg gatctctttt acaccgctgg tcacagcgga aatacgttca acttccgcat
     8521 caagatgatg ggcgataatt tcagctaggg tcgtttttcc ggtgccgggc ggtccccaaa
     8581 aaatcataga atgactatgt ccggcttcaa tcgctctgcg taacggtttg ccttcgccaa
     8641 ttaaatgaga ttgcccgaca tattcagcca agtttcgagg tcgcattttg gctgcaagcg
     8701 gtcgaaaatc ttcactaaaa tcaaaagaca aactactcat tttaacctct taacgtaacc
     8761 gcagttggcg acgaatatga cgcattaata agaaaatcca agaccaaagc acaccactga
     8821 ttacagcacc taacaattcc tgtgaattaa attcggcact gtgtaaaatg tattcaatca
     8881 cgaaaataaa gaaacggatc agcacaatat atgccattac taataggctt tgtagccata
     8941 gcgataagtt tcgcagaatc agatggtatt tcgcaacaaa ataaatcgcc accgataaca
     9001 ctaaggcgtg gatgcctaaa atcgagccaa gaatcagatc ccagacgatg ccggcaataa
     9061 aagccgtccc cacactcatt ttatcaggta atgccaatgc ccaataaatt aacaccaaaa
     9121 cgacccaagt agggcgtagc ccttggaatc ctaccggcca aggcataatc tcaagtacaa
     9181 aagcaaccac aaaaatcgca attatcacaa ggatctgaaa aatcgggttt gttctcatta
     9241 ttccgctcct tcttccgtat gatagttttg ttcattttcc gcttctggtt gtgctgccgg
     9301 attctcattt atctcatcat tctctatttg ttcttctttt gcctctagct gcacttcagt
     9361 tttcttgtta gacatctgtt ttaaacgttc aaatggattc acgctattac gtctttcttc
     9421 aacaacttca cgtacttgcg ctggcgacaa gctttgggag tagtttttct cttccgccgt
     9481 cggccaaagc agtaataagt aacgtaagcg atcaaatgag gctaacggac gagcaacaat
     9541 tctggcaaat tgacttttgg tatcattttc aaccgtttct acaatcgcca ccggatatcc
     9601 ctcagggaaa cgtccaccta agcctgaagt caccagcaca tcacctttta ccacatcaat
     9661 agaacgaggc aagttatcaa tgaccaattc attattcacc cctgtaccac tggcaatgcc
     9721 acgtacatca ttgcgtagca cttgaacagg aatagcatga gtaatatcag agagcaataa
     9781 aacacggcta gatttttccc ctacagaaat aacttgtcca acaacacctc tttcatcaat
     9841 aataggttgc ccgacaaaag caccgtctaa acgcccttga ttaatcacta cttgctgacg
     9901 ataagcatcc atctcagcag ctaatacttc agcaattttt ttatactcat cttgccgaag
     9961 cggagaactc aataacaatc ttaaacgctg attttcaacc tttagctgat caagcaataa
    10021 taaatcggca cttttttctc ttagctgctc ttttaataaa ttattctcaa gctgtaattt
    10081 attattatca ataaaattgc cacttacccc atctaaaatt gaacgggggg tattagcaaa
    10141 ataatataat ccacttaccg cggtttctaa tagattacgc gcttgaatca ttaaagagct
    10201 acgcccatcg gaaataatca gcataataga aaatatcact gcgataatca ggcgcatccc
    10261 taaagaggga gctttagcaa aaataggttt cattagagaa atatatgtga atttattggg
    10321 aatctataac gaaaattgac aatagaatca atccattgcc aacctccatt taaacagctg
    10381 ctaagagaaa tgtattaatc atcaatacta aatacatcac caccgtgcat atcgatcatt
    10441 tctaatgctt taccaccacc acgagctaca caagttaatg gatcttctgc tactacgact
    10501 tgcacgccag ttgaatcaga aagtaaacga tctaaattat gtaataatgc accacctcct
    10561 gttaacacca taccgcgctc aaaaatgtct gctgccaatt caggtgggca ttgctctaag
    10621 actgatttaa ctgcctctac aataccattt aatggttgtt caattgcttc taatacatgt
    10681 cttgagttaa gctcgaaagt acgaggagcg ccttcagcta aattgtgtcc gtgtacttcc
    10741 attgttttaa catcatcatc ggattcaatc ttagcactag caatttcttg tttaattcgc
    10801 tctgccgttg cttcaccaat agcagaacca aaatgacgac gtacataagc aataatagct
    10861 tcatctaact tatcaccacc aatacgcaca gaagttgaat acacaatgcc gtttaaagaa
    10921 agcactgcca cttcggttgt accgccacca atgtcaatta ccattgaccc cattgcttcg
    10981 tgaaccggca aacctgcacc gattgcagcc gccattggct cttcaattaa atagacttca
    11041 cgcgctcctg ctccaattgc agattcttta attgcacggc gttccacttg tgttgcacct
    11101 gctggcacgc acactaatac acgagggctt gggcgcataa agttattact atgtacttgt
    11161 ttaataaagt gttgcaacat tttttctgtt acaaaaaaat ccgcaatgac accatctttc
    11221 attggacgaa tcgccattat gctttttggt gtacggccta gcattaattt tgcatgtgag
    11281 cctaccgccg caatactttt tagcgatccc atacgatctt gacgtacagc aaccactgag
    11341 ggttcatcta gcacaatacc ttgaccttta acataaacca gtgtatttgc tgtcccgaga
    11401 tcgatagaaa gatcgtttga a
//
LOCUS       DANMGB010000073        11324 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.073, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000073 DANMGB010000000
VERSION     DANMGB010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11324
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.073"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..721)
                     /gene="rffM"
                     /locus_tag="PXG19_001452"
     CDS             complement(<1..721)
                     /gene="rffM"
                     /locus_tag="PXG19_001452"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL6066745.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            complement(711..1982)
                     /locus_tag="PXG19_001453"
     CDS             complement(711..1982)
                     /locus_tag="PXG19_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL6066746.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            complement(1975..3045)
                     /locus_tag="PXG19_001454"
     CDS             complement(1975..3045)
                     /locus_tag="PXG19_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL6066747.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            3232..4653
                     /gene="glnA"
                     /locus_tag="PXG19_001455"
     CDS             3232..4653
                     /gene="glnA"
                     /locus_tag="PXG19_001455"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL6066748.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            complement(4697..5840)
                     /gene="rffA"
                     /locus_tag="PXG19_001456"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             complement(4697..5840)
                     /gene="rffA"
                     /locus_tag="PXG19_001456"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(5827..6471)
                     /gene="rffC"
                     /locus_tag="PXG19_001457"
                     /gene_synonym="wecD"
     CDS             complement(5827..6471)
                     /gene="rffC"
                     /locus_tag="PXG19_001457"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL6066749.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            complement(6468..7715)
                     /gene="wecC"
                     /locus_tag="PXG19_001458"
     CDS             complement(6468..7715)
                     /gene="wecC"
                     /locus_tag="PXG19_001458"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6066750.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCGQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            complement(7756..8568)
                     /locus_tag="PXG19_001459"
     CDS             complement(7756..8568)
                     /locus_tag="PXG19_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
                     /protein_id="HDL6066751.1"
                     /translation="MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTI
                     PDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTE
                     AVKLKAQVAKKSPAVVAAELVEQFRFEKDMATSADNVSLIAENAEEAQKLLADFIPLV
                     NTQARDKLNADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLT
                     AYRLVKSPSVPLKSESPDPPILADDWGIKWLTAGLYAQFCGESESSTCGTLI"
     gene            complement(8579..9643)
                     /gene="wecA"
                     /locus_tag="PXG19_001460"
     CDS             complement(8579..9643)
                     /gene="wecA"
                     /locus_tag="PXG19_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL6066752.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            9785..11065
                     /gene="hemL"
                     /locus_tag="PXG19_001461"
     CDS             9785..11065
                     /gene="hemL"
                     /locus_tag="PXG19_001461"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL6066753.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
BASE COUNT         3349 a         2647 c         2308 g         3020 t
ORIGIN      
        1 agagctgatt tgtcagatag taataggcat attttagtaa atttaattgt ctttgccagc
       61 gggttggctg tttcaatagt cgataaagcc attccagccc caaattttgc caaattttag
      121 gtgctcgttt cactttaccg gcaaacacat cgtaagtccc gccaacaccc atatataagg
      181 cttgtggata ttgttgttgt aactgttgga taaaaagttc ctgttttgga gttcccattg
      241 ccacactaat aaacttcgcg ccacttgctt taatttgctc tataacgtcc tgttcttgct
      301 ccgccttaaa atagccattc tgcctaccga caatattcac cttccattgt gccaattttg
      361 cttccacctt cgttagggta tccgccgagc tgccgaccaa aaacaccggc acatttaacg
      421 ctccggctct ttgcattaag gtttcccata aatcggctcc ggcaattcgc tctattttat
      481 agtttggata tttttttcga atcgattgaa caacactgat gccgtctgca tagttgaact
      541 cggcttcatc tatcactcgg cgtaacaacg gatttttttc cgacagaatc actttctcag
      601 cattaattgc cactaatctt ccgaactgaa tccgcttttc attcatcagc caatttgcaa
      661 aaatttcccg atttttgacc gcttgtaacg caatgccccg aatgatcact ttatcgaaca
      721 ttattatttt tccccattga aaggattttc gccagcaaat agcaagccat aaatatcagc
      781 gtgaaaaagc aaaaacggga aacaaatgca tcgattccct ctcgcactaa tacgatcaaa
      841 ttgaataaat tgccgaagca gtaggcttgc aacaaggcgg aattgcacgc tttggcgtaa
      901 gcgaataggt tatctaaggc tttaatcatg gcagctacta tccccattcc caacgccata
      961 acgctaaatc cgcccataat atagaaagag ccgagtaagg taggcgaaat agctaaccct
     1021 gattggttgc ctaaaatcac tttggtaaaa taattcgccg tattccagac gatctcaggg
     1081 cgttcttgcc ataaagattg tgggatatat acatagaaat cccgcacaat cggcattaaa
     1141 ccttgatatt ccacctcatt agaaaataca cgagccaaat tttcccaagg cgaaaaagta
     1201 tctcggctta aatataagaa ggtgtaaatc atctcgctac cggaaagggt aagtttgtaa
     1261 cgggctagag cgaggaagaa catcgccacc acgccgatta ggcttacggc aatcaccttt
     1321 gataacgaca gatagccttg ctgcaatcca atcaataaga aaaagccaac cgctagtgct
     1381 aaatttgccc atgtgccgcc cactgccaca tagcttaata tgccgaatgc cccaccaaca
     1441 atcagtaacg cccaccacgc tgttttattc ttatatagga agcaaaaaat taacaacgcc
     1501 ggcaataaaa agtagaaaaa tcgttttaat gccgaaagta tgaccctatc tttggcaaac
     1561 agttggctat atttttcgag tttgaaaagc agaaaaccgt ttaaataaag gaaatatagc
     1621 agggcaacaa ctgccacagc ggcaaggata caagcggtcg tttttgcctg aaaatttgca
     1681 acaagagcag ttggttgcga cacagcactc cacaagcgtg aatagacaac gtaataaatc
     1741 aaatagccaa cacctgctgc cgtaaaaact tgccattgtg tttttagctc cggcagcggg
     1801 taatcaaagc caaatgccat tattaacgaa aacggaaaac cggcgtaaaa agtaacaaaa
     1861 tagagcaaac taaacagtaa atggaaagaa atccccgatt tctgataaag ttgataaagt
     1921 aagctgaaaa atagcccgac agaaacaaga taaaatccgc caagtggtat taaattattc
     1981 attttgcatt aattcgatta atcgctgttg ccatagttta gtgtagcccg gagcaaaaaa
     2041 cgcaatgcgg tttttatcta tgctctttag ttgttgtttg gttgtttgaa tctgtgaagc
     2101 agtcagattt tccgccaaca aataaggcac tttttctgcc tgtagatcca acccaaacgg
     2161 attggctgaa tgtaacacac aaggtacatt atggctaatc aaaaggctta tcgtgccaat
     2221 gccttgctgg cgtttaaaat tgaaatagcc gagatcacaa tggctcaata acgtaacata
     2281 ctcttcaaag ctcagcttct tccgcaaaat ttgcaaattt tccgccaaaa ataaccgctt
     2341 gctataggct tccacctgcc gaatatagct ttcattattt tccgggtagc ccattggtat
     2401 gataatccgc acattgttcc ctagtcgttg atgaatctcg cttaaggctt gaataagctc
     2461 attcgctgga tcgcctgaat tgccgagcaa tatcgtcaag cgatcatttt gtgtggggct
     2521 aatttttatt tgatcaccta atttcgtggg gaaatagatt aaatgatcct gttctgatct
     2581 tgtacgcata tttcgccaca aatgatccag atcgcctctt gttgcccaaa cctgtaagat
     2641 tttttgttgg gcaacacgcc gaaacgggta aaacagctta aatttccacg aagttgccat
     2701 ttcatataaa tccgcccccc aaatatgcca aatcaggttg gtggtcggca atctgcctaa
     2761 ggctatcgcc agccaaatcc aagggttaaa ctgcccgtgt aacagaaaac aagcggtcgg
     2821 attttgccgt ttttttgcaa ttaaggcgtt cgcaatcgct ttttgtgaag agaactgctt
     2881 aatccgcaaa tgaggaaaag cagtttgcag tgaaggcttg cctaccacat aaaaaaaatg
     2941 ttcggagtct ggcaataacg gcaaaagctc ttgctgaaaa aaggttaaaa cctgttggtt
     3001 atgatgctca atctcggagc ctagaatatg ataaatcggc aacattacac gcttttctct
     3061 ccccaccata caaacaatat gcaagcggta agattttagc aaaaatttgc aacattactg
     3121 caacttcttt tagctttgaa acactaaaaa acatcacaca cttggttaaa aaatgctatg
     3181 ataaccgagc ttttttatta ttcatttatc ccaacgagga cttattttac tatgtcaaac
     3241 gcaatcgcta atgtatctaa actgattcaa gacaatgata ttaaatttgt cttattaaaa
     3301 tttactgata ttaaaggtaa agaacacggg gtttcgctcc ctgtcagctt agttgccaac
     3361 gatttggaag acttattcga ggaaggcaaa atgttcgacg gttcgtccgt agaaggttgg
     3421 aaggcaatta acaaagcaga tatgttgtta atgccgattg ctgaaaccgc tgtagttgac
     3481 cctttcgccc gtattcctac cctttctatt cgttgttcca tttacgaccc aaacacaatg
     3541 cagtcttatg accgtgaccc tcgctctatt gcaacccgtg ccgaaaacta cttgaaatcc
     3601 accggtatcg ccgatagcgt aatgtttgga cctgagcctg aatttttctt attcgatgat
     3661 gtgcgtttta gcaccgaaat gaacaatgtg tcataccgaa ttgacgatgt agaagcggct
     3721 tggaatacca accgtaaatt tgaagaaggc aacaaagcct atcgtccgtt gaaaaaaggc
     3781 ggctactgtg cggttgcacc gattgatacc gcccacgata ttcgctccga aatgtgttta
     3841 ttgatggaag agatgggttt agtgattgaa gctcaccacc acgaagttgc gacagccgga
     3901 caaaatgaga tcgcaacccg attcaacagc ctgaccttaa aagccgatga aacccaaatc
     3961 tataaataca tcgtgcaaaa tgttgccgta gaacacggaa aaaccgcttg ctttatgcca
     4021 aaaccgttcg ccggcgacaa cggctcggga atgcactgta atatgtcatt aagcaaagac
     4081 ggcaaaaatg tgtttatggg cgataaatac gccggcttat ctgaaactgc cctctactat
     4141 attggcggta tcattaaaca cgcaaaagca ttaaatgcct ttactaaccc aaccacgaac
     4201 tcttataaac gtttagtgcc gggttttgaa gcaccggtgt tattggcata ttctgcaagt
     4261 aaccgctctg cctctatccg tattccggct gtgaccagtc cgaaagcgac ccgtgtagaa
     4321 gcacgcttcc cggatccaat ggcaaaccca tacctttgct ttgccgccct gttaatggct
     4381 ggcttagacg gtgtgatcaa caaaatccac ccgggcgatg caatggataa aaacttatac
     4441 gatttaccgc cggaagagtt aaaagatatt ccaacggttg cctcgtcttt agaatccgct
     4501 cttgacgcat taagcaatga ttttgaattc ttaacacaag gtggcgtgtt cacgaaagac
     4561 tttattgatg cttatatcgg tattcgtcgc aaagaggtgg aacgtgtaaa tatgactccg
     4621 cacccggtag aatttgaact ttactattca tagtaacaac atatagcaaa aaacggctga
     4681 aacactcagc cgttttttat tgattgaaga aagcaagcac tgcttgaata acacgctctt
     4741 gctcctgctt actcaaatta taaaacagtg gcaatcttac caaccgttcg ctttctaagg
     4801 tagtaaagcg atcatcacct gctaatcgac ctaatttctg ccctgccgga ctgctgtgca
     4861 acggcacata atgaaacacg gttaagatat tctgtgcctt cataaaatca ataaaagcag
     4921 ttctctgctt caagtcactt agctttaagt agaacaaatg cccgttatgg cgacaatatt
     4981 cgccaatgcg aggaagctcg cacttagctg tttgggcaag tggcaaaaag gcttgatagt
     5041 aattgtgcca aagggttaaa cgctgttggt tgattttatc tgcctctata agctgagcat
     5101 acaaataagc cgcttgaatt tccgacatta aaaaacttga accaatatcc tgccagcgat
     5161 atttatctac ctcaccacga aaaaattggc tacggttagt gcctttctct ctgatgattt
     5221 ccgctttttc cagcaaatgc ctcattaatc acgatcgccc caccttcacc gccagcggta
     5281 tagtttttgg tttcgtgaaa actatagcaa ccaatatgcc cgatggaacc taacgcccta
     5341 cctttataaa acgaattgac tgcctgtgcc gcatcttcta ccacataaag cccgtatttt
     5401 tcggctgttg ccattattga atccatatca caagcaatgc cggcataatg caccggcaca
     5461 atcactttgg tttttggggt aatggcttgc tcaattttgc gttcatcaat attcattgta
     5521 tccggacgaa tatccacaaa cacaatcttt gccccacgca acgcaaacgc atttgcagta
     5581 gagacaaaag tatagctcgg cataatcact tcatcgtccg gctgaatatc cagcagtatt
     5641 gccgccatct ctaacgcagc cgtgcaagaa ggggtaagca acactttgct acgggccagg
     5701 ttttcaagcc actgctcaca taagcgggtg aatttaccac cgcccgaaag ctgccctgtt
     5761 gccatcgcct gttctatata ggcttgctcc gcccccacaa ccgggggttg attaaacgga
     5821 ataaaatcag gattgttcat catcgtattt ttccaaagca gggtaaaacc aataatacac
     5881 cgccttaatg cttgcaccaa acgcttgata aaaacgaatc gctttctggt tactcagctg
     5941 agtggtaatc atcagttttt tcgcattttg ctgtttcgcc cacgctatcg cagcatttaa
     6001 caattccgag ccaatacctt gttgtcggca atcaggcttt accgccaata atccgatttt
     6061 cgcttgctgt tgggcaagta agcgaaccgt taccgcccct tgaatttgcc cgtcagcatt
     6121 gcattgaacc aagccaatat catcaaactt gccttttacc gcattttcaa tccaagtccg
     6181 gtaaaagcgt tgattctctt cccttgaaaa atagggcgaa cgaaaccggc tatcgggaaa
     6241 tgccgaacca aacaataagt tcaagtcggg caaatctgcc atatccgccg ggcgacaagc
     6301 ggtcatattt tcagaaaatg ttgcaagtgc cagctcaaat tccaattctc cctccacaag
     6361 tacaaaacct tgtttttgca acctagcgat ttgcctaaaa tcatcagccg ctacttttac
     6421 ttgcacaatt tctctaccga aaaaatcgga cagccattga tccggcttca tcttacccac
     6481 actcctcgac aatcaataat atgccgttgc ctgatctgtt cccttgaaat ttgcttaaat
     6541 gaagtgtgat ccactaacaa gactaaaatg tctgcctgcg aaagtgcggt gttgagatcg
     6601 actaaggtga ttttttcgcc agccagctgt tgaatatttg gctcaaccgc caacaggcta
     6661 ccctgatgcc aagcggcaag ttgccgggta atcgctaatg ccgggctttc ccgcaaatca
     6721 tcaatattcg gcttgaaagc tagccctaaa caagcgatgg ttagctcact tggcttacaa
     6781 tcttgctcca tcgcacagtc tgcgaccgat gttttcactt gctcgattac ccattgcggt
     6841 ttgctgtcat tcacttctcg tgccgtgcga ataaggcgag cctgttgggg cgatgtggaa
     6901 acgataaacc acgggtcaac cgccaaacaa tgtccgccca cccctgctcc gggctggaga
     6961 atatttactc tcgggtgaag atttgccaat tcaattagct cccacacatt gatcttcaac
     7021 gcatcacaaa tcattgaaat ttcattggca aaggcaatgt tcacatcacg aaagctgttt
     7081 tccaccaact tgcacatctc cgctgtgcga gctgtggtgg tgacacaacg tccttttgca
     7141 aaaatttggt ataaatcgac cgcttgttga ccgcattgtt cgcttaatcc gccgataatg
     7201 cggtcatttt caaccaattc cgtcattata ttacccggca aaacacgttc agggcagtag
     7261 gcaatagaca catcggctgg aaaggctaaa tcagggcgag cttggcttag ccattcggct
     7321 aaattttctg ttgtaccgac aggcgaagtg gactccagca ccaccaaatt ccctttacgc
     7381 aaacaagggg caatcatagc ggcggcattt tgaatataag tgagatcggg ctgcttcccg
     7441 caaagtgggg ttggcacggc gatgataaaa gcatcggccg gttgcggttt ggcagttgca
     7501 aaaaaattac cttttttgac cgcttgtgtg aaggcagttt gtaaatccgg ctcgataata
     7561 tgaatgttgc cttgattaag gcttgccacc acttgcggat taatatccac cccaattact
     7621 tgcttgccgg cattggcaaa aacgactgag gtcggcaagc cgatatagcc taaccccaga
     7681 atacaaatag tgttaaattc agttttactc atcatcagtt acaaagagaa atggcacact
     7741 aaattgtgtg ccattttaga ttaaagttcc gcaggttgag ctttcgcttt caccgcaaaa
     7801 ctgagcataa agcccagcag taagccactt aatgccccaa tcatcagcca aaataggcgg
     7861 atcaggcgat tctgatttaa gtggaacgct aggcgattta accaagcgat aagctgtaag
     7921 ttggttgtct aacggctgaa cagaacgcat catttgcagt ttagctgccc aatcttgtga
     7981 gccttgctta ccgttaatat tcaactccga agcagtttta atttgctgga acaagacttt
     8041 ccatttcgca attaaatcgg cgtttaattt atctcgagct tgggtgttta ccaacggaat
     8101 aaaatcggct aataattttt gagcctcttc cgcattttct gcaattaagc tgacattatc
     8161 tgccgaagtt gccatatctt tttcaaaacg gaattgttca actaattcag ccgccaccac
     8221 cgccggtgat ttctttgcaa cctgagcttt taatttcacc gcttctgttt gtagcaaata
     8281 ggcttgaagc aagtcggcgg acgtgaggtt gcgtttaaat tccgcataaa cctgctcact
     8341 tgcctgttgc tgtgccgttt ggctattcgc ttcttggcta ttactattca aaaaatggta
     8401 ggtggaaagt aacgagtaat aattacctaa atcgggaata gtcggttgct caaattgagc
     8461 ggtcactttc catttttcag gttgagtata actcagccca taaccggcac ctgccccgat
     8521 agcagcaaat aaaattagca ctaaaagtcg ataaaataag gttttcacaa catatccttt
     8581 aaagttgttt gctacgtttt gcacggcgtt ttagacggcg aacaaaacgg gttacacgcc
     8641 aagcgtgggt aatggaatag gcgtatagga aaaacagccc gataaacatt agcatcatca
     8701 cccactgatt ccaataatac acctcgccta ataccccaat ggtggaacaa aatcccgccc
     8761 agagggtaat caccaataat gcttggcgag aggtaagccc tgctcgcatc attaaatggt
     8821 gtaggtgcaa gcggtctggt ttgaacggac ttttaccttt tttcaaacgg cggataatca
     8881 ccgcaaccat atcaattaac ggcacggcaa tcagccacaa accggtaatc gggctaattg
     8941 gcgagccttg cccttgggtg cttaacagca gaatccaaat aatggtaaag ccgatcagca
     9001 tactgcctga gtcgcccata aacactttcc atttcgcccc aaacaggctc aaattgaaca
     9061 ttgcatacgg caacaacaca aagataaggg caaagcacca atagcccaaa cttggttcgc
     9121 cattaatgaa cattaaagtg ccaagaccgg caaaactcac gctggaaagc cctgctaata
     9181 agccatcaat cccatctacc atattaaacg cattaataac gccaatggtg ataaacacgg
     9241 taaagacaat gccgagccaa cctaattcta tactaaaggg ggcaataatt tgccctaaac
     9301 tgctgagcga caagccactg taaatcatcg ccccagctag tgctgcttga atcccggcac
     9361 gcagtaatgg gctgatgtca aatcggtcat ctaacacgcc gataatcagc aaaatagtta
     9421 ccgctgtcag atacagttcc ggcagccgca tatcttgcca ctgcataaaa tagaaagtga
     9481 gattgccgat aaataatgca ataccaccga ttaacggaat caacccctga tggcgtttac
     9541 ggaagttggg cttatctacc aaaccaacaa attccgccac cggacgcatc acaatcaggg
     9601 ctaaaaaaga aacaataaat acggttaaaa aagtaagcca catacaggga ttgcctcaaa
     9661 aaatgagtca taaaatagga atgcagaata gcataaggca acaaaatcgt aaatttttta
     9721 gcgaaaacaa gggcttttca gtacaataac aggcaaattt ttacatcaaa agaaaggaat
     9781 tgatatgtct atttcagaac aactgtttga acaagcccaa aaagtgattc cgggcggtgt
     9841 gaactcccct gtgcgtgcat ttaaaggcgt gggcggcaca ccggttttta ttgaaaaagc
     9901 cgaaggtgct tatattaccg acagcgacgg caaacaatat atcgactatg tcggctcttg
     9961 ggggccaatg gtactcgggc ataaccaccc ggcgattatt gatgcggtgc taaaagccgt
    10021 gccaaaaggc ttaagtttcg gtgccccaac ggcagcagaa atcacacttg ccgaattagt
    10081 gtgcaaatta gtaccttcta ttgaaatggt gagaatggtg agcagcggaa cagaggcaac
    10141 aatgtctgcc attcgtttgg ctcgtggcta taccaaccga gataaaatca tcaaatttga
    10201 aggctgctac cacgggcatt ccgattctct gttagtaaaa gccggttcag gtgctttaac
    10261 cctcggtcag ccaagcggcc cgggcgtacc cgctgatttc gccaagcata cgcttacttg
    10321 cacctataat gatttagatt cagtaaaagc agcatttgag caatacccaa atgagatcgc
    10381 ttgtttaatt gttgagcctg ttgccggcaa tatgaactgc attccgccac aagaaggctt
    10441 tttacaaggc ttacgtgatc tttgcacaca atatggtgcg gtatttatta ttgatgaagt
    10501 aatgaccggc ttccgtgtcg cactcggtgg ggctcaatct tactatgggg taacaccgga
    10561 tttaaccaca ctcggcaaaa ttatcggcgg cggaatgccg gtgggggcat ttggtggtaa
    10621 aaaagagatt atggaataca tcgctccaac tggcccggtt taccaagccg gcacgctctc
    10681 aggcaacccg attgcaatgg ctgcaggttt ggcatgctta actgaattat caaaagcagg
    10741 aaatgaaacc attttagcgg aaaaaaccaa aaccctcgct gaaggcttta aagctcttgc
    10801 agataagcac aatgtgccat taacggtaca atatgtcggc ggaatgttcg gcttattctt
    10861 caccgaacaa aaagcagtaa acaacttcca agaagtaatg aaatgtgatg ccgccaaatt
    10921 caaccgtttc ttccacttaa tgctggaaca aggcgtgtat ttagccccat cggcattcga
    10981 ggcagggttt atgtctttag ctcacagtga tgaagatatt gctcgtacgc tagaggctgc
    11041 ggataaggca tttgctcagc tttagaagaa tgacaagcgg ttgggtttac tcaataattt
    11101 gcaagttttt gagggaattt gaccgcttgt agtgcaaatt tctcttacga tagcaattat
    11161 gatggtgttc gtctctgacg agtgcttata caaactttca ttatgcttaa acaagcaccc
    11221 gtctggagac gggcgctatc gagggaatag gattgataaa gcaatatatg ggcttccaac
    11281 acttgcaggc aaggacaagt cttacacttt ctaatattac aaat
//
LOCUS       DANMGB010000074        11284 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.074, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000074 DANMGB010000000
VERSION     DANMGB010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11284
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.074"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            250..978
                     /gene="ttrB"
                     /locus_tag="PXG19_001462"
     CDS             250..978
                     /gene="ttrB"
                     /locus_tag="PXG19_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL6066754.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            980..2011
                     /gene="nrfD"
                     /locus_tag="PXG19_001463"
     CDS             980..2011
                     /gene="nrfD"
                     /locus_tag="PXG19_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL6066755.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2001..5096
                     /gene="ttrA"
                     /locus_tag="PXG19_001464"
     CDS             2001..5096
                     /gene="ttrA"
                     /locus_tag="PXG19_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL6066756.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5237..6082
                     /locus_tag="PXG19_001465"
     CDS             5237..6082
                     /locus_tag="PXG19_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6066757.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6195..7592)
                     /locus_tag="PXG19_001466"
     CDS             complement(6195..7592)
                     /locus_tag="PXG19_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL6066758.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7682..8305)
                     /gene="gmk"
                     /locus_tag="PXG19_001467"
     CDS             complement(7682..8305)
                     /gene="gmk"
                     /locus_tag="PXG19_001467"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6066759.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8418..8891)
                     /gene="gpt"
                     /locus_tag="PXG19_001468"
     CDS             complement(8418..8891)
                     /gene="gpt"
                     /locus_tag="PXG19_001468"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6066760.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9037..10446)
                     /locus_tag="PXG19_001469"
     CDS             complement(9037..10446)
                     /locus_tag="PXG19_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6066761.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10642..>11284)
                     /locus_tag="PXG19_001470"
     CDS             complement(10642..>11284)
                     /locus_tag="PXG19_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6066762.1"
                     /translation="AKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIE
                     GKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTA
                     TYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISST
                     VHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
BASE COUNT         3037 a         2639 c         2586 g         3022 t
ORIGIN      
        1 aaattctagg agattagcga tacctagtac cccgagtgat attaatgcgt ataaaaactt
       61 tagatctaaa ctaaaccatc ttattgcttt ttaattagta tcaatgccct attatctact
      121 tgtatagggc atttcccttc atccttgacc caaatcaact ttccccttga tatgtggaaa
      181 accacaatac cttgccgttc cctctccgcc ttagaatacc tttgttattt ttaaatttgt
      241 gggggaaata tggatttaag caaacgttcc tttttgaaag agctttccgc cttgacggtg
      301 ggggcgagtt ttgtgccgtt gcaatcggcc caggcgttta tgccggcttg gcgtgagggc
      361 gatgagaaca aacgctatgc gatgctgatt gatttgcgta aatgtatcgg ctgtcaagcg
      421 tgtaccgtga gctgttcggt ggagaacgcc acgccgttgc acagtttccg caccacggtg
      481 cgtcaatatg aaatcaccaa cggcacgcag gtggtgaaca atgtggtgtt gcctcgtttg
      541 tgtaaccatt gcgatcaacc gccgtgtgtg ccggtctgcc cggtgcaggc aacctttcaa
      601 cgtaaagacg gtgtggtggt gattaacaat gagcagtgca tcggctgtgg ttactgcgtg
      661 caagcctgcc cgtatgatgc ccgttttatc aatgaagaga ccaaaaccgc cgataaatgc
      721 accttctgca ctcaccgttt ggaggtaggt ctgctgccgg cgtgcgtgga aagttgcgtg
      781 ggcggggcaa gggtgattgg cgatttgaac gacccgaaaa gtcaaatttc ccaactttat
      841 caagcccaca aagatgattt gaaagtcctg aaaccggagg ccggcaccgt gccacacgtt
      901 ttctatgtgg ggctagacga tgatgccttt gtgagcaaaa ttgacgggca accaatgctc
      961 tggacggggg aggcgtaaaa tgattcgtga agtattagtg gaaccgcaac atatcgtctg
     1021 gttgccgtgg attgtgcatt atttcttctt cgtaggcgtg gcggcaacgg cagtgtttac
     1081 cgccgtgctg tttgcaaaaa aatcactgaa accgaccgct tgcgagctgg cggcggtgac
     1141 ggtagccttg attggctcga ttgtcgcccc tgtggcattg actgccgacc tgcaccaacc
     1201 gagccgtatt ctgcatttct acaccgattt tgcgtggcga tctccaatgg cgtggggagc
     1261 gattatcctg cccctgttca gcgtggcggt agcgggttat tttgtgctgg cattggctca
     1321 ccatacccgg ccgaacctgc cgaaatggtt agcgtggcta cagttgccga tactgcaaaa
     1381 tcaaggcttg ctttgggcat tccgcctgtt tgccacactc accgctatcg gcattatcgg
     1441 ctacaccgtg cttgaaacct accaaaccgg cacaagaacc ttatggcaca gtgcgtggct
     1501 gctgccgatt atgctctttt ctgcgtgggc ggtggcattg gggcttaccc aagcggtctg
     1561 caaaatgctg ttccacaccc aaaccaacac ggggctatgg acaaaactct gcctgatttt
     1621 aaccgcactt tcgcttgtcg gactagcatt cagtagtcca caagccacac aagattttgc
     1681 ccagctcttc aatggctcaa tcaccgctta ccttgtcggc attttctggc taattgccct
     1741 catttgcaat ttttctgcca aaaaccaccg cttgcaatgg ctcggcgtgc ttgccctcat
     1801 cgctttcggc tggctactcc gctgggtact ggtgatccaa gtccaaacca ttgccaaaac
     1861 caatgccttg caaaatccat atcatttcga ttggacagcc gtcgatggtg gtttggggat
     1921 tgtctcgatt tttgggctaa cggtgctagt aagtatcgtg gtatggcaac tgattttaat
     1981 aatttgtggg ggaagaaaag gtgaacaata aacgcagaaa tctgttgaaa ggcgggctgg
     2041 cacttggtgg ggcggcggcg tttggggccg ggtattcgcc gaaggtgtcg gagattgcca
     2101 aaggggtgat gcacggcaca tcgggcgaga aaacccgtga tgcaattcac ggtaattcgc
     2161 tcacgccgga gtatcaggta aaagacggca aactgctcag caatcctgag caaattgtgt
     2221 gcaatacaca gtgtatgggc tgttggacgc agtgtggcat tcgggcgagg gtggatttga
     2281 acaccaacca agtgattcgc atttcgggca atccgtatca cccgctttcc tccgacaaaa
     2341 ccctgccgtt cggtatgccg attgccaagg cggaactgtt gctggcgggc gaaagtggca
     2401 ttgaaaatcg ctccaccgcc tgtgctagag gggcggcgtt cttggagggg gtgaacagcc
     2461 cgtatcggat tacccaaccg ttgaaacggg tcggaaaacg gggcgaaggc aagtggcaga
     2521 ccatcagctt tgagcagttg gtggaggaaa tcatcaatgg tggcaaccta tttggtgaag
     2581 gcgaagtgga gggcttgaag acgatccgca atctggtcga tccgattaac ccgaaacagc
     2641 ctgatttggg aatgaaagca aaccagcttt tagttacttt tgccggcccc gaaggtcgtc
     2701 agccgatttt gcaacgcttt gcccaaaaga gcttcggcac gatcaacttt tccaaccacg
     2761 gggcttattg tggcgctgcg taccgtgccg gttcgggtgc ctttatgaaa gattttgaca
     2821 accaacaaca cgccaagccg gactgggatc acgctgaatt tattctgttt atcggcacgt
     2881 ctccggcaca gtcgggcaat ccgtttaagc gtcaggctcg ccagcttgcc aaacgccgcc
     2941 ctgatgacaa tttcagctat gtggtggttt cccctcgttt ggagatgacc tcctccctcg
     3001 ccacccaaaa caaccattgg gtgccgatta agcccgaggg cgatttggcg ttggtaatgg
     3061 gaatgttgcg ttggattatc gaaaacgagc gtttcaatgc tgactacctc tcccgcccaa
     3121 gtctggcagc gatggaaaat gccggccacg tcagctatgc caatgcgtca catctgatta
     3181 tttgcgaacc gaaccacccg aaattcgggc aggcgttgcg gattagcgat ctgcaagatg
     3241 tgcaactcga ccccgaagag aaagtggaag aaaacctgat tgtggtaaaa gatcaggcaa
     3301 gcggcgaact catttcagca aaagattgct tacaagcggt catttttgtc gaacaaattg
     3361 caaaactgct tgatggctcg gaagtgttgg tgaaatcctc aatgcagttg ctgaaagagg
     3421 cgacacaaga gaaaaccctt gccgaatata gcgacatttg tggcgtgccg gtgcaaacca
     3481 ttgaaaactt agcgaaaaaa ttcacttcgc acggtcataa agccaatgcc atcactcacg
     3541 gcggcacgat gcacagcacc ggtttttata ccagttgggc gattttgttg ctgaatgcaa
     3601 tggtcggtaa cctcaacaaa aaaggcggaa tggcagtagc cgcaggcaaa ttcaaagatt
     3661 tcggggacgg gcctcgctac aatttagcga acttcccgaa tgaagtgaag ccaaaaggca
     3721 cgaaccttgc ccgcagtaaa aaggcgtacc aaaattcaag cgaatttaag cagaaagtga
     3781 cgaagggcga aaatccgtat ccggcacaag gggcgtggta tccgttcacc ggcgggcaaa
     3841 ctaccgagat gtttacctca atggtgcagg gctatccata ctttgcgaaa gcgtggatca
     3901 accatatggc gaaccccgtt tacggcttaa ccgctatgaa cccgattgcg ttggagaaat
     3961 taaaagatcc gaaaattcta ccgctctttg tctctattga tgcttttatg aacgaaacca
     4021 ctgcactgac ggactacatc gtgccggaca cccacaactt tgagagctgg ggcttttcaa
     4081 cggcgtgggg cggtgtgcct caacgcacca gcaccgcacg ccacccgatt gtgccgtcca
     4141 aaaacgccaa aactgccgaa ggcgacacca tctgtatgga gaatttcgtg attgcggtgg
     4201 cgaaaaaaat gggcttgccg ggctttggcg aaaatgcgat tgccgattta gaaggcaacc
     4261 gctatccgct ccaccgtacc gaagattact tcctacgggc ggcagcgaac attgcctttg
     4321 ccggtgagaa acctgcaccg gacgccagcg agcaagatct gctgctcacc ggcgtgcaac
     4381 ggattatgcc gaaaattgaa caaacgctaa aagccgaaga gcgattaaaa gtggcgaatg
     4441 tgtattgcaa aggcggacgt tttgccccac acgaaagtgc gtggaaagag gagaatatgg
     4501 agttccagtg gaaaaactgc ctgcaaattt ggaacgaaaa cgtgtataaa gcccagcacc
     4561 acagcaacgg tgaacactat tggggctgcc ctcgttatat gtcgccacgt tttgcggacg
     4621 gctccacgct ggagcagcac tatccgcagt cggaatgggg ctttaaactg atttcgttta
     4681 aatcgaacat tatgagcagt attaccgccc cactgttgcg tctgctctcg atcaagcctg
     4741 agggcttagt ggcgatgaac cgtttagatg cggaagaaaa aggcattaaa cacggcgatg
     4801 tggtgaaact cagcacccca accgccggct tgacggtgca gattgtggtg ttggacggta
     4861 tcgcccgagg cacaatcggc atcgaacacg gctacggtca taaacagatt ggggcaagtt
     4921 cctacaccat tgacggcgtg gaaattccag ccaacccgat gatcgccaaa gggattaacc
     4981 tcaacgacct cggcattatc gaccacacca aagcggtcaa atccccgtgg gtagattggg
     5041 tctgtggctc agcggtgaga aatggcattc cggcgaaggt agagaaatta gcctagccga
     5101 acaagcggtt ggttttgcag aaaaatgtgc aaaatcgacc gcttttattg atgtaaggga
     5161 cactgttcct tatgcaaacc agcattgcag agcgtaaaaa atcatactct gcattttaat
     5221 ttattttgga gaacctatga cttttgtcaa aaaaacagca ctgagcctga ttgcaacggc
     5281 acttttcgct acatcaagtt ttgccgctga gcagagccaa taccaacata ttcgtaatgc
     5341 aacggcgaaa attgaatatg ccggcaagac gtttttggtt gatccgtatt tagcggagaa
     5401 agatcgctac ttaccgccga atgcgaaaaa acgtaatccg accttggata tgactgtgag
     5461 cattgatgaa gtgttaaatg gcgtggatgc ggtgatcgta actcacactc accacgctca
     5521 ctgggacgat gtagcacaac aacgtgtgcc gaaaaatctg ccgatttttg tgcagaatgc
     5581 cggtgatgcc cgtttaatcc gttcacaagg ctttaccgat gtgcgtgtgg tcggcaaaga
     5641 taccccgttt gaaggcgtaa ccttaacccg aactcgtggc cagcacggca ccgatgcgat
     5701 gtatgcgaac ccgaaaattg ccgaaatggt cggcgatgcg atggacgtag tgatgaaagc
     5761 ggaaggcaaa ccgaccgtct atttggtggg agataccatt tggaaccacg aaatcgaaca
     5821 ttcgttcaac acttacaaac cagactttgt ggtgctgaat gccggctgtg ccaaactacc
     5881 aaactttgaa ggcagcccga ttatgtgtac cgaagatgtt tccaaagcac acaaaatcgc
     5941 tccacaagcg aaaatcttaa ctgtgcatat ggacgccctg ccacaaacct caatcagcag
     6001 tgatcagatg cgtgattatg tacaaaaaga gggattaaat cgtgtaactg tgccgaaaaa
     6061 cggtgatgtg attaagttct agtagctaaa ctaacattac caaaatggtt taagtagcaa
     6121 taaatagcga agcgggttaa gccatcaagc cttaacccac ttttaccaac catagtatat
     6181 agttttagat ataattatct tctgtattta cctgccattg cttggtaaac cgcattctcg
     6241 ttggtcaaaa tcgcatattt tgcatttaaa atcgccaact gagaattaag ctcggtattc
     6301 agtgcggtaa tccactcacg gaactccgac accccttgtt cataacggtt tttatagtat
     6361 gaactgatac gtttattttt cgcattggta tcttgaagga tttttaacga gcttctcgac
     6421 tgcgtataac tgtaataata acggtcaatt tcatttaagg ctgaggtaat tttttgctca
     6481 tagtttaaac gggcagtcac ataatccgtt tcagaaattt ttacgttatt tttaacccga
     6541 ttccaatcta agaacggtaa atccaattta attaagccgt tacccacagg gttatctgcc
     6601 acattgccga tattggttgc actaccggta atagaaccac cgatggttaa ggttgggaac
     6661 cagcttttct cggttgcggt taaggtttta aatgcacttt gtaagcgttg taacgagcct
     6721 actacatcag ggcgattagc aatggctgac actggcacat ttaaatctac cccttgcaat
     6781 ttcacgctca taatattcgg gtaacgaatg ttaagcggag tatttggctg aacatttaac
     6841 aaattgcgta atgtttgctc ggcaattttt tggttggttt tcagatcaat tacactattt
     6901 ctggcgttta agaccgcttg ttgagcctga tcaaccgcta aactatcaat cgcaccggca
     6961 ttcattttgt tagttaaaat acggctgatt tgctcataat ggcgaatgct ctcttcggta
     7021 atacgaatcg catcacgata gtaagctaac tggtagtaag tagtcacaac cgcattaata
     7081 atagataaac gggtagcttt taagtcttca atggtggctt tatgcgtcca ttctgccgca
     7141 ctggcggtat cggctaaacg tcgccataaa tccacagtat aacttaaatt aaatgcagct
     7201 tgagctgcgg ttgttgaaac accggtcgaa acattatttg aagaagccga acctaaacct
     7261 ttagccgcag aaacagaacc tgaaccacta aaggttggca ctaaatttgc ccctactaaa
     7321 ttagcgttat acaaggcttt attgactgca attccgcttt tggctaaatc aaggttattt
     7381 ttgatggcta aatcaaccac acggtttaat tccgcatccg tatagccttg ccaccattgc
     7441 tcgttaattt gatattgttt ggtaatttca tcatagcttt gataggtttg ctgtgcttgt
     7501 tgcaaagtcc cgtcattgct catattccct gtggtacaag ccgttacggt tagagccaac
     7561 gccacagaaa atgctaattt tgaaagtttc attacatttc cttttgaaaa taaagagggg
     7621 aaaatgggcg tattctaccc aaaaacagat tgcctttcca gttaaatgaa caactgttca
     7681 tttaattatt taacaaatca gtaatcaaat gctgatgacg aatttgttgc gaacctaagc
     7741 tcaaacgctc ggcaattaaa atcgctttta gctctgccaa tgcctgttgg aaatcatcat
     7801 taataatcac ataatcgaac tcattgtaat ggttcatttc cgacaccgcc tctgccatac
     7861 gtttggcaat ggtttcagcg gaatcttgcc cacgcccgat taaacgtttt tccaattctg
     7921 tttttgacgg tggcaaaata aaaacggttt tcacattcgg cactttttcc cgaatttgtc
     7981 tagccccttg ccagtcaata tccaaaaaga catcaatgcc ctgctctagg ctacgttcaa
     8041 tcatcggcaa tgatgtgccg taataattgc caaacacctc cgcccattct aaaaaatacc
     8101 cttgctcaat cagctgctta aactcatcgt gcgaagtgaa ataataatgc acgccgtcct
     8161 gttctgccgg acgaggctga cgggtagtgt gtgaaatcga aagctgtact tccgaacggg
     8221 gtaaatccgc caacaaggcg ttaattaagg aagattttcc tgctccactt ggggcagaaa
     8281 taatataaag attgcctaaa ctcattattt gtatatacct atttgatttt gggaataggg
     8341 cgaatgatga ttcgccccta catttcatag gaataaataa aaaataatgg acaactttca
     8401 ttgtccatta cacaaaatta tctacgtgcc aaaggctgaa cgaaggtaat gcctaaatcc
     8461 caaggctgct caatccacgt ttcttgtgga atatcaatca cataatcatc aaccaacggt
     8521 gcaccgtgcg gtttcgcaaa cacggttaca aaacgagctt tcgggtacat tctgcgaatt
     8581 tcttttgccg tgttgccggt atccactaaa tcatctacca caataaagcc ttcgccatcg
     8641 gtatcggctg cgtgtaacac atttaactca ccttggctat cgtgatcgta gctggcaatg
     8701 cacactgttt ctacgtggcg aatacccaac tcacgtgcta aaacggctgc cggaaacaag
     8761 ccgccacggc tcaccgcaat aatccctttc cactgtgtgg caggtaataa attttctgcc
     8821 aacttgcgag cgtgcatatg gaacatatcc cacgtcacga catatttttc atttgtgtat
     8881 ttttcactca tagaaacaac ctaatataaa attgggggct accccgatat aaaaaattgc
     8941 actaggataa cccgaaaatg cttttttcgc catcatttca tttatttttt tgtgccggca
     9001 gctacgcaat cgtatgctta gcacaaaaaa ccaacactaa aatagctttt ctaaagtgaa
     9061 aaagacttcc ttgttttggc gagagtaaaa atcagcaata ttgctgtcaa ttttttgata
     9121 acggaaattc agcttcggca caatgccctg ccaatgccaa gtgcggttcc aaaccgctaa
     9181 attggcttga tattccgtgt ctaaccgctt atagccaaac aaatagtgct tgtcggcaaa
     9241 atatcgcttg ccaaagccga tacttgcctg cgttgcccag cgttcgcctt gaaaaaccgc
     9301 ccccactcga gccagccact tattcgagct ttgtgctttt tcccgtgcaa tttcacgcac
     9361 gccgtctaaa tttgcaaaaa accgcccatt tttgaccgct tgccactgca caccgccact
     9421 gagttggtgc tgatagctgt tataacggct tgcggttagc tcctcaaaat accgtttttg
     9481 caaatgggta aaactccccg acaccaacca ttgcgaatta aggtaacgca aaccgttgag
     9541 tgttgcccca aattgaacat tataacggct actccccagc caattttgct caataaaagg
     9601 cgaaaaagtc agccgataag cgacggtgcg gtagctataa ttcggcgaaa cggatacgga
     9661 ttgctcacgg taatctcggt tatcccaata gtaaatcccg ctataattga gcgttaaacc
     9721 gacaaaatga ttgcctttca cgttgtgcaa tttactcaac cctaagccat aacgcacgcc
     9781 ttttgctgat tgtggcaaac tgtctgcatt tttgcggaaa atccgcccat ttacattcac
     9841 aatcggcgaa gatgaggcat tattcacgtt atctgtttgg gtatattgca gataaaaatc
     9901 gggctgccac gcctcatttt cagcaatttg gacttgagta ttgcgggcaa ttttagcaag
     9961 ttccggcggt aaatgggctt gaatagcctt aaattcctgc tctgccgcac gaaattgctg
    10021 atcttctgcc aaaatcaacg ccaaatcaaa acgagggtaa accaaactcg ggggcttagc
    10081 taacagttgg cgatagtgaa aaactgcggt ttgatgatct tttttcgcat aggcaagtgc
    10141 ggcttgcgca tagtgccaca acaacgggtc aaaattttca gtttgcggat aacggcttaa
    10201 aagcggttca agcgttgccc aatcttggct gagaatcgct tggttaattt gctgttcaac
    10261 attctgattg actgaatacg caggctgata agcggtcggt ttttgtgaat tttttacaac
    10321 attttgctca aatttaaccg cttgcggctg acgctcaaag gaaatcgggt cagtgttgtg
    10381 ttcaatcacc ttttctgccc atacaacggg gctgaacagc gaaaataaaa ggggatattt
    10441 tttcataaag ataaagaaaa ttggtagggg cggacctata tgttcgcctc tacgggattt
    10501 atcactctct ccccttgtgg gagagggtta ttagaagctg taaattgaaa tctaaactat
    10561 tgtgtcttat ggtatctaca agcaatatca agacaaatgc cgtttaattt ttcgttaaac
    10621 ggcattgaac gttagaaaag gttatttttg gatatcgcca cgagtgccgg caagtccaaa
    10681 attactcact tccccagtaa gatttgcttt tgtctgaatt tcaccggcaa tttcctctgc
    10741 atttttaccg aaaaattcga ctgtatattt tccagaaagg tttaaaggat tattgccatg
    10801 tactgttgaa gaaatctgag tattattaat cgtcccctct tctaatacga ttaagtttcc
    10861 aaattctccc tcaactctac ctgaaccggt acgcttagag aaattaacat tataggttag
    10921 atcaccacca ttaaaacctt tagctccatc gtggttaaat gcttttcctg aatatgttgc
    10981 agtaccctct gttggtaatt tctctgtttt caatccttta actgtaactg ttccatcaac
    11041 tttatcaata taattaccgt tttcccagcc atttctttga actgcttgtg ctgttactac
    11101 agaatatggc tgattatata aataactctg tgttctgact gtgactttac cctcaatagt
    11161 ttctttacta ttaccaagtt ttaagccgta atttgtatca tcaatacctt ttgctttaat
    11221 aatagctata ggatctactt ctttttctgc tgctaaacgc tccgcttccg ctttctcttt
    11281 cgcc
//
LOCUS       DANMGB010000075        11193 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.075, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000075 DANMGB010000000
VERSION     DANMGB010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11193
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.075"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            95..1891
                     /locus_tag="PXG19_001471"
     CDS             95..1891
                     /locus_tag="PXG19_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL6066763.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            1971..3032
                     /locus_tag="PXG19_001472"
     CDS             1971..3032
                     /locus_tag="PXG19_001472"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6066764.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3020..3484
                     /locus_tag="PXG19_001473"
     CDS             3020..3484
                     /locus_tag="PXG19_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6066765.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3515..3631
                     /locus_tag="PXG19_001474"
     CDS             3515..3631
                     /locus_tag="PXG19_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL6066766.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3647..4114
                     /locus_tag="PXG19_001475"
     CDS             3647..4114
                     /locus_tag="PXG19_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6066767.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4169..4849
                     /locus_tag="PXG19_001476"
     CDS             4169..4849
                     /locus_tag="PXG19_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL6066768.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4917..6059)
                     /locus_tag="PXG19_001477"
     CDS             complement(4917..6059)
                     /locus_tag="PXG19_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL6066769.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6069..7448)
                     /locus_tag="PXG19_001478"
     CDS             complement(6069..7448)
                     /locus_tag="PXG19_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6066770.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7570..8664)
                     /locus_tag="PXG19_001479"
     CDS             complement(7570..8664)
                     /locus_tag="PXG19_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6066771.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8768..9220)
                     /locus_tag="PXG19_001480"
     CDS             complement(8768..9220)
                     /locus_tag="PXG19_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL6066772.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9241..9993)
                     /locus_tag="PXG19_001481"
     CDS             complement(9241..9993)
                     /locus_tag="PXG19_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL6066773.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10004..11188)
                     /locus_tag="PXG19_001482"
     CDS             complement(10004..11188)
                     /locus_tag="PXG19_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL6066774.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3211 a         2582 c         2349 g         3051 t
ORIGIN      
        1 atctttttta atctttttct agcgtttatc attaattccg acaacttctc tggagttttt
       61 tagttctatt aatctctcaa caaagaggcc ccctatggac tttttaaccg aaattctcct
      121 tttcttaaag gatcaagtgc tgaataaagc acccttctta ctaggtatcg tagcttgctt
      181 aggttacatt cttcttaaaa aagacacttc tacgattatt aaaggcacaa ttaaaacaat
      241 tgtcggtttt atgattgtac aagccggttc aggtttctta gtaaccaact ttaagccggt
      301 tattgatggc ttagccaaat atcaccaact taccggtgca gtaattgacc cttacaccag
      361 tatgcaatcg accattcaaa ccatgggcga gaactacgct tgggttggtt atgccgtaat
      421 tggggcgctg ttcctcaata ttctattagt ggtgttccgc cgtttaaccg gtatccgtac
      481 cattatgctc accggtcaca ttatgttcca acaagcaggc ttggttgcgg tgttctatat
      541 gatcatcgga gcgtcaatgt gggagaccat tatctacacc tcagtgttga tggctcttta
      601 ttggggtatt tcgtctaata ttatgtataa accaacccaa gcggtaacag gcggtgcagg
      661 cttctcaatt ggtcaccaac aacaaattgc ttcttggatt gcagtcaaac tcgcaccaaa
      721 acttggcgat aaagacgata ctgtagataa aatgaaattg cctaactggc tcaatatttt
      781 ccacgacagt atttctgcaa ccgcattagt aatgaccatc ttctttggaa tcatcttact
      841 ttcattcggt ttagataacc tcaaagaact tgctggcaaa accaaccagt ttatgtacat
      901 tcttgaaatg ggcttgaaat ttgcggtggc aattcaaatc attgtaaccg gcgtacgtat
      961 gtttgtagct gagctttcag aagccttcaa aggtattgct gaacgcttaa ttccaaactc
     1021 agtattagcg attgactgtg ccgctatcta cgctttctcg ccaaatgcga tggtattcgg
     1081 ctttatgtgg ggggctatcg gtcaatttgt ggcagtaggc ggcttgcttg cagtaggctc
     1141 accggtgctt attattccgg gctttatccc gatgttcttc tctaacgcaa ccattggtgt
     1201 gtttgcaaac caatttggtg gttggaaagc agtaatgaaa atctgttttg tgatgggtat
     1261 tattgaagtg cttggctcag cttgggttat tcaaatgctt gcttcacaag gcacaacctt
     1321 taacggttgg atgggtatgg ctgactgggc attgttcttc ccaccaatcc tacaaggtat
     1381 tatcagcatt ccgggcttct tctttgtaat tgtggcagca gcaatggttt atatgttctt
     1441 cgcatctaaa caacttcgtg ccgaagaagc agaagcggca gctcgtggca ttacacttga
     1501 acaattagac ggctacggct tagatgaagt aaaagcagaa ccaaaagcgg aggcagtagt
     1561 acaacaagcg gtcgaaaatg ccgaaaattc tgcaaaccca atccgcattc tagcggtgtg
     1621 tggctctggt caaggctcat caatgatgat gaaaatgaag atcaaaggct atctcgacaa
     1681 acgtggtatt ccgaatatta tggattcctg tgcggtaact gattacaaag gcaaattaag
     1741 cgaggttgat attattgtct ccagcaaaca tttagccaac gaaatcgaag taccggaagg
     1801 caaagcggta ttaggtgtac aaaatatgct aaatccaaac tcatttggtg atgaattagt
     1861 tgagctaatc aatcagcata atgcaaaata agtaagttta ggggtgaata atcaccccta
     1921 tctatgctaa agattgtaaa aactcacttc atcaaacgag gaattatcca atgaaaaaaa
     1981 tcttatccac cctgtttatg ctctccgcgg ttagcgttgc cgttgccaaa gaggtaaaca
     2041 ttaaactact tggtacctca gacgttcacg gacgtgttgt gccgtggagc tacggggcag
     2101 acgtggaaga caaatccggc tcattcgccc aaattgcaac ctatgtcaaa gaggtgcgtg
     2161 ccaaccacaa aaatgtgttg ctgtttgata ttggcgatgc gattcaagac aaccaagtcg
     2221 aagagttcgc taaaacctta gacaaagcga aaaacaatcc cgtgccgaaa gtgctgaatg
     2281 caatgaatta cgacatcttc attctcggca accacgaatt taacttcgga atgccgaatt
     2341 tagatgcgat tttaaaagac atcaacgcca aaattctcac tgccaacttc tatcacaaag
     2401 acggcaaacg ctacgttgag ccaactacca tcattgaacg tgatggcgta aaacttggga
     2461 ttatcggctt aaccacccca atgtcggcta tttttgaaaa agacaccggt catttagacg
     2521 caatgaagtt cacttcgccg attgaagagg cgaaagccca aattgccgat ctcaaagcca
     2581 aaggcgtgga cgccattatt gtgctggcac atatggggat tgagaacgaa aacaacattc
     2641 ccgacaccgg cgtggcggat ttagtgaatg cagtggacgg tattgatgta attatcgccg
     2701 gccatatgca taaagatgtg ccgagtgaaa ctatcaaaaa taccctgatt accgaaccgc
     2761 accgctacgg cacagtggtt tccgaagttg atcttgcctt tgatgtgaat gacaaaggcg
     2821 aagtgaaact actttctaaa accgccaaaa ccgtaccggt gaagaaactc gcaagcgatc
     2881 cggaaatcga aaaaatttac caaccgtatc acaatgaact gcgtgcctta aacaacgtca
     2941 aaatcggtga aactgcacaa gatttaatcc cacaaggcaa aatcacggtg tatcgattgc
     3001 tttctcgcaa gacaccggaa tgtcctcatt gatccacgat gtgcaacaac attacagcgg
     3061 tgcagacgta gtgagttttg catttgacta cgaaaccgtg cgtttagaca aaggcgacat
     3121 caagaaaaaa gacatcatct acaactaccg ctatgccggt ggcgatgtga gcatgtatga
     3181 gctaaccggc aaacagctta aacagtatat ggaatggtca gcggattact tcgacaccat
     3241 tcaagccggt gacaaagact accgctacaa cgctgtgcgg ggtaaatcta aatacgttac
     3301 cttcgaccta ttcggcggcg taagctacaa catcgaccta cgcaatccaa gcggtagcaa
     3361 aattgtcgat ctaaaactgg caaacggcag tctaatcacc gatgacggca aatacaaagt
     3421 gggaatgaac tcctaccgct ttggtcagct caccaaaaaa ggcggcatct gggaaggaca
     3481 gtaaatcccc gtgatttggg aatccaaagt cgccatgggg gctgaaaaag gcacaatcca
     3541 aaatatgctg attgattaca tcaccaacgt caaaggcgga aaaatcgaag gcaaatcgca
     3601 taaccgctgg gcgattatcg gcttaaatta acgaaaggga aacactatga acttaaaaca
     3661 atctcttatt gaaaataact ctattttgct caatcaatca gcggcgaatt gggaagacgc
     3721 aatcaaaatc ggcactgatt tattagtcaa agccggtacg attgaaccac gctattacga
     3781 taatattgta agcaaaatca aagagatggg gccttatatt attcttgcac cgggcttggc
     3841 aatgcctcac gcccgtccgg aagaaggtgt gattaaaacc tctttcgctt tagtgacttt
     3901 tgacaccccg atttattttg agggcgaaga tgagccggtt cacgttatgc taacccttgc
     3961 agggagtgac tctgatcagc atatgcaagg cttggtagaa atcacccaag tgctagatga
     4021 cccagagagc gacacaggtg ttgatttaga taaaatccgc cgctgtaaaa cggctgaaga
     4081 agtgtatgca gtaatcgatc aggcattagc ctaatattct acaagcggtt caaaaacatc
     4141 aatattttgc aaatagagga atacaattat gtccaaacca ttattacaaa ttgcccttga
     4201 ttctctttca ctggaaaaag cggtggcgga tgcaaaacaa gcagaaaacc aagtcgaaat
     4261 tattgaatgc ggtactattc ttgcttttgc tgagggtatg aaagccgttt ccaccttgcg
     4321 tgtattgcac ccaaatcaca ttattgtgtg cgacttaaaa accaccgatg gcggtgcaat
     4381 tttagctaaa atggcatttg aagccggtgc cgactggctc acggtttcgg ctgcggctca
     4441 ccctgcaacc aaagcggctt gcaaaaaagt ggcggacgaa tttaacgctg ctcacccgga
     4501 gctaaaagtg aaaaaagaga ttcaaattga aatctacggc aactggacgg tggaaaaaga
     4561 tgccaaagag tgggtagaat taggggtaac ccaagcgatt taccaccgct cccgtgatgc
     4621 ggaactagca ggtaaaggtt ggacaacgga agatgttgag ttaatgaaac agctttctga
     4681 cttaggcatt gaattatcta tcaccggcgg tatcgtaccg gaagatattc acctgttcaa
     4741 agagatcaaa aacgccaaag cctttattgc aggccgtgct ttagtcggtg aaaaaggcaa
     4801 acaaactgcc gaagccattc gtgtggagat tgataaatac tggaactaat ccggcattga
     4861 aacccaataa aaatggcgtt ctctcaaccg gaacgccatt ttttatctca ttttttctat
     4921 tcttgcaagg ccgatatttt ccacaatctc gctacatttt cggcagttga aatcaggttc
     4981 tctttgcctg attttaacac cgcttctaaa ttgctgacct gtcgaataat cggaaatacc
     5041 gcatcaatgc cgtgttggta caccacaggg taatcttctt tcaatgagcc aactatcgca
     5101 atcaccggct tgccaaactg cttagcgact ttcgccaccc caatcggggt tttaccggcg
     5161 atagattgag cgtccattcg cccttcccct gtcaccacca aatccgcatc ggcaagtttc
     5221 tcagcaagat cggttgcctc aagaataatt tgcacgccgg aacgtaatgt tacgttaggc
     5281 agtagcagta aaccaccgcc cattccaccg gctgcaccgg caccggcttt ctcggcaatc
     5341 tcaatgccta attgggattt tacggtttcg gcaaaatgca acagggcgtg gtcgagcatt
     5401 ttaaccattt ccggtgtagc tcctttctgt ggcccaaaaa ttgccgaagc ccctcgctcg
     5461 ccacacagcg gattatcgac atcgcaagca acctcaaatt ccacttgctt taagcgtgaa
     5521 tccaaaccgc ttaaatcaat ctgctgaatt tggcttaatg cctcgccacc aaagccgatt
     5581 tcccgctgtt cggcatttag aaatttcgct cctaaggctt gtagcattcc gacaccgcca
     5641 tcgttagtcg cactgccgcc aatgccgaga atgatttttt ccacccctaa atctaaggcg
     5701 gctttaatta actgccccgt gccgtagctg gtggtaacca gcggatttcg ttgctccatt
     5761 ggcactaaat gcaagccact tgccgccgcc atttcaataa aggcggtttt ttgatccccc
     5821 gacaagccaa aaaagccctc cacctcattt gcaagcggtg caattacgct gattttttgc
     5881 aaactgccgt gagtggcatc aaccagcgac tgtaccgagc cttcgccacc gtctgccatc
     5941 ggtacgagct gatactccgc ctcagggaaa acacgggcaa aaccctgttg aattgcttga
     6001 gccacttcta atgcggtcaa actctcttta aatgaatccg gtgcaatcac aattttcatc
     6061 gtcaatcctt agagtaaaat caatgaaagc agataaaccg tgagcatacc caccacaccc
     6121 ataatgaaag ttagggtagt ttgcgtacga tagccttgtt gcggagtcag tttagtaaag
     6181 tttgttacca cccagtagta gctgtcattg gcgtgggaaa cgcacattga gccagccgca
     6241 atcgccatta cggttaaggc tgccgccatt tcactggtta gccctaaggc gttcattaat
     6301 gagtccggtg cgttgaacat tcccataatg gaggcggtgg tgataattgc caccgttgag
     6361 ctgccttgtg cggtttttaa aattgccgaa atcaggaacg ggaagaaaat ccctgctgta
     6421 ctgataatat gagcgttttg cttgatgtaa tccacaaagc cggcttgagt aatcacgtta
     6481 cctagcacac caccggcggc ggtaataaag agaattgggc cgactaattt cagggtatca
     6541 ttggttaagc tgtcaaattc cgccatttta ccgcttgaaa ccagtaggaa aatagcgaag
     6601 atcaccccaa ttgctaacgc aataatcggg ttgccgacaa attgtaggaa tacgccgaaa
     6661 tcgccactta caccggcaat tttggcaatc gagccgatag ccattaagat aatcggcata
     6721 aaaatcgggg caaagcttaa aaacccactt ggtaatttgc cgtattgttt gatcagatct
     6781 tcatagcttt ggctgattac ttgatccgct tgagcttctt ccatcacgct gacttgtttg
     6841 ccaacatatt tggcaaagaa gtaactggca atcaacacag gaatcgaaac cacaaagccc
     6901 attccgatca caagcaggag attatggctt aaaccaacag caccggctgc tgcaatcggg
     6961 cccggtgtcg gaggaataaa gacgtgggag gcatataaac cggcacttaa cgccaccgcc
     7021 attcccaccg gattggcaag aatttttttg cgaatagctt cacgaatcgg gtttaacacc
     7081 acaaagccgc tatcacagaa cactgggata ccaaccaccc agcccataat caacattgcc
     7141 agttcagggc gtttttgccc caccactttt accaccatat cggctaattt gagggctgca
     7201 ccggtttttt ctaaaatcgt gccgataatc gccccaaaaa taatcacgat accgatactt
     7261 ttgaaggtat tactaaaacc ttcgcccaca atagttggaa ttttggcaag cggtaaacct
     7321 gccactaatg caagggctat cgaaatcgac attaaggcta agaacgggtg aactttccac
     7381 ttcgcaatca tataaatcat tatgatgata gcgaccagaa agatcagaat aagtgcaata
     7441 cctgacataa taagtctcct cattgtagaa aaatgaactt attattcggt atttattgct
     7501 aaaaagattt agataaattt gcaaaaaatt tgttaaaaac gaccgcttgt ttgtatattt
     7561 ttacaatttt tacgacagaa ccgctccaag atacagcaca aatttttgct ctatgttatt
     7621 gaaagataaa ccagttatct gctcaatctt ctctaaacgg taacgtagcg tatttgggtg
     7681 aataaacaat tttttggcag cgtgatccag atcacaattt gcgaaaaaat agtaacgcag
     7741 acttttcagt aacacctgtt ttttatcgga aaccagtaaa gcttggaacg gcgagagcaa
     7801 ggttttcgct tcccaagagt ggctgaaact gtgcaagagg gccggcagtt taaaatcttc
     7861 aaaatgaata atctgcttac ggctttggat ctgctcggca taattgaggg tatggcaggc
     7921 ggtttggtag gaaatatggg tttgcgataa attttcgacc gccagcccaa ccaccgtttt
     7981 gaaggaaata tccggatcgt taagtttgtt tagtgcattg cggattaacg atttttcgtt
     8041 ggataaatga ttcagcaagg caattttatc taacccaatc acggcggtga gtaggctcgg
     8101 gaaataatgt tcgaaaaaat caatcaggcg ttggagtttt tccgcagtag agccgtgaat
     8161 tttaatcacc atcaccgaca gcggttttgc aaaatcttgc ccgaaaaaga ccgcttgttg
     8221 ctggatttct gctgtgctta ggctaccttt gagcaaggcc cgcacaaact cttcccgata
     8281 gcggcgttgc caacgttcct gttccaactc aaacgcttgc tgcataatca gctccgccgc
     8341 cattttcacc aattgagcat attgccgaac ttgttgtggc tgccctgaaa tccccactac
     8401 accaatggtt gagcctaaat agtgaagcgg taagttaatg cccgctttca cttcatcgca
     8461 ccactgtttt gcaagatttt catcaatttc gaccgcttga tcgttgcgta acgcaatcac
     8521 cgctcctgtg tgtcgttgcc cgatacgacc gacatcgccg gaagcaataa tcaccccttc
     8581 actatccatc acattgacgg agttgggaat aatctgcatc gtgcgcttga cgatgcggtc
     8641 ggcaatcgct tggttgagtt tcattatatg attcctactc attcccaata ctatgaaaaa
     8701 tccctctttc gagggatttg caaattatct acgcttccac ttcctgagaa tagatcatag
     8761 cgtgaagtta ttttgccaca gtcgctttaa ttaatttttc cgctttggca aggttgtttt
     8821 ctacatcagc ataatcggta ttagcgtgag ccaccacttg atcggcacga tttaacatta
     8881 cttcgacctt gcccttgttc ggttcggtaa ttaacacttt taacggtaat tgcaacgcta
     8941 acatcggatc tttcaccatt aatggcgtac cggctttcgg tgtgccgtaa accaatacgg
     9001 ttgccggttg catttctaag ccggcttgtt ttgccgccgc ttggtgatcg atttcggcaa
     9061 aaatcgtcat tcctttttct tttaaggtgt tggttaaagt tgtgactgta gtttggaaat
     9121 caaatttact ttcaaatacc accggtttga catcggcaat atctgccatt gccacgctgc
     9181 tcattgctaa tgcagaaact gcgactgctt ttaagttcat ttcttttctc ctcaaataga
     9241 ttaaataatc ccttgttctt ccaacttgcc taagaaataa ggcatctgtt tacgccaagt
     9301 cggccagtca tggtcaatat caaagcccca gtagtcaaac caagcatcga tcccttttgc
     9361 gttaaaagcc tcttgtaatc ggcgggtgtc ttcaatatgc tgttcttccc acgcaccttg
     9421 tccgactgca atcacatagt gattttggcg gtagcggtct aagaaccaat cgtcattttg
     9481 accccataca taatcaatcg gcgagttaaa ataaaccgct ttatcgccat aaaactcacc
     9541 actgaaaaag cgagcgtcat aaacaccgct taaggcgatg gcaatatcaa acagatccgg
     9601 atgacgtaag gcaaagttta ccgtatggaa agcccccata ctacaaccgg tggcaatcat
     9661 cgtgccgttc cagtgcgatt catggcggat taacggcact agctcgtgaa taatataacg
     9721 gtcgtaagca ttatgagcta atgccatatc gtgtccggat ttatgtttag ataaccaaga
     9781 ttccgcatcg taagaatcag gcgtgtaaaa tttgattaag ccacgttcaa taaaggaacg
     9841 gcaagcctca atcattccaa aattaccata ctcgttttca ttgccgccgg aggaagggaa
     9901 aacaataacc ggtttacctg cgtgtccgta aacgttgaac gacatttcac gacctaattc
     9961 tccactccag tggcttcttt tttcaaaatg catacttcac ctcttactgt ttagcttgtg
    10021 caaattgtgc aatttcacgc atttgctcca ttgtttcggt acgggctaaa atgccttgtt
    10081 cgcccatcac tttggcaaat acgcccggta cgctttgcac gctgataata ttgccggcaa
    10141 atttctcaca aacagcttca atcgaattca cataattttg gtttgccttg cgggaaatat
    10201 aaaccacgtt ccaagggtgc tgaatatcgg catagaattt gttttctttc acaatattgg
    10261 caaattcacg gaacacatcg aaatcgttgg cgtagttcca catatcaata gttaagccac
    10321 ccggcggacg gcagttgatt tcgagtggta acaactcttc ttttttgctc cctttaacac
    10381 ggaagaactc aaaatggaaa aaacgctctt ttacgttaaa ggctttcaca cattgtttgc
    10441 ccatttccac taattttggc gaaatttcac atgggacata gtagaacata tcgccatctt
    10501 ttgaaacggt atctaatacc gcttctgaat attcaaggct ggagtagaaa acgatattgc
    10561 cctctttatc ggttaaaccg tcaaaggtaa taatatcgcc gtcaataaac tcttccataa
    10621 tatattcaac cgttggcgtt ttataaccga agaaagcttc taactcttcc gcagttttga
    10681 ttttgtaagt atcgcttgcc ccaacccctg aatttggctt gataatcacc gggaatttaa
    10741 gctgttttgc taatttgcgg gcatcttcat catctttaaa tactcgccct tgtgccactt
    10801 tcaagccggt tttgcggaat acctctttca tttgggcttt ggttttaatt gagagcatat
    10861 catcgctctt ataaccaaac acattgaaat cggtacgcaa tttcgcatct aactccagcc
    10921 aatattcatt gtgcgattca atgcggtcaa ttcgcccgta tttatgggca aagtacgcga
    10981 ccgcacgata aacttgttcg taatcttcca tattatctac acgataatat tcagtcaggg
    11041 aatgacgcag attttcgctc aatgattcat aaggggcatc tgcaattccc aatgtattaa
    11101 aaccggcttc acgcaaacga atggcaaagg tttcaaagtt cgttgggaag tgcggggaaa
    11161 tcatcacaaa attaagtggt ctagacatag ttc
//
LOCUS       DANMGB010000076        11166 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.076, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000076 DANMGB010000000
VERSION     DANMGB010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11166
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.076"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            24..986
                     /gene="ribF"
                     /locus_tag="PXG19_001483"
     CDS             24..986
                     /gene="ribF"
                     /locus_tag="PXG19_001483"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL6066775.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            1089..3905
                     /gene="ileS"
                     /locus_tag="PXG19_001484"
     CDS             1089..3905
                     /gene="ileS"
                     /locus_tag="PXG19_001484"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL6066776.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            4030..5577
                     /locus_tag="PXG19_001485"
     CDS             4030..5577
                     /locus_tag="PXG19_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL6066777.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            5647..7014
                     /gene="pssA"
                     /locus_tag="PXG19_001486"
     CDS             5647..7014
                     /gene="pssA"
                     /locus_tag="PXG19_001486"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL6066778.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            7069..7812
                     /gene="rlmB"
                     /locus_tag="PXG19_001487"
     CDS             7069..7812
                     /gene="rlmB"
                     /locus_tag="PXG19_001487"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL6066779.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(7899..9311)
                     /locus_tag="PXG19_001488"
     CDS             complement(7899..9311)
                     /locus_tag="PXG19_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066780.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(9400..10182)
                     /locus_tag="PXG19_001489"
     CDS             complement(9400..10182)
                     /locus_tag="PXG19_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066781.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            complement(10192..11124)
                     /locus_tag="PXG19_001490"
     CDS             complement(10192..11124)
                     /locus_tag="PXG19_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066782.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
BASE COUNT         3263 a         2283 c         2662 g         2958 t
ORIGIN      
        1 acttataaaa tggtttatct tttatgcaac ttattcgagg tttccacaac ttagacaaac
       61 acatcgcttt aaatcaaggc tgtgttctct ctatcgggaa tttcgatggt gtgcatcttg
      121 ggcatcaaaa tattttggct cgtctttgtg atagagcttt agatttagga ttgccctcag
      181 ttgtgatgtt atttgagcca caacctcgag agttttttgc aaaaaaaagt ggaaattcaa
      241 ccgcttgtaa cccgcccgcc cgcttaatgc gcctgcgaga taagctaaaa tatttggaag
      301 aagccggtgt ggattttgtg ctatgcgtgc gttttagtga aaaatttgct caaatttcgg
      361 cagacgattt catcagcgat ttgctcgcta aaagactgaa agtacgctat ttaagtgtag
      421 gcgatgattt tcgctttggg gcaaaacggg cgggcagttt tgaaacttta cgcaatgccg
      481 gcttaaaata tcgctttgcg gtggaagaaa gccataccca tagcttaaac gaagaaagaa
      541 ttagcagctc attagtgcga gaagccttac aaaacaatga gttagatttg gcagagaaat
      601 tactcggcaa gccttattcg attctgggac gcgttgcaca cggtaataaa ctcggcagaa
      661 ccattggttt tcctaccgca aatattatgc tcaatcgttt ggttacgccg attcaagggg
      721 tatttgcggt aaaagtgaag accaaacagg gcagttttaa cggaatcgcc aatgtcggca
      781 accgcccgac cattaacggt actaagccgt tattagaagt gcatattttt gatttcaatg
      841 cctctattta cggtgaggcg attgaagtga tctttttaaa aaaattacgc aatgaaataa
      901 aatttcccga ctttgaagca ctaaaagccc agattgagaa agatcgcttg caagcggttg
      961 aattttttaa ggaatttgca aggtgagcct ttctagtttc cagccccaga ggggctgagc
     1021 tatgcttaac ctagtacggc tatgccgtgc taggcataaa acagataatt ttaacgagaa
     1081 ataaaaaaat gactattgac tacaaaaaca ccttaaactt gcctgaaaca ggctttccta
     1141 tgcgtgggga tctcgcgaaa cgtgaacccg atatgttaaa aaattggtat gacaaaaatt
     1201 tataccaaaa aattcgtact gcctcgaaag gcaagaaaac ctttattttg catgatggtc
     1261 ctccgtatgc taacggtaat attcacttag gtcacgcagt gaataaaatt ttaaaagata
     1321 tgattttgaa atcgaaaacc gcattaggtt tcgatacccc ttatgtgccg ggctgggact
     1381 gtcacggttt gccgattgag ctgaaagtag aagggattgt tggtaaacca aatgagaaaa
     1441 tttcggctgc cgagtttcgc caagcgtgcc gtgactatgc gaaagaacaa gtagaaggtc
     1501 agaaagccga ttttatccgt atgggtattt taggtgattg ggataaccca tacctaacaa
     1561 tgaattttaa cactgaggcg aatattattc gcacgctcgg caaagtgatt gcgaacgggc
     1621 atttatacaa aggttcaaaa ccggtacatt ggtgcttaga ttgtggatct tcgttagcgg
     1681 aagctgaagt ggaatatgaa gataaagttt ctccctctat ttatgtgcgt tttaatgctg
     1741 tggacgtaaa tgcggtagaa gaaaaattca acgcacaggg taaaggtaga ggggcattat
     1801 ctgcggttat ttggacaact accccttgga ctattccgtc taaccgtgcg attgcgatca
     1861 accctgaatt agactatgcc ttagtccaat taggtgatga gcgtgtgtta ctagcggtcg
     1921 atttagtcga agatgttgca aaagcagcag gcgttgaatc tgctgagatt ttagcaacca
     1981 ccaaaggcga aaacttagaa ttattacgct ttaaccaccc attctatgat tacagcgtgc
     2041 catttatttt tggcgaccac gttaccacag acggtggtac agggttagtg catactgcac
     2101 cggatcacgg tgcggacgac ttcgtggtcg ctcgcaaata taacattgaa atggcagggc
     2161 taatttccaa tgacggtaaa ttcaaagcag acaccccgtt ctttgccggc ttaggtgtgt
     2221 ttgaatccaa cgataaagta gtcgaaaaat tacaagaagt gggagcatta ttaaaattat
     2281 cccgcatcaa gcatagttat ccgcactgtt ggagacacaa aaccccgatt atcttccgtg
     2341 ctaccccaca atggtttatc ggaatggaaa cccaaggctt acgccagcaa gcactaggag
     2401 aaatcaaatc ggtgcgttgg atcccaagct ggggtgaagc tcgtattgat acgatggtgg
     2461 caaaccgccc agactggtgt atttcacgcc aacgtacttg gggcgtgcca atggcgatgt
     2521 ttgtgcataa tgaaaccgaa gaattacatc ctcgcacttt agaattaatt gaagaagtgg
     2581 cgaaacgtgt agaagaaaaa ggcattcaag cgtggtggga tttagatcct gcggaattgc
     2641 tcggtgaaga agccaaagat taccgcaaag tgccggatac cttagacgtg tggtttgatt
     2701 caggatcgac ctatgcctct gttgtagaac aacgccctga atttaacggc aattcagcgg
     2761 atatgtattt agaaggttca gaccaacatc gtggttggtt tatgtcatct ttaatgcttt
     2821 ccactgctac taacggcaaa gcaccataca aacaagtgct aactcacggt tttaccgtag
     2881 atgagaaagg cagaaaaatg tccaaatcgc ttggcaacgt aattgtgcca agtgaagtgt
     2941 ggaacaaaaa cggtgcagat attttacgct tatgggttgc ctccaccgac tataccggtg
     3001 agattaccgt ttcgcacaat attttaaaca gtgccgggga atcataccgc cgtattcgta
     3061 acacagcccg tttcttattg gcgaacttga acggtttcga tccaaaaagt gatttagttc
     3121 aaccgcaaga gatgatcgcc ttagaccgct gggcggtggc ttgtgcttta gaggctcaaa
     3181 acgacatcaa agaagcctat gataactacc aattccacac ggtagtacag cgtttaatgc
     3241 gtttctgctc gattgaaatg gggtctttct acttagatat tatcaaagac cgccaataca
     3301 ccaccaaagc cgacagcctt gcccgccgta gctgccaaac agcgttatgg catattgcag
     3361 aagcgttagt acgttggatt gcaccgattt tatccttcac agccgatgaa atttggggct
     3421 acttaccgca ggtggaaggc agaagtgaat ttgtctttac cgaagaattc tacaccggat
     3481 tattcggttt aaccgagcaa gataaattag atgatgctta ctggcaacaa atcttaaaag
     3541 tgcgtgcgga agtcaaccgt gtgctggaac aagcccgtaa agacaaagta attggtgctg
     3601 gcttagaagc caaggtgacg gtattcgcca atgatgaaat tcgcccgtta ttagaacaac
     3661 ttggcaatga attacgcttt gtgctgatta cctcacaagc gattgttaaa ccactggcgg
     3721 aagcagatat tgcggaaggc gaattagccg gactcgcagt aaaagtggaa aatgcagatg
     3781 gtgagaaatg ccctcgttgc tggcattatg ctaccgacat cggctcgcac tctggccacg
     3841 aagaagtttg cggacgttgt gtggaaaacg tagccggcga aggcgaaaaa cgcttgtttg
     3901 cttaaaatgt aattcaattc atctttctaa ggcagaggaa actctgcctt agcttttcca
     3961 gcgatagata gacactcagt ttaaaatttg caaaaatttt cggaaaaata accgcttgta
     4021 ttgatgtaaa tgatgaaaat aatcgctttt ctttttattt ttctctccgt tttttctcac
     4081 actgctttgg ctaattctat ggctgaacaa tgtgtcgcgt taaaatctaa ctcgccggaa
     4141 aaaacggcta tttataaagc tgaatgggtt gagaaatctg ctgagttgcc ggcttactgt
     4201 ttagtacaag gtgaaattgg aaaacgggtg gaggtggata atgttcctta cggtattcaa
     4261 tttgagctac gtttacccga acaatggaat gaaaaattct tatttcaggg ggcgggcggt
     4321 gtaggtgggg tgattttccc tgccattggt aagctctatc cgcacggggc gagtggtgca
     4381 aatggcttaa acagaggcta tgcagtagtg agtaacgaca gtggtcacgc cactcgagat
     4441 ttagtgttta ccgcagatcc cgaagctcgc tcaaattatg cctatgcctc tatcggcaaa
     4501 gtgaccacgg ttgccaagca gttgattgcc gaattttacc gaaaaccgag caagcacaat
     4561 tacattatgg gctgctcgaa tggtggtcgt gaggcgatga tggcggcaat gcgttatcca
     4621 caggaatttg acggtgtgat tgcaggcagc cccggctttc gggtttcccg ttcagtcttg
     4681 gcggaagtat gggataatcg agccttgttg gcagttgctc cgaagaatgg tgatggcgac
     4741 aaaattttat cccaagccct cactcaacaa gatttagatg tgattgccaa tggcgtatta
     4801 acacgttgcg ataagttaga cggcttagca gacggtttaa ttaatgcgtg ggaacagtgt
     4861 gatttccagc cggaaatggt ggcaaagcaa ctggggcaga aaaaagtcgc tttaatcaaa
     4921 acgattttcg agggggcgaa aaacagtcga ggcgagctga tttatagccc ttgggcgtat
     4981 gattccggca ttaacgctaa aggctggcgg gattggaaat taggtgatag ccaaaccgct
     5041 cagcccaaca gcattagttt taaaatggga ttgaaaagtt tgacccatta ctatttagcc
     5101 cccagagtgc cgagccgtga tccactcagc gtagatttgg atcaagccag cgaacaagtg
     5161 aaagcggtag ggagcattca cgatacagat caagttgatt tatccgcttt taagcagaac
     5221 ggtggcaaaa tgctgattta tcaaggcgtt tcagacccga ttttttcggc agttgatctc
     5281 aaaaattggt atcaaagcct acaacaagcg gtcgaaaatc cgcaacattt tgcaaaattg
     5341 tttttcgtgt cggcaatgaa ccattgtggg cgaggggcaa cggtgaatga ttttgatatg
     5401 ctcactgccc ttgaaaattg ggttgagaaa ggactggagc cggaaagtat tgccgccaaa
     5461 gccggtgagc tttaccctaa taaagccaag cagatcccgc tttgtgctta tccgaaagtc
     5521 gcaatttatc aaaccggaga agatcctaat cgtttgacca gctatcaatg ccgttaagcg
     5581 aaaatcgctt tattggcgat ttcagtgtaa aatagcaggc aacgattgaa aattttggaa
     5641 tcaatgatgt taattttgaa caaacaacgt aaagctgaat acctattgaa aagcctgcca
     5701 tacttaccac aagtggcaga gcaggttcag tttctcgcct cgagcaaagc gtttaaacaa
     5761 caaattttac agctgattca aacggcaaaa aagcgtattt atataaccgc tctttacttt
     5821 gaaaaagatg aagccgggca ggaagtatta gctgctttat atcaagcgaa gcgaaataat
     5881 cctgaactgg aaattaacat tttggttgat tggcaccgag cccaacgtgg gcgtattggt
     5941 gaggcagaga atttatctaa cgccgactgg tatgcaaaag ttaaatacga acaaggttta
     6001 ccggcagggc aagagattgc cttttacggt gtgtcgatta acggacgaga agtgtttggt
     6061 gtattgcatt tgaaaggctt cgtatttgac gatacgattt tgtatagcgg agcaagcatt
     6121 aataatgtgt atttgcatca atttgaacgt taccgttatg accgttacca cgtcattgaa
     6181 aataaagttc ttgccgatag ctgggtgacg tttattcaac agcatctttt aaccaatgaa
     6241 gcggtaaaac gtttagatac ggaaaatcgc ccgaaaacgg ctgaaattcg tgcgcaaatt
     6301 aagcatttcc gcaaacaatt aagtcgggaa gcgtatttat ttaacggtgt tgctgaaaat
     6361 ggtcgcttag cggtttctcc tttagtaggc ttagggcgac gtaagaatca gttaaataaa
     6421 gtgattgaag cgttgtttta tcaaactgag cagaaattaa cgatttgcac tccgtatttt
     6481 aattttccgc attctctgag aacccgtatt gaatggctat tggcaaacgg caaatcggtt
     6541 gaaattattg tgggggataa aaccgctaat gatttctaca ccaagccgga cgaaaaattc
     6601 acgatggcat cggctctgcc ttatttgtat gaaaagaact tacgagcctt tgcaaaacgg
     6661 ttggacggtt atgtacaaaa taaacagtta accattcgct tatggaaaga tggcgaaaac
     6721 agctaccact taaaaggggt ttgggtggat aaccgctata ttttgctgac cggcaataac
     6781 cttaacccaa gagcgtggcg gttagatgcc gaaaatgcaa ttttaatttc cgatcctcaa
     6841 catcaattaa gtgaaaaagc agaaacggag ttaaaccaaa tttgccaaca tacgcagatt
     6901 ttaactcact acagtgattt ggaagtttta accgattacc ctgaaaatgt gcgtaaattg
     6961 ctgaaaaaat tcggcagggt taagttggat aaaattgtga agatgttgct ttagttaggt
     7021 atttatatgg gcgagctgat gggttcgccc aattattaag gataaaatat gagcgaacaa
     7081 atttatggca ttcacgcagt gaaagccttt ttggataatg cacctgagcg tttaattgaa
     7141 gtgctggtgc taaaagggcg tgaagataaa cgcttaatgc cactattaaa tgaattacaa
     7201 cgtttagggg tggcaattca acaagtgaac cgccaaacct tagataacaa atcgcaaggt
     7261 gaagtgcatc aagggattat tgccagagtc gtgccacaaa aagagctgaa tgaacacgat
     7321 ttagaggcga tcttaagcca aaagaaaaat ccactcttgt tgattttaga tggcgtgacc
     7381 gaccctcaca acctaggggc ttgtttgcgt accgctgatg cggcaggggt tgatgcggtt
     7441 attgtgccga aagataaatc tgctcagctt acaccaaccg ctcgcaaagt cgcctgtggg
     7501 gcagcggaag tgatgccact gattcgagtt accaatctgg ctcgcacaat gcgagattta
     7561 caagaacggc ataatgtctg gattgtcggc acggcaggtg aggcggaatc gggcatttat
     7621 gaagcaaaat taaccggctc gattgcgtta gttatggggg cagaaggcga cggaatgcgt
     7681 cgccttaccc gtgagcattg cgaccagctt atcagcattc caatggcggg ctcagtatct
     7741 tctttgaatg tctcagttgc aaccggggtc tgtctgtttg aaattgtacg gcagaagctg
     7801 gctgggcaat aaggaataag taagaaaaat gcgaagaact gatgtcttcg catttttgtt
     7861 tttagagccg caaaaaatct cagaaattga accgcttgtt agcccacata ctcttccaaa
     7921 ttaatcactt tatcgcacga tttctcaatt agataaggat cgtgactgac caaaatcaga
     7981 ctgcaatttc tcgctcggca ctggttgatc agcaattcta tcgtttcttg ttgtgtgatt
     8041 gggtcaagcc gagaagtgac ttcatcggca aacagtagta ccggttctaa gagcaaggct
     8101 cgcaaaattg ctactcgttg tagctcgccg ccggagacat tttccgcatt gcgttgcaaa
     8161 atttctgggt tgagcgaaag ttgttgcagt aaacttggaa tcggcagtcg atctaattgg
     8221 tgcttgttaa tcacatcatc aagcaaggtt tttagactga cattcggagc aaaggcttcc
     8281 ggtgggtctt ggtaaagctt caacacttgg tgttttttat ggctgtggct gtgccacaca
     8341 acctcgcccg atttcggctt aagcaaacca caaagtacat cggcaagcga gcttttgcca
     8401 atcccactat gcccgacaat cccaagcact tcgcctttgt gtaagtcaaa ggaaaggttg
     8461 ctaaacagcg ttttcttacc acgggcaata ctcaaatttt taaccgaaac aagcggttgt
     8521 ttttggctta aattttgcag atcttgcaat ggttgccaat gttttggatc ggcactgata
     8581 agtgctttgg tgtaagggtg ttgtgggtta tttaacaacg cttttgcctc accttgctcc
     8641 aacagttcgc cttttttcat cactaaaata gtgccaccga gttgctcggc aacttcaata
     8701 tcgtgagtaa tggtgagcaa gcctccaccg ttttggtagg cggattttaa cagttcaatc
     8761 actttgcctt tactgattgg gtcaagccct ttggtcggct catcggcaag taaaattttg
     8821 ccaccggcgg cagttgcaat cgcaaaagag gcacgttgag ccattccacc ggaaagctgg
     8881 tgtgggtagt tttcaaccga ttcgcccagc ccaagtttgg ctaaataggc tttgctttcc
     8941 gttttggctt gagatgatgg tttgcctgcc acatagtgaa aactttccca caactgcttg
     9001 ccgattgcca taatcggatt aagcgagcgg cgaggctctt gtggcagcat taccaaggtt
     9061 ttaccccaca atgtttgcaa gcggtcggat tcggtggaaa ttttgcaatt ttttaccgaa
     9121 atttcaccgc ttgcgattaa gccgtcgggt aacgccccca taatcgcttg aatcagcagg
     9181 cttttgcctg agccggtttc gcctaagata gtaatatttt ttcctgcctt taattgtagg
     9241 ctaatcggtt cgaccagctg taatctgttt tcggtttcaa cagataggtt ttggatatcg
     9301 agtaatttca tcttcatttt attactgtag gggcgggccc tgtgcccgcc cataaatata
     9361 ataagaattt tgggcaggca caggacctgc ccctacgcat tatttaattt ttctagacaa
     9421 taattgtaag ctgagtacca ttaagaaaac ggcaaccact ggttgcaaaa atatcagcgg
     9481 tgcttcgtag tagtaaggga atagttcggt catcatcaag cctaattctg ctgtaggcgg
     9541 gcgaagccct acgctgacaa agccaagtgt ggcgagagct aaaatcgcat tgccgagcga
     9601 gaatgccgat aaagtggcaa tcatcggtaa taaacggggc aataagtggc gtttgaagct
     9661 ataaaaccag cccattccca ttaggcgtga ggcttgaatt tccgagctgt ttgccattgt
     9721 tgaactgata gagcggatca cacggaaaaa ttccacccac attaccaatg aaatccctaa
     9781 atagagcgtc caaaatgagc cgggagaaag ggcggcaaag agcaatacta aaagtaagcc
     9841 ggggagtgcc atcactagat cacaaataaa gctgaaaatg cggtcaatcc agccaccgaa
     9901 aaagcctgcc ataatgccgg taattaagcc tgcaattaag gcacaaatca cgctaaacag
     9961 tgataagcca aacgaaagac gaatagcaga ggcaagacgg gcaagcatat cccgcccgag
    10021 atgatcggtg ccgaaccaag cgatttcatt tggattggaa aggatattgg ttaaatcttg
    10081 aaagccaata tccatcgggt aaaaataagg ctgtaaaaag gcaaatccca acattgcaag
    10141 gagaatagtg ccgcctaaat attgtgaaat tgaaattttc atcttgatgt cctatcgctt
    10201 aattcgtggg tcaatccaag cacttaatag atcggcaatg gtgtttaata caacaaacaa
    10261 tccgcccatc acgagcgttg taccttgaat catcggcaca tcacgggcaa tgatggcgtg
    10321 aaccagtgcg tgtccgctgc cgggccaagc aaataggctt tcgaccacca caacgccttc
    10381 aattaaataa actaattgta ctgcgtggta ggcaatgacc ggcacggcaa tattcggcaa
    10441 accgtgacgt aaaaaggtat gccaacggct taagcctttt aattgtgaaa attggtaaaa
    10501 ttctgagcct tttacctgaa ccattgcaga acgggtgact cgtaccgaaa ccgtactcaa
    10561 gccaatcgca agcgttaagg caggcaagat aaaatgttgc caacagccgt atccgccggc
    10621 aggtagccat tttagttgag cggaaaacag cgtaatcaag ccaatcgcaa taataaatgc
    10681 cggcacggag cgaaacaggg tactgaatac cagtgtcaag cggtcaaaaa agccgtttgg
    10741 cttacgggcg gctaacaaac cgagcggagg cccgataagg attgctaaga taagtgccac
    10801 aatcgcaagg cttaaggtat gcccgaattg gtgctgaatt tcagaccaga ccggatcacc
    10861 ggtcaccaat gatttgccta aattaaattg agccaagtca cttagccagc tgaagtagct
    10921 ttgccaccaa ggttggtcta atcccagctc ggcacgcaca gcctcagcag cagcactatc
    10981 tgcttgatca taaccatagc ggctggcagc aatgcggtat gccatatcac ccgaaagttg
    11041 gcgggtgagg ataaatgtga gtgtgccaac cgaccaaatc accagtagaa tttggataag
    11101 acggcggaag agaattttgt gcattgtatt atttcattta ttaaaaagat gattttatgc
    11161 gttctg
//
LOCUS       DANMGB010000077        11074 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.077, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000077 DANMGB010000000
VERSION     DANMGB010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11074
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.077"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            118..621
                     /locus_tag="PXG19_001491"
     CDS             118..621
                     /locus_tag="PXG19_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL6066783.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            637..3498
                     /locus_tag="PXG19_001492"
     CDS             637..3498
                     /locus_tag="PXG19_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL6066784.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            3573..5699
                     /locus_tag="PXG19_001493"
     CDS             3573..5699
                     /locus_tag="PXG19_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL6066785.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            5711..7147
                     /locus_tag="PXG19_001494"
     CDS             5711..7147
                     /locus_tag="PXG19_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL6066786.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            7388..8386
                     /locus_tag="PXG19_001495"
                     /pseudo
     CDS             7388..8386
                     /locus_tag="PXG19_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            8403..9146
                     /locus_tag="PXG19_001496"
     CDS             8403..9146
                     /locus_tag="PXG19_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6066787.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            9301..10359
                     /locus_tag="PXG19_001497"
     CDS             9301..10359
                     /locus_tag="PXG19_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL6066788.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(10480..11022)
                     /locus_tag="PXG19_001498"
     CDS             complement(10480..11022)
                     /locus_tag="PXG19_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6066789.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
BASE COUNT         3451 a         2065 c         2383 g         3175 t
ORIGIN      
        1 caatttaagc tacaaaaaac aacaaaaaac aacaaaaaac acgacaataa gatcgagtaa
       61 tgattatatt atgttataat ttttgaccta atttagaata attatcgagt gcaaattatg
      121 aatcaatctt attttaactt actaggaaac attacttggc tatggatgaa ctcctccctc
      181 cacaaagaat ggagctgtga actactagca cgcaatgtga ttcctgcaat tgaaaatgaa
      241 caatatatgc tacttataga taacggtatt ccgatcgctt attgtagttg ggcagattta
      301 aaccttgaga ctgaggtgaa atatattaag gatattaatt cgttaacacc agaagaatgg
      361 cagtctggtg acagacgctg gattattgat tgggtagcac cattcggaca ttctcaatta
      421 ctttataaaa aaatgtgtca gaaataccct gatatgatcg tcagatctat acgcttttat
      481 ccaaagcaga aagaattagg caaaattgcc tactttaaag gaggtaaatt agataaaaaa
      541 acagcaaaaa aacgttttga tacatatcaa gaagagctgg caacagcact taaaaatgaa
      601 tttaatttta ttaaaaaata gaaggagaca tcccttatgg gaactagact tacaacccta
      661 tcaaatgggc taaaaaacac tttaacggca accaaaagtg gcttacataa agccggtcaa
      721 tcattaaccc aagccggcag ttctttaaaa actggggcaa aaaaaattat cctctatatt
      781 ccccaaaatt accaatatga tactgaacaa ggtaatggtt tacaggattt agtcaaagcg
      841 gccgaagagt tggggattga ggtacaaaga gaagaacgca ataatattgc aacagctcaa
      901 accagtttag gcacgattca aaccgctatt ggcttaactg agcgtggcat tgtgttatcc
      961 gctccacaaa ttgataaatt gctacagaaa actaaagcag gccaagcatt aggttctgcc
     1021 gaaagcattg tacaaaatgc aaataaagcc aaaactgtat tatctggcat tcaatctatt
     1081 ttaggctcag tattggctgg aatggattta gatgaggcct tacagaataa cagcaaccaa
     1141 catgctcttg ctaaagctgg cttggagcta acaaattcat taattgaaaa tattgctaat
     1201 tcagtaaaaa cacttgacga atttggtgag caaattagtc aatttggttc aaaactacaa
     1261 aatatcaaag gcttagggac tttaggagac aaactcaaaa atatcggtgg acttgataaa
     1321 gctggccttg gtttagatgt tatctcaggg ctattatcgg gcgcaacagc tgcacttgta
     1381 cttgcagata aaaatgcttc aacagctaaa aaagtgggtg cgggttttga attggcaaac
     1441 caagttgttg gtaatattac caaagccgtt tcttcttaca ttttagccca acgtgttgca
     1501 gcaggtttat cttcaactgg gcctgtggct gctttaattg cttctactgt ttctcttgcg
     1561 attagcccat tagcatttgc cggtattgcc gataaattta atcatgcaaa aagtttagag
     1621 agttatgccg aacgctttaa aaaattaggc tatgacggag ataatttatt agcagaatat
     1681 cagcggggaa cagggactat tgatgcatcg gttactgcaa ttaataccgc attggccgct
     1741 attgctggtg gtgtgtctgc tgctgcagcc ggctcggtta ttgcttcacc gattgcctta
     1801 ttagtatctg ggattaccgg tgtaatttct acgattctgc aatattctaa acaagcaatg
     1861 tttgagcacg ttgcaaataa aattcataac aaaattgtag aatgggaaaa aaataatcac
     1921 ggtaagaact actttgaaaa tggttacgat gcccgttatc ttgcgaattt acaagataat
     1981 atgaaattct tactgaactt aaacaaagag ttacaggcag aacgtgtcat cgctattact
     2041 cagcagcaat gggataacaa cattggtgat ttagctggta ttagccgttt aggtgaaaaa
     2101 gtccttagtg gtaaagccta tgtggatgcg tttgaagaag gcaaacacat taaagccgat
     2161 aaattagtac agttggattc ggcaaacggt attattgatg tgagtaattc gggtaaagcg
     2221 aaaactcagc atatcttatt cagaacgcca ttattgacgc cgggaacaga gcatcgtgaa
     2281 cgcgtacaaa caggtaaata tgaatatatt accaagctca atattaaccg tgtagatagc
     2341 tggaaaatta cagatggtgc agcaagttct acctttgatt taactaacgt tgttcagcgt
     2401 attggtattg aattagacaa tgctggaaat gtaactaaaa ccaaagaaac aaaaattatt
     2461 gccaaacttg gtgaaggtga tgacaacgta tttgttggtt ctggtacgac ggaaattgat
     2521 ggcggtgaag gttacgaccg agttcactat agccgtggaa actatggtgc tttaactatt
     2581 gatgcaacca aagagaccga gcaaggtagt tataccgtaa atcgtttcgt agaaaccggt
     2641 aaagcactac acgaagtgac ttcaacccat accgcattag tgggcaaccg tgaagaaaaa
     2701 atagaatatc gtcatagcaa taaccagcac catgccggtt attacaccaa agataccttg
     2761 aaagctgttg aagaaattat cggtacatca cataacgata tctttaaagg tagtaagttc
     2821 aatgatgcct ttaacggtgg tgatggtgtc gatactattg acggtaacga cggcaatgac
     2881 cgcttatttg gtggtaaagg cgatgatatt ctcgatggtg gaaatggtga tgattttatc
     2941 gatggcggta aaggcaacga cctattacac ggtggcaagg gcgatgatat tttcgttcac
     3001 cgtaaaggcg atggtaatga tattattacc gattctgacg gcaatgataa attatcattc
     3061 tctgattcga acttaaaaga tttaacattt gaaaaagtta aacataatct tgtcatcacg
     3121 aatagcaaaa aagagaaagt gaccattcaa aactggttcc gagaggctga ttttgctaaa
     3181 gaagtgccta attataaagc aactaaagat gagaaaatcg aagaaatcat cggtcaaaat
     3241 ggcgagcgga tcacctcaaa gcaagttgat gatcttatcg caaaaggtaa cggcaaaatt
     3301 acccaagatg agctatcaaa agttgttgat aactatgaat tgctcaaaca tagcaaaaat
     3361 gtgacaaaca gcttagataa gttaatctca tctgtaagtg catttacctc gtctaatgat
     3421 tcgagaaatg tattagtggc tccaacttca atgttggatc aaagtttatc ttctcttcaa
     3481 tttgctagag cagcttaatt tttaatgatt ggcaactcta tattgtttca cacattatag
     3541 agttgccgtt ttattttata aaaggagaca atatggaagc taaccatcaa aggaatgatc
     3601 ttggtttagt tgccctcact atgttggcac aataccataa tatttcgctt aatccggaag
     3661 aaataaaaca taaatttgat cttgacggaa aagggctttc tttaactgct tggcttttag
     3721 ctgcaaaatc gttagcgttg aaagcgaaac acattaaaaa agagatttcc cgcttacact
     3781 tggtgaattt accggcatta gtttggcaag ataacggtaa acatttttta ttggtaaaag
     3841 tggataccga taataaccgc tatttaactt acaatttgga acaagatgct ccacaaattc
     3901 tgtcacaaga cgaatttgaa gcctgctatc aagggcagtt aattttggtc acgtccagag
     3961 cttccgtagt aggtcaatta gcaaagttcg atttcacctg gtttattccg gcggtgatca
     4021 aataccgaaa aatctttcta gaaaccttga ttgtttcgat ctttttgcaa atttttgccc
     4081 taattacacc gctattcttc caagttgtta tggataaagt actggtgcat cgaggttttt
     4141 caaccttgaa tatcattacg gttgccttag ctattgtgat catctttgaa attgtactaa
     4201 gtggtttgag aacctatgtt ttttctcata gcactagccg tattgatgtt gaattaggcg
     4261 ctaaattatt tcgacattta ttatcactac ccatttctta ttttgaaaac agacgagttg
     4321 gagatacagt cgctagggtt agagaattag atcaaattcg taatttcctt accggacaag
     4381 cattaacctc ggtgttagat ctcttattct cttttatctt ttttgccgta atgtggtatt
     4441 acagcccaaa attaaccttg gtaattcttg gttcattgcc ctgctatatt ttatggtcaa
     4501 tttttattag tccgatttta agacggcgtt tagatgagaa atttgcccga agtgctgata
     4561 accaagcatt cttagttgag tcggtaacag ccatcaatat gattaaagcg atggcggttg
     4621 ctccacaaat gacggataca tgggataaac agctggcaag ctatgtttca tcaagtttcc
     4681 gtgtcaccgt attagcaacc attgggcaac aaggtgtaca acttattcaa aaaaccgtta
     4741 tggtgattaa cctttggtta ggggcacact tagttatttc aggcgatctg agtattgggc
     4801 aattaattgc ctttaatatg ctatcagggc aagtgattgc accggtgatt cggctggctc
     4861 agctctggca agatttccaa caagttggga tttccgtcac tcgcttaggt gatgttttaa
     4921 actctccaac cgaacaatat caaggcaaat tatcactacc agaaataaaa ggcgatatct
     4981 catttaaaaa tatccgcttt agatataaac cagatgcacc aactatttta aataatgtga
     5041 atttagaaat taggcaagga gaagtgattg ggattgttgg acgttccggt tcaggcaaaa
     5101 gtactctgac taaattactg caacgttttt atattcctga aaatgggcag gttttgattg
     5161 atggacatga tctagcctta gctgatccaa actggctacg ccgtcaaata ggtgtagtgc
     5221 tgcaagataa tgtgttatta aaccgcagta tccgagaaaa tattgcgcta tcagatccag
     5281 gaatgccaat ggagcgagta atttatgcag caaaattagc aggggctcac gattttattt
     5341 cagaattgcg tgaaggttat aacaccattg tgggtgaaca aggagcgggg ctttcaggcg
     5401 ggcaacgcca acggattgcg attgctcgag ctttggtaaa caacccgaaa atcctgattt
     5461 ttgatgaggc aaccagtgcc ctcgattacg aatctgagca tattattatg caaaatatgc
     5521 aaaaaatatg ccaaggcaga accgtgattt tgattgcaca tcgtttatcg accgtcaaaa
     5581 atgcggatcg aattattgtg atggaaaagg gggaaattgt tgagcaaggc aagcaccacg
     5641 aattactgca aaacagtaac ggactttatt cctacttaca ccaattacaa cttaattaag
     5701 aaggaaaaca atgaaaatat ggcttagtgg tatttatgaa tttttcctac gctataaaaa
     5761 catttgggca gaagtatgga aaattcgtaa agaattagac cacccaaaca gaaaaaaaga
     5821 cgaaagtgaa tttttaccgg cacatttaga actgattgaa accccggttt ctaaaaaacc
     5881 acgtctaatt gcttatttga ttatgctatt tttagttgtg gcaattgtgc ttgccagtgt
     5941 aagcaaagtt gaaattgtgg cgactgctcc cggtaaatta acttttagtg gcagaagtaa
     6001 agaaattaaa ccgattgaaa acgccattgt acaagaaatt ttcgttaaag atgggcagtt
     6061 tgtggaaaaa gggcaattat tagtcagctt aactgcattg ggttctgatg cagatatcaa
     6121 aaagaccatg gcttcacttt ctttagctaa actggagaac tatcgctacc aaactttgct
     6181 tactgccatt gaaaaagagt ccttgccggt gattgattta tctagaaccg aatttaaaga
     6241 ttcatcggaa gaagatcgac tacgtattaa acacttaatt gaggagcaat acaccacttg
     6301 gcaaaaacaa aaaacacaga aaactttagc gtataagcgt aaagaggctg aaaaacaaac
     6361 aatatttgcc tatgtccgta aatatgaagg tgcaacacgt attgaacaag aaaaattaaa
     6421 agactttaag gcactttata aacagaagtc tttatctaag cacgaacttc ttgcgcaaga
     6481 aaataaatta attgaggctc agaatgagct agctgtttat cgctcaaaat taaatgaatt
     6541 agaaaatgat ctactcaatg taaaagaaga acttgaattg atcacgcaat tctttaaaag
     6601 cgatgtgttg gaaaaattaa agcaacatat tgaaaatgaa cgccaacttc ggctcgagtt
     6661 agaaaaaaat aatcaacgca gacaggcctc gatgatcaga gcaccggttt ccggtacggt
     6721 tcagcaactg aaaattcaca ctataggtgg tgttgttacg actgctgaaa ccttgatgat
     6781 cattgtgccg gaagacgatg tgttagaggc caccgctctg gttccaaaca aagatatcgg
     6841 ctttgttgca gcagggcagg aggtgattat taaagtggaa actttccctt atacacgcta
     6901 tggttatcta actggtcgaa ttaaacatat tagcccggat gcgattgaac aacctaatgt
     6961 aggcttagtt tttaatgcaa ctatagctat agataggaag aatctaacat cgcctgatgg
     7021 gcgaaaaatt gatttgagtt caggtatgac aataactgct gaaatcaaaa ccggtgaacg
     7081 gagtgtaatg agttatttac tcagcccatt agaagaatct gtcacagaaa gtttaaggga
     7141 acgctaatcg aaccaaaaca aagccataaa agccattttg agcttttatg gctttatttt
     7201 ttagtccaca agcggtcaaa aaagcccaat tttttacact tttataacaa attgttctaa
     7261 ctaaaaatta ctaattcttt tcttttataa gacgaatcct ctattttcat ttcattaaca
     7321 ttgaactaga aaaggggatt tatgagccta agcattacga atctttctct tggctaccgc
     7381 aaaaatcagc aaaggcttat ttgaaaagca cggtgtgcag gtggaaaaac cggtgatgtt
     7441 tcgcagctgg gctcagttgg tggaagcctt tttaagtggc aatgtgaacg tggtgcatct
     7501 gctttcgcct atgagtttgt gggcgaaata tggagcaaat gctccggtga aagcggtaat
     7561 gtggaatcac ttggcaggtt cggctttaac ggttcgccct gaaatcaaca gtattgccga
     7621 actctccggc aaaacggtag caattccgtt ttggtattca attcataata tcgttttgca
     7681 acgattatta cgagaaaatg gcttgaaaat caccgaaaaa gagccgaaaa gcggtgaagt
     7741 gcgattaagt gtaatggctc cgtcagatat ggtggcagcg ttggcaagtg aggcaatttc
     7801 cggctttatt gtggcagagc cgttcaatgc gttagcggaa gccaaaggtg tggggaaggt
     7861 gctgcgtttt agtggcgatg tgtggaaaga tcacgcctgc tgtttaaccc taatgcacga
     7921 atacgatatt caacaccgcc cggaatgggt gcaaaaagtg gtgaatgtct taaccgaagc
     7981 ccaagtgtcc acgcttgcca accgtgcaga aaccgctcaa ttattggctc ggggcagcgg
     8041 ctacacgccg cacgatcaaa aagtgctgga aaaggtactg gctccaaccc aagctcagtg
     8101 ggataaatat atcgaaacag gggcaattca aaaccctcag tggcaccaac agcgaatcgg
     8161 tttccaaccg tatccgttcg attcctatat ggaagagctg gtcaaaatgc tcaaacagac
     8221 ccacattgcc ggcaataatg cgtttttaca acagcttgac ccggtagagg cagcgaaagc
     8281 gattaacgag ccgacctttg tgcgaaaagc gattgagcaa ggcggttggg ttgaaacctt
     8341 taatttacaa accggttgga caagaaccga gcaaattagt gtataagcga taggaacgaa
     8401 cgatgaaaca gaaatatatt tacggcttag ccggtttatt actgctactt ttaggttggc
     8461 agcttggcac agccttgtta agccaacggt tgccgatggc gtcaatgtta gctccggcaa
     8521 aaacctggga aagttttact tggctgattt cctccggcga aatttttccg cacttatggg
     8581 cgagtttgca acgcattgct gtcgggctac tcgctgcgtt agtgattggt gtaccgctgg
     8641 gcttattgct cggcttctcc aagcaccttg aaatgctttg cacgccgtca ttccaactac
     8701 tacgtatgat ttcgccactt tcgtggatgc cgattatcgt gatgttactt ggtgtaggcg
     8761 atttgccgat ttatttttta ctggcgtttg ccaccgtttg gtcgttgatt atttccacca
     8821 cctcaggggt aaaaagcatt gatccacaat ggttacaact gggtagagta atgtcggcta
     8881 cccgcaaaga actgctgtgc aaaattgttg taccggctat taccggacac gttctcaccg
     8941 gtttacgtgt ggcggttggg attgcgtggg tggtgctggt accgtgcgaa atgctaggcg
     9001 tgaatcaagg actcggctat tttattttag acacccgaga ccgattagcc tattccgaac
     9061 tgatggcggt aattataatt atcggcttaa tcggctgggc gttggatagc ttaatccgct
     9121 tggctttagc gaaaggcggc agataaattg acaagcggtc gaaaaattgc atttttttgc
     9181 aaaaaatcga ccgcttgttt attcccaaaa agcatattac cttaatttat tttatttcta
     9241 gggcataaaa aagcgattta agatagcgac aaagtaaact aattatacga ggtaaacaca
     9301 atgtcggttc tttcatcttc ttttattcaa tggcttcagc agaacgccga aaatttagat
     9361 caatctaacg aacgagcgga tttactcatt ccacaaattg ccgcactagg gctatataaa
     9421 atcggcgtgc cggaaacgct tggcggcagc ggtggcactt tggttgatgc gatcaaagcc
     9481 gttaccgaac tgggtaatca ctcgctggct gcggcatttg tttcgtgggg acatcgtacc
     9541 tttatcgagc atattatcgc ctcaaaaaat cctattcccc gccaaagcta tttggcggat
     9601 ctgctaaatg gcaatttaac cgcaggaaca ggtttatcca atgcgatgaa atttctctcc
     9661 ggcattgaag agttgaatgt gaatattcgt gaagaaaacg gtaaacgcta tttaaatggc
     9721 cgcctgcctt gggtaaccaa tttacgttca taccgctttg ttgctagttt cgttgccggt
     9781 tttcaagacg aacgcaaacc gctagtgatt gcaattccct ccaccgccaa aggcttaacc
     9841 cgcaccaaag aattggaatt tatcgcattg caaggcacga atactacctc tctcgtattt
     9901 gagaatgtgg aattacaaga tgaatggatt ttggctgatg acgcgcctga gtttttagca
     9961 gccactcgcc ctgcgttctt aggtttacaa tttggtttgc cctttggctt ggttgaacgt
    10021 agtttggcgg aaatcgaaaa atcgctccct ttccgtgcaa ttctcgcctc tgagtggcaa
    10081 gctcaagttg atgccctcaa cgatattaaa actcgtctgt ttaatggctt aaatgaagaa
    10141 ggttattttg tgcgtaatcc gaaagagctt ttccaagcga gaattgacat tgtcaatgtc
    10201 gtcgcccaaa ctattctgct agaactgcaa gcgagtggcg gacgtggcta tctgaaaaat
    10261 gatacttcag gcttcagccg ccgttggaaa gaagcggcat ttctgcccgt tgttacgcca
    10321 agtgcggtac agctgagaat ggtgctggcg aatagttaag cggataagag acaaattgtt
    10381 gcctctttta ttttgcaaaa aatagtctaa atataaccgc ttgcaataaa aataaaaaag
    10441 gatgcatttt ttatgcttcc tcaattttac ggctatctat tatgcaaaag gctgcaattc
    10501 agggttaatt ggaatttcgg caatgttgtt aacgtagtta cataatgttg ccaagctcac
    10561 gcctaaaatc acatcaatcg cattttgttg gttgtaacct gcggcaaaaa attcgtttaa
    10621 ttgggcttcg gttaatttgg ctttttgtaa cattactgca agggtgaagc gagccagagt
    10681 gtctaatttg ttatcgtcta tgcgagccgt ggcacgtaaa gcatttacca cttcttcagg
    10741 catttttaat gcttttaagg cgattttagt atgacctgcc acgcagaaac cacagccgtt
    10801 gaccactgct gcggtgattt gtaccacttc acgttcttca gcggttaagc tgttacgact
    10861 attaatacca cccacagtgc ggtaagtttc cagtgctgtt ggtgcgttgg ctaatacgcc
    10921 gatcagattt gggataaaac cgtttgcttg ttgcactgct tttagggctt cttgtgccgt
    10981 ttcaggagcg gattcaatag tgtgaatttg aaattgagac ataaatgttc cttatcaggt
    11041 tgtttattgg tgtggctcat cataaagaaa aggc
//
LOCUS       DANMGB010000078        11001 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.078, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000078 DANMGB010000000
VERSION     DANMGB010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11001
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.078"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            16..1098
                     /gene="serC"
                     /locus_tag="PXG19_001499"
     CDS             16..1098
                     /gene="serC"
                     /locus_tag="PXG19_001499"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL6066790.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1155..2132)
                     /locus_tag="PXG19_001500"
     CDS             complement(1155..2132)
                     /locus_tag="PXG19_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL6066791.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2244..4811
                     /gene="glnD"
                     /locus_tag="PXG19_001501"
     CDS             2244..4811
                     /gene="glnD"
                     /locus_tag="PXG19_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL6066792.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            complement(4988..5746)
                     /locus_tag="PXG19_001502"
     CDS             complement(4988..5746)
                     /locus_tag="PXG19_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6066793.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
     gene            complement(5766..6642)
                     /locus_tag="PXG19_001503"
                     /pseudo
     CDS             complement(5766..6642)
                     /locus_tag="PXG19_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            complement(6695..7663)
                     /locus_tag="PXG19_001504"
     CDS             complement(6695..7663)
                     /locus_tag="PXG19_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6066794.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            complement(7757..8656)
                     /locus_tag="PXG19_001505"
     CDS             complement(7757..8656)
                     /locus_tag="PXG19_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6066795.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            8830..10293
                     /locus_tag="PXG19_001506"
     CDS             8830..10293
                     /locus_tag="PXG19_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6066796.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            10283..10588
                     /locus_tag="PXG19_001507"
     CDS             10283..10588
                     /locus_tag="PXG19_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL6066797.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            10588..>11001
                     /gene="nrdR"
                     /locus_tag="PXG19_001508"
     CDS             10588..>11001
                     /gene="nrdR"
                     /locus_tag="PXG19_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL6066798.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIE"
BASE COUNT         3570 a         2151 c         2253 g         3027 t
ORIGIN      
        1 tatacgaggt gaaaaatgac agagatatat aacttcagtg ccggcccggc aatgatgccg
       61 aaaaaagtac tcgaaaaagc gcaacaagaa ttattaaatt ggctagacca aggcacatca
      121 gtgatggaag tcagccaccg tggaaagcta tttatggagc tggcggcaca atctgaagca
      181 gatttacgca agctgtataa tgtgccggac aattatcgta ttctatttct tcaaggtggt
      241 gcaagggggc aatttgcagc cattccaatg aatttaatcg gtaaaaaagg caaagcgctt
      301 taccttaatt cagggcattg gtcggcaaca gcagcaaaag aagcacgtaa ctttgcggaa
      361 attgatgaaa tcaatatttt agagactgaa ccgcaactta aagtgagtcg tttagatttc
      421 agcgatattg cagagcaata tgattatatc cattattgca ccaatgaaac catcagtggg
      481 gtagaaattt tcgatattcc gaatgtcgga aataccccgt tagtggcaga tatgtcgtct
      541 aatatcttag cccgagggat tgatatcaac aaatttggag taatttatgc cggagcgcaa
      601 aaaaatctag ggcctgctgg cattacgatt gtgattattc gtgatgattt aattggcaat
      661 gcacgcaaag ataccccatc tatttggaat tatgcaactc agcgagatgc tgattcgatg
      721 attaataccc cgccaacttt tgcttggtat ttatgttctt tagtgttcca acatttactg
      781 gcagagggtg gtttgaaagc tactgaagaa cgtaatcttg ctaaagctac attgctttat
      841 gagtatttgg atagttcaac attctattac aatacggtag cacacgaaaa ccgttcctta
      901 atgaatgtaa cctttaccac gggtaatgac gagctaaatg caaaatttgt ggcagaagcg
      961 accgcttgtg gtttacaggc attgaaaggc cataaagtat taggtggaat gcgtgcctca
     1021 atttataacg caatgccgat tgatggggta aaagcactca ttgaatttat gaaggtattt
     1081 gaacaacgta atgcttaatt caagcttaag aatataaatt aaagagccac gtttgtggct
     1141 ctttgaattt ggcactagcc cgcagtttta aacaaataga aattatagcc tacataagcg
     1201 gcaaagagta ataagccctc taaccgatta attctgccac cttctgtccg acgatagagg
     1261 ttgatcccga aaatgaataa taagaaggtg agagccgaca tcatcaagac atcgcgagaa
     1321 aacacttccg ctgaaacttg cattggttct atagcaccgg caatccccac cacggctaac
     1381 gtattaaata agttagaacc gataatgtta cctaaagcta aatccacttc tcctttacga
     1441 gcagctgcaa tagaagaggc taattcaggt agtgaggtgc ctaccgccac aatagtaagc
     1501 ccgattacca aatcactcac accaaaaaat ttagccactt caactgctcc ccagactaag
     1561 aattgggaac taattactag cgatactaaa ccaataatta gccaaagaat ggattttcct
     1621 aatcccatct tagcactatt ggttaattct gcatcaacat ctaagcttaa tgcatcattt
     1681 ttacttttca ttgcggtaat aattgtccac gccatatata caaaaaacac agcaagtaaa
     1741 ataatcgcat caagttgagt gacgtttgca tcataaacca aataagcaga aagcagggtg
     1801 acagccagta aaatcggcaa ctcttttttt aacacatcgg aattaactga tagtggttta
     1861 attattgcgg ttaaacctaa aatcagcgca atattggtaa tgttagaacc gtaggcatta
     1921 ccgagagcga tacccggcga tccgcttaat gcagaagatg cagatacgag catctccggt
     1981 gcagatgtac caaaaccaat gaccacaata ccgattaaca atggtgtcat accaaaatgg
     2041 cgagccgtag aggctgcccc ttccacaaaa cgatccgcac tccaaactaa tataattaag
     2101 ccaccgataa tagcggcaac agcaagtgtc ataaactatc cttttagatg aaaaacataa
     2161 aggcattata agcattttag ccaaaataaa tataggcaaa cgaaaataaa tgacctatta
     2221 ttttgccagt ttaggaagag attatgatga aaaacagcaa cgaattaaaa acgcttttat
     2281 cagcatttac ggagcaacag cggcaagcat ttcaatccga aaatgtactc agcttacttg
     2341 cacaacgtag ccaattttat gaccaactac tgcaagcact ttggcaagat tttggactcg
     2401 ctcaatatga acatattacc ctattagcgg taggggggta cggacgtgag gagatgtttc
     2461 cgctttcgga tctggatatc ttagtgttaa ctgaaaaacc gctagaagag gctattcagc
     2521 agcgtttaaa cgaactattt gccttgcttt gggacagcaa actgcaactt ggcaccagtg
     2581 tgcgtacgct cgaagaatgt attcagattg ggaaagcaga aatttcggtt gccactaata
     2641 tgttggaagg gcgattttta ttgggtaata aatcgctttg gctaagatta aaagaagcac
     2701 tttatcagcc ggatttctgg gatattaaag cgttttttag agcgaaaatg gcggaaaaaa
     2761 atgagcgtta tgcacgttat cataatacta gctataacct tgagccagat ctcaaacata
     2821 gcccgggagg attgcgagat ctgcatttaa tctcttggat tatgctacgg cattatggtg
     2881 tatcttcttt tgtcgatctc ctcaataaag ggctacttta cccggaagaa tataaggagc
     2941 tgatcgcagc acaagcggta ctttttcgga tgcgttttgc acttcatttg caactgaaac
     3001 gttacgataa tcgccttcgg tttgacagac aattacaact gagtgaaata ttaggctacc
     3061 aaggcgaagc aaatcaagcg gtggaattaa tgatgcgaga ttattttcaa gccacaaaat
     3121 ctatttcgca actgagccaa ttattgttaa acagttttga acaagcctat gtaaacgagt
     3181 tgcaaaaaaa tgcacaaaaa caaccgcttg atcagtattt ttatcggcaa gaacagcaat
     3241 tgtttgtggt cgaacgcaaa atatttaaaa cccaacccac aacaatgttg gatctctttt
     3301 ttcatcttac taatgaccct acgttaatag cgaatgccga caccttacgt cagttgagac
     3361 tgtgtttaca gcaacaacac gagcctatgt gctttttgcc tgaaatgcga gagaaattcg
     3421 tacagctttt tgctcaaccg aaagtcataa gccgagcaat agttccaatg caccaactgg
     3481 gttttttaag tgcttatcta ccgcaatgga aggggatcga agggctaatg caattcgacc
     3541 tattccatat ttatacagtc gatgagcata cggtcagagt catgttaaat ttagaaaatt
     3601 ttagcgaaga tccaagtcgg gcgtttttcc cactatgtca tcagctattt gcaacgcttt
     3661 ctgagaaacc gttgctctat cttgcggctc ttttccacga tattggcaag ggtagagagg
     3721 gcgaacacgc tcaagttggt gcgctggata tgcgagaatt tgcggaacta cacggttttt
     3781 ctcaagcaca aatcaatgat atggtttggc tggtggcaga gcatttgaca atgtcgatca
     3841 ccgcacaaag acgagatatc cacgatccgc aaatcatcag cgaatttgca aaaaaagtgc
     3901 aaaatcagac cgctttatct tcactacttt gtttaacggt tgcagatatt tgtgcaacca
     3961 gtgagagcct ctggaatgat tggaaagcct cgctgtttac ccaattatat caatttacgc
     4021 tacagcaact ggctcaaaat ttgaattatc aagcagtggc acaagagcat cgcttgcaag
     4081 cattagaact gatgaagttc gtgctttcag ctgatgagcg aatagcatta aacgcatttt
     4141 ggcaaccttg cccggagcgt tattttcttc accatacacc gactcagttg gtatggcacg
     4201 ctctgcatta tgtaaaaact cgccggttgc cgatggtttt aatcagtaat gaatatgccc
     4261 gtggtggtac agaaattttt gtatgttgcc aagatcaacc tcaactgttt gctcgaatcg
     4321 cccaattact cagccaaaaa cgcattagca ttcacgatgc acaaattatt actactgaaa
     4381 atggtgtagt gttagacagc tttattgtaa gtgagcgtga tggtgatgat gatttaaccg
     4441 atgagagatg tatgcaaatt cagcaggcga tgatgaaaat gttaagctta actgaaacag
     4501 gcataaaatt taccaaaaaa ccggtgaaac atttgtcatt taagcgtaaa actcggctgc
     4561 gttttcttcc tccgtcatca aagcaacaaa ccgaatttga actttttacc ttggatagag
     4621 aagggttgtt ggcacaaata ggctatattt ttaaccggct ccgattaaat ttaattaatg
     4681 cgaaaattac gactattggt gaaagggtag aggatttctt tgtggtcagt aatgatcaag
     4741 gaaaagcttt atcggaacaa gaacagttag aactaaaagc cattctaatt accgaactag
     4801 atagtgaatg aaaacaaccg cttggagtga agactgcaag cggtaaattt ttcaacgttt
     4861 taggtaaatt aaatcacgag ttaagagagg ttgagaattc aagaaattag aaactaaata
     4921 taagtttcta tcgtttagat taataaatta agacgcaatt tttattaatt accatgatct
     4981 tcaaacgtta aatatgatga ataactaaag gtttgccttg gcattctaac acttcggcat
     5041 caagattaaa cactgttttt aaattttcag tggtgataat ctcttttggg gtgccgatca
     5101 tcttaattcc accatctttc attgcaataa tagtatctgc gtaagcagca gcaatgttga
     5161 tgtcgtgtac caccattata gtagttaagg cgagttcatc ggttaatttt cgtaataatt
     5221 tcattaattc ccgagcatgg aacatatcta aattattcag tggttcatct aataagatat
     5281 gatcggtttg ctgacagaag gtcattgcaa ttaatgcccg ctggcgttgc cctccggata
     5341 attcatttaa gaatcggtgg gagaaagtcg ataaatcaaa tcgtaccaga gcctcttcta
     5401 caatggcatt atcgtgcgaa gtgattctgc cttgatgatg agggtaacgc ccaaataaca
     5461 gcagatcttt gacggtaata cggctatgaa tcacattatc ttgggtcaag atagccagtt
     5521 gtcgagcgat agtttgagaa gctgtgttgg ctatattcag ctcatttaag tggatttcac
     5581 cctgttggat aggttgcaag cgtgcaatta aagagagcag ggtggatttg cccgcaccat
     5641 ttgctccgat taaagcggta ataccaccat ttggaatggt taaattgata ttattcagaa
     5701 tcgtggcatt cccgattttg tggtgaagat ttttaaccgt tatcattttc ttccttaatt
     5761 tatggttatt ttttccgttt taaaatgaga taaataaaga caataccgcc aataaattca
     5821 ataacgacac tcagaacccc ttgcattttc agcacttgct cgaagattgc ctgccctaaa
     5881 attaaggtga tggcagagat taaaaaagtc attggtattc gcacgctatg gcaaacagtc
     5941 gggctaattg cattaacaat ggcacaaaca agtagcccta gaaatagaat cgggccaaca
     6001 agtgcggttg aaacagacac caacaatcca caacagatta gtaattgacg tgaaaattga
     6061 tgatattcta acccaagccc aattgcctta tctttgccaa gtaacaaaat atctaattta
     6121 tgccgttgta accagaccca aatggcagag agaatagcga tacagcctcc aatccaaagt
     6181 aatgtggggg tagtcaggtt aaatgaggca aagaagagcc ttgagcaacg gcaaactctg
     6241 ttgggtcgac attcgttgca acaaattatt taggcttcta aataagacac caaagatgac
     6301 accgattaaa agcattcggg ttaaatcgga tcgatttcga ttcagtgaac taaatagtaa
     6361 tattgatgcc cctagcatta acaaggtttc aaagaaaaac ttatagcttg ggtctaactg
     6421 agtaaagcct aaaccgccaa ataaaaatac taacgaggtt tgcaatagca agtagagcga
     6481 atcgaacccc aaaatacttg gagttaaaat aggattatgt gtgagtgttt ggaatagcag
     6541 ggtcgaaata ccaatcgtat aagcaatagt acagagcaaa ataagctttt tgccacgcag
     6601 ttgcaatata aagtcccaat tacctttcgc attataggtc atataaaaca gaatacttgc
     6661 taataagatt aagcttaaaa cgataaagcg tgatctaacc acgagccttc tcctcagccc
     6721 gtttctcttt gagcaataaa tagaggaaaa tcactgtccc aataatccca aaaatagtag
     6781 aaatcggcac ttcataaggg gcattgatgg ctcgccctaa aatgtcacaa atcaggacta
     6841 aattcgcacc taacaccacg accgcaggca gatttttacg caatcggtca cctgctatgc
     6901 gagagacaat attagggacg accaagccga taaacggaat ctgtccaacc gtcaccacga
     6961 caatagcggt aatcatcgcc accacaatta aggcaagcca agtcatttgt ttgtagttaa
     7021 tgcctaagtt ggtactaata ttttcaccaa ggcctgcaat ggttaattga tctgccatca
     7081 cataaaccac aacagccaga atagcggtaa tccagagcag ttcataccga cctgccaaaa
     7141 taccggagaa gtcgccggaa aaccaaatcg aaagcacttg taggctgtca gtttcataag
     7201 caataaaagt gctgatagct tcaataacat tgccaaaaac gatcccgatt aatgggagca
     7261 ttaattgttg atgaggcggt aattgacgaa tgagcaacat aaaaagcccc attcccatta
     7321 atgcacttaa tgtggcaata gacattttta acagtaatgc tgatgttggg aaaagtaaac
     7381 tagcaagtaa aataccaatt gccgcacttt ggctagtgcc aatcatacta ggctcaataa
     7441 agcggttctt cagcacaatt tgtaatacca tacctgcaac ggctaaggtt gcaccgacta
     7501 atatcactgc gagcgttctt ggtaaacggc tgataaaaaa gatctgactt tgttcggaag
     7561 aatgaaaaat ttcactccaa tgaaaatctg ccacacccac actggcactg attggaatga
     7621 gcaatattaa aagaaataga tttaatctaa aaaaagagaa catagtgata aatagcaagc
     7681 ggtcatattc tctctctttt ttacaaatgc aggcacttgc aaaaatagga ggaaatctga
     7741 ccgcttgtaa ggttaattat tttttctcaa atgctgtttt aatgttagtt aggtcggttt
     7801 tcatctgctc ataaccaccc ggcgctaaat atgaggcagc acttagataa acgatattac
     7861 cgtttttcca agctttagtt tgacgaacta attcattatc caacacttgt tgggctgatt
     7921 gaccttcttg tccgatagcc gcaatacggt ctaacacaaa caaccaatcc ggattgagtt
     7981 tttggataaa ttcaaacgaa acaggctgac cgtgaccggt atttttaatg ctagaatctg
     8041 ccattggaat ccctaaatta tcgtgaatcc aacttaaacg ataacctgaa ccaaatgcag
     8101 aaattttgcc accattgact aaaataatca gtccgttacc tttacctttt actgctgctt
     8161 tggtttggtc taataaagta ttaatttctg cttttagttt ttcggtttcc gcttctttat
     8221 taaataattt gccgaaagaa tcaagacgct gtaatccgct ttcgattaat ttatcgccat
     8281 tatccgtcat gtcgatggtt ttcgcaattt ggctgacttc atcaaatttt tttgctgtgc
     8341 gtgtgccaac aatgatcaaa tccggattta aagaatttaa cgcttctaaa tccggctcaa
     8401 ataccgtacc gacattcacc gctttgtctg cactcggttt aagataagaa agcaccttaa
     8461 attcaggcat accgtcaatt tttacaccta aggcttgtaa agtatccaaa cttccggtgt
     8521 caaacacggc aattttagac ggggtttctt tgaaagtaac ctctccacgt gcagttggaa
     8581 tagtaacatc tttggcaaat gcagaagcag caaacacagc agttgcggtc aatgcaaaca
     8641 aggctttttt aatcattgga taactccatt tatattgaaa ataattctca aagattttaa
     8701 cgaaaattga ttttaagtaa agcggaaaat aacaagcggg cgaattttgc ctaaaatttg
     8761 caaatttcaa tttaattaaa attccgatac actatgtaca tcaatacgtc attatagcaa
     8821 gagaaaaata tggcagaata tagcggaaca acccaagaga agatgaaaga taagcaggtt
     8881 gagcaaatta atatctcacc acattcgatt gaggcagagc aagcggtgct tggtggcatt
     8941 atgctcagta atgatcactg ggataatgtt gctgagcgtg tacaaccgca cgatttttac
     9001 aactatgcgc atcgaattat ttttgaacaa atggcggagt tggtgcgcca caataaaccg
     9061 attgatatta ttacgctgga tcaagcctta aaagacaaag gggtgctgca agatgtagga
     9121 ggttttgcct atttagccga gctttctaaa aataccccga gtgcagcaaa tattttagcc
     9181 tatgcggata ttgtgcgaga tcgttccgat ttaagaagtg taatcagtgc cggcaatcaa
     9241 attgcggaaa tgggctacaa aacgaaaggg cgtaactcca aagaagtgtt agacgaggca
     9301 gagcgaattg tgtttgaaat tgcagaaaaa cgcaataacg ccaatgaagg tccacaacgt
     9361 attgacgata ttttgcttaa aacactcgct cgaatggata cgctatctaa aaatcgccat
     9421 aacggcggag ttactggtgt ttctaccggg tttgttgatc tcaataaaaa aaccgcaggg
     9481 ttacagcctt cggatttaat cattgtggca gcccgtcctt caatggggaa aactactttt
     9541 gcaatgaact tatgtgaaaa tgcctcatta gtggatattg aagataaaga tgatttagac
     9601 gaacagggta atccgaagaa aaaaccggca aagccagtgc taattttcag cctggagatg
     9661 ccggcagacc aaattatgat gcgtatgctt gcctcacttt ctcgggtcga tcaaaccaag
     9721 atccgaaccg gtcagatttc agatgatgaa gacactgcta aaatctccag cacaatggca
     9781 attttacaag aacgtaataa tatctatatt gatgatagct ccggtttaac accgaccgaa
     9841 ttacgttctc gagcgagacg gatttatcgt gaaaatggcg gattaagctt gattatggtg
     9901 gactatctcc aattaatgcg agcgccggga tttgcagata atcgtacttt agaaatcgca
     9961 gaaatttccc gttctttaaa ggcactagcg aaagaattag aagtgccagt agtcgctctt
    10021 tctcagctaa accggagttt ggaacaacgt gccgataaac gtccggtaaa ctcggatttg
    10081 cgtgagtcag gttctattga gcaagatgca gacttaatta tgtttattta tcgtgatgag
    10141 gtctataacg acaattccga tctgaaaggc attgcggaaa ttattatcgg aaaacaacgt
    10201 aacggcccga ttggtcgggt gcgtttaacg ttccaagggc agtattcccg ttttgataat
    10261 tacacaggag ggcattatga tgatgaatac taaaccaacc cagccaatca cactttgtgc
    10321 gatttatcgc agtaaggcaa aagaaggaat gtatttatat gtgcctaagc gtgaccaatt
    10381 tgagcaagtg ccggaaacat tacgccagtt atttggtaag cctgaatttg tgatgatgtt
    10441 taatttaacc ggtgaaaagc cattggtgcg tgctaaaaac gaagaagtgt tacaattact
    10501 tatagagcaa ggctactatt tgcaaatgcc acctccgccg gagaatttgc ataaagcctt
    10561 tatcgcacaa cagaaagggg aaaaataatg cgctgcccat tttgttccac tgaagaaact
    10621 aaagtgatcg attcacggct tgcagcaagc ggttatcaaa ttcgccgccg ccgtgaatgt
    10681 ataagctgta aagaacgttt tactaccttt gaatcggccg aattagttgt gccttatgtg
    10741 atcaaaaata atggtagccg agagccgttt gatgccgaaa aattaagaac agggttaaga
    10801 cgtgcattaa ataaacgccc tgtcagtgct gatgatgtcg aaaaagcaat tagccaaatc
    10861 attattcagc tgcaagcgat gggcgaacga gaagtgccga gtcgccatat cggtacattg
    10921 gcaatgaacg cacttaaaca attagacaaa gtagcatata tccgctttgc ctctatttat
    10981 ttaagcttta gtgatattga a
//
LOCUS       DANMGB010000079        10982 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.079, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000079 DANMGB010000000
VERSION     DANMGB010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10982
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.079"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(13..1302)
                     /locus_tag="PXG19_001509"
     CDS             complement(13..1302)
                     /locus_tag="PXG19_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL6066799.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1426..2223)
                     /gene="ccsA"
                     /locus_tag="PXG19_001510"
     CDS             complement(1426..2223)
                     /gene="ccsA"
                     /locus_tag="PXG19_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL6066800.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2439..2963
                     /gene="yceD"
                     /locus_tag="PXG19_001511"
     CDS             2439..2963
                     /gene="yceD"
                     /locus_tag="PXG19_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL6066801.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            2980..3150
                     /gene="rpmF"
                     /locus_tag="PXG19_001512"
     CDS             2980..3150
                     /gene="rpmF"
                     /locus_tag="PXG19_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL6066802.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3169..4191
                     /gene="plsX"
                     /locus_tag="PXG19_001513"
     CDS             3169..4191
                     /gene="plsX"
                     /locus_tag="PXG19_001513"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL6066803.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4288..5571)
                     /gene="hisD"
                     /locus_tag="PXG19_001514"
     CDS             complement(4288..5571)
                     /gene="hisD"
                     /locus_tag="PXG19_001514"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL6066804.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5583..6482)
                     /gene="hisG"
                     /locus_tag="PXG19_001515"
     CDS             complement(5583..6482)
                     /gene="hisG"
                     /locus_tag="PXG19_001515"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL6066805.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6515..6642)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6841..7698
                     /locus_tag="PXG19_001516"
     CDS             6841..7698
                     /locus_tag="PXG19_001516"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL6066806.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7839..9320)
                     /gene="ilvC"
                     /locus_tag="PXG19_001517"
     CDS             complement(7839..9320)
                     /gene="ilvC"
                     /locus_tag="PXG19_001517"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL6066807.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9542..10777
                     /locus_tag="PXG19_001518"
     CDS             9542..10777
                     /locus_tag="PXG19_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL6066808.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT         3267 a         2456 c         2074 g         3185 t
ORIGIN      
        1 tttttcttaa aattaggctg aatcttgctc tttttcaatt ttcggtgaaa gatgttcaac
       61 tttcgcttgt ttaaccatat tttcactcac ttcaagaatc atcactttca agttgtagag
      121 ttcaaattcc attccttcat caggaatttt ttctaaatgc tctaaaatca agccgttaaa
      181 ggttctggct tcctcaagcg gtaaatccca atcaaatagt ttgttcagat cacgcaggtt
      241 ggctgagcct tcaataatca ccgtaccatc tgattgttgc tgaacttctt gctcaagggt
      301 cggtgctgat gaagtcgtaa attcacccac aatttcttct aaaatatctt caagagtgac
      361 tagcccttta atatcaccat actcatcaac cactaaacca atacgctctt tattcgcttt
      421 aaagttcatt aattgtgtag tgagtggtgt gccttcagga ataaaataga cttcatctgt
      481 tgcacgcagt agcatttctt tggtaaattc gtttttctcc aacattaaac gaaaggcttc
      541 acgcacccgc aaaatcccaa caatattgtt gtccatatcc cctttgtaga taatcacccg
      601 agcgtgaggg gcgtgattaa gctgacgcat aatcgctttc cagtcatcat caatatcaat
      661 gccgctgatg tcgttgcgag gcaccataat gtcatcaacc gtcacttttt ccatatctaa
      721 aatagagacc aacatttcac ggtgttcggc aggaataaat ttaccggcat caagcactac
      781 actacgcagc tcttcggagc ttaagccttg tttatctttt tgttgaatcc gcaataattt
      841 catcagcccg gcaataatca aattcattaa aaatacaatc gggctgagta attttttaag
      901 cggtgttagc acaaagctgg cgaaaaaacc gactttttca gggtaaattg ccgctactgt
      961 tttaggtagg atttccgaaa aaaccaacat tacaaaagtt agcaaaccgg ttgcaattgc
     1021 cacaccggct tcaccggata actgcatacc gatcatcgtt gcaatcgcag aggcggcaat
     1081 gttgactaag ttattacaaa ttaagataag gctaagtagc acatcggtgc gtgccaagag
     1141 tttttccgcc agtttcgccc ctttatgccc ttgctcggca aggtgacgca ttttgtagcg
     1201 gtttaaagac atcaagccgg tttccgagcc tgaaaaaaat gcagagagta ctaaaagaat
     1261 agctaaggta ataaataaac tactcagggg aatactgtcc aaaattcaat tcctatgtaa
     1321 attaatcata aaaggtagcg taacactaaa agcgttgtca ctacctcact ttgtcggttc
     1381 agccgacttg caaaaaattt tgcttttttg accgcttgta gatcattaat tgacgatcaa
     1441 acgactaccg aaatagccga tggtgagcaa catcataccc gaaatcgaat aaataagcac
     1501 ccgttttcca cgccaatgta atttccactg tccaagtaac tgaatgctat aaacaagcca
     1561 agctaaaaag gagaaaattg ctttatgaat atgctccggc tcgaaaaagt tatgcaaata
     1621 aaccacaccg gaaaataaag tgagcgtcag catagcttgt gcagctaagg ttaaagtaaa
     1681 gaaatggcgt tcaaccgtca ttagcggtgg tagaatctgg caaaagaaca ttgttttgct
     1741 ctttagtttt ctatccagcc atttgagttg aaaagcataa attaatgcta aaaagaagag
     1801 agcataagaa aataatgcaa tccctaaatg gaaaagcagt cccgcatttt cttgcacatt
     1861 acggataaaa ctacctttta caaatccagc cacccccaca ctacaaatgg cgaaagagta
     1921 cacaataatt aaaggaaacc aaaccgtttt ccattttaac aacgcaagtg tgacacaagc
     1981 cgccataatg aaactcatca aagagattac atttgttacc gtaaaattct gcccttcgat
     2041 taaaaataat tcattatata acacagaaaa atgcaaaatc gtggcaagta acccaaaccc
     2101 aaagactaac atcatattag gctttttatt aactgttgcg gcattttcta aattcactag
     2161 agtaggggca acccaaagta gcgctagagc gtaagcaaca atggataaaa gaggaagtaa
     2221 catattgtct cgaatctcgt caaataagaa taactatcag aattttaatc aaaagtaacc
     2281 gttttagcta gtttttgctg ttgctagatc aaaaattatc ctaaaaaatg tgcttttcgc
     2341 cttaaattga accctacctt ttctcggtaa gattatctca ctgaaaacaa taattttcct
     2401 ttgactaatt tgctttctat ctgtaatatg cacaccctat gcaaaaggta aaactacccc
     2461 ttacgattga cccttacaaa gatgctcagc gtcgcgttga ttatgaaggc tacatttcag
     2521 gtaaacttct aacacgcttg ggtgaatcag tatgtaatgt gcaaagtgat gcacaagtca
     2581 ctctctcgtt atatgtcgat ccacaacgcc taactgtgat taaaggcaca gcaaaagtag
     2641 atgtggaatt tgattgccaa cgatgtggtg acccgtttac acaaacgctc gactgttcat
     2701 ttgttttcag tccggtgtct aacatggatc aggcggacat cttgcccgaa atttatgaac
     2761 ctatcgaagt aaacgagttc ggtgaagtaa atttactaga tatgattgaa gatgaattta
     2821 ttcttgaatt acctctagtc ccgatgcata gtgaagaaca ctgtgaagtg tccgtaagtg
     2881 aacaggtatt tggcgagttg ccggaagaac tggtacaaaa accaaacccg ttcgcagtat
     2941 tagctaattt aaagaaaaac tagatctagg agaaagcccg tggctgttca acaaaataag
     3001 aaatctcgtt cacgtcgtga tatgcgtcgt tcacacgatg cattaacaac tgcagcagtt
     3061 tcagtagata aaaccagtgg tgaaactcac tttcgccacc acgtaactgc agacggttac
     3121 taccgtggtc gtaaagtaat caacaagtaa ttcctttcga ggtttatctt ggttgatatc
     3181 actcttgcag tagatgtgat gggcggggac tttggtcccc gcgttactat tcctgcactg
     3241 gaaaaagcct taaaacaaaa tccaagcctt tcttttttat tatttggtga tgaacaccaa
     3301 atagcccctt tattacaaaa acacacacta ctcaaccacc ccaaaatcca aattcatcat
     3361 accgaacaag tgattgaagc tgatgttccg ttcactactg caatccgcca aagcaaaaac
     3421 agctctatgc ggttagcgat tgaggcagta aaagagggca aagcacaagg ttgtgttagt
     3481 ggcggtaaca ctggtgcgtt aatgggattg gcaaaattat tgattgaacc attaccaaat
     3541 attgaacgcc ctgcactcac ttcgctaatt cctaccctca acggcaaatc cagcgtaatg
     3601 ttagatttag gggcaaatat tgaagtaagc aatcaccagc tacaacaatt tgcagaaatg
     3661 ggaaacctgt ttgctcaagt aatgcttgat ttagtttacc ctcgcctgtc tttattgaat
     3721 attggtacag aagaaaataa aggcacggca caacttcagg cagtgcatca actgctgaaa
     3781 aacagacaag acttaaatta caccggcttt attgaaagcg ataaattaac cagctatctc
     3841 actgatgtga ttatttgtga cggctacacc ggcaatatcg cgttaaaagc gttggaaggg
     3901 gcagctaaaa atattatttc tctctttaaa aaagagaaag ccgattccaa tatttgccgt
     3961 aacaccaaac gatatttact gaaagcgatg ttctaccgtt actaccgcaa attgcaacaa
     4021 attaaccctg accgccataa cggtgcgacc ttgctcggct tatctaaagt agtcgtgaaa
     4081 agccacggcg gggcaaatat caatgccttt tattacgcta ttgattatgc ggtgcaacaa
     4141 attcaaggcg acattccaaa taaaatccta gagggtttaa cccaaaaata agcgaactca
     4201 actgttcgct tattttcatt tcttgtttca cttaaagata caagcggtca aatttgcaaa
     4261 aaaatttacc cattcaaccg cttgtgttta gccttttaat tttgccactc gtaaactaac
     4321 cgcattgcgg tgtgcatcta gcaattctgc acttgccatt cgttccaccg tttcggccaa
     4381 ggctagaaag ccttgtggtg tcagctcctg caccgtcatt cgcttgctaa aatcagctaa
     4441 acctaagctc gaataggttt tagtgtagcc gtaagtcggt aaaacgtggt tagtgccgct
     4501 agcataatcc cccatacttt ccggcgaata cgcccctaag aaaatcgagc cggcattatc
     4561 taaatccgcc aacaacgagc gagcattttc agtttgcaca attaaatgct cgggtgcata
     4621 tttattacta atttcgaccg cttgttgcag gttttccgca ataaaagtgc gactgtgagc
     4681 caatgcttta cgggcagttt cggcacgagg taaaaccgcc acctgctttt ctaattcttc
     4741 atcgactgcc cttgccaagc tctcacttgg tgtgactaaa atcacttggg aatcggctcc
     4801 atgttctgct tgagagagta aatcgctcgc cacaaatgca gggtcagcaa actcatcggc
     4861 aatcaccaac acttccgacg ggcctgccgg catatcaatc gccgtgcctt cttgcacaac
     4921 ttggcgtttc gcctccgtca caaacgcatt gcccgggccg aaaattttat ccactttcgc
     4981 taccgtttgt gtgccatttg ccatcgcaat aatcgcttga gcccccccaa ctgcgtaaat
     5041 cgtttccacc ccacacaaat gggcggtgta gagaatttca tcggcaatcg gcggtggtga
     5101 gcaaagcaca atcttgttac aaccggcaat ttttgccggc actgcaagca ttaacacggt
     5161 agagaaaagc ggggctgaac cgcccggaat ataaagcccc accgcattaa tcgggcgagt
     5221 gatgacttgg caacacaccc ccggctgggt ttcaatatcc acctcttgat tttgctgtgc
     5281 cttgtggaaa gcctcgatat tcgctttcgc attttgaatc gcttgcttaa gctctggtga
     5341 aatacggctc tgtgcttgct gaatctgctg ttctgataca actaagctct ctaattttac
     5401 tttatcgaac ttttcagcta attcaaataa tgccttatcg ccgttggcaa ttacattcgc
     5461 tttaatttca ttaactgccg ctttaatact ctcgccaacc acctgtgccg gacgggcaag
     5521 atattgctgc tgctcagttt ctgttaaatt gttccaaatt agggtttgca tatttattcc
     5581 ttttacgcca acattttctc aatcggtaaa accaatacgg aacttgcgcc catttctttt
     5641 agctgctcca ttgtttccca gaacaggttt tcttggctga caacgtgcat tgccacacgg
     5701 gtttggtcgt tagctaacgg taaaatagtc gggttttcca caccgggtaa taaagcggta
     5761 atttccgcca gtttgtcttt gggggcgtgc agcataatat acttagattc gttcgcctgt
     5821 tgcacacctt gaatgcgggt taataattta tccactaacg cttgtttttc cgctgaaagt
     5881 ggttcttggc gttgaattag gcaagcagtt gaacggtaaa tcacttcaac ctcttttaat
     5941 ccgttcgcct ctaatgttgc acctgaagaa accaagtcac aaatcgcatt cgcaattccg
     6001 gcacttggag caacttcaac cgaaccggtg agtaaaatac ttttaaacgg cacattttgc
     6061 tctttcatat accgctttaa taaattgggg taagaagtgg caatcacagc atcttctaaa
     6121 tctttgatat tgttataatt tttatcacga tcaatagcta acgataaacg gcagccacca
     6181 aaatctaact gacgaagttt tttataggca acattctcac cagcacttaa tcgccctaat
     6241 tccacttcct ctaatacatt ttcaccgata atcccaagat caactacgcc gtcaaaaact
     6301 aagcctggaa tgtcgtcatc acgcacccgt aaaatttcaa tcggcatatt ttctgaatag
     6361 gcaatcaggc gttgatcgtt ccaaatgatt ttcacgccac attgtttaag caactcacta
     6421 cattcttggc ttaagcgacc ttttttctgc atcgcaattc ttaatcgatt ttgtgttgtc
     6481 attgttgttt ccttcttatg ttttaaattg taaaaataaa aaaacctctc gaaatcactt
     6541 ccgagagggt taaatttatg ctgcgtttag gcgtactcgg aagtcttatc ttccgcacat
     6601 accaaatgcc cgaaagatta ttcaggtaaa tgatggtggt gatgagtacg aataaaagcc
     6661 attttgttgt tctccaaact aaattgcttt aaaagatacg cttaaatttt ggcaatgaca
     6721 agtgtttttt gcgaaaaaat tgctattttt catctctcta aaacaactat cgcaaacgtt
     6781 tgcgtaaagc ggtataattt gcctgatttt ttgcaaattc aacaaagtag gaataacact
     6841 atgcaaatca gcctcaaaaa gatctactcc ggcaaagtcc gtgatctcta cgaaatcgat
     6901 gaaaaacgta tgcttatggt tgccaccgac cgattatctg cctttgatgt tattttagac
     6961 gatcctattc ctcgtaaagg cgaaatcctc acccaaatct ccaacttctg gttcaacaaa
     7021 ttagcccaca ttatgccaaa ccacttcacc ggcgacagtg tgtttgacgt gttaccgcaa
     7081 gaagaggcag aagctattca acatcgtgcg gtggtttgca aacgcttaat accggtgaaa
     7141 attgaatcga ttgtgcgggg ttatttaacc ggctccgggc tgaaagatta ccaacaaacc
     7201 ggcacgatct gcggcttaac attgccggaa ggcttggttg aggccagcaa attaccgcaa
     7261 ccgatcttca caccgtccag caaagccgag gtgggcgatc acgatattaa tatcagctac
     7321 gaagagtgtg aacgccagat cggtcaagaa cttgccgcca aagtgcgtga tgccgctcta
     7381 aaactctaca ctgaagcggc aaactatgcc ctgaccaaag gaattattat ttgcgacacc
     7441 aaattcgaat tcggcttaga cgaaaacggt gaactaacgc taatggacga agtcctaacc
     7501 ccggattcca gccgtttttg gtcagttgaa acctaccgag aaggcacaaa tccaccttca
     7561 tttgataaac aattcgtgcg tgactggctg gaaaatagcg gttggaacaa acaaccccca
     7621 gccccgaaaa taccggcaga ggtaattgaa aaaaccgtag cgaaatatca agaagcattg
     7681 gatttattaa ccaaataaca ccacaagcgg tcaaatttac gctatttttt gcaaaacaaa
     7741 aacctgtaag ccaacactta caggtttttt agttagtggt aaaaagtgcg gttattctac
     7801 cgcacttttg caaaattttg tgtaaatctg accgcttgtt agccttgcga agaaatacgt
     7861 ttcatatctg tcatataacc acgtaattct tgaccgatta actcgattgg gtggttacgg
     7921 attgcgtcat tcacatcacg taaggtaacg ttgtcgattt ccactgccgg agttggttca
     7981 cctaaatcgc ctttctctaa cgttgggata attttctccg ctaaaatcgg ggttgcaacg
     8041 tgagagaata agtagttacc gtattctgcg gtatctgaaa ttaccacgtt catttcatat
     8101 aaacgcttac gagcgattgt atttgcgatt aacggtaact cgtgtagaga ctcgtagtaa
     8161 gccgattctt cataaatacc ggctgaaacc attgtatcaa aggctaattc aacccctgct
     8221 ttcaccattg caaccattaa cacaccgtta tcaaagtatt cttgctcaga aattttaata
     8281 ccgtctgctt gtggtgcgtt ttcaaaggct gttttacctg tttcttcacg ccattttaat
     8341 aagttggcat cgccgtttgc ccagtctgcc atcatcgttg atgagaactc accactgatg
     8401 atgtcgtcca tatgtttttc aaataagaac gctaattctt ctttgatttg ctcagaaagc
     8461 tcgaacgcac gcaatttggc actgtttgat aagcgatcca tcattaaggt gataccgcct
     8521 tgttttaacg cttcggtaat ggtttcccaa ccgtattgga tcaatttacc tgcgtaagcc
     8581 ggatctttac cttccgacac taatttgtcg tagcacacga ttgaacctgc ttgtaacata
     8641 ccgcaaagaa tggtttgttc acccattaaa tcagatttca cttctgctac gaatgaagat
     8701 tctaatacgc ccgcacggtc accaccggta gcacttgccc acgctttcgc aatggctaaa
     8761 ccttcgcctt tagggtcatt ttccgggtga acggcaatta aggttggcac accgaaacca
     8821 cgtttgtact cttcacgcac ttccgtgccc gggcatttcg gagcggtcat cacaaccgtt
     8881 aaatccggac gaatttgctc accttcttcc acaatgttga aaccgtgtga ataaccaaat
     8941 gccgcacctt gtttcattaa cggcattaca tcggcaacta ctttagagtg ctgtttgtcc
     9001 ggcgttaagt taatgactaa atccgcttca ggaattaatt gctcgtaagt acccaccaca
     9061 aagccgtttt cagaagcacg tttaaatgaa gcacgttttt cagcaatcgc ttcggcacgt
     9121 aaagcgtaag caatatctaa gcctgaatca cgcatattta aaccttggtt taaaccttga
     9181 gcaccacaac ccacaatcac gatttttttg ccttttaaga aattgcagcc atctgcaaat
     9241 tcatcacgat ccataaagcg gcaacgacct aactggtcta atttttgacg taaatttaaa
     9301 gtgttgaaat agttagccat tttttaatcc ttatttgaat taatgagatt gatatgatgt
     9361 tttgtttgca cattgttata gtttgatttg attatacctt aacctaacat tgcgtaaatt
     9421 gaaaatatta atatttcata ttgcataaaa tgcaacttgc aaaaattttg ccaaatttaa
     9481 ccacttgcaa tctctacgat aaagtagaaa ataaccacct aatttaatag aagatcaaaa
     9541 aatgaaaata aacagaatca ttttacaaag ctgtagcgaa tgtgggcaac aagtgcgagt
     9601 cccgctcacg tcaaatggca atgccgtttg cccggtctgc cataatatat tacgcaaaag
     9661 caatacttgg agcttgcacc gtagtgcttt tttggcatta gccattttaa ttttgcttcc
     9721 cttcgcactt acttttccct tgatgagcat tgacttactc ggcatcaaaa ttaatgctac
     9781 cgtatgggac ggtatttgga agatggcaac ggagggctac ccttacaccg cttttatggt
     9841 gctagtctgc gcggtaataa tgccgattgc atttgtattg ctaattttaa ccattcagct
     9901 acaacgtatt attcgccaac gcccccgtta cacgctgatt ttcttaacta aaataaaaga
     9961 atgggtaatg cttgatgtct atttagttgc tcttgcggtt gccgctttta aaattcgaga
    10021 ttatgccgat ctacaattcg atatcaactt aatcgccttt gtgttggtaa cactcttaaa
    10081 caccctactt tttattaaaa ccgagccaaa acaagcatgg gaacgttttt acccagaata
    10141 tcacgccttg ccgtttgatc acccaagcaa tccaacactt tgcccgacct gtgaatattg
    10201 ctttgatgaa actattttag acttaaaagg acggcaacgc tgccctcgtt gtgaaagcaa
    10261 tttatctatt tccgacaacg taaaaataca acgggtttgg gcttgcttaa ttgcagggac
    10321 tattatgatg attccggcaa atattttccc gatttcgaca actgaactgg caggtcaggt
    10381 ttcggcagat tcattaatgt ccggcgtgct tctgtttatg gaaatgggta gctacaccgt
    10441 ggcagcgatt gtgtttatcg ctagtattgc ggtgccggtg agcaaaatta ccattatttt
    10501 ttatctcttg ctggcaattc attacaagtg gaaacacccg attcattggc aaatgaaact
    10561 actacactac gtccattttg tcggacgctg gtcaatgctg gatttattcg tgttatcatt
    10621 gatgatgtcg ctactcgaac gagggcagat tctcagtttc tcggtagggg aagccgcttt
    10681 ctattttgga gcagccgtat tcttaacgat gtttgcctct gcaaatttag attccagaat
    10741 gttgtggaag attcatactg tccagaaaac atcctaaata aagattttcc gataaataat
    10801 acataacatg caaagtaaga aaagtagtac gtaacccaaa atctcaatcc ctattgagta
    10861 agaaagagcc gataatgtag caccgatagc cagaaagaaa ttagcaaata taaaatagtc
    10921 tttactatat ttacttgagg caattagggt atccattgca gtactaaaga acatttccaa
    10981 at
//
LOCUS       DANMGB010000080        10824 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.080, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000080 DANMGB010000000
VERSION     DANMGB010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10824
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.080"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            45..377
                     /locus_tag="PXG19_001519"
     CDS             45..377
                     /locus_tag="PXG19_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6066809.1"
                     /translation="MALSVSSILSSQATYAEETTAELSEVNVVAKEDVKASIEKKNKE
                     IIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNRVGISIDGVSLFLIQKKI
                     PFINAMVI"
     gene            344..2422
                     /locus_tag="PXG19_001520"
                     /pseudo
     CDS             344..2422
                     /locus_tag="PXG19_001520"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2477..2983
                     /gene="hutX"
                     /locus_tag="PXG19_001521"
     CDS             2477..2983
                     /gene="hutX"
                     /locus_tag="PXG19_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL6066810.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(3063..4280)
                     /locus_tag="PXG19_001522"
     CDS             complement(3063..4280)
                     /locus_tag="PXG19_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL6066811.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            4441..7974
                     /gene="mfd"
                     /locus_tag="PXG19_001523"
     CDS             4441..7974
                     /gene="mfd"
                     /locus_tag="PXG19_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL6066812.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            8137..8424
                     /locus_tag="PXG19_001524"
     CDS             8137..8424
                     /locus_tag="PXG19_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6066813.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            8425..8637
                     /locus_tag="PXG19_001525"
     CDS             8425..8637
                     /locus_tag="PXG19_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6066814.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            8753..9013
                     /locus_tag="PXG19_001526"
     CDS             8753..9013
                     /locus_tag="PXG19_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6066815.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            9014..9403
                     /locus_tag="PXG19_001527"
     CDS             9014..9403
                     /locus_tag="PXG19_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6066816.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            9423..10661
                     /gene="pepT"
                     /locus_tag="PXG19_001528"
     CDS             9423..10661
                     /gene="pepT"
                     /locus_tag="PXG19_001528"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL6066817.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
BASE COUNT         3249 a         2161 c         2472 g         2942 t
ORIGIN      
        1 ttacctctta ttcaataaag tctaaaaaat tgtgcccgac tatattggct ttaagcgtta
       61 gtagcatttt gtcttcacaa gctacctatg cggaagaaac aacagcggaa ttatctgaag
      121 taaatgttgt tgctaaagaa gatgtgaagg cttctataga aaagaaaaat aaagagataa
      181 ttcagcaaga gttgattcaa aataatcgag atttagttcg ttatagccct gatgttggca
      241 ttgttaacca aggtagacat caaaaaggat ttgctattcg tggagtggaa gacaaccgtg
      301 taggaataag tattgatggt gtctcgcttt tcctgattca gaagaaaatt ccctttataa
      361 acgctatggt aatttaaata catctcgcca atctatagat ccggaattag ctcgtactat
      421 tgaagtatct aaaggtgcag attctttcaa tcaaggtagt ggtaatttag gcggcggagt
      481 taattatcgg acgcttgagc cttatgatat tgttcgtaac ggtaataaat ttggtgcttt
      541 ttatcgcaca ggatatggta ctcgtaataa tgaatggttg aatacattcg gtgttggata
      601 tttaggtgag aaagctgagg cgatattggt ttattcaaat cgccatgggc atgaaatgaa
      661 aagtgcagga ggttatacac ttcctgaaga ttctctacaa actcgctctt tacgcagtag
      721 taaacaaact cctgatgatt ctactcataa tcatcataat tatttagcca aatttgctta
      781 tcgatttaat gataatcacc gcgttggtgt ttcttacagt gggcaaaata ataaaaatta
      841 tattatcgaa gattcagccg ttactattac ttctttttgg cgtgaagcgg aagaccgtag
      901 taaacgtgat acagtaaatg ttttttatga gtatttccca gagtcaaaat ggatatctct
      961 agcgaagata gatgcagatt atcaagatac tgaaacatct gcttataact atgaaggtac
     1021 acgcgctgaa gatgcaacag actggagccc tgctaaacaa agaaaaccaa gtgacaataa
     1081 tattcgtatt tttaatactg aattgaaacg cttaaatttc cgtttagaca gccaagcatt
     1141 agaatttggt aaatggactc atcagctatc tttcaaagcc tctactgcag agagagattt
     1201 cgatgtatta cataaggact cggtttattt atccggtgtt tgggtaaatt ctcccgattc
     1261 tacgatgatg tacccaatta aaacgaaaca gcacactttt tcattgcacg ataagattga
     1321 tttaacgcat gattggattg caacgctagg cattcgttat gattgggcga agtatgaaca
     1381 acaagaactc aatggtcttg tttgtcgtaa ctgcgtaaaa actgacaatg cgaaatttaa
     1441 tcaactaact tgggttaccg gtttagaaaa acatctgact gaggcatgga aagtaggata
     1501 taacattggg acaggcttcc gtattccaaa tgcatcagaa atgtattttg attaccgtga
     1561 taatgctgca ggagcttgga tgtccaatcc aaacctaaaa gcggaacgta gtttaagcca
     1621 aaatttaagt ttgcaaggta gtggcaatgt tgggctgctc tcagttaatt tccaccatac
     1681 taaatataaa gattttttat gggagcaaga aacctgggat gtttaccaag catatggtag
     1741 agagttttgg cgcccggtac agcaaatgca aaatattgat tctgcgaaaa tctacgggct
     1801 agaagtgagt ggtaaatgga atttaaattc agctatgcca atacctgaag gctggaagct
     1861 atttggagcc ttcggttaca gcaaaggtag tatgtctaac ggggcagatt tactttctat
     1921 tcagccgatt aaagccgtag ttggcttaga ttatgaacaa cctgaaggta aatggggagt
     1981 attttctcgc ttcacattct tgggggctaa aaaggcgaaa gatgcaaaat atttaaaaac
     2041 attaccggaa aaatgcctta aagaggatag aacgccaaat ccgtattacc cttattgggg
     2101 ggatgaatat gacattcgtt gtactgaata ttctcacgag acaggtttag atacctggaa
     2161 gcacttaaat gctaaagcct ttgttgtgga tttatacggt ttctataaac caactgagaa
     2221 tattacatta cgtgccggta tttataattt gtttaaccgt aaataccata cttgggatac
     2281 tttacgtggt ttaaatacaa caggtggaat cgttaattct gttggagtac gtgaaaatgc
     2341 aacttacggt ggctatcctg gattacaacg ctattatgaa cctggacgta acttctcggc
     2401 taattttgaa taccgtttct aatttacaaa tttacttaga gagctaagaa actctcttta
     2461 cttaaaggaa catttaatga tatcaatcga acaacaaacc gccttacgca atgaattagc
     2521 cgaaaatccg gggcaaattt tagaaatgtt agcggcaaaa tatcaatgca cgctggaaga
     2581 ggtaatgctg aatttaccgg ctgaaatgct aaaagtaacc gaaggggaac gttttgccga
     2641 agtgctacag caaatccacg aatgggacga tgcgattacg ctgatttcgc atacggaaga
     2701 taccattatt gagtttgtgg gaaagctccc aagcggttca atttctcgtg gattttacaa
     2761 tttcgaacat aaagagggcg gaggcttaca agggcatcta cgctacgaaa attgtgccaa
     2821 aatttatttg ttggatcgtc cttttatggg aaaacgtact gtttcactga ttttcattaa
     2881 taaaaaaggc aacgcaatgt ttaagatttt tgtcggcaga gagaaaattg gcggggcatt
     2941 aaaagagcat caaattaagg cgctgtatca gttgattggc taatctgtaa aaagtcatcg
     3001 aaaaatgacc gcttgtaact tatagaaagg gctacgatat tgaatcgtag cccttttcaa
     3061 tattagccta ccgcttgcgg taaatagcca gcctgaatta aaaacggaat gaccataatg
     3121 ataataccgg caattaacgc aaccactaat gccaaattac caccaatcac acggtaaggt
     3181 aaattcggat attggcgacg tgctttccac gctaagccga taggtaaaat cataccatag
     3241 aacgcaaaga gtaaaccggc gtaacctaat gccttaataa agccgttcgg atagaataaa
     3301 gcgaacagaa ttggcggtgt aaaggtggcg atggtcagcc ataaacggtt agtcggtaga
     3361 tttaagcgtt ttaacaaatc gcccacgcct tcaaaaattc ccatcgaaac ccctaaaaat
     3421 gaggtaatca atgcaagcac tgagaataag cgaaccattt cgcctaaaat cgtactaccg
     3481 gtaatctggc tagtggcttt caccaagccg tttaaggtcg gatcttgtgt caaaattgtg
     3541 gtgaattcat tttggcttaa taccccgtgt gtagcgagct gccacaataa ataagccact
     3601 agcggaattg ccgtcccgat ataaatagat ttacgaattt tgccgatatc tgcgtctaaa
     3661 tagctattaa ttgttcccat aataacgtgg aaaccgaacg cagtgaagaa aatgggtata
     3721 gcagaaataa tgagtaagtt atctaatgga attgctgtca agttttccag cttcgcttta
     3781 ggcagcatca tcagcaacac ggcaataaaa gcaacaattt ttcccaaaaa cagtactcgg
     3841 gttaaaccat caaccgattt cacgccgact accacaaatg tacctaatac cgcagtgaag
     3901 attaaaatgc tgattttcag tttcatatca gcatctgcca tttcaggcat tacaccggct
     3961 aacagtgaac caccaccggt aatataagcc gcaagtaggg cataaagtag tacgagcaaa
     4021 ctgaaagtgg ctaatacacg cccgattaag ccaaagtatt gctcggcaag gcttgccact
     4081 ccaacatctt tttgcggagc ggtttgataa acttccataa ataataaacc ggtgtaggcc
     4141 aataaagccc ataatccgac taagagtaat gcggttgccc caaaacccat tcctgcagag
     4201 gtgagtggca ttgcaagcat tcctgcacca atggtagtgc ctgcaatcat taatgcactt
     4261 cctaaaattt tatttttcat aatatgtgtg agtaagagtt aaaaaagggg aacattttat
     4321 cagaattttt tcgcaatgcg atctagataa cataatttct ccgcttattt tgcacaatca
     4381 gccgtgcttt agtaaactaa gcaacaattt gcaatttttt atttaaaaca gaccgcttgt
     4441 atgtctttaa tttcacttaa tctgccgaaa tctgacggca attttcaaga tcatcaaacc
     4501 ctcggtaacc ttgtcgggca ttccgatacc cttgcgatca gccaagctgc ccgagccttt
     4561 tacggcttga cggtggttgt cacacccgac acccgcacgg cgttacgctt ggaaaaagcc
     4621 ttgcctcagt ttgcagggct gccagtgcaa ctgttccccg attgggaaac cttgccttat
     4681 gacaattttt cgccgcacca agacattatc tccgcccgac tttctgccct gtttgaactg
     4741 caacaagggc gacagcagat tttgctgttg ccgatcaaca ccttaatgca gaaggtctgc
     4801 ccgccgaatt atctcgctaa caatgtgctg ttgattaaaa aaggcgaccg tttttcgatt
     4861 caaaaactgc ggttacaact ggaaaatgcc ggctatcggg cggtggaaca ggtgttggaa
     4921 tatggtgaat acgccgtgcg tggctcgatt ttagacctat tcccgatggg agcagaagag
     4981 ccgtttcgcc tcgatttttt cgatgatgag atcgacagta tccgcacttt tgatgtggat
     5041 aaccaacgca ccaaaacgga aattgccgaa attaatttac tgccggcaca cgagttcccg
     5101 actgatagca acgggatcga gcattttaga gccaaattcc gtgaaaaatt cggtgaaatc
     5161 cgccgtgagc cggagcatat ttatcagcaa gtcagcaaag gcattttaaa tgcagggatt
     5221 gagtattggc agccgttgtt ttttgaggaa atggcaagtc tgtttgacta tttccctgcc
     5281 caaacgctgt ttatcacttt cgccgatatt cagcaaaaag ctgaacaatt tcaccaagat
     5341 acccaaaacc gctatgaaag ccaccgagtg gatccgatgc gaccgctact gccgccgagt
     5401 gatctctggt ttgcgattga tgaggtaaat cgctggctga aaggctatcc ccgtttaacg
     5461 ataacttcgg agaaaatccg taaatcagca gcgaaaatga atgcaaatgt ggctaacttg
     5521 ccggatattg ctattcaatc ctctgccaaa gagccgtttt ctgctttcca gcaattccgc
     5581 caaaaatttg acggcaacat tctgttttcg gtggagagcg aagggcgaag agaaaccttg
     5641 ctggatttgc ttgctccgct tggggtgaag ccgaagcagg tcaattcatt agatgaagca
     5701 caaggtttgc cattttccct gattatttca ccgcttgatc aagggtttgt ggtggaaacg
     5761 ggcgggcacg ggacccgtcc ctacgatgat gaattaaata caaatggcga aaatgataat
     5821 aactacgtag gggcgggtcc tgtgcccgcc cgcaaccttg ccatcatctg cgaaaccgac
     5881 ctgctgggcg aacgtgtgca aacacggcgt gagaaaaacc gcaaagccgt caatcctgat
     5941 accttaatcc gtaatttagc agaactcaaa atcggacagg cggtggtgca tttggaaaac
     6001 ggcgtggggc gttacggtgg cttaaccgtg ctggacgctg gtgggatcaa agccgaatat
     6061 ctcgtgctac attatgctaa cgatgccaaa ctctatgtgc cggttgcctc gctccattta
     6121 atcagccgtt atatcggtgg ggcggatgaa actgcgccgc tacataaatt aggcagtgaa
     6181 gcgtgggcga aaacccgcca aaaagcagcg gaaaaaatcc gtgatgtggc ggcagaattg
     6241 cttgatgttt atgccaaacg agaaagccaa accggttttg cgtttgccta cgataaagcg
     6301 gaatttgatc agtttagtgc cactttccct tatgaggaaa cggacgatca gaaaattgcc
     6361 atcaatgccg taattagcga tatgtgccaa gccaaagcga tggatagatt ggtgtgtggc
     6421 gatgtcggct tcggcaaaac cgaagtggcc attcgagcga ctttcttggc agtgatgaac
     6481 cataaacagg tggttattct tgccccaact accttgctcg cccaacagca ttatgagaat
     6541 ttcaaagacc gtttcgccaa ttaccctgtg aatgtggaag tgctgtctcg ctttaaaacc
     6601 gccaaagagc agaaaacgat tttgcaaaat gtggcggagg gcaaagtgga tattttggtc
     6661 ggcacgcaca aactgttgca agacgatgta gcgttccgtg atcttgggct tttagtgatt
     6721 gatgaagaac accgtttcgg cgtacgccaa aaagagaaaa tcaaacaact gcgtgccaat
     6781 gtggatattc tgaccctcac cgccacgcca attccaagaa cgctgaatat ggcactcaac
     6841 ggaatgcgtg atctctcgat tatcgccagc ccgccggctc gccgactttt aatcaaaacc
     6901 tttgtgcgac aaagtgatga aatggtaatc cgtgaggcaa ttttgcgtga aattctgcgt
     6961 ggtgggcagg tttactacct ccataacgat gtggcaacca ttgaaaattg tgccgagaaa
     7021 ttggctgaac tcgtgccaga ggcaagaatt gtgatcggac acgggcagat gcgtgagcgt
     7081 gaattggagc gggtgatgag cgatttctat catcaacgct ttaacctgct ggtttgctcc
     7141 accattattg aaacggggat tgacgtgccg actgccaata ccattattat cgaacgggcg
     7201 gacaaattcg ggctggcaca actgcaccaa ctgcgtggac gggtcggacg ctcgcaccac
     7261 caagcctacg cctatatgct cacaccgcac ccgaaaacgc tcaccaaaga tgccgagcaa
     7321 cgcttggagg cgatgagtac cattgataat ctcggggccg gttttgcgtt ggcgacccac
     7381 gatttagaaa ttcgtggtgc aggcgaattg ctcggttcgg agcagagcgg acagattgaa
     7441 agcatcggtt tttcgctcta tatggacttg ctcgaaaatg cggtcaaagc tttgcaagaa
     7501 gggcgagaac cgagcctcga tgaaatcacc caacaccaag cggagattga attgcgtgta
     7561 ccggccttat tgccggacga ttatctgcct gacgtgaata tgcgtctgtc gttctacaag
     7621 cggatcgcaa gctcggaaaa tctgcaaagc ctgaacgact tgaaagtgga gctgatcgat
     7681 cgcttcggct tgctcccaga ggcaaccaaa aacctgtttg cgataaccca acttcgcttg
     7741 tcggcacaaa cgctcgggat taagaaaatc gatgccggca ttcacggcgg ttatcttgaa
     7801 tttaaaccga cagcccagcc cgacccaatg aagtttatcg ccttaatcca aaaacaacca
     7861 gcggtgtaca gttttgaagg ggcggtgaag ttcaaattcc gcttagcact cgaagacaac
     7921 cgcaagcggt tagaatttgt ggaaaatttg ctaagggagg ttgtgggcgg ataaagcctc
     7981 ctaaggttgt caatcttgaa aaacgatttt tgcgatctgt atcgtaaaaa tcgtttttgt
     8041 ttattgcgaa tccagtaatt tcatctaggc tgtttataac ttaaaaaaat agatgtaaat
     8101 atattttatt tacaattaaa aaggagtaaa ctggcaatgg aagaaattaa tggttttgaa
     8161 tgggatagtg agaaagctct tcgtaatcaa caaaaacacg gagttagttt tatcgaggcg
     8221 gtaagcgtat tttatgataa taatgcgatg ttaatcccgg atccagatca ctcatctagg
     8281 gaagagcgtt ttttgctact cgggcgtagc aataaagata atctacttgt ggttgtgcat
     8341 tgcgagagaa ataccaacat tcggattatt tcagcacgtt tggcaacaaa acgcgaaagt
     8401 gggcaatata aaggagtaca ttaaatgaga gatgaatacg atttttctaa tgcagtgaaa
     8461 aacccttacg caaaagggct aaaaagcaaa agtgtggtta ctattcggat tgaagacgat
     8521 gttatcagct attttaaaca acttgccgaa gaggtgaatt tgccttacca aacgttgatc
     8581 aatctttatt tgaaagattg cgttgagcag aaacgtaaac cgactattag ttggtaatat
     8641 tatgatttga aatcagtatg ttattgagta tttgagaatg ggttatcttg ccagttgtat
     8701 aaaataggca tatactttgg catatacact atctatcgga gggtaaagta agatggaaaa
     8761 aattgcgaga ttattccgta acgggcggaa ccaagcagtg cgtttaccgg ttgaatttga
     8821 gtttgatgca gagcaagtct atgtttctaa aaaagaaaat ggcgatattt tattatcatt
     8881 gagatcgaga aataccgagc attggcaacg attgtttgag ctattgcctg ctgttgtatg
     8941 tgatgaaaca tttttagata caaaagagag aaaccaatcc tttgagcaac gggatccttt
     9001 tgaggtagct taaatgtata tgttagatac gaatactgta agctattttt ttcgtggaaa
     9061 tgcaaatgtg gtggcgaaat tgaagtccat taatcctgag aggctttgta tttcatctgt
     9121 aactgctgct gaattggttt atggtgtggc gaaaagaaat aatgggcagc tttctcaatt
     9181 tttagattat tttttatcga gtgtaaaggt tttagattgg aattatcgtt gtgctgaact
     9241 ttatggaaag ttacgggcag agatggagaa aaatggcaaa gtaatgggcg tgcaggatca
     9301 aatgattgct agtcacgctc ttgctgaaga gtgtatttta gtttctagtg atcaggcatt
     9361 taaaatggta cctgatctga aattggagaa ttggttacac taaactatag taaggaaaaa
     9421 caatgaaaca atcccttctt aaccgtttac tacgttacac ccaaattcac acaacttcag
     9481 atccgaaaag ccaaactgtg ccaagctcgc aacagcagtg ggatttgctt catctgctga
     9541 aaacggaagt agaggcgatg gggctaagcg agatttatct tgaccccaac ggctatctgt
     9601 tcgccagctt gcctgccaat attgacaaaa ccctgccggt gcttgggctg attgcccacg
     9661 ttgatacttc gcccgatttt aatggtgaaa acgtgaaacc acaggtgatt gaggcttatc
     9721 aaggcggcaa tattttgcta aacggcagtg gcgattatct ttcgccaacg gatttcccga
     9781 atttaaacaa gctgattggc gacaccttag tcaccactga cggcacctct ttgcttggcg
     9841 cagacgacaa atccggcatt gcgattattc tctcggctat cgagtattta caagccaatc
     9901 cgcatattcc gcacggcaag atccgcatcg gctttaccac cgatgaagag atcggtcgag
     9961 gcgcagatca ttttgatgta aacgcattcg gtgccgatgt cgcctttacc tttgatggcg
    10021 ggcctctggg cgaattgcaa tatgaaaatt tcaatgccga tgcagcgacc gttacgttct
    10081 tcgggcgtag cgttcacccc ggcacggcaa agggcaagat gatcaacgcc ttagagcgag
    10141 cttgcgagtt ccaacaccgt ctgcctcccc atttaacccc tgccaccagc gaagggcgtg
    10201 aaggctttat tatgttgcac ggcattgagg gtggaattga taaagcggaa attcactata
    10261 ttttacgtag ctttgagcgt gatgaattag ctgcattcgg caaaatgctg aatgatacgc
    10321 tggcagagat gcaacagatt tacggcgaac attgcggaaa agtcgagatt gtcgagcaat
    10381 atcgcaatat gcgtgaagtg ctggacgatt acggctactt ggttgaaatt gccgaaaacg
    10441 caatgcgtga acaaggcatt gagccgaatt tagaaccgat ccgtggcggt actgatggct
    10501 cacgcctttc atttatgggc ttgccttgcc cgaatttatt taccggcggc gaaaatttcc
    10561 acggacgatt tgagtttatt tcggttgata cgatggaaaa agccacaaaa gttgtaattg
    10621 atatttgtcg gaaatttgct gattatgatt tcaacaaata aggcggctgc aagcggtcaa
    10681 atttgatgaa aaatttgcaa aaagcgttat ttttcaccaa ttaaacgatt ttttacagat
    10741 ttcctacaaa tttatttgac attaaatctg aaatccatag aatatgcacc tgttgagact
    10801 ctacgaggtt cgtagcgttt ttaa
//
LOCUS       DANMGB010000081        10658 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.081, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000081 DANMGB010000000
VERSION     DANMGB010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10658
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.081"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..856)
                     /gene="pdxY"
                     /locus_tag="PXG19_001529"
     CDS             complement(<1..856)
                     /gene="pdxY"
                     /locus_tag="PXG19_001529"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL6066818.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKI"
     gene            975..1050
                     /locus_tag="PXG19_001530"
     tRNA            975..1050
                     /locus_tag="PXG19_001530"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1008..1010,aa:Thr,seq:tgt)
     gene            complement(1145..2098)
                     /gene="accA"
                     /locus_tag="PXG19_001531"
     CDS             complement(1145..2098)
                     /gene="accA"
                     /locus_tag="PXG19_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL6066819.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(2152..3576)
                     /locus_tag="PXG19_001532"
     CDS             complement(2152..3576)
                     /locus_tag="PXG19_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL6066820.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(3578..4312)
                     /locus_tag="PXG19_001533"
     CDS             complement(3578..4312)
                     /locus_tag="PXG19_001533"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL6066821.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            4459..4956
                     /gene="tpx"
                     /locus_tag="PXG19_001534"
     CDS             4459..4956
                     /gene="tpx"
                     /locus_tag="PXG19_001534"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL6066822.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(5041..6666)
                     /gene="yidC"
                     /locus_tag="PXG19_001535"
     CDS             complement(5041..6666)
                     /gene="yidC"
                     /locus_tag="PXG19_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL6066823.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(6819..7244)
                     /locus_tag="PXG19_001536"
     CDS             complement(6819..7244)
                     /locus_tag="PXG19_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL6066824.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(7573..10635)
                     /locus_tag="PXG19_001537"
     CDS             complement(7573..10635)
                     /locus_tag="PXG19_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL6066825.1"
                     /translation="MDKATQSYLTELVNQHFSGEIASNYADRLSLATDNSVYQQIPQA
                     ILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVDLSRHMNQILE
                     LNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINTDASGQGSLQY
                     GKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHREIFNRCKTLR
                     PKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICEAKLNLLPIPK
                     YRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWHSVSDLLTEDP
                     ANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLTSDVNSIEKIY
                     AMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYNLPYGMFGHVD
                     AGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMRSYYGERFFGE
                     TLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQIPIQVREEFK
                     GAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLLTEQNVSPDDL
                     IFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACASQCPIKIDVP
                     TFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTFAEKAANKTIG
                     MTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFIVQDPFTSYYD
                     AKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQADFLNRVAKLGL
                     PMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELENCKKSANSDRL
                     PWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGHETKHVEMSKA
                     IYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI"
BASE COUNT         2836 a         2285 c         2289 g         3248 t
ORIGIN      
        1 caatctttac agcttggtaa ctacactgtg gattaacaat ccgatcacga gaagcaataa
       61 tttgtaactc ataaagccct gatctagcgg tttgttccat tacctcattg accgcatttg
      121 cagtgtgttc aaaggcttct agatcggatt ttccatttaa taagttcgcc acaaatagcc
      181 ctgcggttaa atcgcctaca ccgacaggtt ctttggcaaa ttggtagagt gggcggctga
      241 tgtgccaaat gccatcttgg ttggcgaaca gcatttcaaa tttgttgctc tctttgccga
      301 ctcggcttaa atgtttaacc aatacttttt tcgggccttt ggttaaaatc actttcactg
      361 cctcgaccgc ttgctcaaaa ttttccaccg ttaaaccggt taattctctt aattccacta
      421 aatttggtgt gataatgtcg gcttgtgcca ttgccagatt gatcaatccc tcttttacgc
      481 cgtctgccac aatgcagcct ttgtcggggt gtcccattac cgggtcgcat acataaattg
      541 cgtttggatt ttccgctttc actttatgaa aagcctgaat aatttcggct acttgttctg
      601 ccgagccgat atagccagag agtacggcat cgcaacgatg cagttcaccg atattgtgaa
      661 tgccatcaac aatgctaccg atttgttctt ttggcatcac cataccgccc cattttccat
      721 attgggtatg gttggaaaac tgtacggtat ttaacgccca tacatcaaca cctaacagct
      781 gcataggaaa agttgaagcc ttattgccgg catagccgta gacaacgtgc gattgtatgg
      841 atagtatgtt tttcattcat tcactccttt aaaatttcaa tatgtgttgt tttttagtca
      901 tttgaagttg caaggacttg aagctcatca agaaatctct ataatcccgc ctcgttctct
      961 tatccattca atatgccgac ttagctcagt aggtagagca actgacttgt aatcagtagg
     1021 tcaccagttc gattccggta gtcggcacca tcacctttat tttctgatga gtccccttta
     1081 atgtaaaatg gcaagatttt gcaaattttc acaaaaatct taccgcttgt agggtgaaat
     1141 tgaattagac gtaaccgtaa ttcattaagc gttgataacg gcgttccagt aaatcctctt
     1201 tattaagttg atctaaccct gccaaatctt caacaatacg ctgtttaagg ttttgggcga
     1261 tttgttcaac attgcgatga gcaccgccta agggttccgg cacgatgtta tcaatcagct
     1321 caagctcttt taaacgaggg gcagttaaac ccattacttc tgctgccgtt gaggctttat
     1381 cggcactttt ccacagaatc gaggcacagc cttcaggtga aattaccgag taagttgaat
     1441 attgcaacat attgacctta tcgcccacac cgatcgctaa tgcaccgccc gagccacctt
     1501 cgccaattac cgtacagatt actggcacgg aaagttgaga catttcacgc aggttacggg
     1561 caatcgcttc tgactgacca cgctcttccg caccaatgcc cggataagct cccggtgtgt
     1621 cgataaaggt gatgattggc atattaaagc gttctgccat ttccattaaa cgtaacgctt
     1681 tgcgatagcc ttcaggagca ggcataccaa agttacgttt cactttctct tttacggtac
     1741 gacctttctg atgaccgata accatcaccg gacgtccgtc cagacgggca ataccaccga
     1801 caatcgcttt atcatcggca aaggcacggt cgcctgccag ttcgtcaaat tcggtgaaaa
     1861 tatgctcaat ataatctaaa gtgtacgggc gattggggtg gcgtgccata cgggaaattt
     1921 gccacgcatc taaattagca aaggttttct tggttaattc ctcgcttttc ttttgtaaac
     1981 gcttgatttc atcatcaaga ttaattttgt catcttgctc gctgactgct cttaaagact
     2041 cgatcttggc ttccaattca gcaatcggca attcaaaatc taaaaattct tggctcattc
     2101 tattttcctt tttatgggca aaattatggg gcattatcgc ttatcagtcg gttattgtcc
     2161 attttcaatt acgctaaatt gacccatcgt acctctatca cgcagcataa aatcgctcac
     2221 gccaaaggta aatggcagtt gctcaggggc agtattatca aagcgaacca acagcgtgat
     2281 ttcttgctcc gcctcgagcc aaacggtgtc ccgccacgca agttgtttga tagggtattg
     2341 cttgcggttt agggtttcaa taatgaattt tgcaccttgt agcgtaaatc cgaccgcttg
     2401 tgtgctatgt aaataccaac gctcaacgct gcctttttgc gcggtaaaat caatgcgttt
     2461 tgggtcaaac cgcttttggt tgattaaata atcagccgga cgaatggcaa aacgtctctc
     2521 ttggctgatt ttcaggttaa attcctctaa gttgaaagcc ggtaaactcg gtttattatt
     2581 caataccgct gccattcctt cagggcgaag ctctaaaatc acgttatcat tcaattcgtc
     2641 gttgtcagca aagacctgcc cgattttgta aaaaatatct cttttttgac cgcttatcag
     2701 cgataccgct ttcccttcgc ttaaatcgac caacacttcc accctttcac tcggtgcaag
     2761 ttgaaccgat tcggtttcaa gtggctctgc cagcattcct aagccggtgg cgattaggta
     2821 caacggctgc tcgttatcta agcgtaattc ataagcacgg gaaagtgagg cattgacgat
     2881 ccgcaatctg acccagccac gaggcacgtt aaaataaggc gattcctgcc cgttgacaaa
     2941 taatcgctta ccgaaaaatt gtgaggtgtt tttatctaac acctgtacgc cgtctttgtt
     3001 gagcagctgg tcttgcagaa ttaacggaat gtcgttcacg ccatatttat tcggtaaagt
     3061 ggcttttttg ctctgttcat cttcaatcat ccacaagccg gctaagccac gatacacttg
     3121 gaatgccgag ttgagcattg tatcggcgtg ataccaacaa gtacaagccg gttgattgat
     3181 agaaacaatc ggcgaccagc tacttttggg gtcaagggaa cgatgcaccg tgccaatcat
     3241 ctcacttgag gcttgcaatc cttgaatatt cattgagatt ttttgcggta aattattgag
     3301 ataagttaat ttgacaaaat cccccgattt tacccgtacg gttggggcaa gatattgccc
     3361 gttcacaccc catacatcaa ccaatttgcc tttatcaaat tgggtttgtg cggggcgtaa
     3421 atccaaccga accggctttc ctcgcccaat atccattaaa ggcggaatgt tcagttgcgg
     3481 tcgctctgct gctaatagcg gtgttggcac tgttgcaaat ccagccgcaa gggcagagcc
     3541 ttgtaaaaat tggcgtcggg tgatctgttt tttcatatta ggcgtttttt gcagtgtttt
     3601 ctaactgttc gacttcttga ttaagttgtt caaattttgc caacataatt tgatggcact
     3661 tttccatcag ttctttgacg ttttcacggg aatagcctga agtatcaatc ggatcaagca
     3721 tttcacagat tactgtgccg ttatttgaac ggttcaaatc cactttattg tgtaaattag
     3781 agcaaactac cggcacaatc ggcacgccgg cagaaatggc taaatggaat gcaccggttt
     3841 taaatggcag taaaccacgc ccacggctac gagtaccttc cgggaacatc cacaccgaca
     3901 cattgcgttc tttcacgatt tgccctgctt tattcattgt ttcaatcgca ctggaacgct
     3961 tttcacggtg aataaaaata ttgccggttg cccagtaaac caaaccgaaa aacggaatcc
     4021 aaatcaggct ttttttgccg atactcaccg tcttttctgc caccattgag gaaatcgtta
     4081 ccatatcgta attgttttga tgattgccga tatagacaac cggatagtta atttccggct
     4141 ttttgcgggt aattaattcc aacccgacta atttatgcaa agcaccaaac caacgagcta
     4201 ccacacccac gctacttggg tgacgtaaac gcagtaacgc ataaatagtg ccaaaaatag
     4261 aaatgaaaat agcggcaagg gcaacaatta aaatacgaaa aatttttaac ataatggaat
     4321 aaccttaaaa ataaattgtc taggagtata gcaaaataag gttattttct aaaggctatc
     4381 cacattaaat tgatagtttc ctattttgca aaaaatcggt atatttaaac cgcttgttta
     4441 tttgataagg agaaaaaaat gagtaaagtg actttagcag gaagcccgat tgatgttgca
     4501 ggcacatttc cacaaaaagg cgatgtggtt gccgatttta ccttagtcaa cagtgattta
     4561 agtgatgttt cgctttccga ttttgatggc aaacgcaaag tgttaaatat tttcccaagt
     4621 attgacaccg gcatttgtgc cacttctgtg cgtgtgttta atcaaaaagc ggctgatgta
     4681 gcgaatacgg ttgtcctttg tatttcagcg gatttacctt ttgcccaagc acgtttctgt
     4741 ggagcagaag gaattgaaaa tgccaaagta ttatccagtt tccgtcatcg tgatttacac
     4801 aacaaactgg gggtagatat tatttcaggt ccgttggcag gcttaacttc acgttcagta
     4861 attgtgttag atgaaaacaa caaggtatta cacagcgaat tagtgccgga aattaaacaa
     4921 gagccggatt atgaggcggc gttagcggta ttataatttg cagaattatg ctggaaaata
     4981 accgcttgta aagcaacaaa aagcccgttg attcaattca acgggctttg tttttagtga
     5041 ttatttctta cgagagtgta agcctttttt ctcaaggtta cggtaaatca accattgctg
     5101 tgcaatcgtg attaagtttg aggttaacca gtaaagcact aagcctgatg ggaaccataa
     5161 gaagaacacg gtaaagataa ccggcataaa ggtcattact ttttgttgta ccgggtcagc
     5221 taccggtgtt ggcgacattt tttgtaacaa gaacatcgaa ccacccatta ataaaggcaa
     5281 aatgtagtat gggtcttgtg ccgataagtc ttgaatccag ccgaagaaag gtgcgtggcg
     5341 taattctacc gcttccataa atgtccaata taaagcaatg aaaatcggca tttggattaa
     5401 aattggtaag cagccaccca ttgggttcac tttttcttct ctgtagagtt tcatcatctc
     5461 ttggctcata cgttggcggt cgtcgccgaa acgttcacgc atttcagtaa tgcgaggttg
     5521 taacatacgc atttttgcca tcgaggtgta ttgtgctttg gttaatgggt aaagaatggt
     5581 tttcactaca atagtgacac cgataattgc caagccccag ttgcttacga ttttttgaat
     5641 tgcggttagt aaccagaaaa gcggtttagc gataaaccac gcccagccgt aatctacggt
     5701 taagtctagg tgatttgctg attcgcccat ttctttctga tctttagaac ctgtccaaag
     5761 tttgctattt aaattagcct ctgaatttgg cgcaatcgta gttaaagggc cacggtaacc
     5821 gatagttgct accccattat tggtgcgtga ataaaggctg ttatccgcat cttggtttgg
     5881 cacccaagca gacacgaaat agtgctgtaa taccgcaatc caacccgctt tggtgtccac
     5941 gcttaagttg gctttttcca tatcttggaa actgtatttt ttgtagttgg tttctgaaga
     6001 agaataagcc ccgccggtgt aagtcggcat ggttaaattg ccggaacttt caactataga
     6061 gtgttttaat tgcccgtaag gctgaacttc aatcgcttgt gcagtattat ttttgatatt
     6121 gaagtttacc ccaacatcgt agctaccacg ttttagcgtg aaagttttgg tgtaaaccac
     6181 accctctttt tcaaaggtta atggtacaga aatttcattt tgcccttcgg ctaatttgaa
     6241 gctatctgcc gttaccgcat attgtgggcg accggcattg gtatcaatcc cgtttttacc
     6301 cactaaaccg ctttgagcaa cgtagatttt gtcgccgtct tgctgtaata gtttaaatgg
     6361 cgtgttagag tgtaattcag cattgtgttt taacaaatct gagccgatga catcaccgcc
     6421 taaggtatca atagtcagac gtaatacatc gctttccacg gtaatggttt taccttgcgt
     6481 gatgctatct gcgattggat tattggcatt ggaagcagac ggaagatcac ccgcttgttg
     6541 ggtttgtgct gccacttgag cttgtttttg tgcttgaatt tcaggatcaa aatcttgttg
     6601 ccattgtgta aaaatcaaaa tagacacaag aaataaaccc attagcagta agccacgatt
     6661 attcatgttg gaattctctt gttagtaatg gataaaaaga aaggtatttt ataataggtt
     6721 agcttgtttt ccaaacgcct tttatgaaca agcggtcgga ttttccaagt tttttgcaaa
     6781 attttcggag aatttgaccg cttgtggaga ataagaaact agcgtttatc taaggttttg
     6841 gtggaaaggc gagcaactgc acacaggtta ccttgttcgt ctttaatgtc gatattccaa
     6901 acctgtactt cacgccctaa tttcagcggt gtagctttgg caatcgcttt tgtgcctgcc
     6961 ggaatcgatt ttaaatggct gatgtttagc tccattccca ccgcaatttg atggggttca
     7021 cacaccatta acgcccctgc attggcagta gtttccgcga gtgctgccga tacaccgccg
     7081 tgcaatacgc caaacggctg ttgagtgcgt tcgtccacct gaagctgtgc ttcaatccaa
     7141 tcttcaccga tagcggtaaa ttcaatccct aagtgtgaca ccgccgattt ttggctgagt
     7201 gtgtttaatt gttcacaagt tgctgtttgc ttccaaatgg tcattattat ttcctgtcta
     7261 ataaaaaagc tgtctattta gacagctttc attatctctt tgagcgaaac atactacgcc
     7321 aatagtacat tgtttggtcg cccatattac cttaagccat atagcactaa ggaggtgatt
     7381 tatgtgagaa aatcagaagt tttctttctg gttgcgttgc taatattatt agcaacttcc
     7441 gctagcatta aagtactcac catacttgat gtgctagttt ggttattcgc tagataacct
     7501 aaaatcagac agaggcaggc tggttacctg cctcgctttt tattctaagt acttttaggt
     7561 tacatttcaa ccttaaatca cgtccagcaa cgcttgaatt gggtgtttaa tgccttgttg
     7621 ttcaaaacgt ttgacttgcg agcggcagga gtagccggtt gctaggcaac gctcaagcgg
     7681 tttatttttt aatttaattt gccatgattg ctgataaatc gctttcgaca tttcaacgtg
     7741 tttggtttcg tgtccgaacg tgcctgccat tccacagcaa ccgacatttt cattgagtaa
     7801 ggtttcacca aaatgggtga aaatagcttg ccactctttc attgagcttg gcaaggcggt
     7861 ggattcggtg cagtgagcaa ataaatacca cggcaagcgg tcggaatttg ccgatttttt
     7921 gcaattttcc agctcgccgt ttttaatcac ttcccttaac cattcgtgtg ccaataagac
     7981 tttgaaatcc ccccgagctt ctttgaggat ctctttgtat tcttcacgat aaagcaaagt
     8041 taaggcagga tcgacagcca ccatcggtag ccccaatttc gccacacggt ttaaaaaatc
     8101 ggcttggttt ttcgctgttt tcgcaaattt atgcaaaaag cctttaacgt gttgtgcttt
     8161 accgcttggc ttgaatggca acacaatcgg cttaaagcct aattttttaa tgagagcgat
     8221 aaagtctgcc accactttgg catcgtaata agaggtaaac ggatcttgca caataaacaa
     8281 ggttttgcaa ttttttgcag aaaaatcacc gcttgtagct tgttgttcaa ggctttctaa
     8341 gctctcgcct tggtagccga cttccaccaa ctgatgttgc agatttggca ctgacaatgc
     8401 cggcaaatag gtcattccaa tggttttgtt tgcagctttt tcggcaaaag ttgaggtgct
     8461 gaaaaagtta aaaaaacgtg gttgtttcgc cattaaaggg gcgataaatt ctaagtttga
     8521 gaccacataa tctttcagtg gtcgcaaata gcggctgtgg taaagctcgt taaattgcga
     8581 tctgaacgtc ggtacgtcaa ttttgattgg gcattggctg gcacaggctt tgcaggcaag
     8641 gcaggtgtcc atcgccgctt tgacttcgtg tgaaaaatca tactctttgt ttttattgag
     8701 cgtgttgcga atttttgcaa caaaatcagc taatttgacc gcttgtttgc gaggtttgaa
     8761 gatcaaatcg tccggcgaaa cgttttgttc ggtaagtaat ctgagccatt cacgcacaag
     8821 agtagcccgc cctttcggtg agtaaagacg gttgcccgag actttcattg aagggcacat
     8881 cgtgctgtgt acatcaaagt taaaacatag cccgttgccg ttacaattca ttgctccttt
     8941 aaattcttct cgcacttgga ttggaatttg gcggtcaaaa tcggctcgca tttgtgagtc
     9001 aatcgggtag agcgaggttt cgctttctaa tggtgtacaa attttacctg ggttcaagcg
     9061 attgtacggg tcaaataagg ttttgatgta acggagttct tgccacaaag tttcgccaaa
     9121 gaaacgttcg ccgtagtaag aacgcatacc tttgccgtgt tcgccccaaa tcaagccacc
     9181 gtatttggcg gtgagttcga ctacttggtc ggaaatttgc ttaaaggttt ccacttgggc
     9241 tttgtcgcat aagtcaagag cagggcgaac gtgtagcacg ccggcatcaa cgtggccgaa
     9301 cattccgtaa ggcagattat agcgatctaa taaagctcga aattccacga tgtaatcggc
     9361 aaggttttcc ggtggcacag cggtgtcttc tacaaaggcg atcggttttg cccagccttt
     9421 ggcattgcct agcaggccta cggctttttt ccgcattgcg tagattttct cgatagaatt
     9481 tacatcactc gtgagttggt agccgataat cccggcttca ttatttgcca ttttttgatc
     9541 aaggctttgg cagagtgctt tcacttgggt ttcaatttga gtctgatcgc ttgaggcata
     9601 ttcaacaatg ttaatcccta aaatcgggtt ggctgggtct tcggttaata aatctgacac
     9661 cgaatgccag acgatatctt gcttggcaag attgagcact ttggaatcaa ccgtttccac
     9721 cgataaggct tttgcctcta acataaaagg agcggagcgt aaggcggcat caaaggaatt
     9781 atatttaata ttaattaagg tgcgatattt gggaatcggc agtaaattca gtttggcttc
     9841 gcaaataaag gcaagcgaac cttcagaacc ggttaaaata cgggtaaggt taaattcgct
     9901 ttcaccatgg ttaaacacat tttttaaatc atagccggta ataaaacggt taagctgagg
     9961 cagttcgttc agcactttgg ggcgtaatgt tttgcaacgg ttgaaaattt cacggtgcaa
    10021 ggttttgccg agagcggaga gatttaaccc ttcaatatgt gcaaaaaaat cggcagattt
    10081 gaccgcttgt gtctctaaaa tatcgccgtt aataagcaca gatttgatgg caagaatatg
    10141 atcagatgtt ttgccatatt gcaaagaacc ttgcccagag gcatcggtgt tgatcattcc
    10201 gcctaaagtc gctcggttac tggtagaaag ttcgggggaa aagaaaagtc catgtggttt
    10261 taaaaattga ttgagctggt ctttcaccac gccagcctgc actcgaaccc aacgctcttc
    10321 cacattcagt tccaaaatct gattcatatg gcgggagaga tcaacaataa tattattgtt
    10381 aagagattgc ccgttagtgc ctgtgccacc gcctcgtgga gtaaaagtta aatgttgata
    10441 ttctggcttt tgggcaagtt tggttagaat tacgacatca gaaacggatt tcggaaacag
    10501 aatagcttgc ggaatttgct gatacacgct gttgtctgtt gccagtgaaa gcctatctgc
    10561 ataatttgat gcaatttccc cactaaaatg ctgattgacg agttcagtta aataggattg
    10621 ggtggcttta tccagttgcg gtacttcaga gagtctag
//
LOCUS       DANMGB010000082        10584 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.082, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000082 DANMGB010000000
VERSION     DANMGB010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10584
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.082"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            64..1572
                     /locus_tag="PXG19_001538"
     CDS             64..1572
                     /locus_tag="PXG19_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL6066826.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
     gene            complement(1637..1858)
                     /locus_tag="PXG19_001539"
     CDS             complement(1637..1858)
                     /locus_tag="PXG19_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6066827.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(1887..2396)
                     /locus_tag="PXG19_001540"
     CDS             complement(1887..2396)
                     /locus_tag="PXG19_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL6066828.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            complement(2503..3837)
                     /locus_tag="PXG19_001541"
     CDS             complement(2503..3837)
                     /locus_tag="PXG19_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL6066829.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            complement(3948..5096)
                     /gene="dapE"
                     /locus_tag="PXG19_001542"
     CDS             complement(3948..5096)
                     /gene="dapE"
                     /locus_tag="PXG19_001542"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL6066830.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            complement(5226..5573)
                     /locus_tag="PXG19_001543"
     CDS             complement(5226..5573)
                     /locus_tag="PXG19_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL6066831.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            complement(5573..6430)
                     /gene="folP"
                     /locus_tag="PXG19_001544"
     CDS             complement(5573..6430)
                     /gene="folP"
                     /locus_tag="PXG19_001544"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL6066832.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            complement(6539..7501)
                     /gene="rluC"
                     /locus_tag="PXG19_001545"
     CDS             complement(6539..7501)
                     /gene="rluC"
                     /locus_tag="PXG19_001545"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL6066833.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            7610..8512
                     /locus_tag="PXG19_001546"
     CDS             7610..8512
                     /locus_tag="PXG19_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL6066834.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            8610..9107
                     /gene="rraA"
                     /locus_tag="PXG19_001547"
     CDS             8610..9107
                     /gene="rraA"
                     /locus_tag="PXG19_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL6066835.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(9155..10516)
                     /locus_tag="PXG19_001548"
     CDS             complement(9155..10516)
                     /locus_tag="PXG19_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL6066836.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALK
                     TLQ"
BASE COUNT         3106 a         2370 c         2053 g         3055 t
ORIGIN      
        1 caacacctat aattctcttc ggattaatta cctatcttat ttctaattta tgaggattct
       61 attatgtcta aatgtcctgt tacacatttg acaatgaaca acggtgcacc tgttgttgat
      121 aaccaaaaca gcttaacagc gggtccacgt ggtccattat tagcgcaaga tttatggtta
      181 aatgaaaaat tagcgaactt cgtgcgtgaa gtcattcctg agcgtcgtat gcacgctaaa
      241 ggttccggtg cgttcggtac tttcactgta actaacgaca tcactaaata cactcgtgcg
      301 gcaattttta gccaagtcgg taaaaaaact gaaatgtttg ctcgtttcac caccgttgca
      361 ggtgaacgtg gtgcggcaga tgctgagcgt gatattcgtg gtttcgcatt aaaattctat
      421 accgaagaag gtaactggga tatggtgggt aacaacaccc ctgtgttctt cttacgtgac
      481 ccacgtaaat tcccggattt aaacaaagcg gttaaacgtg acccacgcac gaatatgcgt
      541 tctgcaacta acaactggga tttctggaca ttattaccag aagcatttca ccaagtgact
      601 attgtaatga gtgaacgtgg tattccggct tcatatcgtc atatgcacgg ttatggctca
      661 catacttata gcttcatcaa tgcagctaat gagcgtttct gggtgaaatt ccatttccat
      721 acacaacaag gcattaaaaa cttaactaac gaagaagcag ccgctattat cgctaacgat
      781 cgtgaaagtc accaacgtga tttatacgaa gcgattgagc gtggcgattt cccgaaatgg
      841 aaaatgtttg ttcaaattat gcctgaaact gatgcagaca aagtaccata ccacccgttc
      901 gatttaacta aggtatggcc gaaatcagac tatccgttaa ttgaagtggg tgagtttgaa
      961 ttaaatcgta accctgaaaa cttctttgct gatgtggaac aatctgcatt cgcaccaagt
     1021 aacttagtgc cgggcatcag cgtgtctcca gaccgtatgt tacaagctcg tttattcaac
     1081 tatgcggatg ctcaacgcta ccgtttaggt gtgaaccacc accaaatccc tgtaaacgct
     1141 ccacgttgcc cggttcatag caacgctcgt gacggtcaag gtcgtgtgga cggtaactac
     1201 ggtagtacca ttcactacga accaaacagc ttcggcaaat ggcaagaaca agctcaatat
     1261 gcagagccac cactgaaaat taatggtgat gcagcccact ggaactatcg tgaagacgat
     1321 gctgactact tcagccaacc acgtgtattg ttcaatatga tgaatgatga acaaaaacaa
     1381 gcattattca ataatactgc tgcaggtatg ggcgatgcat tagacttcat taaataccgt
     1441 catattcgta actgctatgc ctgtgatccg gcatatggtg aaggtgtggc aaaagcatta
     1501 ggtatgacgg ttgaagatgc tattgctgca agagcaacag acccagcatt aggtcaaccg
     1561 ggtttactct aatccttagt aaatacaaaa ctcaaagcaa aagctctaca aaaaagtaga
     1621 gcttttttat tgctaattac ttaaccaccg taatttccca caaggcatca ccaagttgtt
     1681 ggtaatcggt aacttcatag ccttcctctt ccgcccaatt tggaatggct tcggttgctt
     1741 gagtacagtc aaattcaatc gttaagctat cgcctttatt caattttgcc atcgccgctt
     1801 tggcttcgac taatggaaac gggcaaacaa gccctgaggc aggtaaacgt acgttcatct
     1861 ttattactcc ttaaaaaatt aaccttttaa atgctgtggg cggataatgc caatgtaatt
     1921 acactcagga taaacactaa cacccaaggg gaaataccaa atgtttcata aatcgtgcgg
     1981 tgttgaatta cattgctttt tagctcttga ttaagtgggg ctaacacacc ggttcgcata
     2041 gaagcagaaa acagcccata aataaccagt gcaacccaac tgccgattaa accctcaccg
     2101 gcacgatacc acgttcctgt agcacaaccg cctgcataaa taatgccgat accaaacaga
     2161 aatgccccaa tgatcactgc gagcaaaggc aaatcttccg ccggagaact aaaagagccg
     2221 gcttcataca aaagccaaat cccgatcgat tgcaccgtaa ttgcaattaa aagtgccaca
     2281 aacatacggc tattctttgt tacatagaga tcacgaaatg ctccggtaat acaaaaacgc
     2341 cctctttgca tcacaaaccc gagtagaaag ccacataata atcctgtgaa taacataaaa
     2401 aatacctctc aacaaattaa cgtgagaggt atttaaatat aaagccgtct agatggctaa
     2461 taatctttag caaaatgata tgttattcag ttataaatgc tattaaatat gtggaattac
     2521 atcatcaggt gcacctaatt tattgagtgc cacttttctt ggatctacca acttggattt
     2581 ttttatcatc ggttcaaccg ttgaaccttg tactaaaatc gagaaagtga ctaccgcata
     2641 agtcattaac aaaatcaaat cacgtacatc aagattgcct tctgagctcg ataccaccgc
     2701 agcccctgcc ggtacggaaa gtgccatcgc aagggctaat ccaccacgta aaccgcccca
     2761 agtcataatt tttaaggtgt acgggttata agtacggaaa cgttttaaca cttggtatgg
     2821 aatccacagg ctgatatagc gtgcaagcaa acaaattgga attgctgcca acattaacac
     2881 cccaccaata aaggtgaaat caactaacag tgtacttaag ccgataagca ggaataacag
     2941 gtagtttaat gaatggtcga tcatctccca gaagtgatca agatattttt ggctctgttc
     3001 ggagaaaccg gaacggcgag tccagttgcc aatcataata ccggcaacta ccattgttaa
     3061 tgcccctgaa acgtgtaggt agtttgcaat cacaaagccg actgttggaa tcgttagcgt
     3121 aattaaaatt tcaaggcttc cgtcatcggt tgcggaaata aatttatgtg ccacaaaacc
     3181 ggttaataag ccaaaaacga taccgcctac cgcttcttgc aagaacagtc cggtaatacc
     3241 gctaaggttt ggttcttgtc cgccaaaagc aacggcaaag atagtggtaa aaatcaccaa
     3301 gccgataccg tcattaaaca gagattcgcc ctccacgtgc atcgaaaggc gttttggggc
     3361 tttcaggctt ttgataattg ccaatacggc aatcgggtcg gttggcgaaa tcagtgagcc
     3421 aaacagcaaa caatacacaa agccgagctc taacccaagt agccttgcca cgccataaat
     3481 taacgcaccg atcaagaaag tagaaactaa ggttgaaaat aaggcataaa ctgcaatttc
     3541 ccgccgttgc tctttcatta atggtagttt aatcccaagt gaaccggcaa aaagcaagaa
     3601 ccccagcatt ccgtttaaca ggaagctttt aaaatcgagt tgttcaaaaa tggaaatggc
     3661 aagtttatca acattaaacc agccgagaga accgaaggta agaataagaa gggagccgac
     3721 aagggcagag gctgtaattg caatagtggt ttgaatattt tcgtttaatt ttcgggtaaa
     3781 aaacgaaata aacatcgcaa gcccaaacag caagcagata taagagtaga gttgcataac
     3841 atttacctat aaatataaaa actgccgcta gtgtaaacgc tgtttaacag aatagctaca
     3901 taaaaaatag gcagaataca atttgataac attctgccta tttagggtta tgcagttgcc
     3961 aataattttt ctaaaatttg ataataaatt tcgccacaat gtgccaaatc atccgcactc
     4021 acacactcat tcactttgtg aatagtggcg ttcagtggtc caaattccac tacctctgcc
     4081 cccattaatg caataaaacg accgtccgaa gtaccgccac ctgtgtctaa acgaggcgta
     4141 atttttgtga cattttcgac cgcttgtaag gcggcttcga ccaattttcc attgccggca
     4201 aggaatggtt tgcctgataa attccaactt attcggtatt tcaaaccgtg tttttcgagc
     4261 atttccgcta ctttggcttt gatgatttca tcggtcactt cagtgcaata acgtaagtta
     4321 aactgcacat aaagctcgcc cggaatcaca ttattactgc ctgtgccggc tttgatattg
     4381 gcaatttgca aactggtagg cgggaaaaat tcgttaccgt tatcccactg ataagtggtc
     4441 agctcggtta aaaaacccag tgacgtatgc accggatttt ccgccaaatg tggataggca
     4501 acgtgccctt gaatgccctc gatatagaga tctgccgtaa ttgaaccacg tctgccgttt
     4561 ttaatcacat cgccaaacac cttgctacta gacggttcgc ccactaccgc ataatgtacc
     4621 gcttcattgc gagccattaa ggtttcaacc acttttaccg taccgtcttt ggctgctgcc
     4681 tcttcatcgg aggtaatcaa taatgccact ttgcccttat ggtttgggtg atgttgcacg
     4741 aaagtttctg ccgccacaac taacgccgag agcgagcctt tcatatctgc cgcccctcgc
     4801 ccataaagca ttccatctac aatctcagcc gaaaacggcg gataagccca ttggctttca
     4861 tcgcctaccg gcaccacatc tgtatgcccg gcaaacacaa tgcaaggctc tgttttacca
     4921 ttttccgagc cgtgcgttgc ccataaattc aaggtgtcgc caaacggcaa ccattcaata
     4981 ttaaagccca gtttttcaag acgttgtgca atttcttgct gacagccttt gtcttgtggg
     5041 ctgatggaat cacggcggat taggttctgt gcaagggaaa taatttcatt tttcataggt
     5101 tacaagcggt tgttttgggt gaattttttg ctatatatcc tgtaggggcg ggtcctgtgc
     5161 ccgcccgaac aatcctaaag actacggaca ggcacaggac ctgtccctac aagcagggga
     5221 aaaaattaat taaacgcagc cacatactct ttctcattaa aaccaatcaa agcaatatcc
     5281 tctttaatca caatcgggcg tttaattagg gtcggctgtt cggttagcac ttttaatgcc
     5341 gactcacggt taaggttgtt tttaatttcc tcatcaaggt ttcgccaagt ggtgctacgt
     5401 ttattaacta agttttccca accgaatttt gcttccattt ccactaacca atcggcattt
     5461 aaaccgtcca cacggtaatc gtgcagttgt gggttttgat tatgatcttc gagccatttc
     5521 aaggcttttt ttactgtgtc gcaattttta atgccataaa ctaaggttgt catcattttt
     5581 cctcattatc tgattccagc attgcctgcc agatttttaa cgcatcggcg gtttctgcca
     5641 catcgtgcac ccgtaaaatt ttcgccccat tttgagcggc taataacgcc cctactacag
     5701 agccaagtag ccgttgttct accggtttat ctaacaccgc accaatcatt gatttacggg
     5761 aaagtccggc aagcacaggg aagcctgaat ccacaaaggc tttaaggtgt ttcaataatt
     5821 ggtaattgtg tttcacgctt ttaccaaagc caaaaccggg gtctaaaata atgtgttctt
     5881 tgggaatgcc tgcggtgatg cactcgaaaa tccgttgatt taagaaatct gccacatctt
     5941 ccaacacatc atcatagtgc ggattttgtt gcattgtttg cgggttgcct tgcatatgca
     6001 ttaaacaaac cggcaagccc aattctactg ccgctgccaa cgcattcggc tcggttaagg
     6061 ctcgaatatc gttaatgata tccataccga cttttgccga ctctttgaat acttctgctt
     6121 tggagctatc aaccgaaatc aagcaatcaa aacggctgcg gatcgcctcc accaccggca
     6181 caacacgctc taattcttgt tctaagctca caatcgccgc attagggcgg gtggattcac
     6241 cgccaatatc aataatgctt gccccatcag ctaacatttt ttccgcttgg aacaaggctt
     6301 tatcgaggga aaaaaacttg cccgaatcgg aaaatgaatc cggcgtgaag tttaagatcc
     6361 ccataatttg cggtgtggtt aaatctaaca agcggtcatt tttttgaaaa tttttgaaat
     6421 ggatttgcat atttttgctt atattttgtt ggtgcaagcg tccacgcttg taccactcta
     6481 tgttgattta cagcacaagc gtggacgctt gcgctatctt actctctcat taagttattt
     6541 agtaattagc ccttaatttt gccaatacgc cttttaaagt tttatccagc ggggcggtaa
     6601 tgaccatttc ttcgccggtt ttggggtgtt caaaacgaat agcatgggcg tgcagaaata
     6661 aacgctgtaa gcccacttct ttcattttgc tgtcaaattc cgcatcacca tatttgtcat
     6721 ctaacgcaat cgggtgtccg gcatattggg tatgcacacg gatttggtgg gttcttccgg
     6781 taataggcga agctttcacc aaagtggcat tggcataacg ctcttcaatg ctgaaacggg
     6841 tttcggacgg tttaccctct tcactcaccc gtacaattcg ctcaccgctg gcaagttcgt
     6901 tttttagcaa tggagcttta atcactttgg tatgagcctg ccattgccct cgcacaaggg
     6961 caagatagtc tttttgtact actttttcac gcagttgttc gtgcaaggaa cgtaacgccg
     7021 aacgcttttt cgccaccagc aaaatgcctg atgtatcacg gtctatacgg tgtaccaatt
     7081 ccaagaaacg agcctgtgga cgtaatgcac gcaaggcttc gatcacacca aaacttaaac
     7141 cactgccacc gtgtactgca atgcctgaag gtttgttaat tactagcatt gactcatctt
     7201 catacagaat ttggctctcc agctccgcca ctttgtttaa tttagtcgaa attggggctt
     7261 catttttttc cgccacacgc accggcggca cacgcactaa atcatcaggc tgtaatttat
     7321 attcgggttt gtttcgtcct ttattcaccc gcacctcgcc ttttcgcaca atgcggtaaa
     7381 tcaaactttt cggcacgcct ttgagctttg ccaataaaaa attatctaaa cgctgtccgg
     7441 cttcatcttc actgatcgta aaaaattgaa cgccggcact aattactttt tctgttgtca
     7501 ttatcttgtc ttttagagaa aattttgctc taaattctag cacaaaaccg cttagcgagt
     7561 gaggcaaatt cgctaggctt atttttcatt ttaattttaa ggaaacaata tgactgaaaa
     7621 agtcaccgaa acagctccaa acattgacgt ggttgccgaa accgaaaaag taatccacaa
     7681 agtcagtaat atgaatattg aaactatgct aaatgagtgg attatccctt atggcaccaa
     7741 aattttactg gcgattgcga tttttgtagt cgggaaattt cttgcccgcc taattagccg
     7801 tttactcggt aaagccgcat taaaatcaac caaagatgaa atgctgcaaa gttttattgt
     7861 ctcaatcagc tattttttac tgctgttaat tgtggtgatt gcctcgcttt cacaaatcgg
     7921 cattaacacc agctcgctgg tcgcattaat cggtgctgcc ggtttagcca tcggtttatc
     7981 attacaaaac tcattacaaa actttgctgc cggcgtgatg ttgttaatct tcaagccatt
     8041 tcgcaaaggg gatttaatcg aaaccggcgg aatgaccggc gtggttgaac aaatggggct
     8101 tttagtgttg gaacttcgca ccggcgataa caaaaccgtg ttattaccaa acggcaaagt
     8161 gttttctgac agcatcatca actactctaa caacccgaca cgccgtattg atttcacctt
     8221 tgatatttct tatgaatcta acttaaaaga ggcgaaagag attatccaac gcattttaga
     8281 cgccaatact tatgtattaa aagatccggc acctgtagta gcagtcggcg ctttagcacc
     8341 gcatagtgtt caacttgttg ttcgcccttg ggttcagaca ccaaattact gggcagcata
     8401 ttgggaaatt atcgaacaag taaaattagc ctttggtgaa gcaggtatat ctattcctta
     8461 caaccaaatg gaattgcata ttaaaagcgg ttcactagaa aataaagcat aagaaaaaag
     8521 cctgtaagcg gtcttttttc gataaaattt tgcaaatttt gggcgaaggt ttatacttta
     8581 gctaaataat ctacgaacag gagcatatta tgcgtattga tacctctgca ctttgcgatc
     8641 tttattctga ccaagttgat gtggttgaac caattttctc aagctttggc ggtgcttctt
     8701 ccttctttgg gaagattacc acggttaaat gctttgaaag caacggttta attgctgaag
     8761 ttttggaaga agagggtgaa gggcgagtgc tgttagtcga tggtggcggt gcggttcgtc
     8821 gtgccttaat tgacgcagag ctggctcaac ttgctgtaga taacggctgg gaaggtatca
     8881 tcgtttatgg tgcggttcgc caattagata ttttggaaag attagatatc ggtattcatg
     8941 ctttagcgcc aattccagtg ggagcagata ataccgacat tggcgaagtg gatacgcctg
     9001 tgaattttgg cggtgtaacc ttcttccccg aagattacgt ttatgctgac ttaaccggca
     9061 ttattctttc gcaagagttg ttggatttaa acgacatcag cgaataaata tttgcaaaaa
     9121 aataccaaaa accgaccgct tggtcggttt tttactactg cagtgttttt aatgccgcat
     9181 tatattcttg agattgctgc aataaaaccc gagcagcttc acgtaattta tctacatcct
     9241 cttccggcaa ataaaatgat gttgcaatat ttagcacatc tttttttaaa tcaccatcag
     9301 gtaattcttt taaacctaaa ctgacaaaat gcatttcgat ctttgatggc tgtttatttg
     9361 catattcatt ccaaccatct gtaaactggc gataacgttg taaattaatt tgtgtcgttc
     9421 tatcaattgg cacattaact attgtattca ctacatcagc cacccccggt acatttgcgg
     9481 tcttatcgat ctcgctagat acttcatttt gcgcatttac attaatcact acaatatttt
     9541 tcaccctaag ctgatgaata tactggtaca tctcttcaat acccataaca tcagatattt
     9601 ccagcacact ggcaagccct aaattatctg ttaatccacc atcaactaaa tggataaagg
     9661 ggcgttcttt actatcttga taaaggctga gtatatgatt cgtttcttca atattttttg
     9721 taattagtcc atcaattgct ttttctctag cactaaattc ttgtggcata ctaaaatggc
     9781 aatttccacc attgttattc agtgtaagcg gcgcaaaaat cagaggaaca gaactagaag
     9841 cagcaacagc acgggaaatt tctaaatcat tcaaatttaa acaaagccca tcaaaggttt
     9901 cttgcgtaaa ggtcagtttt tgaccaatgt tcatgtctgt tgcgctaatc acagcaaaag
     9961 gtcctttacg atttttcact aaatcaccaa actttttacc atgataaagg gcaaaattta
    10021 agcgttcttg caataaatca ccacgcccat attgaggaga acttaaacga ggaagattgg
    10081 ataacgaaaa cacctctgta ataatatctt tttgaaagtt cgcttttaaa aaacggtcag
    10141 caaatttagg aatgatatcc tttccttcca acgcaaaata agtggctaat atcgatccac
    10201 ctgatacgcc aaaggcaata tctatattct ctaataaagt attaccttta tttgtttctt
    10261 tcacccttac ctttttaaac tcttccaaca ctccataacc aagcgccgcc gctcttgttc
    10321 caccacctga aaacatgatg acaacaatat taccgtcttt tgcactttca gcgatcacat
    10381 ttttttgtcg ataacctctt tcaacattta cctgtttaat tgtttcaact ggcttataaa
    10441 caaccaaact gcaagcagat aacactagcg taaaggcgaa gatgaaaagc tgttttattt
    10501 tgtttagaaa aagcataaaa accctaaatt aagatctatt tctacaaatt ataacctttt
    10561 tagctaaaga taaaagcggt caaa
//
LOCUS       DANMGB010000083        10501 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.083, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000083 DANMGB010000000
VERSION     DANMGB010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10501
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.083"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            42..686
                     /gene="sspA"
                     /locus_tag="PXG19_001549"
     CDS             42..686
                     /gene="sspA"
                     /locus_tag="PXG19_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL6066837.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            686..1093
                     /locus_tag="PXG19_001550"
     CDS             686..1093
                     /locus_tag="PXG19_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL6066838.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            1290..2249
                     /locus_tag="PXG19_001551"
     CDS             1290..2249
                     /locus_tag="PXG19_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066839.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            2329..2589
                     /locus_tag="PXG19_001552"
     CDS             2329..2589
                     /locus_tag="PXG19_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL6066840.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(2639..3529)
                     /locus_tag="PXG19_001553"
     CDS             complement(2639..3529)
                     /locus_tag="PXG19_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6066841.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            3659..6265
                     /gene="topA"
                     /locus_tag="PXG19_001554"
     CDS             3659..6265
                     /gene="topA"
                     /locus_tag="PXG19_001554"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL6066842.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(6315..7253)
                     /gene="yvcK"
                     /locus_tag="PXG19_001555"
     CDS             complement(6315..7253)
                     /gene="yvcK"
                     /locus_tag="PXG19_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL6066843.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(7267..8343)
                     /locus_tag="PXG19_001556"
     CDS             complement(7267..8343)
                     /locus_tag="PXG19_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6066844.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(8374..9129)
                     /locus_tag="PXG19_001557"
     CDS             complement(8374..9129)
                     /locus_tag="PXG19_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6066845.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            9281..9490
                     /locus_tag="PXG19_001558"
     CDS             9281..9490
                     /locus_tag="PXG19_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL6066846.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(9539..10261)
                     /gene="bioD"
                     /locus_tag="PXG19_001559"
     CDS             complement(9539..10261)
                     /gene="bioD"
                     /locus_tag="PXG19_001559"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL6066847.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
BASE COUNT         3287 a         1864 c         2208 g         3142 t
ORIGIN      
        1 aaccatttta ttttttataa atttaatcat cggagatata aatgacgagt agtataaaca
       61 aacgttcggt aatgactctt ttttcggata aaaatgatat ttacagccac caagtgcgta
      121 ttgtgttagc agaaaaaggg gtgccttatg aaatagagaa cgttatgcta ggcagtattt
      181 ctgaagattt attagaattg aatccttacg gtaatattcc tacattggtt gatcgtgaat
      241 tagtgctgtt taaccctcgt attattatgg aatatttaga tgagcgtttc cctcacccac
      301 cattaatgcc ggtttaccct gtttctcgtg gtcagtgccg tttaaatatg tatcgtattg
      361 aacaagattg gtattcgcaa attgatattg tgaataaaga tcctgaatca gcggaaggca
      421 agaaagcgtt agcacagctt aaagaagatg tattggcatt agcgcctatt tttgccgcta
      481 aaccttattt tatgagcgat gatttcagct tggttgattg ctatattgca ccgttattat
      541 ggcgtatgca aatcttaggc gttaaattca gcggtgcaac ggcaaaacca attaatgcgt
      601 atatgacccg tgtattccaa cgtgatagtt ttatccagtc tgttggcggc gaagcgccaa
      661 aacatttaat ggacgataaa gactaatgaa accattaaga ccttatcttt ataatgccta
      721 ctataactgg attattgata gcgataacac gccttactta ttagtgaatg cagaatttcc
      781 agacgtagat gtgccggtag agtttgtcaa agaagggaag attattttaa atatttcgcc
      841 tcgttccatc gggcagtata ttgtggctga tgaatacatt agctttagcg ctcgttttca
      901 gggaatgtta agagatattt atattccttt tggggcaatg gtggcgattt atgcgcaaga
      961 aaccggtgat ggtattatgt tccaagaaga agcctactac actgaagagg cttatcaagc
     1021 tcgagttaga gcagtagagc agcctaaaaa aatcaaggcg aagaaaacat ctaccttaaa
     1081 gttggtgaaa taagagatct atttcatcaa aacacattac aagcggttaa atttttctga
     1141 ttatttgcaa atatcagtca aaatttaacc gcttgtttgt tttgtgacgg aaataatcaa
     1201 attccacttg cactccgact aaaaattgct tatctttgtt ttgtgtttgt actgttgtga
     1261 tagtacagta atgatcttaa ggagagaaaa tgaaattcca taaaacctta ttagtgactt
     1321 tgttaagttc actttctgta gcggcattag ctcaagataa aattcaaaat gtagcaatta
     1381 cagcgattgt ggaacaccct gcattagatt caattcgtaa aggtgtgatt gaagaattag
     1441 cccgagaagg gtttgttgat ggtaaaaaca ttaaaatcga ctatcagtct gcacagggta
     1501 gtactgcaac agcagcacaa attgcgcgta aatttgttgg ggataaagca gatattatta
     1561 tcccgatcac cacaccttcg gcacaacctg ttgttgctgc aacacgttct atcccaattg
     1621 tgttttcagg cgtgacagac ccggttgctg caaaattagt aaaatcgtgg gagccaagtg
     1681 gcactaacgt gacggggatt tcagaccaca aagcgatggc tccacaagtg aaattaattc
     1741 aaacattagt accggatttg aaagctgttg gttatgtgta tagtgcaggt gaagttaatt
     1801 ctgcgattgt gttagaagag ttaaaacaag aggctcaaaa acagggcttt actatagtgc
     1861 cggttgctgt tcaacgcagt gccgatattg gcactgctgc tcgcagccta aacggaaaag
     1921 tgcaggctat ttatatttct gaagataatg cagttgtttc ggcttatgaa gccttacata
     1981 aagcggcttt agaagcaaaa attccggtga ttgctgctga ccgtgataca gtacaacgtg
     2041 gtgcagtggc agcttatgcg gttaatcaat atgatattgg tgtggcaacc ggtaaagttg
     2101 ctgctcgtgt attaaaaggg gaaaaagcag gtacaattcc aatccaagaa gtcagcaaat
     2161 tagagctttc aattaatact aaaacggcaa aagaattggg cattactata ccagaggtat
     2221 taatcaaaga agctaaacaa actttttagt gtaaaaaata aaaatttgtt ttatttgtca
     2281 taatcttgta gagtaaaaat tcatttcaac tcagctaagg agaatattat gggatggatt
     2341 gctgcaatta ttgttggcgc tataattggt tggatagctt cggctgtaat gaaaagtgaa
     2401 ggcggacttt gcaaaaatat tattattggt attttgggtt cgtcacttgg acgctgggta
     2461 tttggtgatg tattaggtat tggttccgct tatagtgccg gagactttaa tatagtcggt
     2521 atcttttttg gtgtattagg ggcagctctt ttgattttca ttttgagaaa attaagcata
     2581 attaactaat ttcgtatttc agaaaggaag cagttgtttt ataactgctt cttttttgtt
     2641 aaatatactc tttttgctct tgcatcagtt gtgtgaaaaa atcaattagg attcgcactt
     2701 taggagagag ataacgacgg tttggataga gtaagctgat ttgtaaaggt tcctgtgtca
     2761 aaaaaggcat aataggaatc aactctccgt tttttagctc gtgttttatt aaaaactttg
     2821 gaatgttaat gatgcccaaa ccagcttttg ccatttgtac taacgcataa ccattgttac
     2881 tgtaaatttt accttgtggt ttaatttgca ttttttgtcc ttgttgagaa aattgccatt
     2941 gaggatggta ttcatagagt aggcagtctc gttccactaa tgcttctaag cctttaggtt
     3001 cgccaaatcg agctaaataa tctggagaag caactaaaac caaatgggaa tctgcaattt
     3061 ttttcgctac aatggaacta tctgcaaggc taccaatacg cagcaccaaa tcaaagcctt
     3121 ctgcaatcac atctacccga cggtcactaa attcaatatg aagggctaaa ttagggtaat
     3181 cttccataaa tttcccaagg taaggggcaa tgaagcgaga gccaaaatcc attggtacag
     3241 acattgttat tttcccttgt agcgttgagt taatattact tacgctggca tcggcctctt
     3301 ttagttcatt taaaataggc aagcattgct gatagtagag caaccctgcc tcagttggcg
     3361 taatttttcg agtggttcgt tgtagtaaac gcacattgag atgttcttct aactgagcca
     3421 ccaatttact tgccatgggt aacgaaattt gagcttgttg tgctgcttga gtgaaacttt
     3481 gggtttcaat tactttacaa aataaactga ttgcgtttag tttatccatt ttctctcttc
     3541 tttatattgt aatttgtgtt aaggcttgct atcgtaaaaa tagtgtctaa aaaaatcaac
     3601 ttaaaaagaa ataatttcaa acaatttaaa ataattatta aaaattaggt aataaattat
     3661 gggaaaatca ctagttattg tggagtctcc ggctaaggca aaaaaaatta accaatatct
     3721 tggtagtaat tatgtggtga aatcgagtgt ggggcatatt cgtgatttac cgaaaagtgg
     3781 tagtgatgaa aaaacggaaa aagcgaaacc gatttcaacc aaagggctga ccgctgccga
     3841 aaaagctaaa atcaaagcag aaaaagagcg tgttgcattg gttaaacgta tgggtatcga
     3901 cccctataat ggctggaaag ctaactatca gattttgccg gataaagaga aagtggtttc
     3961 cgagctaaaa tcgttggcaa agaaagcaga tcatatctat ctggcaaccg acttggatag
     4021 agaaggggag gcgattgcgt ggcatttgcg tgaaatcatt ggtggtgatg acagccgttt
     4081 tagccgagtg gtatttaatg aaatcaccaa agatgcgatc aaaaaggctt ttgacgatcc
     4141 gcaaccgctc aatattgacc gtgtaaattc ccagcaaacc cgccgctttt tagaccgtgt
     4201 agtgggcttt atggtgtcgc cattattatg gaaaaaagta gctcgtggtt tatcggcagg
     4261 gcgtgtgcaa tcggttgccg taaaattact ggttgagcgt gagcgtgaaa tcaaggcgtt
     4321 ccaaagcgag gagttttgga ctattcttgc caatacgcaa attaatcgta aaaaattacc
     4381 gcttgaatta actacttata aaggtaaaaa attctcggca agcaatgagg ctgaagcaaa
     4441 tgttgcagtg cgtgctttgg agcagagcga ttttattgtt tctaatattg aagccaaaga
     4501 aaccagctct cgagctgctg caccatttat tacctcatcg ttacaacgtg ccgctagcac
     4561 tcgtttaggt tttggggtta aaaagacgat gatgttagcc caacggttat atgaagcggg
     4621 ttacatcacc tatatgcgta ctgattcaac caaccttagc cgtgaagcat tagcaatggc
     4681 tcgaggttat attcaggata atttcggggc gaattatttg ccggaaaaag caaatgtgta
     4741 tcgcagtaaa gataatgccc aagaagctca cgaagccatt cgcccgtcgg atgtgaatgt
     4801 caaaatggcg gatttaaaag gaatggataa agatgccgag cgtttatacg atttaatttg
     4861 gcgtcgtttc ttggcgtgtc aaatgttgcc tgctcgttat gattctaccg cagtcacagt
     4921 gtctgccgga gactatgaac tcaaagcaaa cgggcgtgta ctgcgttttg acggctggac
     4981 gaaagtactg ccggtgcaag gcaaaaatcc ggaagatcag gaattaccgg cggttgaact
     5041 gcatcaaaaa ttaacgcttg atgaaattgt gccaagtcag cattttacta aaccgcctgc
     5101 acgttttaat gaggcgtctt tggttgctga gttagaagag cgaaaaattg gccgcccttc
     5161 aacctatgct tcaattattt cgacgattca agaacgtggc tatgttcgca ccgaaaacaa
     5221 gcgtttttat gtggaaaaaa tcggtgaagt agtgacggat cgcctcaacg aatcattcaa
     5281 agatttaatg aattatgatt tcactgccaa tatggaagag gtgctcgacc aaattgcaga
     5341 ggggtctaaa aattggaaag aagagttgaa tactttcttt aaacatttct ctgaagagtt
     5401 gagccaagca gaattagatg aacttgaagg cggaatgaaa ccaaacagcc ttgtgccaac
     5461 cgatattgat tgcccgactt gtggacgaaa aatggcaatt cgcaccgctt ccacaggggt
     5521 atttttaggt tgcaccggct atgctttacc gccaaaagag cgttgcaaaa cgacaatgaa
     5581 tttaattcca gaggcggaat ttttcaatgt gttagattcg gattctgaaa ccaaagccct
     5641 aatggctcgc aagcgttgcc cgaaatgcga ttcggcaatg gatagttatg tgattgatgc
     5701 tgaacgtaaa ttacacgttt gtggtaataa tccaaattgt gatggtcata ttattgagca
     5761 aggttccttc aaaattaaag gctatgacgg acctgtagtg gaatgcgata aatgcggttc
     5821 agatatgcac ttaaaactgg gtcgtttcgg caaatatatg ggctgcacaa gctgcgataa
     5881 cacccgtaaa attctgaaaa acggggaagt tgctccgcca aaagaagatc ctattgcttt
     5941 tcctgaatta aaatgtgaaa aagccgatgc ctattttgta ttaagagacg gagcaagtgg
     6001 ggtgtttatg tcagctcata acttcccgaa agtgcgtgaa agccgtgcac caaaagtggt
     6061 agagttagct caatatcgtg aacgtttgcc ggagaaattg cagtatcttg ccgatgctcc
     6121 gcagcaagat ccggaaggaa acgaggcaat tatccgtttt agtcgtaaag agaaacgcca
     6181 atatgtgact tctgagaaaa acggcaaagc caccaaatgg attgttgatt atctagacgg
     6241 taaatgggtt gagcgtaaga aataaagctt aaaagacaag cggtaaaatt ttctaaaaat
     6301 tttaccgctt gcttttagat gttctgagcg agtagttcat caattgcttt acttaattta
     6361 ttgcgatcgt gtcggtaata aacgtcattc gcagataagt tttttcgcaa gatttgaata
     6421 tgttcgggaa gttcagaacc ggcatcatca gtcgtaatta ccgcattaat tctagcctgt
     6481 ccgatacagt tctccatcca ttcaattcgc tgattaagtg atagttgccc agctgggcca
     6541 tgttcttgtc cgatattgtc aataaatact actcgggctt tgctttgagc aatagagttt
     6601 gctatgcctg ccaccagcaa attcggcata atactggtaa aaaagctacc tgggcctagc
     6661 agtattaact cagcactttg aatagctgaa atggcttctg gtgtagcaac aaccatagta
     6721 tctaacgcta aatgttgtgg tgtttctgct aaagaatcaa tttgcacttc accaaatact
     6781 gattcgcctg aatgcaactg tgcaattaaa tgcaccggta tttcagacat tgggataagt
     6841 tgcgatctta cgtgcaataa ttctcgcacc aaattaatcc cttctagcgg tcggatttgc
     6901 atattttcaa gggcggtgag aattaaattg cctagattat gtccagcgag ttcgcctgtg
     6961 ccagcaaaac gatactcaaa caaccgagaa gctatcgttg gtttaacgat aatttgattt
     7021 aaacagttgc gtaaatctcc ccaagcaatc accccttgtt gtgaacgtat tctaccggtt
     7081 gagcctccat tatcggtagt ggcaacaatg ccggtaagcc gttcctttaa aaaagagagc
     7141 gcggagagca atcgacctaa gccgtggccc ccacctagtg caacaactgc attgagttgg
     7201 tttaaatagt gatgtcgggt aggtttaaaa ggaataatat ctgtattttc catcttggga
     7261 tttcgtttat ttttctaaaa taatggcatc tgactgggct gaaggcaatg cttgtaatac
     7321 agctttaacc aaagtcgcta aaggaatcgc aaaaaacact ccccaaaagc cccataaacc
     7381 accaaagatg agtacggcaa taataattgt cagagggtgt agatttactg cttcagaaaa
     7441 taaaaagggt acgagtaaat ttccgtctag caactgacta ataataaatg cgagcattaa
     7501 atagtagaaa tccggcgata acccgaactg gaatagagca attaacatta ccggaatgct
     7561 gactaaaacc gcaccgatgt agggaactaa cactgaaatc cctaccgcta cagaaagtag
     7621 taacggatag cgtaaatcaa aaaagaggaa aataatataa gtgacaaccc caacaattag
     7681 aatttctaaa aatttacctc gaatatagtt ggcaatttgt tgttgcattt caaaccatac
     7741 tcgtgttgca agtcgacggt tttgcggtaa tactttacta aaagaacgca ttaaaacgat
     7801 tttatctttc agtaagaaaa agaccatgag tgggactaag aaggtgtaaa tgcctaagcc
     7861 aactaagctg atgatagagt taatcgagag tgttagaagt gattctccca tactcaaaat
     7921 attactttta gcggtattca caatggaatc tagggtcgca taatctacta attcagggta
     7981 atgctccggt agggcttgta accaagcatt gagcagatta aacatcgaag gtaaatcttg
     8041 aataaaggta actgcttgat tccaaaggct gggtagtagt actacgccta aaaaagataa
     8101 taaagcgatg aaacctccta gtactagaat gacactcaaa gttcgaggta atttgagttt
     8161 gctcgacaaa aaacggattg gccattccaa taaataggca aacacaagtg caaccagaag
     8221 gggcataagc agatcgctaa aaaaatagat aataccgaaa ccgatcaata gaatactaaa
     8281 cagcacaact atttgcgggt cggtaaattt ttttcgatac caatcttgca acatttgaaa
     8341 catatggatt gcctttaaat tatgcgatga aaattatttc tggctacaga ctgcaatgaa
     8401 ccctagcttt ttgtccgggt cattaaatag tttgtacatt ttattaaagg tttcgcgatt
     8461 ttctggtttt aatgcattgc cgataatttt catggcgcct aaaacacctt catcatgaat
     8521 cagaccttta ggggaaagta gagacatttc tccggaaaag gtatcaacat tacggaaacc
     8581 acaacgttgg aataatgatt tccagtctgc tttagcaagt ggagagacag tgatattgat
     8641 tgcatcacgc aactcggcta ataaagtatc ggagtcttta tcttggataa caatatcgtg
     8701 cgttaataaa aagccatttg gttttaatac acgaaaatat tcacgtattg ccttttcttt
     8761 cgcttctaga ggaagcattg tcagcatggc ttcattaatt acaatatcaa aactttcgtc
     8821 gtcaaatggc agttttgttg cgttggcgcg ctgtacttga attaaatgct caacatggtt
     8881 ttctttgata tttttacgtg ctttttcaag cgcatcttcg tctaaatcaa taccaacaat
     8941 ttggcattca aattgttgag ctaattggat tgcagtagtc cccatgttac aggcaacttc
     9001 gagcactttt ttatttttat caaaatcccc gtttgcaatt aaccaatcag ttgctaattt
     9061 ccccccgggg cgtaaacgag ttttgcctaa acgagctaaa aaatgatgac caacttcttc
     9121 ttttttcata aaaacctctg gatttgcaaa atacgttaaa tatatgaccg cttgtattgt
     9181 gatctatgtt cgttattata ctcaattttt tcattttctt atatacaaca tcaacagatt
     9241 ttgccagaat acaacctcat tttgatatga ggaaaataga atgagtaagc aaaagaatga
     9301 ttacctccac cagcgaggtc aaattaaaga aagtgcagta aaagcattag tgactgatcc
     9361 actttttaga caacgtgtag aaagaaatcg taaagggaaa gggagctatc gcagacaaga
     9421 aaaacacaaa aaaactatct atgggcaaaa agaaacccca tttaaaaata ttcggttaga
     9481 gtctttttaa atggggtttt atttgtagct tattgtagtt ttataagcct gataaacact
     9541 atggtttact gaaataggcc aacaacggtt ctggattttg aatataagaa gaaagttctt
     9601 tatgctctgg gtgacccata tagggaattt gcccaagtaa aggcgcatta attttttgtg
     9661 tcagtagttc aattaattcg tgataatgcc gtagccctgg atttactctg tttgcgaccc
     9721 aacttactaa ttttacacca cgctgcaaaa tttcattcgc agtaagtagt gcatggttaa
     9781 cacaaccttc cttaattccc accactaaaa caaccggcat attgttttgc attacccaat
     9841 cagcaaaata gtaatccttg ttaataggag ttagccagcc ataggttcct tctacgacaa
     9901 catttggata ggcattttct agtcgtttta aatctgtgtt taatttttcc agttgaatat
     9961 gatgaactgc atctaaagct gcaaatacag gggtactgga atgaataaaa gtatagctat
    10021 taatatcacg atagctaaca ttagttggac agctatctag tatggttaat acgtctgaat
    10081 tatcttcagt agcataatca tattgagtag gttctgtggg taatgaatca tcaccgccac
    10141 aagcaatggg tttatagcca attacaggaa aactatgttt tgtaagtgtc tgtatgatgg
    10201 ctcgggtaac cacagttttc cctacgttgg tgtctgttcc ggtaataaat aatgagggca
    10261 taaatggctc ctttcgaaaa tatggctggt agtttaacca aaaatagatc aatttattct
    10321 gtctttgatc aaatttccgt cataaattcc ttgttttatt gctgaacagg caattaatgg
    10381 actattccaa tcgtattggc tggtaactaa atcgattttt aggtttgttt gtaacaaatt
    10441 tttatgcaat ttttctgaaa tttgcgtaaa taacggctct tttattttga tcaatggcga
    10501 g
//
LOCUS       DANMGB010000084        10279 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.084, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000084 DANMGB010000000
VERSION     DANMGB010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10279
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.084"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..672
                     /locus_tag="PXG19_001560"
     CDS             <1..672
                     /locus_tag="PXG19_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL6066848.1"
                     /translation="YQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIF
                     RGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEAGKVGLELDD
                     TADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVDKWKGSVEDGIEHIKSY
                     GKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYALTPLMQVKSA
                     KGVLL"
     gene            669..2045
                     /locus_tag="PXG19_001561"
     CDS             669..2045
                     /locus_tag="PXG19_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL6066849.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            1999..2937
                     /locus_tag="PXG19_001562"
     CDS             1999..2937
                     /locus_tag="PXG19_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6066850.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            2924..4294
                     /locus_tag="PXG19_001563"
     CDS             2924..4294
                     /locus_tag="PXG19_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL6066851.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            4287..4721
                     /locus_tag="PXG19_001564"
     CDS             4287..4721
                     /locus_tag="PXG19_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066852.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            4736..5725
                     /locus_tag="PXG19_001565"
     CDS             4736..5725
                     /locus_tag="PXG19_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL6066853.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            5737..5943
                     /locus_tag="PXG19_001566"
     CDS             5737..5943
                     /locus_tag="PXG19_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066854.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGQKGKKDKGK"
     gene            5946..6323
                     /locus_tag="PXG19_001567"
     CDS             5946..6323
                     /locus_tag="PXG19_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066855.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            6323..6667
                     /locus_tag="PXG19_001568"
     CDS             6323..6667
                     /locus_tag="PXG19_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066856.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            6669..7037
                     /locus_tag="PXG19_001569"
     CDS             6669..7037
                     /locus_tag="PXG19_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6066857.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            7034..7414
                     /locus_tag="PXG19_001570"
     CDS             7034..7414
                     /locus_tag="PXG19_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066858.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            7418..7900
                     /locus_tag="PXG19_001571"
     CDS             7418..7900
                     /locus_tag="PXG19_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6066859.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(7940..8356)
                     /locus_tag="PXG19_001572"
     CDS             complement(7940..8356)
                     /locus_tag="PXG19_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6066860.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(8412..8588)
                     /locus_tag="PXG19_001573"
     CDS             complement(8412..8588)
                     /locus_tag="PXG19_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6066861.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            8684..9355
                     /locus_tag="PXG19_001574"
     CDS             8684..9355
                     /locus_tag="PXG19_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066862.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(9370..9603)
                     /locus_tag="PXG19_001575"
     CDS             complement(9370..9603)
                     /locus_tag="PXG19_001575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066863.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
     gene            9772..10230
                     /locus_tag="PXG19_001576"
     CDS             9772..10230
                     /locus_tag="PXG19_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066864.1"
                     /translation="MKKMIVFVASVLSSFVIASDWEIIEAAQNKVKAELIRKSEKKAE
                     LCLNVAQAVLITNQKVQKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIE
                     SDYIYQRATKDFYFNYNGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK"
BASE COUNT         3069 a         2109 c         2429 g         2672 t
ORIGIN      
        1 taccaagata atccttggtt tcctgatgtg ctcgagcaag agcggctaaa tgacaaacag
       61 cggcttgatg atgcgactta tcgctggatt tgggaaggtg cttatttgga agcgagcgaa
      121 gcgcaaatct ttcgcggtaa atatcaagaa atggaatttg tgccgaaccc tgattttgat
      181 ggcccatatt acggcttaga ttttggtttc gcgcaagatc cgacggcggc ggtcaaatgc
      241 tgggtattta atggcgatct gtacatcgag tttgaagcag gcaaagtggg cttagaactt
      301 gacgacaccg cagactttat tgccaaaggc gtgccacaaa ttgccgatca cgttgtgcgt
      361 gcagattcgg cgcgtcctga gtcaattagt tacctcaaac gtcacggctt accgcgcatt
      421 atcggcgtgg ataagtggaa aggctcggtt gaagatggca ttgagcatat taagtcctac
      481 ggcaaagtct ttattcaccc acgctgtcag caaacgctca acgaatttcg cctttattcg
      541 tacaaaaccg accgcttgtc gggcgatgta ttgcctgtcg tgattgatgc ccataaccac
      601 tttattgatg cgctacgcta cgccttaacg ccgttgatgc aagttaaaag tgccaaagga
      661 gttttactat gagcctagag caagacagac tggctttttt agccgaagcc ctagggcttg
      721 gcaatatcaa acgaagaacg ttatggaagg agtttggcta ccctaatacc ttaacattca
      781 accatttctt aaaagcctat aagcgcaata gtatcgcttt tgcagcgatt aaccgcttac
      841 ttgacggttg ttgggttgac tgccccgtaa tcgttgaggg tgagcaaaag aacgaatcaa
      901 agcagacaac cgaatgggag tccaaagttg aacgttttat gaaacgctac tggtcggcaa
      961 tcaaagaggc agatagacga aaccttgtcg gtaactattc ggcgttatta cttcaagtaa
     1021 gagatggtca acaatgggat cagcctattt tgcaaggcgc gctatctagc attggagagt
     1081 tcggactggt taaactgatc cccgtgtggc agtcacagct ttcagtgaca gagtttcaag
     1141 aggatgtgac cgccgataat tacggcgaac cgctgatgta tcaattcagc gaatctgcct
     1201 ttggcaaaaa aagcgtgtca cgaaatatca aggttcacgc aagtcgtgta attttgctca
     1261 atgagggtgg cgactttaat tcccctcatt ctggagttcc tctgcttgag gcgggttaca
     1321 acaagctagt tgatctcgaa aaaacatcgg gcggcagcgc cgaaggtttt ctgaaaaacg
     1381 caagccgaca attagggatc aaattaacaa aagatgttga tttgagacag ctcgaagaca
     1441 gcgcaaaagc ccttgggttt tcttcatttt ctgatgcgtt gaacgacaag atcaagaaaa
     1501 tcaactcagg aacagactca gccttgatta ctcacgaagg tgatgcctct gtgttgtcag
     1561 tcgcaccagc agatccgaag ccaacgtggg aaatttctgc aaatgagttt gccgcctcag
     1621 tacaaatccc tttcacgatt ttgttcggac agcaaacagg gcgattggca agtgacgagg
     1681 acaaaaccga ctgggcaaac cgttgcaacg gtcgtcgaaa tggttttctc accgatgtga
     1741 taacacaact acttaatcgc ttgtggttca tcggtgtgct acctatgcca aaaaatagcg
     1801 atgtcacagt gtcttggtct gacttacttg caccaagcga aaaagagaaa atcgcaaacg
     1861 cacaggcttt ggcttcagtt gcaactacat cgcagtctgc ctttggtttt gccgcggtaa
     1921 cagcgaacga aatccgcgaa tctttagggt ttgaacctct gcctgataat ctgattccgc
     1981 caacaattga cgacgaaaat gaagatcaag acgaaaatca agccactgcg gattccgaca
     2041 aataaagccg atccgctcaa tatgggagtg tcggttgcca agctatttcg tcacattgat
     2101 gtcatttact cacaaattaa gcgctccatt aagcaacaaa tcttgcaaaa gatgtcactg
     2161 cgactgcaag caaataattt tgagtatttt ccttcgtatc ttactgcgac tgagttggcg
     2221 gatttgcttg aaaccttgca aaagattatc gacaaagaga ttttgtcgaa tggttctcaa
     2281 ggcgaaaatc tctggtttga ctcctatatc gacgaagcag cactaaaagg cactcagtct
     2341 gcggtcactg atttaggtct gcaatcagag gcttatcgca gtcagcgaaa cttatcatca
     2401 atcgttttca gtcctgcgta cttcaatcga ttggcgattg cacacatggc aagttatagc
     2461 gagtggcaag gtttaagcga cgagttgcga aaatctttgg cgggggtgat cacggaggcg
     2521 gttttaaacg gcaaaaacgt gaaagaaact gcccgtgaga ttcggcaaaa acttgatgtg
     2581 tcatcaaaac gggcgaagcg aatagcgcaa tcaagccagt tggcggcata tcgtcgggca
     2641 gaatggcaag aggcggaaga ggcaaaagaa gaacttgggc taaacaccaa gctcttacat
     2701 ttttcagcgc tcaaagctac tacgcgatta gcacacgccc aacgccacgg caaatacttc
     2761 gatgttgcag aggtgcgcga atggtatagc cgagacggca accaattcaa ctgttactgc
     2821 aagcagtctg tggttgtggt caatgccgac ggtaaaacag atattgagcc tctccttgtt
     2881 gggttggcta aagaacgtaa acaatgggta ggagcattaa aaaatgtcaa aaaataacgt
     2941 gaacatcgtc accgtcatta acagcaaaaa tatcagcaca gaatctattg acggagatca
     3001 acacctgatt atccgcggcg ttgtgccgat tgttgatgat gttgtgatga acgacggact
     3061 ttatcctgcg gatgaaatca ataaaagcta caacagctta gagggcaact ttatgccgct
     3121 tgggcatcca aaaatcgaag gtaaatacgt ttcagcccaa gatgttcgag cggtgaacaa
     3181 acatcacgtc ggtgcgtggg cgaagaacgt acgcaaggaa agtggcaaag tgctggtcga
     3241 tatgtatatc aaccgccgct ttgcggaagg ttcagaacag ggcaaaacct tgcttgaacg
     3301 acttgacgga atggtgacaa acaccaacgc tgaacctatt cacgtttcca cagggctgat
     3361 tctaaacaaa gtcaagcaat cgggtaaatc caaaggcaag aaatatagct ggattgcgac
     3421 aaatatgtcg ttcgatcata ttgcaatatt gcttgatgtg ccgggcgcgg cgacacctga
     3481 tgatggcgtg gggatttttg taaaccaaga cggaagcgaa atgggggtgg aaaatgtaaa
     3541 cctaacacaa gcggcggatt accgcacaga aaagctgttt gacaaagtac gattttacct
     3601 gatggcgaac tcagatttat cgtttgaaga aattcatcgc gcgctgcgtg aagctattcg
     3661 ccccgaaggc aaagataagt ggtcattttg ggtcgaagct gtttacccga aatacttcat
     3721 ctattcggac gataacagcg gcaagaaata caagcggagc tattttattg acgaaaatga
     3781 caatgtgcaa ctcactagcg aacctgtcga agttgtcaag aagattggct acgaagaaat
     3841 tacaaccaat gaggaacata atccaatgaa aaccaaaatc ttagccgtgt tgaatgcggc
     3901 aaacgtgaaa acggaaggct taaatgacga tcagctcttg gaagcctaca acaagctgca
     3961 agcggataag ggtaaagagc ctgaaaagcc taaaaatgaa gatgacagcg aaattgatga
     4021 gaaaatcaag aaagcagtca atgccgcgat tgagccactc cagcaagcct tgcaagctaa
     4081 tactgacaaa gagcaagcag caatgcgtgc ggcggtgaaa gccaagttca atatgagcga
     4141 tgccgcagtc aatgctttgc aaggcgaggt attaactgag ttgtatgcgc aaacgcaaca
     4201 atcggtcgga ttaaacaata attcggccaa cggcaacggc gacaatcaat gggatggtta
     4261 ctcactcaac caagaggaga aaggcaatga gtaatgtaat ttatcgcggt tcggtcaagc
     4321 gtgaacctca aacggtgaat atcgtgatca acgatacttc ggcaccgggt gcagtagtta
     4381 aactccacaa cggcaaatta gaggcggcgg ctgatttaaa aggtcgccgt tttttattgg
     4441 gcaacaaccg ctttaagggg cagacaatcg aacaagcgta tgcgaagggc gatactgcaa
     4501 cggcgtttcg tttagagcct gaacaggagt attacgcgca aattgccgac ggcacttata
     4561 actttggcga tgaactcacg gtaaaacaag cgggcggcaa actgaccaaa gcggagacgg
     4621 gcgatgtagt gctatttttc ttcgacgaag aatcgcagcg tgtaatcagt ggcggcaaag
     4681 gctatgccga tgtcgtggtg gcaaacgcct acactaaata agaggtaaca aagcaatgtt
     4741 gaaattcaca aaagaacaag aacgcttcgt gattaacgag cggatcaatt acgacaaaaa
     4801 acacgcgcta atggcagcaa attcggcggg gttattgggc aacgcgatga ctttgccgaa
     4861 agatgtctgg gcggaatggg atcgtgatgc agtgcaaatt cagcgcgaag aattggtggt
     4921 gtttaacgat ttagcgggca tttcaaaatc aatgccgatt ggcaaactta ttcaccattt
     4981 ccaaacggta tctgatagcg gttcggttaa tatctcatta gacggtcgtt catcagcgaa
     5041 aaccgataac gtggtgctta actaccacgg tacaccgttg ccgattattg attccacttt
     5101 ctcttttggc tggcgcgata tgtcggcagc tcaaagcgaa gggtatcaga tcgacggtgc
     5161 agcacgcgcg aacagtctcc gcaaggtggc tgaaaaaatg gaagatctcg ctttaaatgg
     5221 tgattcctct attgtggttg gcaatgccaa gctttacggc ttgcgtactg cgccaaatcg
     5281 tatgactaac acacacaatc tggatttagc cactgcgaca ccgaaagaaa tttacgatgt
     5341 gttccgtgac ttgattagca aattccacgc gaagaactac tactctcctg taacgcttta
     5401 tgtgaactat ggcgactatt tcgcaatgag tacacgtgat tactccgagc agaaatccga
     5461 aggatctatc ttgaacaaag tgatgacgat tccgcaaatt gcgaaaatcg tgccagcaag
     5521 ccgtgtaccg caaaatgaaa ttctcggctt gtgcaagcgt tcggatgtgt accaagtgct
     5581 taacggtatg ccgttagtga ctcgtccgat tgcgcgccat aatgaaaccg atgattactc
     5641 gttccaaatt atggcagccg ttgccgtgga gttcaaattc gacgataaag gcaatgctgg
     5701 ctatatccag tacactaaat cctaaggcgg tgcaaaatga agtggctatt aacacacgat
     5761 agccacgagt tgaagaaagg cgatgtttac gaaggcgaaa cattaccgct ttggcttgtg
     5821 ggcaaagcta tcgaaatcga agaaaaatcc tttgaagttg caacgccttc tgatcacgct
     5881 gacggcgaaa ctggcgaaac tggcgaaact ggtcagaaag gcaaaaaaga taaaggcaaa
     5941 taactatggc agcagaaata gagctatccg aagcgcgaac aacgcttgac gaactgggtt
     6001 tcacttcgcc gaactctctg cttgagcttt acgttcagca aacgaacacc ttagaccagg
     6061 cgttgaacaa atcggggtac agtgaagaaa cacagaaact gatcaagctc tatctggttg
     6121 ctattcttgc aatttcatct ggggcgcgcc gtataaagtc agaaggtgcg cctagcggtg
     6181 caagccgaac gtttgagtat gatccaaacg cgctagacaa ccttaagtcg gcgattcgct
     6241 caattgatcc gaaaggttgc gctgaaagtt tgctacccaa agataaagtt gtcggctttt
     6301 tcgatgtggt cggaggctgc taatgtcaaa tttatcgaat tggtcctaca ccgcaaaagc
     6361 cacgctttgg caggctaaag gaaagaacga tgacggcgtt ttagtttttt ctacgccaca
     6421 aatcatttcc tgtgactacg gtgcagatag aaagcgcgca cgttttgaga ttgggcgtga
     6481 acaagcggtc aaaaatgtga tctggacgga gttcgcccac gccaaattag gcgattatgt
     6541 tctgattggc gaaagcgagc aagccgatcc gattttggct ggcgcagagg aaattattca
     6601 tatacagcgc tttgctgata cgttcgaccg caatcgtgat gattttgcgc tgataacagg
     6661 cgggtaaaat ggggatcaaa gtaaaaggca taagacaggt caagcagcgg ctgaatcagg
     6721 ttgttggcga ggttcagagc caaaaagcaa ctcgggcaat gtttcgcatt ttgaatgcgg
     6781 ttgcccctct tgcggcgcac tatacgcctg ttgatacctc aacgttgatc aacagtcaat
     6841 tcactgaaat ggaagtgaac ggcacacgct tgattggaag agtgggttat tctgctaatt
     6901 atgcggctta cgttcacgat cctaatatca agcaaaactt ccgcaagcct tcagcgaaga
     6961 aagagttttt gacttccgcg ctgaacgaat caaaggctac gatcaaatcc attgttaaag
     7021 aggagttgtc actatgattt cttatgtcaa agccttcaaa caatggttag aggctcactc
     7081 tcttgcagac ggctatgttg tgcagcttta ccagtgggag gatacgcaaa aagccaagcc
     7141 tgttattgtt attcagccaa atagtggttc gccgcaagtt tctgacctga gcagcgaaca
     7201 ctatctgcta attagccttg ttgcaggtaa aaattcaggt tacacaatcg aagagcgagc
     7261 aagggcgatt atgtcaaaga ttttagttga gcctttcgct tcctttggtt acatcgaatc
     7321 aatgggcgga ttacccgccc caattttcac cgaagataat cgaatgattt ttcgcttacc
     7381 acttcggatt atttcaacaa atcaagagga gtagtttatg ggttctccat ctccacaaaa
     7441 taacgcagaa aatctcgtgg tggggcgtgc cgtagtttta gagtacggta cgactgatgc
     7501 aaagccacaa gaaagcgaat ggaaggttgc gggcgcaatg acgacaaaga gttgggattt
     7561 tagcccaaat tcggttacat cagaggctga tgatgctggc ggcttccctg aaaccttaat
     7621 tacaaactca gactttagta tttctggtga cggtgagtgg cgcaaacgac caaaatcgaa
     7681 agaactaggc atcaaagatc tagttgtgtt atacgcaaat gcggtaaaaa atcgcaccca
     7741 accttacatt tgggttcgtt tgaaatacgc aggcttaaca attctcggaa aaatggttat
     7801 cactgcatta agtagcgaag ccccaaccaa tgacttagtg aaattctcta tagagttcaa
     7861 ggttggcgat tcaagcacta tcgaaattgc tgcagcgtaa aaaatcccac cctctataac
     7921 aagagcggtg ggattatcat tatcctaggg atagttgtag gggctttcct aagctagcca
     7981 aaatacgacc aatagtgtcg atttttgtaa tatggcgagg ggctaaaatt cgctgtactt
     8041 ctggcggacg gatattagtt aatcgggcaa tttctgcctt gcttaccgct tgttcttgca
     8101 ttgtattatg caaaagcact tttgcgtaga tgctctctgg cataaacaca ggcacttcgt
     8161 cggtatttac tgggcgagtg agcggaaagc gtctatcttc atcgaaataa atttcaacac
     8221 aagatagtag cacgtcttct gccatttcca ttgcttcttc aaatgtatcg ccttgggtga
     8281 tagcttctgg caaatcagga aatgtcacta caaagccccc ttcttcagcg ggggtaaata
     8341 acgctggata aaacatattt tctccttatt caagggtgta gtgaaagccc cttaacatca
     8401 ggggctttat attattttaa gcctagttgc tttttaaccc cttccactaa gcctgttttt
     8461 aactcttggc ttgggtgttt ggggaggtgg cttcttttgc ccttgtagta gagtttcaaa
     8521 tgctttgatc cattttcaac ctctacccca ttagccttta gccaccttag gaattcgctt
     8581 tgcttcacta cctcctccta tttgtttaac ttgggttcat tatatgcaaa aatgctaact
     8641 ttgtcaacag aaagttagca aaaatgctaa tttttttgtt gaggtgaaaa tggttagcta
     8701 tccaattact gaaattggtg aaatgcttat tgcaaccgat gggcgagact ttttattcag
     8761 accgagtttc aaaaatatct acaaaattgg aagcccacaa gaaattgtaa aaatctatgc
     8821 actattgcac ggctgtgaga ttcgagagat attgccgcac attttaacca aatcggagtc
     8881 tcatcaatct tacttttggt cagtgctgaa ttcgcctgtt tttggcagaa aaattctgca
     8941 aaacgcaatg atcgtgatgt cgtgctgttg cgatgatgat atttccctgt tgattggcga
     9001 gtggttgccg tcaaagtctg gcgttaggta caagttgggt aaaatgccac ctgagacaat
     9061 tatcaatttt gcaaaaaatt taatgggtca cggagtgatt ggttgctgcg aattgccaaa
     9121 gaaagaacaa tctgcaaaaa atgaattttc agaaagtttt gatgctgttg agtacataag
     9181 tttagcccga actcatttca atatgagccg cgaagacgct gaaaatctca cgatgaccga
     9241 attgcagcaa cttctaaaaa gtcaaatgcc tgccgaaaat aatagctatg gacagttcac
     9301 cgaagaagag tacgacagaa ttatggcgga atatgagaaa agaagagcgg cttaaatagc
     9361 cgctaacatt taaaagaacc tacctgatag aacgggagtg aaatccttgt aatgtgctga
     9421 ataaaaaagc tctcttatgt cattgagtag ctcaaattca tctttggatc ttgcgttgca
     9481 gattgccaca tagtcatcta cgcaggataa aatacgttca atactgactt cttttatcca
     9541 gcatacttct tggttttcat tcagccagtt ggcaaagtct tgtttagtgc agtctttttt
     9601 cataagttct cctttttgat tatttgcaaa aaaaatcata tcaaatcatc cgttgttatc
     9661 tattggcgaa aataattttt gcgacacaga tcgcaaaaat aggttttgac ggtggaaaaa
     9721 cgaatcttaa ttcgtagaat ggtaaaattt ctttattttt aaggtatttt tatgaaaaaa
     9781 atgattgttt ttgtagcttc tgttttgtca tcttttgtta ttgcatcgga ttgggaaata
     9841 atagaagcgg ctcaaaataa ggtgaaagca gagcttataa gaaaatcaga aaaaaaagca
     9901 gagttatgtt taaatgttgc tcaggctgtc ttaattacta atcaaaaagt gcaaaaagat
     9961 actttctcaa tgtgtggtga attttcgaca gagattgtct tttctgactc taaagcatat
    10021 agccttgcag tatgtggaaa ggttaaaggt aaagatatta tcggaaatcc gatagagagc
    10081 gactatatat accaaagagc aactaaggat ttttacttta attataatgg caaaaaatca
    10141 gcttattatg atcctcaatc tgatcttgca aggcttcaag aggtctcaga ctctatgttt
    10201 aatgctatgc aaaatagata ttgtaagtga tgcttgcatt ggtttttaaa tatttaactc
    10261 aaataattta tgtgttttt
//
LOCUS       DANMGB010000085        10155 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.085, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000085 DANMGB010000000
VERSION     DANMGB010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10155
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.085"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            97..1038
                     /gene="argC"
                     /locus_tag="PXG19_001577"
     CDS             97..1038
                     /gene="argC"
                     /locus_tag="PXG19_001577"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL6066865.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            1130..1984
                     /gene="argB"
                     /locus_tag="PXG19_001578"
     CDS             1130..1984
                     /gene="argB"
                     /locus_tag="PXG19_001578"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL6066866.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            1997..3181
                     /locus_tag="PXG19_001579"
     CDS             1997..3181
                     /locus_tag="PXG19_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL6066867.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
     gene            3364..3795
                     /locus_tag="PXG19_001580"
     CDS             3364..3795
                     /locus_tag="PXG19_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6066868.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            3782..4249
                     /locus_tag="PXG19_001581"
     CDS             3782..4249
                     /locus_tag="PXG19_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6066869.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            4252..5019
                     /locus_tag="PXG19_001582"
     CDS             4252..5019
                     /locus_tag="PXG19_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6066870.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            5016..5822
                     /locus_tag="PXG19_001583"
     CDS             5016..5822
                     /locus_tag="PXG19_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL6066871.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            5822..6859
                     /locus_tag="PXG19_001584"
     CDS             5822..6859
                     /locus_tag="PXG19_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL6066872.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            6949..8169
                     /gene="agp"
                     /locus_tag="PXG19_001585"
                     /pseudo
     CDS             6949..8169
                     /gene="agp"
                     /locus_tag="PXG19_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628146.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
     gene            8477..>10155
                     /locus_tag="PXG19_001586"
     CDS             8477..>10155
                     /locus_tag="PXG19_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL6066873.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLEQEYLNYEQIILENKQ"
BASE COUNT         3090 a         1890 c         2249 g         2926 t
ORIGIN      
        1 aatcaattaa tgtgaataat tattcaaaaa taaacttgag tttagcctta aatagcctta
       61 gactaccgag cagaaaaagt caaagaagga ttttcaatga gcaaatacaa gatttttgtt
      121 gatggggcag taggaacaac cgggctacgc attcacgaac gtttaagcca agcggacgat
      181 attgaattat taaccttgcc cgaagagcag cggaaagatt tgaacgcccg tgtggcaaaa
      241 gtcgcagagg cggatttaac tttcctctgt ttgccggatg aagcctcaaa agaattagta
      301 gcaaatgcac cggaaaatac ccgaatttgc gatacttcaa ccgctcatcg ggtcaatcct
      361 aattgggttt atggttttcc ggaattgagc ggacaacgtg aaaaaatcca aaatgccaag
      421 cgtgttgcgg tgccgggttg ccatgccacg ggctatattg cgttggttcg tccactggtg
      481 gaaaaaggga ttctgcccgc cgattaccct ttaagttgtc attccttaac cggctattca
      541 ggcggtggca aagcgatgat tgctgactat gaaaatgaaa acagcccaaa tgctttcaat
      601 gcccctcgtg tttacggttt aactctccaa cacaaacatt tgcctgaaat gcaggcagtt
      661 acccaaatgc aaaacccacc gattttcacc cctgtggttg ctgattatta cagcggaatg
      721 ttagtcactg tgccattgca gatcttcgcc ttacaagcgg tcaaatccgg cgaagaaatt
      781 gcaaatttgc tcgccgatta ctaccaaacc agccgactaa ttcacgttca ccctttccaa
      841 tctctacccg aagacggaat gcttgccgcg aatgcttatg caggtaaaga cagcttagag
      901 atttttattt acggcaacag cacccaactt ttacttgctg cccgttttga caatttaggc
      961 aaaggggcat caggtgccgc agtgcagtgt atgaatatta tgttgggaag agatgaggtt
     1021 gaggggttag agctttaaat ataaatgtag ggacaggtcc tgtgcctgtc cgataatcat
     1081 cgcccatatt cggacgggca caggacccgt ccctacaaga gaaagaaata tgcaacaaca
     1141 agaaatcaat caatttgcaa atttattaga aaaatccacc gcttgtttgg tgaaatggca
     1201 gggtaaaatc attgtggtga aatatggcgg taacgcaatg attaatgagg aactgaaaaa
     1261 atcagtgatg gcagatctgc tgttacttca tcgtttaggc gtaaaagtgg tactggtaca
     1321 cggtggcggg ctggagattt cacaaggcgt gaaattattg ggtaaagaac cgcaatttat
     1381 caacgggttg cgtgttaccg atagcgatac gattaacgtg gttttgcaaa tgttggcagg
     1441 caaagttaat aaaagccttg tcgccttatt aaaagggaaa ggcattgggc tgtgtggtat
     1501 tgatggggcg atgttgcaat gcaaaaaatt agaggcagag gtggattacg gctttgtggg
     1561 cgatattgtg aaagtcgatc caactgtgat tgaaattgct cttaatgcgg gcttgattcc
     1621 ggttgtttcc acggtgggcg ttgatgaaaa cgggcaggct tataacatta atgcagacac
     1681 cgctgccagc gagattgcga ttgcgttaca agcggaaaaa ttggtctcga tgaccgatat
     1741 tgcaggttta ttgcgagatc gctttgatga aagcacctta attccggaag tggaagtaag
     1801 cgaagtgcag tccctgattg agcaaggcat tattgccggt gggatgatcc ccaaaattgc
     1861 gtgctgtacc gatttcatca gagctggtgg ctctgaggca aatattattg acgggcgaat
     1921 cgaccacgcc attttggtag aaatgttcgg tggcaaaaac ggcacacggt tttataaaaa
     1981 ataacaggaa agtgaaatga caagcagtaa tacgattaag caattagata aggattatat
     2041 cgcccaaacc tatggcagat ttgaccttgc actgtcgcac ggaaaaggct gtgaagtgtg
     2101 ggattttgag ggcaataagt atcttgattt taccagtggc attggggtaa atagtttagg
     2161 ctgggcggat gaggattggc tacaagctgt taccacacaa gccggcaaat tagctcacac
     2221 ctcaaacctg ttttttaccg aaccggcaag ccaattagcc caaaaattag tggctgcaag
     2281 cggtctaaaa cgggcatttt tttgcaattc aggggcagag gcaaatgaag gagcaattaa
     2341 aaccgcccgc aaatatagtt tcgacaaata cggttccggt cgttcaacgg ttttaaccct
     2401 cgtgaactct tttcacggac gaaccatttc aaccctcgca tccactgggc aagaggtatt
     2461 ccacaagcat tttttcccct ttacagaggg ctttgaatat ttacctgtaa atggcattga
     2521 ggcactgaaa gctcgcttgg aaactgagaa cgtttgcggg attttgctgg aggtggtgca
     2581 gggcgagggc ggtgtttgcc cattagaggc ggattatctg cacgccgtgc aaagcctgtg
     2641 ccaagaaaaa gatattttat ttatgattga tgaggtgcaa accggcattg ggcgaacggg
     2701 cacacttttt gcttatcaac aatttgattt aactcctggt ttagtcacgc tcgctaaagg
     2761 cttgggcggc ggcttgccga ttggtgcttt cctgttaggc gaaaaagtgg aaatgacatt
     2821 aggcaaaagc gaccacggct caacctttgg tggcaatcct gtttcctgtg ctgctgcaaa
     2881 tgtagtaatc gataaaataa acgccgaatt tctcgcccaa gtgcaacaaa aagggcagtt
     2941 gttacagcaa cgcttagcga gcttaccaaa agttaaatcc gtttcaggct taggtttaat
     3001 gctcggcgta gaatttgagg aaggcatttt agccgctgat attgttgcaa aatgtatcaa
     3061 caaaggtgtg ctgtttttaa ccgctaaaag caagttaagg ctactcccac cgctgatgat
     3121 ctctgaacaa cagatagaac aaggaatcag agtgttagag gatgtcttga aagattcttg
     3181 agttattata aacagtagga atatcttctt actgtttttt attactatta tatagtagcc
     3241 tactttaatc tgttgtcact ttatatttct tcttatgtgt acgatatatc gtgcaataac
     3301 ttcccttgtt tatctgtata acattttatt taatagaatg acttataaat caaggagtga
     3361 cttatgtcta atcaaattgc gttattgttg atgagccacg gcagttttgc gagggcggcg
     3421 ttggcgagtg ccgagctgat tgtcgggcag caggaaaatg tggcagctat cggcgtagta
     3481 gcagtggata atgtagcgga cattaaacgg cagatggagc aaaccattgc tgagttaaac
     3541 accgacaaag gcttgattat tctcaccgat attgttggtg gtacgccgat gaatcttgcc
     3601 tcttctcaat taacccaccc taatgttttt gcctgttcgg gtttgaattt acctttattg
     3661 ctagaagtgc tgatgagccg tgacggcaat ttgcaagaaa ttcgggaaaa tctaccgctt
     3721 gcataccaaa acggatttag cctacgcaca caacaagatt ttgtttcaca ggaggacgat
     3781 gatgatctgc tttagccgta ttgatgaccg tttaattcac ggtcaagtag tcaccacttg
     3841 ggttaattta caccgtattg aacaaattat tgtgttaaat gatgcggtgg cagcggatcc
     3901 aacccaaaaa cagattttaa cgatggcagc accgcaggga attaaagtgg tcgcgtttgg
     3961 cattgaaaaa tttggtgaag tgttgcagaa gacacaaatt acccgccgta ctatgttgtt
     4021 gtttaccaat agcattgatg tgttacgcac tgtagaacta ggtgtatcga ttgacaaatt
     4081 gaatgtcggc ggaatgcgtt atcaagctag gcgtgagcag ttaagtaaag cggtttcagt
     4141 tacgccagaa gagcgtcaag catttaaaac cttattggaa aagggtgttg aagtaacggt
     4201 acagatggta ccgaatgatg aaaaacttaa cttacaggag attatctagc tatgctgact
     4261 gcactacttg ttgcctgctg ggcaggtatt tgtgccttag atgatattgg cacacagatg
     4321 atccgccgtc cgttgttaat cgcaccggtg gtcggattga ttatggggga tttggaaacg
     4381 gcgttgatta ttggtgctac gcttgaagtg atgtggatgg ggatcggcaa tgttggtgca
     4441 tattctgcac cggatatgat ttccggaacc gctattggca ccgcacttgg tattgctgct
     4501 ggtgaagctt ctactgcggt tgcactcgca gtaccgacct cactcttggc acagcagtta
     4561 ctcattcttt accgctccgg cgtatgtgca ttgaacccaa ttgctgaacg ctgggcggca
     4621 agcggtgatt ttgacaagat tttccgcatt cactatatcc caatgttaat tgccttttct
     4681 attcgtgcta ttccaacgtt cttagccgtc tattacgggg cggacattat tgcccaagcg
     4741 gtctctgctc tgccggcaaa agtgattacc ggattaaatg ttgcaggcaa aattattcct
     4801 gccatcggta tcggtttgct gatgttaatg atgattaaga aagccgaact ttggacgttc
     4861 ttaattgctg gctttacgtt ggcggtttat ctcaaattat cagtattgcc gattacctta
     4921 attgcactac cgcttgcgtt gatttacgac ttagcagtaa gcaaaaaagc tgaagctgca
     4981 ccaaccaaaa ccgcagatga agaggattat gacctatgag caataaaatt accaaacaag
     5041 atttaaacaa agtgttttgg cggatgcagg tgctgaacgt cacaaacaac ttccaatcga
     5101 tgcaggcgat tggattttta agtagcttta ttccggtatt aaaacgactt tataaagatc
     5161 gtccacagga agaacgagcg gaagcaatga aacgccactt aaaatttttt aacagccacg
     5221 ttaattctga tgcattgatt ttaggaattg ccgctgcggt agaagagact accaaagagg
     5281 atgaaaaaga gacagtaacc gcgattaaaa ccggtttaat ggggccgtta gcagggctgg
     5341 gagacagctt gttgaaattc acctggttac cgatttgcgg tagtatcggg gcggcattgg
     5401 cactaagtgg caatgtgtta ggcccgattt taatgttctt gttgtataac agtgtaaaca
     5461 ttgcgacgaa gtattacggt atccatctag gttacagcaa aggggttgat ttaattcacg
     5521 gtgcgggtaa taacattttg caacgactcg gcaatatggc aaatgtggtt ggtttaatgg
     5581 tgattggcgc attaattgcc tccgttgtga aagtcaaagt agtttcacaa attgccgctg
     5641 gtgataatgt gattaaattc caagagatgt tagataaagt gatgccggga ctactcagct
     5701 tacttttaac tgtcgtgatc tactggattt tgaagaaaac taacggcaaa tatgctgcaa
     5761 cgatgatcct tgctacgatg gggatctgta tcggcttagt ctatgcagga atactcggct
     5821 aatggacagt gtgtatgaca ttattcggtt ggaacagggc agatacctgt tccgccaaca
     5881 gccggctcaa tcggtacaga ttttctttct ggacaaccct gacagtaagg atagcaaatg
     5941 gctggcggag actgatttgg cagagtttga gctgaaattg agcgcttgtg aagcccgtcc
     6001 gttcttcctc attcaatcag caaacggaga acagattgtt gctgaacgca ccttacctgt
     6061 tgccggaatg aataattttc gggatatggg gggctatgtc gctcatcagg gcaagcgagt
     6121 gaaatggggc aagttatacc gctccgatca tctgcataat ttaagagacg aaggcgtggc
     6181 ttatcttgat aaattgggaa ttcagactgt tattgactat cgcagcccga atgaagtcgc
     6241 caaataccca aatcccccaa ttaatggcag agagcaaact tttcggcttg atccgaatgc
     6301 acatactgcc gagcttgctg cccaatttag tgcagacaag cacgatgaag atcgtaattt
     6361 ggtcaataaa atcattgctc aaaaagctga aggtaatctt atcaatcgct acgacattgt
     6421 aatggcacaa tatcgtaatt ttgtcgaaaa agcagaatgc caaaccgcct ttgctgaaat
     6481 gttaaggttg gcgacagacc ctgaaaatgc accattggtt caacactgcc gtggagggaa
     6541 agatcgcact ggtttcggtg caatgttact gcttggtatt ttaggcgtga gtaaagctga
     6601 tattattgct gattatatgc ttactcatta taaccgcctt gctcgtaacg aagagaaaat
     6661 ggcgatttac cgtaccttca ctcaagatca agatgtgttg gactacctat tgtctttaat
     6721 cgatactcaa cccgaattta tcgaacaatc gcttaatact attgaaaccc aatatggtac
     6781 tattgagcaa tatgcccaaa gggtattagg tattactgcg aaggaaattg aagcattacg
     6841 ggcaaattat ttggcgtaga acggtagggt gtaatattga acacactaca aatggagaaa
     6901 tttcatatgc gttattttgc aaaacattgg tataaaacta ccgcttgtct gacaacaatt
     6961 ttcacagcat ttcctctttt tgctcaacca attgaaaata taccaacttc ccactacgaa
     7021 ttagaaaaaa tcattatatt tagccgacac gggttacgtt cccctcttac agaaaaaggc
     7081 agtgatttag aaaaatcaac cccttataaa tgggcaaatt ggagtgtacc gaccggtcat
     7141 ttaacccata aagggacgct gttggaaacc tattttgggc agtatcttgg tcaatggctc
     7201 acacataatg ggttattgga caaggcaagc tgtgaaagtg ggaagcagat tgaggtttat
     7261 gctaatagcc tgcaacgtac aattggcact gcacaagctt tggttgccgg tgggttttca
     7321 ggttgtaatg tacaagttaa acaccaccag cagattggaa agatggatcc ggtgtttaat
     7381 ccaattattc gctccgatga ccagacattt gtgcaaacag cattaagcaa aattgacctc
     7441 aataaaaccc atcagtattt agcgccatcc tatcatttat taagcgaaat aatcgattat
     7501 gctcattcag aaaaatgttt gcaggaaaaa cagtgtgaat tttttaatga tgttggtaaa
     7561 ttaaggatta aaaaggataa ataaccaggt gtttccggta cgatgcgatt aagtaaaaat
     7621 attgtcgatg ccttattgct gcaatattat gaaggttttc ctttaaaaga gattgcaaat
     7681 aaccagcttg atagtgatca gaaatggcaa acactcaata aaattaaaaa cgattaccaa
     7741 tttatgctac gaggagatcc atttattgct aaacatattt cattaccgct attaaaatat
     7801 attcagcaag atttaaatag tgaaaataaa ataacacttt tagtcggaca cgattccaat
     7861 attatagcct tactttctgc attaaatgtt aagccttata aattagcaca tcaatatgaa
     7921 caaactccaa taggagggaa agtctttatt gaaatctgga aagaaaaaag tagccaagca
     7981 caaaaagtta aactggaata tgtatatcaa tctactgacc aaattcgtaa agcgattcca
     8041 ctaagccttg ataaaccacc gcaacatcac attttgagtt tggattattg ccaagctgac
     8101 caatatggat tatgcgatta tatggaattt aaacagttac tggaaaaagt cattgctgat
     8161 acattgtgag attttgacaa agtgagtgaa aaaggtagca taaaaaagtc gggacagttg
     8221 ccagctgctc cctgtaagat gttgtttaca gcactagtaa tgctactatc cccaaaaagc
     8281 tgctgaaagg cagctttttt gttgtatata aaagtacacc tttctacgct tcattctttt
     8341 tctccaatta aacctaattt aggacttcta gtgataaatt cggtatcata tcttaattca
     8401 ctacatatcg tgcaagcctt aaaattgaaa gggctgacga aatcctattt aattctgaca
     8461 cacataaggg aatattatgt cgcaagatat tcaagccgat ttaaaaaaga tattggcact
     8521 attaagccgt aaccgtcgat ttcaatcatt atttttatta ctgttaagaa gtgaacaatt
     8581 tattaatagt gatgcacttt ctacggagtt acagctttca gtacgaacgg taaaaaaaga
     8641 gattaagtta ttaaaagaaa aacttgaacc ttacggcatt cagatttttt ctcgaccgtt
     8701 ttatggctat aaattattga ttcagtttga agaattacac acgcaactaa aacagtattt
     8761 ccaaatatca cagccgatga cggtaaataa taaatttgag tctcgggtaa atgcgatttt
     8821 acgccgatta ctggtgagcc agcgtgcatt gaaagttgaa gattttcaga gtgagcttta
     8881 tttaagtttt accagtgcct taacaaaaga atttagtcaa gttaaagcct tgttaggaaa
     8941 atatggattg atactcgaag cgaaacccta tcacggaatg aacattgtag gtgaaagtta
     9001 tcgtaaaata atgctcacag tacgattata taaatatttt acccagcttg aacatccatt
     9061 tggaattaaa gaatttgaac agtgttttgc ttgtcctatg actgaaaaaa tccgtgaaag
     9121 gttagctaag acaattattc atttcaattt agtattttct gatatttatg ctgagcggtt
     9181 tattatttac ttacgctatt tttataatca acagcctgag ttattgttac cgaagttaaa
     9241 ttttaattat caacagacga atgaatatca gtttgtaatt aagttactgg aacagcttcg
     9301 tgaacaagac agtcgttttg agtttaatcc ggaagttatt cgatttctga cctatattgc
     9361 gatagccagt acagatctct accgctttaa agattgtaat tcggataatt acccattgtt
     9421 gctagataag gcttgggaaa ttcatcgttt tatttttact cagttttctg catatttaaa
     9481 tttatcggaa attcacgatg acacttgccg taaagatttg cttaaaatgc tgatccctat
     9541 cgcaatgaaa atgatgctta gcatttcaga tgatgtggat ttagggctat ttaaccaaac
     9601 agaactacat agaaatccaa ttttggctca tacagtagaa aaattagtgg atgacattga
     9661 aaaaaactac gggtatagcc tatctattcg agaacagtat tttatttttg atattttttc
     9721 cggaatggtt aatcgaattg aattagaacg taaaccgctc cgactggcga ttattgccct
     9781 taatggcaga ttaagcaccc aacagttaaa acggaatatt aagcggtact tttccgacta
     9841 tattttgaaa attgaaacca aagtgctata tgagcttgcc ataatggaag ataaacctta
     9901 tgactactat ctctgtaatg aatatggaaa aaatatggct attccctata agcctattta
     9961 ttttgctgac agtagtttaa atgaaaatga atatgcaaca tcactcaacg aagtatttta
    10021 tcacgcttat caatatgatg aggtgttgcc tagcattaaa tcgattgaaa ttgaagcaca
    10081 atatcgccta aatgagtttc atcttgagca agaatatctt aattacgaac agattatttt
    10141 agaaaataaa caaga
//
LOCUS       DANMGB010000086        10040 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.086, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000086 DANMGB010000000
VERSION     DANMGB010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.086"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            163..384
                     /locus_tag="PXG19_001587"
     CDS             163..384
                     /locus_tag="PXG19_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6066874.1"
                     /translation="MNIYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFP
                     VVRRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            406..1446
                     /locus_tag="PXG19_001588"
     CDS             406..1446
                     /locus_tag="PXG19_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6066875.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(1605..1892)
                     /gene="rplY"
                     /locus_tag="PXG19_001589"
     CDS             complement(1605..1892)
                     /gene="rplY"
                     /locus_tag="PXG19_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL6066876.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(2044..3312)
                     /locus_tag="PXG19_001590"
     CDS             complement(2044..3312)
                     /locus_tag="PXG19_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL6066877.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(3469..4380)
                     /locus_tag="PXG19_001591"
     CDS             complement(3469..4380)
                     /locus_tag="PXG19_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL6066878.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(4377..5096)
                     /gene="nfsA"
                     /locus_tag="PXG19_001592"
     CDS             complement(4377..5096)
                     /gene="nfsA"
                     /locus_tag="PXG19_001592"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL6066879.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(5108..5893)
                     /gene="mtgA"
                     /locus_tag="PXG19_001593"
     CDS             complement(5108..5893)
                     /gene="mtgA"
                     /locus_tag="PXG19_001593"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL6066880.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(5868..6188)
                     /gene="trpR"
                     /locus_tag="PXG19_001594"
     CDS             complement(5868..6188)
                     /gene="trpR"
                     /locus_tag="PXG19_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL6066881.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(6268..6909)
                     /gene="lolA"
                     /locus_tag="PXG19_001595"
     CDS             complement(6268..6909)
                     /gene="lolA"
                     /locus_tag="PXG19_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL6066882.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(7020..9878)
                     /gene="polA"
                     /locus_tag="PXG19_001596"
     CDS             complement(7020..9878)
                     /gene="polA"
                     /locus_tag="PXG19_001596"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL6066883.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         2968 a         2228 c         1854 g         2990 t
ORIGIN      
        1 atcaaataag atgccccaaa acctatgcta agttgagaga aatcctagaa gccaacgaag
       61 aaaatgttgt ccgcatcggt aatgtgagca tttcgatagg ttcaacgact taacgattat
      121 ttaaccaaat ccctctaaat gaggggttta tttggagaga atatgaacat ctacactgac
      181 ttcctttctc gtgaagagat tgaatttatt actcaatgca agcagaaaaa tctaatcaaa
      241 aaacaactca acattatggg cattccattt aaagaaaatg caaatggatt ccctgttgtc
      301 cgccgtgatt atgctcaggc taaacagcgt aaacctattg caacgaatga ttctgactgg
      361 gtatcaaatg catttaaagc gtaaattgag aagaaggagg cacttatggc acgccctcga
      421 aaatatgaaa acaacggatt gccacaaaac ctactctgcc gccgcagaaa acgagcaaac
      481 ggaagtatag ttgaatacta cttttacgtt cttgccgacg gcaaagaaag gtctctcggt
      541 acaaacaaac acgaagcaat tttagaagca gccaagctaa attttgaaaa tagtagaaaa
      601 tccccaattg ttttatttat tgatgtggca aaacgctatg aattggaagt tgttccaacc
      661 aaaaaagcca aaaacactcg tcaatctaat ttacaggcta ttcattggct atgtaaattc
      721 tttggtaacc cacctgcacc gctcgaaaaa attgagccaa agcacatcag tcaatattta
      781 caatggagaa aagacacgcc ggctgttgct aatattgagg taggtttatt taacacaatt
      841 tggaatatgg caagagaatg gggatacact gctcttccaa gcccatcaca aggtgtaaaa
      901 aaattcccga ccaaatatcg tgaagtttat gtagaggatt atatccttga taaaatctat
      961 gaatttgcag atgaaagaat ggcggatatt atcgaaacag cctatttgct gggacaaaga
     1021 ccgattgata tttgtaatat acaccgctca cacatctatg acggtatatt gcatattact
     1081 caacagaaga cagggaaaaa agtgagattt gaaattagtg gtcggctaaa agaaatttta
     1141 gataaaaggt tgggatacga atcagactgg atttttacca ataaatgggg gaaaaaatta
     1201 aaacggcgaa gtttaggcga tcattttaaa gaaataaggg agagagcaat gaaagcatat
     1261 cctgaacttg ctgatgaaat cgctaaagta caaatgcgtg atatgcgtgc caaagcagcc
     1321 accgatattt ccctaatgac aaccgatgaa caagctcaaa aacaacttgg gcatacatca
     1381 aaaagaatga cacatcatta catcagaaaa gacaaaatcc tcaaacctac cgatgaaatc
     1441 acctaaaaat aaagcccttt tgccaaatac aaaagagcca tttactcacc taaaatccgt
     1501 tccgaaacta ttttgtaaat aattgatttt attgacctaa aaaactataa aatcgcaaaa
     1561 agtttcggaa cagaaaacag cgttaaaccc ttgtaaatca aggattaagc acgtttgaag
     1621 tctaagtgaa ctaattttgg tttagttggg tggcgttgaa ttgcttgtac ttttacttgc
     1681 tcttctttac ctgcaacaac gatagttaat acttcgttat agaatgaatc gtgaacttgt
     1741 gcgttgttca ctttatcgtg atctaaaatg attgatacag gctctgcatt accaccgtag
     1801 atgattgcag gaacttgacc attgtgacgc aggcggcggc tcgcaccctt accttgcgca
     1861 gaacgaactt cagcttcaaa tttgaatgac atagttttat tctcttaaat aaaatgggga
     1921 aatccccgtg aatagaaaaa acagcaggcg acccagctgt ttccgaaaaa atatcggcat
     1981 atccgtctcg atatgccaac tacgtatttt actgaagttg cagaaaaatg caatgtaaaa
     2041 atattaagca accagttttt tcaactgctc tgcataagct tcccaatctg taattggtcg
     2101 agttgctaca cctgattgaa ttgctgcttt tgctacacca atcgagacat tcacgatcaa
     2161 acgtggatca aatggcgttg gaataatata ttccgggcca aacgataatt cgccataagt
     2221 tgaaataact tcaaacggca caggttcttt agccaactct gcaatcgcat gggctgctgc
     2281 cattttcatt tcttcattaa tggtttttgc cccaacatct aatgctccac ggaataagaa
     2341 cgggaaacaa agcacattat tcacttggtt tttaaagtct gaacgaccgg tacatacaat
     2401 cgcatctgga cggacagcct tcgcttcagc aggtgtaatt tccggcacag ggttcgctaa
     2461 agcaagaatt aatagatctt ttgccattgt tttaaccatt tcttgcgtta aagctccgcc
     2521 ttttgaacaa cctaagaaaa catctgcatt cgcaacggca tctgccaatg ttctccaacc
     2581 attatcttct attgcataga attgtttggt ttcatccatc ttatcaccac gaccttggaa
     2641 aataacgccc ttagaatcgc acattgtgat attttctttt ttcacaccta atgaacggag
     2701 taagttagta cacgcaatcg ctgatgctcc agcaccgttt accactaaac gtacttctga
     2761 aattgcttta cctaccactt gtaatccgtt aatcaccgcc gcaccggtaa taattgccgt
     2821 accgtgttga tcatcgtgga acacagggat tcccatacgt tcacgtaatt tttgctctac
     2881 ataaaaacat tcaggtgctt taatatcttc cagattaata ccaccaaaag tcggttctaa
     2941 cgatgcaata atctccacta atttctccgg atcagtttca ttaatttcaa tatcaaacac
     3001 atcaattccg gcaaatttct taaatagaac acctttgcct tccatcacag gcttacttgc
     3061 taaagcacca atattgccta agcctaacac tgctgtacca ttagaaatta ctgcaactaa
     3121 gttacctcgt gccgtataac gataagaagc tgaaggatct ttttcaatcg ctaagcaagg
     3181 ctcagcaacc ccaggagagt acgctaaagc taaatcgtgc tgagtatcta atgctttagt
     3241 aggagtaacg gaaatttttc cggggattgg gaactcgtga aaatcaagcg cctgttgttt
     3301 taaatcgctc attttagaaa ccttataatc tataaaaata aaagtaatca ataatagcca
     3361 aagagtagcc attttaccct aaattttttc gcatttttat ggctttgctc tcatttttta
     3421 tgatatttac aaaaaataat acaaaaacgt ccgcttgttt tactcaaatc aagcattctt
     3481 catcttattg ataaaataag aaaccatttc agaagctata tcaacatcat ttactctctc
     3541 tatgccttca aatcctgggc tggcattgac ttctaaaata actacgcctt tctctgtccg
     3601 cagaaaatca acgcctgcaa tatcaagccc tatcgtttta gttgctttaa ttgctaacgc
     3661 acgttccatc tgagttaatt caatcggttg agccgttcca ccttgatgaa tattggctct
     3721 aaaatcgcct gttacgctgg ttcggctcat ggcagcaacc acttcattgc caatcacaaa
     3781 cgcccgaata tcttgccctt tagcgtcgcc cacaaattgt tggcatagat aaggctcatt
     3841 tacttgccta aaggtcgcta acacggcctc ggcattattt ttgccttcaa atagcattac
     3901 gccattcccc tgtgaaccat ttagcacttt tgaaataagt ggaaaagcaa attgattgag
     3961 ttgtgatttc acagaaacca aatgccctgc aaaattcgta ttaggaaccg gcaaattgtg
     4021 tttggctaat ttttgtaatg ttcgccattt gtctcgggct aacgcaaatg ccgctgaatg
     4081 atttagaaca ggaatacctt tcgcctcaaa atggcgtaac accgaacagc ccatttcggt
     4141 actgcctgtg ccaaaacggg gtaaaatgcc gtcataattc ggcaacaata ccggctccgg
     4201 acggttgtta tcatagctct cgccagcttg atagtagatc ttaaattcgc cattttctaa
     4261 cccgagtagc attctattct ggtctaaaat atccagctca atcccctttg cctcacaagc
     4321 ggcttttatt cgacagcagc tatataaacg aggctctcga catagcatta gccacttcat
     4381 tttttcagca atcctttctg attgaaaaac ggcaaaatat gcggacgaac aggcttatcc
     4441 aatgttttat gaatagctgc ttgccattgt tgtggctcgc cgattctggc ttggtagtaa
     4501 gcggtcaaat tttcattata ttttgcaaat tcagtccaat caaaatcctg atattgattg
     4561 ttataacaaa ccaaactatt cggcaaacga ggttttattg ccggctcttg tgccggatac
     4621 cccaaacaca tacccaccag tggaacacaa tattccggca agttaagggc tttagaaacc
     4681 cgctcaatat cattacgcaa tgctccaata tacaccgctc ccagccctag tgattcggcg
     4741 gctaaaaata cattctgggc caaaataccg gtatctaccg ccccaatcaa cgacacctcc
     4801 gcccattcca actgcgattc agggacaagt tgtttgtgtt tattaaaatc aatgcagaac
     4861 accaaaaatt cagcacaatc tactacatat tgcatacctg aaacggcttt taatgtttct
     4921 cgaatctgcc gatcggttac acgaatcacc gtcacacatt gcagatgatt tgaacttgaa
     4981 gccgctttac ctgcctcaat taagatttgg aaaatctctt cagaaatagg ctgttcggta
     5041 aatttacgaa tagaacggtg agataaaatc gtctcaagag tcggtttact ttgcatattt
     5101 ttctcgtcta aagtttatct aaataatttt tgccatcaag caaacttact tgtcgcataa
     5161 tccacgcttg gcgttttcgc atactcgggc cgggtttatc taccctaaac accaacgggt
     5221 taggcaaaga ggctgccaat agtgcggatt cttgcaaggt tagctgtttg gctgattttt
     5281 tgaaaaaatg ctttgcggct gcttccaccc cgaaaatgcc gttaccaaat tccgcaatat
     5341 tgaggtacac ctctaaaatc cgatccttac tccacacatt ttcgactaac agggttaaag
     5401 gcacttcaat ccctttgcgt aaccagcttt gcccgtgcca caaaaacata ttttttaccg
     5461 tttgttgcga aatggttgaa cctccacgca cttttttgga tttagcattc agtttcaagg
     5521 cagtttctat cgcttgtaag tcaatgccaa aatggctttc aaacttttga tcttctgagg
     5581 caatcacagc catttgcatt tgccacgaaa tctcattcag gctcacccat tcttttttga
     5641 tcgggtaaga tttcccctga accagattct ccaccttttt ttgcaccata tacgcagaat
     5701 aaggcaccgg taacaccgaa aaaatcagta tcggaatcag gaaaaatgtg ccaccaaagg
     5761 ttaataagcg actagaacca aaccaaagcc agcccagttt actttttatt ttgcgaggaa
     5821 taaaaaaaag ccctattttc ttcaaaagag agcttaaaaa tcgcttgtta cgctttgcca
     5881 ttgactgttc cattaacctt gccgttcagc cattgcagaa aatcttggtc gagtgtttta
     5941 agcatatttg aaccacgagt gatggttgcc gcactggtat ttaaattttg ttggatttcc
     6001 cgttgcgaat cttcaccttt tagcaaagct tgcacaattt gtaaacgcaa gcctaatgaa
     6061 cctcgctcat cggcggtgag aaacattgag aaaaacggct caagtttatc ttccgcaacc
     6121 gcttgttcaa gcagagccaa aaactgcgtc cactcgtttg gatctcgctg gttatagagt
     6181 gttttcatac tgtcccttga agtaaaaacg gtgacaagcg gtcagatttt tacaaaattt
     6241 tgcagaaaaa cgaccgcttg ctctccatta ttttttcgat tttttaccgc cacgttggtc
     6301 gtctaactct gcccctttcg gtacgctgaa tttaaacaaa tcgcttgaga caccgccggt
     6361 agtaatattg cgtaacacat ataagttact ttgcccgtca cgctcaatgg tactgaaacc
     6421 ttttaataaa ccgctttggt caatccgcac atcaaactgt tttaaattgc tttttttcga
     6481 ttttggctta agcacgaaag tatcagcact ctggctgaca tcatattgat cccagtggct
     6541 tttatcaccg ctggttaata agacgaatgg cgtattatta actgcatctt gcacggtatt
     6601 taccgtaact tgtgaaacga aaggatcgta aaaccataaa tctttgccgt cagatacaat
     6661 caaattttct tgtggtgatt tggtatccat tctaaataag ttcgggcgtt ttacttggaa
     6721 tttgcctttg ccttgctgaa tttgtttacc tttgctagaa cgcacggttt ggtcgaaatc
     6781 cgcactatat tggcttactt gttccaaacg gcgttgtaat tctgcaacag attgagcatc
     6841 agccaatgcc acatttgcca agccaaataa cgctaaaccg aataccgatt ttttaaataa
     6901 tgttttcatt tgttttcctt tttaccaaca agaattttct tgtttgacaa taaaatcatc
     6961 aaaagtttca tattaatgaa ctgttacaac aatacaataa aagtcgtgaa ttgtatagtt
     7021 taatgagctt cgtcccagtt ttcgcctacg ccaacttcgg caatcagtgg cactttgagg
     7081 ctaatcgctt tttccatttc ggttttgatt aattggctgt aatggtcgat tttatcggct
     7141 ttgacttcaa acaccaattc atcgtgaacc tgcataatca ttttgatttc atcattatca
     7201 cgaatcgcat tatcaatacc aatcatcgcc accttaataa tatcggcagc cgtgccttgc
     7261 attggggcgt tgattgccac ccgttctgct gctttacgca aaatagcatt gccggattta
     7321 atatcaggca agtacaaacg gcgaccaaat agggtttcaa catagccttt ttcaactgca
     7381 acttcacgaa tatcggtcat aaattgttga accgccgggt aacgttggaa gtagagatcc
     7441 atatattttt gagcctctgc acgcccaatc cctaattggt ttgaaagccc aaatgacgac
     7501 attccgtaaa tcagcccgaa gttaattgct ttcgcactgc ggcgttgttc ggaggtgact
     7561 tcacctaact ccaccccgaa aatttcggca gcggtagcac ggtgaatatc tttgccctcc
     7621 gcaaaggcgt taatcattcc ctcatcattc gataaatgag ccataatccg tagctcaatt
     7681 tgtgaatagt cggcagcgac aattttataa ccttctctcg cgacaaaagc ttggcgaatc
     7741 cgtctgccct cttcattgcg gatcggaatg ttctgcaaat tcggatcgct ggaagaaagg
     7801 cgtccggttg cggtgactgc ttgattgtaa gaggtatgca cccgccctgt ttttttgtta
     7861 atcagttgtg gtaatttatc ggtgtaggta gatttcaact tacttaaccc acgatgctcc
     7921 attaataact tcggcactaa atgcccttgt tgagccaact cgtctaacac ttcttcgttg
     7981 gttgagggtg caccttttgg agttttcttc aacaccggca agcctaattt ttcaaacaaa
     8041 atctcttgta attgtttagt tgaggcaaga ttgaaggttt gccctgcttc tgcgtgtact
     8101 aatgtttcaa cttcctccaa acgtttttca atttcagccg attgggtcaa taattttttc
     8161 gggtcaatca acacgccatt gcgttcaatt cgagaaagta cgcccacaag tggcatttca
     8221 atttcatcga ataacttcac caattcaggc tcttgctgta gtttttccca caatacttgg
     8281 tggagtttca tcgtcacatc ggcatcttct gccgcatatt cagccgcttt tgctatctcg
     8341 attttatcga aggtcagttg atttttcccc ttaccagcaa gctcttcaaa cggaatcgtt
     8401 ttatgcccca aataacgggc ggctaaatcg tccatattat gacgaccggt gctgttttgg
     8461 gtgtaagatt caatcatcgt atcaaaagca acaccttgta gctcaatgcc gtagttcgca
     8521 aaaatggtta aatcatattt aatattctgc ccgatctttt taatctccgg gttaagcaaa
     8581 atcggcttga gtttacttaa acaagcggtc aaatttagct gattttttac caattcatcg
     8641 gaagacgggc tttctgaacg ctcctcatca ccgaacatat cggcttgttg cggttgggct
     8701 ttttgcttat gcccaagcgg aatatagcac gcctcgccat tttccagtgc aaaggaaata
     8761 ccgaccaaat tagccgacat tgcgtcaagg ctgtcggttt cggtatccac cgcaatcaaa
     8821 cgagctgcgg tgagtttttc gatccaggct gataatttct gttcagtatc aacggtctca
     8881 tatttgctac gatcgatctc gaccacattt gcaacatttt cctcatttct gaccgcttgt
     8941 gttacttggt aattattcgg tactttttca gccgaagttt gagtgaccgg attggcattt
     9001 tgattcactt cgttcagcca gcgtttaaat tcataatgct caaataattg agcaagctca
     9061 gcacggtctt gcggctgtgt taaaagttga tcgtgagtaa catcaagttc cacatcggtt
     9121 ttgatggtag caagcaaata ggataaatcg gcattcgctt tttccgcttc caattttggg
     9181 gcgaaatttt ttgccccacg gaaagaaagg gtggcaattt gatccaaatt agcataaatc
     9241 tgttcaagtg aaccaatgcc ttgcaataaa gctaatgcgg tcttttcccc cacacctttt
     9301 acgcccggaa tgttatcggc ggaatcgccc attaatgcca gaaagtcgat aatcaactca
     9361 ggcggaatgc catatttttc aatcacgcct tcacgatcta acaaagtatt gttcatcgtg
     9421 ttaatcaaca taatgtgatc gttcaccaat tgtgccatat ctttatcgcc ggtgctgatc
     9481 aacacatctt tgccgtcttt agcggcttgc acagcaagcg tgccgatcac atcatcagct
     9541 tccacacctt caatcgaaat cagtggaatg cctaaggctt tgataatgcg atgcaaaggc
     9601 tcaatttgag ggcgtaaatc atcgggcatt ggtgggcggt gcgatttata ttgcttaaac
     9661 aactcatcac ggaaggtttt ccctttggca tcaaacacca cagcaatatg gcttggattc
     9721 acttgtgaaa tcaggctttt taacatattc agcacgccat acattgcccc tgtcggttcg
     9781 cctaagcgat tagtgagcgg agggaaagcg tgaaatgctc gatataaata ggaagaacca
     9841 tccaccaata ccagtggatt ttttgcgata gttgccataa aaatctcttt ataatcaaat
     9901 aaatattggc gttattatac aagaatattt aagaattgag tgtgtataag gcttatttta
     9961 aataaaacgt tccgaaaaaa cattgaattt cattaaaaaa ttcctttatt tatcaaataa
    10021 atgcgatttg tttcggaacg
//
LOCUS       DANMGB010000087         9976 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.087, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000087 DANMGB010000000
VERSION     DANMGB010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.087"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            282..1988
                     /locus_tag="PXG19_001597"
     CDS             282..1988
                     /locus_tag="PXG19_001597"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL6066884.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            2037..2876
                     /gene="menH"
                     /locus_tag="PXG19_001598"
     CDS             2037..2876
                     /gene="menH"
                     /locus_tag="PXG19_001598"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL6066885.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2925..3602)
                     /locus_tag="PXG19_001599"
                     /pseudo
     CDS             complement(2925..3602)
                     /locus_tag="PXG19_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3688..4350
                     /locus_tag="PXG19_001600"
     CDS             3688..4350
                     /locus_tag="PXG19_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL6066886.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4340..6268
                     /locus_tag="PXG19_001601"
     CDS             4340..6268
                     /locus_tag="PXG19_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL6066887.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6268..7155
                     /locus_tag="PXG19_001602"
     CDS             6268..7155
                     /locus_tag="PXG19_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL6066888.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            7113..8219
                     /locus_tag="PXG19_001603"
     CDS             7113..8219
                     /locus_tag="PXG19_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL6066889.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8216..9640
                     /locus_tag="PXG19_001604"
     CDS             8216..9640
                     /locus_tag="PXG19_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066890.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9755..9961
                     /locus_tag="PXG19_001605"
     CDS             9755..9961
                     /locus_tag="PXG19_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL6066891.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3101 a         2006 c         2133 g         2736 t
ORIGIN      
        1 catactattc tccaaaatac ttataagtct ataaaaaatt tacacttgtt ctaatataat
       61 gaataaaatt ataaactaaa acacaaattc gaaatacgtt tcttcgtaaa tgctcttaaa
      121 aaagagagag tttactaagt aaagtgttgc tcaatagata gaaattttca cgaagtttta
      181 caaaaacatt ccaattttct cctaaaaaac ttcccacaat aatttcactt tttgctacaa
      241 tcctaaccat ttatcgaatt tatcaatcag tagagaagaa tatgaatacc agttctttta
      301 atcgcacttg ggcaaaagtg attttaagtg cattaatgcg ttatggcgta aaacattttt
      361 gtattgctcc gggttctcgc tcaacaccgc tcacattagc ggcagtgcaa cttcaacaaa
      421 cgcaatatgc agagtgccac actcattttg atgagcgtgg tttaggtttt tatgcgttag
      481 ggattgctaa agcaaccgac agcccggttg ctattattgt cacttccggc acagcagtag
      541 cgaaccttta tcctgcggtg atagaggcaa gcctgagcca ccaaaaactg attattcttt
      601 ctgccgaccg cccaaccgaa ttaatcggct gtggggtaaa ccaagccatt catcagcaag
      661 gtatttttgc caattacccg gttgccagtg tcaatctacc gaaagcgaac gaggcttacc
      721 acgcaagctg gctggtttcg accattgagc aagcctgcac tacccaagca caacaaggcg
      781 gtgtgttgca tatcaatgtg ccttttgaag agccgcttta cgaagcagac attaatgaaa
      841 ttctaaatac accttggtta cgcccaatcc aaggctggtt gaataacgct caaaccaaat
      901 ggatagacca acaagcgatt caaagcgaag tctcaatgca cgaaaattgg gattactggc
      961 gaactaaacg aggggtgatt gtggtcggca aactgccgcc ggaacaaggc acaggtttaa
     1021 aaacttgggc ggaaaccatg ggttggtgct tgctaagtga tgtgcaatct tgcattgaag
     1081 ccagcctgcc gtatgccgat atttggctct ccaacgagac tgtcaaacag cgtttattgc
     1141 aagcggatat cgtgattcaa ttcggcacgc aaattgtcag caaacgggtg aatgaatttt
     1201 taaaagcatt ccaaggggaa tattgggtgg tggaacaatc gcacgattac cataatccaa
     1261 acgctcatca tcaaacccgt tttattgcca aagcacatca ctttttgcgg gtacacccac
     1321 cacttcgcca aaagccatgg ttgcttgagc cattggcatt atcgcaattc tgctccactt
     1381 tcatagagca acaagtgggt ggcagcttaa gtgaagcctc acttgcacac aacattcaag
     1441 atgttttagc aattaatggc aacttattta tcggcaatag cttatttgtt cgattggttg
     1501 atgctctgtg caaactgccg gaaggctacc ctgtttacac caaccgtggt gcaagcggta
     1561 ttgatggctt aatcgcaaca atggcaggca ttgcaaaagg tagcgaccgc ccgactgtcg
     1621 gtgtggtagg tgatatttcc gcattacacg atcttaactc aattgcattg ctcaccaaaa
     1681 ttaaccagcc gaccatttta tttgtggtga ataacagcgg tggtgcgttg tttgatatgt
     1741 tgcctgttga tagcaaagcg aaagatcaat attaccgcct tgctcacaac tttgaatttg
     1801 ctcaagtcgc cacaatgttc gggcttgaat atatccgccc gtttacttgg gcagatctaa
     1861 aaaccaaact caaacacgcc tatgctcgta aaggtgttac cattgtggaa atcaaagtaa
     1921 atgaacacga cggcagcaat atgtataaat cattgctaaa acaaatttca caggcggaaa
     1981 ttgcctaatc acaactgccc ctcgccaatc ctgcgagggg taaaaatgta tcgactatgc
     2041 tttcctatca atggcacgct caacaaggca cacccgtggt tttccttcac ggcttgctcg
     2101 gctcacaaca agactggcaa gctgttctcc aacatttgca aaattttccg caaattcgac
     2161 cgcttaccat tgaccttcct tttcacggaa atagtaagca cattacctgt gccgattttg
     2221 ccaacctgcg acaacaacta cacgccaccc ttgaaagcct aatcggctca cgacctttct
     2281 atttagtcgg ctactcactc ggtggacgag cggcactcga ttatgtgtta aatatggaga
     2341 atccgaatct gcagggcgtg gtgttagaag gggcgaatat cggcttaagc acagaaaacg
     2401 accgccagat tcgccggcaa aatgaccgcc attgggcaaa ccgtttccgt caagaaccca
     2461 tcgaacaagt gcttgaagat tggtacaaac agcctgtttt tgcggattta agcgatacgg
     2521 aaagagaatg ttatattgat agcagaaagc acaatcaagg agagcaaatt gctcaaatgc
     2581 tggaagccac cagcctcgcc aaacagcctg actacaccga aaaactcaag cagacggata
     2641 agaatattgt cttttttatc ggtgaaaagg atcagaaatt tcgcaaaatg gcatcaagcc
     2701 accaactacc aacacaactg attgctaatg cagggcataa cgctcatcgg gctaatgcta
     2761 aaaattttgt ggagaaattg gggttattga tactccactc cgacagcgac ctacggtcgc
     2821 aatcggttaa gcataacggt gcagctctgc tgcacaaaag ccccagtggg gcttaatcag
     2881 ccgtaggcta aatataacct agtacggctc agccgtgcta ggtgttaggg ctccccctgc
     2941 aaccgttgca ataagcgatc catcgcccga taaccaagtg cttccgctaa atgcagttgt
     3001 tgaatattcg cctcgccggc taaatcagca atagtccgag aaactttcaa aatacggtgg
     3061 taggctcgta ccgataaacc gagctttgtc aatgcagttt ctaaaaatag ggcatcttgt
     3121 gccgataatt ggcaatctcg ctcaatttct cgggtggtga gttgagaatt gattttacct
     3181 gctcgctcaa attgcatttt tctggctaaa aacactcgct tgcgaacctg ctcggtggtc
     3241 tctcctcgat tctccgtccc actttgcaat gctccttgtg gcaaaagtgg cacttctata
     3301 gagagatcga aacggtctaa gaaaggtccg gaaaggcggt ttaaataccg cattacctgt
     3361 tggggcgaag tgcggttatg cgtgccttga taatgccctg tcgggcttgg gttcatcgct
     3421 gcaattaatt gaaagcgtgc cggaaattgt actttagcgt tggctcggga aatcacaatt
     3481 tcgcctgcct ccaacggctg acgtaacgca tcaagcactt tacgttcaaa ttcaggcaat
     3541 tcatctaaga acagcacacc gttatgggca agtgaaattt cccccggttt ggggatcgag
     3601 ccactgtaaa aactagaaat aaatgtcata aaaactagaa atagctgtca gattatttag
     3661 aaaacaagaa ataggtgtca aattattatg agaaaaacac atagttttca acaggttaga
     3721 aaaattaaac ccacttggat gagtgtatcg gggcatattc catttagaaa cggagtcagt
     3781 attccctatg aatcgacttt agagcgtgat tttttgatgt atttcactta tctaccttca
     3841 gtagatgaag tcgtctctca accgactacc ctacctttcg tcaagaatgg gatcacttat
     3901 acctatacac cagatttctt cttgtcattt acagacggtc gaaagccgat gttaatcgag
     3961 gtcaaaccga aagcaaaatg gcagaagcac tggaaagaat ggaaagaaaa atggaaagct
     4021 gcaatacgtt tttgccaaga aaacggttat gtattccatg tgtatgatga agatcggatt
     4081 cgacatctag cgcttttcaa tctcaactat gttcagcgct ataagcgaat acaacatgaa
     4141 caagaagata tagatgctat tctagcccaa gtaaagctga tgggaaatac cactattgac
     4201 tatttactct ctcgattttt tgcaggttct ctatatcgca tgaaaggcct acaaatcatc
     4261 tatcacttac tggcaacgaa acaactacat tgcaattggt ttctaccact taatgaattt
     4321 accgaggtat gggggaataa tgatgagtaa ctctggattt acagaaaagc gctatcatca
     4381 ccgattagat cggggacgta ttattttgca aaaaggtaat atttacctaa atagagaaga
     4441 tggagaacag tatgaattgg ttgattatat ggatgaaccc tcccaactgc tcgtacgaaa
     4501 tctcaacact cgtacaacca aagtcgtcag tattcatcag cttgaaaatt tcaaaatgaa
     4561 cgagcgaacg gatctttctg tggatgtaac cgctattagt aatgaatatt gggagaaagc
     4621 ccaacaaaaa tatgaggcaa ttaaaccgtt attagggatg gatcaacatc ggccttacgc
     4681 agttaaggct cgtgcagaag atgttggggt gaaccctcgt acattatacc gttggttaca
     4741 agcctataat tccataggat ctatcgcagg tttagtcgat caaaaacgtg gatggcaaca
     4801 aggaaattcc cgtttaacgc cagagcaaga caagctgatc gtgcaggtaa tcaatgagtt
     4861 ttacctacat aaacaacgcc caactactga gcaaactatt agagaaattc gccgccgatg
     4921 caaaattgaa aaagtggaaa gcccaagcaa agaaaccatc cgtatgcgca ttttgcatat
     4981 ttcagaggaa gagcgattac ggaaacgcgg gcaacgagaa aaggcacgca acaaatttaa
     5041 gccgaagcca aatagctttc ctgatgcgga ttatccattg agtgtggtac aaattgacca
     5101 tacaccagtt gacctaatta ttgtggatag taagtatcgt aaaccgattg gccgaccgtt
     5161 tttgacggtt gcgatagata tatacagcag aatgattgtt ggttattacc tttcacttga
     5221 tgcgccttct gtaacttcgg tggcgatgtg tattgcacgt ggtattttgc cgaaagaacg
     5281 cctactgctt gatttaggtt tgcaaggctc agaatggaat gcttttggct acccagtgaa
     5341 agtgcatgtg gataatggcc cagattttca ggctttggat ttatctaaat cttgttctgc
     5401 acacggaatc catcttgaat ttagaccgat ggggcgacct gaatatggcg gacatattga
     5461 gcgtgttatc ggtacattta tgaaagaagt tcacagttta gcaggaacaa cattctccaa
     5521 catcaaagag cgtgactctt acgattcgga aaaagaggcc attatgactc tcgatgagtt
     5581 tgaaaaatgg ttggtacatt acattgtgaa tgtttaccac aaacgtgtgc attctgcttt
     5641 aggcatttct cctgaacaaa aatggaagat tggtattttt ggagatgaaa atgaagtggg
     5701 atgtggttat ccgcaacttc ctgttgatga acaaacacta ctacttgatt tcttgccaag
     5761 tatcactcgt accattcagc ataatggtgt aacaattgac ggacttcgtt attacgatgt
     5821 tgcgctaaat atgtatatca gtgattcaga tgaaagcggt aaatctaagg aatttctgtt
     5881 tcgccgagac ccgcgaaata tcagcaaaat ttggttttat gatccgaaat taaaacgtta
     5941 cttcccaatt ccatttgcaa atcaggcaat gcccgaaatg agcatttggg aatatagaga
     6001 ggttcgtagc cgaattgcga ataaaggtga taaatatatc aacgagcaac aagttttaga
     6061 cggtttaacc gagatgcgtg aaatggttgc tgaatcggct caacggacga aaaaagcacg
     6121 ccgtcaggct gaacgacaaa aaatgcacaa agcaagtaag ccaattattg aaacaaaagt
     6181 ggaaactaag gctgttgtac cagtcgtagt aacatcgaat ttgcttgctt tagatgatga
     6241 gagcttatct tttggtgagg tggactaatg caatacgaac atgttcatga aaaattccgc
     6301 catcttgtga cagcggacaa tcaggagagg attgcgttct tggacgagcc aagatggtta
     6361 ggttatggtg tcgccaaaga cattatggat aatttggttt ctttaatgaa taaaccaaaa
     6421 cgcccacgaa tgttgaattt gttgattgtc ggcgattcca ataatggaaa aaccacactg
     6481 atccgccgct tcttcgactt gtacggtcag gcgtatatcg acagtgattc taatgcgatt
     6541 taccctattc ttcttgccga agccccacca agtgcgaatg aaaaagaatt gtacatctca
     6601 ttattagagc ggttctacgt accatataag ccgacagata cgatagccaa acttcgttat
     6661 cagactatcc atttgttccg agaatttcgt gtcaaaatgt tggttattga cgagtttcat
     6721 tctctgttgg ttggtacacc acgcttacaa cgacaggtga tgaacgcaat taagatgctt
     6781 tgtaacgagc tacaaattcc aattgtcggt gttggtactc gtgatgcaat tcgggtatta
     6841 catacggatc gacaacatgc cagtcgtttt gatgttgcgg aattgccaat atggaaacta
     6901 gataaggaat ttcaaaaact cctatttcaa ttccaaggga ttttaccttt gagggagagt
     6961 tcaaatctgc aatctccaga acttgctacg aagatccaca ccatttcagg tgggaactta
     7021 gggaacgtgc atcgcttact aacagcttgt gcagttcaag ccattacaag tggcacggaa
     7081 aaaatcacct tagacatcat tgagaaaaat tcatgggtac aaccaacaaa cggctatcgc
     7141 aaaataatcg gataaaaaaa ggtgttattc atacccctat ttattcaaat gaaagtatta
     7201 gctcgtggtt aattcgtgca tcctttgatt gtggtacaga tccactgact tttacagggt
     7261 tttattggga aaaacatcgg ttgtggacat tagatttaga tcgtggcttg gaaaatattg
     7321 agccaactat ctatgatgat gtacaggcat tatcgggtaa aatccaactt tcagaatatt
     7381 ccttgtttcg caggctttac cctataaatg cagatgaaac cttagctaaa ggtcaagtaa
     7441 gatgggtgat tccacgttcg gcaaggaata gaacccatca cattggtcaa caatattgtc
     7501 ctttgtgctt ggatgagtcg ccacatttac gcaatgattg gcggttagcg tggaattttg
     7561 gttgtctcaa gcataatatg atgttggcga acagatgttt ttgttgtggt acattgtatc
     7621 aaccccattt actatcagcg gaaaagaggc atttgaatca ttgtcatcaa tgtggtggga
     7681 aactggaaca aggcacaatg gaaatgagtc tagctgaaaa gctgacattg caaggtatta
     7741 atcaggtact cgaaaaagat tcaggcatct gttttggata caaggtgtcg ggtaaggtgt
     7801 ggtttgatat gctccgctac tgcatcaact tattgagacg tgcatcagac agaccaaatc
     7861 atgccttagc aaaatttgta gttaatctac agattgatgt tgaaaatata tgtagcccca
     7921 aaacaggact ttcttttgaa caacttccgc taggtgaacg tacaaattta cttgtgaatg
     7981 cctatcatat tttgggaatg gaagcagatt ctattcgtag tgcaatttat ttgtgtggcg
     8041 gaacacaaaa aacctttatg tttgaaaaat atcctgattt ttggcaagaa tttatggcac
     8101 tagcacccgc aggcccaaat agaacacgaa aacgcaccaa gccccaaaat gagtctatca
     8161 cagcaattaa tcgccgttgg gagcgtttga aacgcaaact acacttaaat aacgaatgaa
     8221 aattaatgta ataaaaccac aggaagaacc ttgctccgct tgtggcaaaa tttctcgcat
     8281 ttggcgcaga tataatggcg aaggctactg tgccaattgc tatgctaagt ggtttccgaa
     8341 aaaagagtgc agctgttgcc atcaaccaaa gcgtatctat ttgagttcaa cagtatgttg
     8401 ggattgcgaa aaacagactg actgtgtacg ttgcggtaag gctgcgggta cattcaaaat
     8461 tggtaaaatt acccgttatg gtgcagtttg taatgtgtgt tcacgttatt ttcgtgaaga
     8521 acgagaatgt tttgagtgtg gtcaactatc tagaactatg cttcgagcat cagagtcagg
     8581 tcatagcgag ctactctgct tgaagtgttt tcaaaaatat cggtttgcga cttgtaaaaa
     8641 ctgtcgccgt tatcgcaaag ttcatgaccg tgataatcag ctttgtcgaa aatgtagtga
     8701 gcaacgaact tcacaatgcc cgaagtgcaa acaggatatg cctgcgggat atggtaatat
     8761 ttgtgcagat tgttctaggc gaactctact gttcaacctt attcgaatga atgtgcattt
     8821 attccgccac aaaaaagtga aaagagcata taaaaagttc attttttggt atctcgcaaa
     8881 gtgtggcgtg agtgttgtgc tgaaaaaatc agacgaccac gtcctctttt ttatgcgttg
     8941 cgatgaaaat tggggcaaca ttccagacta ccgtgagttg gttacattct ttaaacccaa
     9001 tggattacgg acgcatttga ctgtgttgcg ttggttgctt gataccaatc aagtcaaagt
     9061 agatgagagc ttaaaagagg aaatggcggg gttggaacgt attcaatccc tatttaacaa
     9121 attaagtaac tctgtacctt gtattgcaaa ctactacacg cagttacaac ataaatatga
     9181 ggcgggcaaa acatcactga aatctgttcg attagcttta caacctgcga ttgatttcat
     9241 cagttcagaa tctgtctcgt tactgccgac tcaagtacaa ctgaatagct atcttgtggc
     9301 aaaaacggga cagattgctg ctattacagg ctttataaac cacctgaacc gagaatatca
     9361 ttgtgaatta gaaattgacc gctccctcat tcaaaagatg aaagaaaagc agttgaagca
     9421 gcaagcaaaa cagcgattag cgatactcta caagcaagaa aaactaagta tcaaagagca
     9481 aaatgagcta ctctcagtcg tattactgaa tttgcacaac atttggataa aatcaccgaa
     9541 aaaattaagt atttcagaga tagacggtat agcctactat gttgataatg agaaaaaata
     9601 ctttatacca aaagacattc acatacgcct gatggaataa gctgtcgtca atttttattt
     9661 ttgcgatctg tgtcgagaaa ataatattta tgaatcgaca gatgaaataa tattgataaa
     9721 gtctctttgt gtgttcaaca aacaggagat aaatatgaca ttaaaggctc aatttcgtga
     9781 atggcttaaa aaagagcaag aacatgatga aatgataggg ttcgcccata tcccttgcat
     9841 tttatctaaa gtggatagca aactggcgat tgttagcgga aatgcttatg agaagaaata
     9901 tctcagatat tggatcaagt gttttaggtt cgatagaaat atcagcaagt atattaaata
     9961 ggttaaatat ctagct
//
LOCUS       DANMGB010000088         9938 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.088, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000088 DANMGB010000000
VERSION     DANMGB010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9938
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.088"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(35..1153)
                     /gene="malK"
                     /locus_tag="PXG19_001606"
     CDS             complement(35..1153)
                     /gene="malK"
                     /locus_tag="PXG19_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL6066892.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
     gene            1574..2764
                     /gene="malE"
                     /locus_tag="PXG19_001607"
     CDS             1574..2764
                     /gene="malE"
                     /locus_tag="PXG19_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL6066893.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            2883..4421
                     /gene="malF"
                     /locus_tag="PXG19_001608"
     CDS             2883..4421
                     /gene="malF"
                     /locus_tag="PXG19_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL6066894.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            4474..5364
                     /gene="malG"
                     /locus_tag="PXG19_001609"
     CDS             4474..5364
                     /gene="malG"
                     /locus_tag="PXG19_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL6066895.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            5439..7496
                     /locus_tag="PXG19_001610"
     CDS             5439..7496
                     /locus_tag="PXG19_001610"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL6066896.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(7610..>9938)
                     /gene="malT"
                     /locus_tag="PXG19_001611"
     CDS             complement(7610..>9938)
                     /gene="malT"
                     /locus_tag="PXG19_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL6066897.1"
                     /translation="EIHEALKYWIKHQPSNMTLILISRSIPPLSIASLRVQEQLLEID
                     INQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTALQLISLFAKNKSHTLQV
                     PLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCSVLHSMNESLVQAVTGEQ
                     NSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASFLNLCCQNELYAELPQLH
                     QKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVFHQGELKLLEESLNCLDY
                     AHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENKIELSKTANAEFNVLRAQ
                     VAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAHHCHGNLAEALAMLQKAE
                     RMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASEFVKENHLQKVPMYEFLL
                     RSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLTKISLARGNLDNTARLLG
                     EVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLIQNPSPVSDKNHFTQVQW
                     RNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALIVRNRLYFLQGEKELAQQ
                     DLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDELVLHKAQFILRNINQFYR
                     QKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIYSGYSNEQISDELQVAAT
                     TIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
BASE COUNT         2944 a         2029 c         1950 g         3015 t
ORIGIN      
        1 aataccctct aaaatcagta ataaactgaa attgttatac ccctttttca acaaacaaac
       61 gtttgcaagc tgtaccgtct tccttaaata aatggcagcg ttccggcaat ataccgatat
      121 tcagatcgtc gccttcatta actaatacca catcgttttg acgataaatt aaggttggtt
      181 gtttgatttc agggatttca aggtggattt gtgtttcatt tccgagcaat tccacaactt
      241 gcacaatacc gtgtaaggtc acttgggttt gatccgaagg aactaaatgt tccgggcgga
      301 tacctaaaga taagttatct cccacattca ccccttcgcc ggaaaccgga atccaaaaat
      361 tatgatgatt cgcatcaggt aactcaattt ttacccgttc cggctctacc gcaatcactt
      421 ttaccggtaa aaagttcatt ttaggcgagc cgataaaccc tgctacaaag cgatttgccg
      481 ggtaatgata aagttctaac ggtttaccta cttgagcaat accgccggca tttaatacca
      541 cgattttgtc cgctaatgtc attgcttcaa cttgatcgtg cgtaacataa atcattgtgc
      601 ggtttagttt tttatgtaat ttggaaattt ctacccgcat ttgtacacgc aatgcggcat
      661 caaggttgga aagtggttca tcgagtaaaa atacttccgg ttgggaaacc agtgttctac
      721 caatagccac ccgttggcgt tgtccgccgg aaagtgcttt aggttttcga tctaataaat
      781 gggcaagctg taagatttcg gcaacttggt taactcgttg atcccgctct gctttactta
      841 cacctgccag ctttaagcca aaagacatat tttcggcaac gtctaaatgt ggatagagag
      901 cataggattg gaacaccata ccgataccac gttttgaagg ctctacttca ttcatcagtt
      961 ttccaccgat atagagttct cctgtcgtaa tatcttccaa acctgctatc attcgtaata
     1021 gcgtagattt gccacaacct gacggtccaa cgaaaacaac gaattctcct tcgttaattt
     1081 ctaaattaat atccttagag atatgaacat caccatacga ttttcccacg ttacgtaatg
     1141 atacattcgc cataactaaa cctcttttct gcttttgctt gttggtttta tttaggctga
     1201 atagtcgcct ttttatctaa agaagaaatc atcctaaaat actttttttt aggctgaata
     1261 gtcgcctttt tatctaaaga agaaatcatc ctaaaatact tttttttagg gttagagcca
     1321 tagccataat tatttaaaaa acgccaattc agaaaaatta aataaatttt gtgatcaacc
     1381 tctcattttt aatgcctatt tttgtgaagc agatcacaaa atgataaaaa atgttactta
     1441 gatcatactt ttagcttggg gggcgtagag caaagggtga tctcaaatag attgtatagc
     1501 ccataatttg ccataattta ataaatgggt tgtttcatat ccgtttcttt tatttaactt
     1561 caaggagttt tttatgaaaa acaaatgtgt caaattcacc ttagctactc ttgctacctt
     1621 agttctttca ggaacagtaa tggcaaaaat gacggaaggt aaactcgtta tctggattaa
     1681 cggtgataaa gggtacaatg ggcttgccga agtcggtaag aaatttgaaa aagataccgg
     1741 tgttcaagtt ttagttgaac acccggatag acttgaagaa aaatttgcac aggttgcctc
     1801 aactggtgac ggtccggata ttatgttctg ggctcacgac cgctttggtg gttatgcaca
     1861 atccggttta ttggctgaag tgaatgtaag caaagaattt aaagataaat ttgtcgattt
     1921 tgcttgggat gctgaaactt acaacggcaa aattatcggt tatccggttg cgattgaagc
     1981 gatttcatta atttataata aagatttagt gaaagaagca ccaaaatctt gggaagaaat
     2041 tattgagtta gataaaaaac tcaaaaaaga gggcaaaaat gccattatgt ggaacttatc
     2101 cgagccctat ttcacgtggc cgattgcggc ttcaaacgga gcttatgcat tcaaatttgc
     2161 taacggcaaa tacgatccaa aagatattgg tgtgaacaat gaaggggcag taaaagcact
     2221 acaatttgta gtcgatatgg tgaaaaataa acatattagt gcggatatgg actatgccgt
     2281 tgccgaagcc tcctttaata aaggacaaag tgccttaacc atcaatggtc cttggtcttg
     2341 gggcaatatt gataaaagcg gtattaaata tggtgtaact ttactcccaa cattaaacgg
     2401 tcaagcttct aaaccattcg taggggtgtt aagtgccggt gtaaacagct caagcccaaa
     2461 taaagattta gccaaagaat tcttagagaa ttatttactc accgacgacg gtttagatgc
     2521 agtcaataaa gataaacctt taggtgcggt ggcgttaaaa tcttaccaag agaaattagc
     2581 ggctgatcct cgtattgctg caacgatggc aaatgcgaaa aacggtgaaa ttatgccaaa
     2641 tattccgcaa atgtcttctt tctggtatgc cgaaaaatct gctatcaata atgcagtgac
     2701 cggtcgtcaa tcggtgaaag aagcattaga tgatgcacat tcacgcattc aaaaacaaca
     2761 ataattcttc atcattctga gtgggttatt atgacccact ctatttttag attcacccta
     2821 aatacaataa aagtacagta aaagtaccgt aacaaaatgc agtaaaaatt cgaggtgctg
     2881 ttatgctaac tcaaactcaa tccaaatcca ctcattggct caaatatctc ttagccggat
     2941 tagtcttgct ccttgacttc tatcttgttg tcttaatgta ctcacaaggt gaatatcttt
     3001 ttgctatttt aacgctgatt attctaactt ccggtgtcta tatttttacc aataaaaata
     3061 cctatgcttg gcggtatgtt taccctggca ttaccggaat ggcaattttt attttgtttc
     3121 cgctggttgc gactattgca attgcgttta ccaactatag tggttctaat caattatcct
     3181 ttgaacgagc ggtatccgtc ttaactgaac aacgctattt tgccggagat aaatatcaat
     3241 tcacccttta tccgcaagca gataataaat atcaaattgc attaaccaat ccgacgacag
     3301 agcaaacttt tgtgtcagag ccgatttcat tggctaccgg aacgaatgtg gttgtaaccg
     3361 agcaaaacag accaactggc gaagtcgctc cccttaaagt gattacgcaa aatcgggccg
     3421 cacttcaatc aatgaaagtg gttttaccga ataataatga actgacaatg agctcattac
     3481 gtcaattctc cgagcaaaaa ccacgctatc aatttgatga agaaaataaa atattactca
     3541 ataatgagac tggcaaacgt tatcaagcaa atgacgaaac cggtttcttc caatcgattg
     3601 atgaaaacgg tcattggcaa agcgaaacac ttgaaccagg ttatactgtc acatcaggct
     3661 ttaataactt cattaaaatt tttaccgatg aaggtattca aaaacctttt gtccaaatat
     3721 ttatttggac ggtgatcttc tctttattaa ccgttgtctt taccgttatt ctcggtatgg
     3781 ttcttgcctg tttggtacaa tgggaggcat taaaaggtaa agcagtctat cgtgtcttat
     3841 tgattttacc ttatgccgta ccatcattta tttcgattct gatttttaaa ggactattta
     3901 accaaagttt tggtgagatc aatatgattt taaaccaact attcggcatc agccctgaat
     3961 ggtttaacga tccgctcctt gccaaagtga tgatcttaat tgtcaatacg tggttaggtt
     4021 atccttatat gatgatttta tgtatggggt tactcaaagc tattccggct gatttatatg
     4081 aagcctccgc aatggacggt gcttccactt ggcaaaactt cagtaaaatc actttcccat
     4141 tactgttaaa accacttact ccgttaatga ttgcttcgtt tgcatttaac tttaataact
     4201 ttgtattaat tcaactatta acaaacggtc gcccggatat gattggaaca accactccag
     4261 ccggttatac cgatttatta gtcagctaca cctatcgtat tgcctttgaa ggaagtggta
     4321 cgcaagattt cggcttagca gccgccatcg caaccattat tttcttatta gtcggtggct
     4381 tggcactctt aaatatcaaa gcaaccaaaa tggaattata aaagcgggag ggatttaaca
     4441 atcccgaccc caaactaact ttaggagtta tatatggcaa ttgttcaatc taaatctgtg
     4501 cgttatcggg tatgggcaac ccatttcatc ttaatctgtt tccttgcctt aattattttc
     4561 cctttattaa tggtgattgg catttcgtta cgaccgggaa atctggctat cggtgatatt
     4621 attccaagcc aaatttcgtg ggaacattgg caagccgctc ttggttttga tgttacacac
     4681 gccgatggta cagtcacacc gccgccattc ccggtgctac gctggttatg gaactccatc
     4741 aaagtggcaa caattacctc tatcggcatt gtaaccttat ctacgacctg tgcttatgca
     4801 tttgcccgaa tgaaatttaa aggcaaaaaa accattctac aaggtatgct gattttccaa
     4861 atgttcccgg cagtgctttc cttagttgcc ttatatgcgt tgtttgatcg tcttgggcag
     4921 tatgtaccgt ttcttggttt aaacacacac ggtggtgtta tttttgccta cttaggcgga
     4981 attgccttac acgtttggac aatcaaaggc tactttgaaa cgattgatgg ttcattggaa
     5041 gaagccgctt cccttgatgg tgcaaccccg tggcaagcgt tccgattaat cttattaccg
     5101 ctttcagtgc cgattttggc ggtagttttc attctttcat ttattgccgc cattaccgaa
     5161 gtaccggttg cctcactcct attgcgtgat gtaaacagct acaccctagc cgttggtatg
     5221 caacaatacc tctatccgca aaactattta tggggtgact tcgcagcagc ggcggtctta
     5281 tccgcaattc cgattacgct ggtcttctta ttggcacaac gctggttaat cggtggttta
     5341 actgccggcg gcgtgaaagg ctagtttgca aaaaattctc taaaaacgac cgcttgtcga
     5401 gctgatactg cggtcgtcaa tctttattag ggctgtctat gaaaaatgcg ttaccttatc
     5461 tctgcttatt ctatacctca agcctttttg cccaatcttg gcaacattcc catttttctg
     5521 attttaacga tgatctcgaa aaacattttt ttcaatccca agttcaattg gaaaaaggga
     5581 gctatccgct taggttcaaa tttggcgaac aatgttatca accccaacaa gcgataaaat
     5641 taaatcaatc ggttgcgtta gtcccttgta taaatgaagc tccacaactg cggttgtttc
     5701 gtcaaggcaa ctatctggca caaattgatc tgcgaagcgg cactccgaca cccacaatca
     5761 gcgtagaaca gcagctacag cacaatgaag cgatgtttca aagttgcccg aattgggata
     5821 aaaaaccgat tgaaattgat gtttcttcca cttttgccga aggcgaatcg gttagcgatt
     5881 tttattcagg caacaccgct atcgttaaaa acggcaaagt caccttaatg cccaatgaaa
     5941 acgcaagcgg tctgattttg ctggaaaaaa gcaataccga aaatacggca acgtttgatt
     6001 ggaaaaatgc caccgtctat tttgtgctga ccgaccgctt ttataacggc gatccgacca
     6061 atgaccacag ctaccaccgc caaaaagacg gaatgcaaga aatcggcacc tttcacggtg
     6121 gtgatttaaa aggattaacc gaaaagctcg attacctaca acaacttggg gtaaacgtat
     6181 tgtggattag ctctccgtta gaacaaatgc acggctgggt tggcggcggt gataaggggg
     6241 attttccgca ttatggctat cacggttact atcatttaga ttggacgaaa ttagatgcca
     6301 atatgggtac tgaagacgat ttaagtcgct ttgttcaaca agcccaccag cgtggtattc
     6361 gggtgctatt tgatgtggtg atgaaccata ccggctacgc gacgcttgcc gatatgcagg
     6421 agtttaactt tggcggattt tacttaacac cggacgaaat tagccgcaca ttaggcgaaa
     6481 aatggacaca ctggaagccg aaatcaggac aaaattggca cagtttcaat gatttcattc
     6541 gctttaacga taatcaggct tggcaaaatt ggtggggaaa agaatgggtt agagctgata
     6601 ttgccgatta cgacagccct aaatttgatg atttaaaaat gtcgctcgct gcccttcctg
     6661 atctaaaaac cgagagcgaa caagcggtca aattacctga attttttgca aataaaaata
     6721 ccaatgccaa aacattacca aacgccaaag tgcgtgatta tttaattggt tggttatccg
     6781 attgggtcag aaaatatggc attgacggtt ttcgggttga taccgccaaa cacgttgaaa
     6841 aatccacgtg gctggtatta aaacaatcgg cacaacaagc cttaaacgaa tggcaaaaag
     6901 ccaatccgaa cgccggtttt aacgatcgct tttggatgac aggagaagcg tggggacacg
     6961 gcgtgttcaa aagtgactat tatcaaaacg gttttgatgc aatgatcaat ttcgattttc
     7021 aagatcaggc taaacaaggg ttaaattgct ttgcccatat tgagccgatt tatgccgaaa
     7081 tgaatcgcaa attaagcgac ttcaatgtgt tgagctattt atcttcacac gatactcgat
     7141 tatttttcca ttcggatagt gaacaaaata tcgaaaaaca caaaaccgcc gcaaatttgc
     7201 tgttgctttc acccggtgca gtgcaaatct attatggtga tgaaagtggg cggacatttg
     7261 gtgcgaccgg ttcagacctg atacaaggca cccggtcgga tatgaattgg caagagttgc
     7321 agcaagatcc tcagaaacag gcattgcatc aacattggca aaaattgaca caattccgcc
     7381 aacgccatcc ggctattggc gcaggtgtcc atcaactcat caaaaatgat agctactttg
     7441 catttaagcg tgtgttgaat gaagataaag tgatggtggt ttgggccgga aattaaatct
     7501 actttagctt caagttttct ctcttctggg gaaaacttga agccggttcg gggaaacaag
     7561 ttgcaaaaaa ttactaaaaa tagaccgctt gttccccatg agcttgtgat caatgatacc
     7621 ccatcaacat cagcagttct ttcgtatagc tgattgcttc gttacgattc gtcacaccga
     7681 ttttctgata aagatttcgg atatgggttt taatcgtggt tgcagccact tgcaattcat
     7741 ctgaaatttg ttcattgcta tatccggagt aaatcaaacc caatacttgc cattcccgct
     7801 gagtgagcgg actaattttt aagagttccg gcactttcgg atttttcaat aattgattca
     7861 caaagttttc atcaaaatgg gcaaattttt ggcgataaaa ttgattgatg ttgcgtaaaa
     7921 taaactgtgc tttgtgcaat accagttcat ctagcacatt aagttgcaat aaatggcgga
     7981 tctgctgtgc cattacatcc ccttcaatca caaacgcact gataaaattc gtttggcggg
     8041 tgagttttag tgcctgaatt aaatcttgct gagccaattc tttctcgcct tgtaaaaaat
     8101 aaagccggtt acgaacaatt aatgcgcgat ttaaatcgct aatcagagaa aatttttcag
     8161 ccgtttcaat taaattatct aaaatggctt tcgcctcgtg atattcctca agcaagattc
     8221 gagaccgtgc aatatttcgc cattgcactt gggtaaaatg atttttatct gaaaccggtg
     8281 aggggttttg aattaaccag ttcctcaccg cagaaacgtc attggtcatc tgccaataaa
     8341 atatacgtac ctgatcggcg ttggcaatcc aatcgtggtg ataagaatga gaatgttcta
     8401 attgttcgac ctcgcctaat aatcgggcag tgttatccaa attgcctcga gccaacgaga
     8461 tcttcgtgag taaagttaag cattgtaact tatcttcaaa tttagataag gcattcattc
     8521 cggcaactgc cattgattca gctttatcta agttatacca ttcccataaa atcttgcctt
     8581 tagaacgtag caaaaattca tacatcggca ctttttgtag atggttttct ttcacaaact
     8641 cgcttgcttt atctaacatt tcataggctg cttgtgaaaa cccttgggca agcaaaattt
     8701 cagattgttg aagctgtgac cacaaaatat tgtggtaagt atgatgctga cgtgccatac
     8761 gctctgcttt ttgcaacatt gctaatgctt ctgccagatt gccgtggcaa tgatgagctt
     8821 cgccaataat agacgttgca acaatatgag cataataggc attttctgaa agatcgttta
     8881 acgcttcaga cgctaattga agtgcggtat tctcatcacc ggaattgata gcaacttgtg
     8941 cccgtagcac attaaattcc gcattggcag ttttgctcaa ttcaatttta ttttcagtta
     9001 atgcacgaga aaaatccgct aaaataccac ctacttcaat atggcggtgc tggctttgta
     9061 ccaaccaggc tttgagtaac accaaattag tatgttcggt taaatgggcg taatctaagc
     9121 aatttaagct ctcttccaat aatttgagtt ctccttgatg aaacaccgtc caagcgtgtt
     9181 tgctcaaaat attgagtagt aatccggtat ccgataactg cattgcgtga tgtaaggctt
     9241 ctgtaacata gcctaattgt aaccacgcat tcgccgcctt ttgatgcagt tgcggtaatt
     9301 cagcatataa ctcattttgg caacataaat ttaaaaagga agcaaaaagc ggatggaatt
     9361 tccaccagct atcatcacta ctctgccact tactgtttgc catttgttgt aaaaacaaac
     9421 cttgcttttc gagagactct aatttggtgc gactgttttg ctcccctgta acagcctgca
     9481 ctaaagactc attcattgaa tgcaaaaccg aacaacgcaa aataaacaaa cgagtctctt
     9541 catcgacttt attaagcact tcatcggcta aatattcgtt aatatgaaaa tggtttgatt
     9601 tggctaaacg tttggcaata tcttgcagtg gtacttgtag cgtgtgtgat ttattttttg
     9661 caaaaaggct aattagctga agggctgtgg gccacccttc aacttcgtta cacagtgcga
     9721 taacatcttg ctgatttaac tccgaaccta atcttgcttg aaaaaaagcg gtactttctt
     9781 ggtgatcaaa cattaactgg ttaatatcaa tttccaataa ttgttcttgc actcttaaac
     9841 tggcaatact taacggggga attgatcgag aaatcaagat aagcgtcata ttagacggtt
     9901 gatgtttaat ccaatatttt aatgcttcgt gaatttca
//
LOCUS       DANMGB010000089         9894 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.089, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000089 DANMGB010000000
VERSION     DANMGB010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9894
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.089"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(33..722)
                     /locus_tag="PXG19_001612"
     CDS             complement(33..722)
                     /locus_tag="PXG19_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL6066898.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            complement(734..2074)
                     /locus_tag="PXG19_001613"
     CDS             complement(734..2074)
                     /locus_tag="PXG19_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL6066899.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSAE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            complement(2136..3494)
                     /locus_tag="PXG19_001614"
     CDS             complement(2136..3494)
                     /locus_tag="PXG19_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL6066900.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            complement(3547..4323)
                     /locus_tag="PXG19_001615"
     CDS             complement(3547..4323)
                     /locus_tag="PXG19_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL6066901.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIAPVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            complement(4325..4957)
                     /locus_tag="PXG19_001616"
     CDS             complement(4325..4957)
                     /locus_tag="PXG19_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL6066902.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            complement(4954..6195)
                     /locus_tag="PXG19_001617"
     CDS             complement(4954..6195)
                     /locus_tag="PXG19_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6066903.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            complement(6197..7102)
                     /locus_tag="PXG19_001618"
     CDS             complement(6197..7102)
                     /locus_tag="PXG19_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6066904.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            7276..8034
                     /locus_tag="PXG19_001619"
     CDS             7276..8034
                     /locus_tag="PXG19_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6066905.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(8174..9565)
                     /gene="ffh"
                     /locus_tag="PXG19_001620"
     CDS             complement(8174..9565)
                     /gene="ffh"
                     /locus_tag="PXG19_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL6066906.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT         2819 a         2217 c         1985 g         2873 t
ORIGIN      
        1 atagcctctc ctaaaatgaa tatatctgtg gtttattgct gtaattccac aatacaagtc
       61 acttgactgg aatctaaccc tttaattcgc cacggtgcat taaaaaactg cttaatgttg
      121 gcatttttag ggagttccgc taagtgcata tcttcaatca cagtggtaaa cctgccggta
      181 tagtagccta aaatcgctcg atggcaattt ttagggtttt ccgcatcagg cactcgggaa
      241 gaaggagacc ctagtgccaa gaaatcaatg cctactcctt tcaaattcgg gaaagtatca
      301 gataaatact gcccggcacc ggttgaaata taggggcatt cattttgata aatagcaggg
      361 ttctcggttc tatatttctc aaaccccgtt cgtaaaaagg caaaagacac cttggagaga
      421 atatcgacat aaggcaataa atcttctttg gtgatccctt ctgcctctcc tttgggaatt
      481 tcaattaaag cgacctcttt atggcagaaa tactctatcg gcaattcatt gatacttaaa
      541 ccgtctttca caaagtggcg aggagcgtcc atatgtgtgc cgcaatgatt cggtagtttc
      601 gtgataaaac tgctaaatgg cgtttcttca cctacgtctg tgcagcgagt cacctcaaca
      661 acaggttctc ccggccaagc taaatcttta ggatctaacg ggtgagacaa atacataaac
      721 acagtgagcc tccttagtgg cgtttttgct gaagtaacca cccaatcacc tcagggctgt
      781 tatacacagc gtcccaagta ttatgagggt tattattgac aatgccgttg tcgccggctt
      841 gttcaaaagt gaattcggta tatttcacat tgggggcatt taactcatct ttgagaatgc
      901 ggtagttaat gcgagaacct tttaccggcg agactttgtc ctctttacta tggaaaaacc
      961 aaatcggtat atgtttaatt gccgccaaat tcgttttggt ggcattgccg tccacccatt
     1021 cgttggtgta ggcttcacga ccgctcatta ataatgctcc ggcaaagaaa ttcgggcgag
     1081 ccaacaacag atttaagccc ccttcagcac ctcgagataa gccattgata taaatgcgtg
     1141 tggtatcaat ttgaggattg gcttttaggg tttcatcaat catttttaac acgagattga
     1201 tacgattttc cgtttgccag tgaataccgc ctttttgccc tttggcggca ttatcaaatg
     1261 ggtcgaatac ttggtcgtat tgcggagcaa gtacaaaact tggggcataa ggcagggtgg
     1321 caatcgcccc tttactggaa agcaggtgag caaggttatc cgaaccgact tgccctgaac
     1381 cgtgtaggaa aatcacaagc gggtattttt caccattttt ttgcaaaggc gaatagagac
     1441 ggtagttcag tttatttcca gactggtcta agctcacttg ttttgcgaca aaatcatcga
     1501 gataaggggt tttgattttg tcgggttcag cggtttgtgt ccattcagtc ttgcctagag
     1561 ttgtgccgct ggttaattta agcaagcctt tttgttccgc cgaatagatt aggcgatttg
     1621 caaaaaactc tggaattttg accgcttgta ctttctctgt ttctacaatg ttgccgtttt
     1681 catctttgga tttaaatttc atcggcgctt tattagcatc ttttacgcta taagttgccg
     1741 catttttatc tgccgtatcc aattcaataa tcacaaattt accggcttgc ggaagtgcgg
     1801 tcacttttgg ctcattattg acataggctt tgagcaccga acggttttct ttctccgcac
     1861 tatctaatgc cgttttgacc tgatacagtt ggcgaagatc gctgcctgat aagacattat
     1921 caggatattc caatgccacg ccgttaattt tttgaccttg agcggtgatt tcggcaagca
     1981 acgtaatatt cgctgattta ttttcctgaa tcatatcctc tgcatagagg gagtgagaaa
     2041 gtaatagcgt aaataaaagt gtttttttca gcataggttt ctcctaaaaa aatccacctc
     2101 ataagaggtg gattttaagc agtaacagag tgatattaaa cgaataacat ccaaataatg
     2161 ccaacaacgg caaaggctat tacaccgaaa atagtcgtta aaaacgtcca agttcttaag
     2221 cctacggata caggaacatt gaagaatttc gtccataccc agaagagtga atcattcacg
     2281 tgggataatg tcatagaacc tgcaccaata gctgcagtaa gaagtgctaa ttgcagatca
     2341 ttataacctg ctgctacagc tgcaggagct agaatagttg tagtagtaat agttgccacc
     2401 gttgcagaac cttgtgctgc acgcaataat gcagaaagta tgaaagaaag aaccaataac
     2461 ggtaagcccg tgttggctaa tacatctgct aatgctttac ctacgccact ggcatctaac
     2521 actttaccga acataccgcc tgcaccggtg attaaaataa tccccgcaat cggtgctaac
     2581 gcagactcca gtacttcttc taatttatgc ttagtccaac cgtatctaaa acctaataca
     2641 taagcagaaa gacaaacagc cacaaataag gcaaacggag agcttcctac catactgaat
     2701 acttcacgca cgatatgttc tttcggcaag gttgttgccg ttactgtacc taacataatc
     2761 aggattagcg ggaaagaaat cattgctaac actttaccaa aagaaggtag ttcaatgcct
     2821 ttctctttaa tcaaatcttt ttggtgctgt aaaagatcgg ttgaagttac tacttttacg
     2881 aaattatttt ttgtaaagaa cggaataaat ttttgaccga ttaaatatgc aggtagcgct
     2941 gctactaagc caattcccaa tacaaagcca atatctgcgt ttaagttttg agcacccgct
     3001 acaatacctg gatgaggtgg aactaaaacg tgaacaagta acatcgcaag cccgattggc
     3061 aaagaataaa caaggatatt tccccctaaa cgtctcgcta cactaaaaat aatcgggagc
     3121 aatacgataa aaccaacatc aacgaaaaca ggaataccga atataaaacc tgtcatacct
     3181 aatgcaaagg gagcgttttt ctcaccaaaa cgctgtaaca accaatttgc taatacatcc
     3241 gcaccgtgag atttttcaat gattttccct aacattgctc ccaaacctac tatgagtgca
     3301 acgctaccta aagtacttcc catacctgaa atcaaggttg ggatcacttt actcattgga
     3361 atacctgcag ttaaggcaac tgcgatactc actaacccca atgctaagaa tgggtgtact
     3421 ttacctttaa tcataatgac cagaagagca actacgcttg ctaatccaat caaaattaac
     3481 atttcatttg acataaagtt tccttctaaa tgttgtattc acgtatttat ccgctaatca
     3541 tcgtggttat ttatactgct caaaccaacc tagtcctgag gtggtttccg ctcgtggttt
     3601 atactcgcaa cctacatagc cttcataccc gatttcatcg agtttgttga agatatattg
     3661 gtagttaatt tccccttcgt ccggttcgtg gcgatctggc acaggggcaa tttgaatgtg
     3721 ggcaaattta cccttgagtt tgtcggttag gcgagataag ttgccgtcca cattctgtgc
     3781 gtggaagtag tcaagctgta caaacacatt gtctcggttt accgcttcca caatttctag
     3841 cgtatcaaac tggcttttaa gcagataatt cggtttcact tcagggctta gggcttcaag
     3901 caagacgtta atgccgtgcg gtttgaattt atcggcggca tattgcacgt ttttgataaa
     3961 ggtttgttta taggcttcac gatcttcgcc ttctggcacg accgctgcca taacgtgaac
     4021 attctcacaa cctaaggcga gggcatattc caacgctaaa tcaatatcac gatggctatc
     4081 agcttcacgc cccggaatgg cagaaacacc ccattcacct tgagcaacat ctccggctgc
     4141 ggtattgaac aacacctgtt ttaagccata ttgctcaagt ttggctttca attctgctgc
     4201 cggataatca taaggccata aatactcgac atatttaaat ccagcgttgg cagccgcttc
     4261 aaaacgatct aaaaacggca cttcgttaaa catcatcgta aggtttgctg caaatttagg
     4321 cattttattt tcctctgttt ttcagatcat tgacttcgtc atcggtgaga taacggactt
     4381 tttgaccttg tagaataaaa tagagcttgg aggtttcttc caactcttct gtgttatcca
     4441 ccgcatcacg caagtctgaa cctgtgacta ccaccccgtg atttgccagt aaaaaggctt
     4501 tgccgtctaa ggctcgttcc cccagctctc gggcaatgtt gatgtcgccc ggacggtagt
     4561 aaggaatgac cggcaatttt cctacccgca tcacatagta aggggtgaaa gcacgcatag
     4621 cgttgtcggt atccaaattt tccaagcaag aaagtgcggt taaataagtg gaatgcagat
     4681 gcactattgc ttggcaagcc ggatttttct gatacatcgc caagtggaat accgattctt
     4741 ttgaaggttt atctcctgaa agaacattac cctgcatatc caatacggaa aggcggtctg
     4801 cctctaaacg cccgagcgaa gagccggttg gggtaactaa aatgcgattt tcatctaaac
     4861 gcacggagag gttgcccgca ccgccaacgg tatagccccg ctcaaacagc gagcgggcaa
     4921 gattgaccat ttcaatcttt tgttcttgtt ctgtcataca aacatctcct gagcaaaact
     4981 gaagaaatct tctttaccga agttacccga tttcaatgca agaaaaatcg gtttttcgac
     5041 cgcttgtaac cacggcacgc ccggtgcaat ttgtttgccg atgtggaaac cgctgaatcc
     5101 aagttgctga accacaatgc tcgaagtttc accgcctgcg gtaataaagt tagttacgcc
     5161 tgcggcttgt aatttttcgg ctaatttggc aaaggtattt tcaatggcgt ggctggcttt
     5221 atcgccgccg aattgggttt gaatctcttt caatttttca gggggaacgg tggcataaac
     5281 cattggggca aagtcaccgt ctaggtttgc aatcacccat tgataaagcg tttctacata
     5341 gttcggatcc tgaatggctt tttccgcttc taagaaataa cttggggctt tttgctggta
     5401 agccgccact tgggtattgg tcattaccga gcaagaaccc gaaagcacaa cggttttgcc
     5461 tttgcttggt acaaacgcat tcgtgccttt tttgccgcct gaacggtaag ccgccatata
     5521 agcccctaag cctgaaccgc ctgtgactaa ttgaaaatcg gcaaccgctt cggcaagcac
     5581 cgcaagttgt gaattatcgg cagcatctac taccgcatat ttgtagcctt gctgtttcaa
     5641 ttcagcaaaa cgggctttca cacgctctgc cccttgaatc acatcagcat aggcaaccaa
     5701 gccggttttg ccttgagatt gtgcatccat taaacgcacc aagttggcat ctttcatcgg
     5761 ggtaatcggg tggttacgca taccagattc attcagtagc acatcgccca caaacaaata
     5821 gccgttgaaa atggttctgc cattgacagg cagagccggt gtgactacgg taaaatcggt
     5881 atctaatgcc gccattaggg catcggttac cggcccgata ttgcctttct ccgtgctgtc
     5941 aaaagtggaa caatatttaa agtagaattg cgagcaacca ttttgtttca gccaatctaa
     6001 ggcttgtaat gattgttgga ttgcttcttc cacagggtta gagcgagatt tcaggctaat
     6061 cacaatcgca tcaacttgac tgttaagtgt agttttcggc acaccattca tttgcaccgt
     6121 ttttagcccg ttttcggtta agaaactggc gatgtcactc gcaccggtga aatcgtctgc
     6181 aataatgcct aacatcttat ttcccctctt ttttaggtaa ttcgatacca ctgaaaattt
     6241 taatgaccgc actatcatct tccttgccgt aacctgcgtt gctggcttcg gtaaacatag
     6301 aataagcggt gctggctaag tgaagcggga aacgcaaaga ttttgcggtg tcgttcacca
     6361 atcccaaatc tttcacaaaa atatccacca tagagagtgg ggtgtaatcg ccctcaacaa
     6421 cgtgtttcat tcggttttca aacatccaag aattgcctgc cgcattggtt acaacgtcat
     6481 acattaaatc aagcggaata ccggcacgag ccgccaatgc cattgcttct gcacctgcgg
     6541 caatatgcac accggcaagt aattgatgga taatttttac cgttgcaccc aagccgactt
     6601 cttcgccaat gttatacact ttgcctgcaa ccgcatctaa taccggtttt aatttctcga
     6661 atgcctcgct ggaacctgat gccatcacag tcatttcacc ttgtgctgct tttgctgccc
     6721 cacccgaaac cggagcatct aacatcacca agcctaaatc tgttaacttc tgtgaaatat
     6781 tttttgcatc ttgtgcagaa atggtggaag ataccatcac caccgtacct tgtttcaaat
     6841 gttgggctaa gccgttttca ccgaataaca ccgcattcac ttggttggca ttaaccacca
     6901 acaacaacac cgcatctaat tcagcggcaa aatcgaccgc acttgtgccg actttcttag
     6961 cacctgctgc ttttaaggtt tccagataat tcgggttaag atccacaccg tatgtgtcta
     7021 atccggcagc gatacaagat tttgctgctc ccatacccat tgctcctaag ccgatgacgg
     7081 ctacgctata tttttgactc attgtttatt ccctcaaata aattaatgaa cttgatggcg
     7141 gtatattaac caatagaaaa gataaaatct gtgatgaaga tcacaaatat taacaataaa
     7201 tgtgaatttt tgtgatttta attttggaaa ctaaatctga tataatctct tttaacaatt
     7261 aaaataggtt aaaaaatgat ccccttagag agacaacgag aaatactacg acttattaat
     7321 aataatggtg tcgcaagtat taattttctg gcagaacagc taaaagtatc acatatgaca
     7381 attcgccgtg atattcaaaa gctggaagag caaggtaagg tatccctagt atctggtgga
     7441 gttcaatctc ttgaacgatt aatcatggaa ttaccacacg atgataaatc aatgttattc
     7501 caagagcaga aatcagctat aggatcttta gcatcacagc taattccctc aaacacaact
     7561 atttatcttg atgctggaac tactacatta gaaatagctc atcggataat cgatagaaat
     7621 gacttactag ttgtaacaaa cgattttgtt attgctcact atcttagtaa ttcaggaaaa
     7681 tgtgatttaa ttcatatagg aggaagtgtc tgtaaagaaa acctatcgac aactggttca
     7741 cttgcagcag aatttctgaa aaacctatca atcgatatgg catttatatc tacttcatcc
     7801 tggaatttaa aaggtctaac aacgccgaac gaaaataaaa tccccgttaa aaaagcaatt
     7861 ttagaggcat ccaagcaaaa cattttagtg acagactctt caaaatatgg aaaagtcgca
     7921 actttttttg tttgccctct tactgtattt gaccagatta tttgtgataa aggattattt
     7981 gagaatgtac gagacgcact gaaagggcta agtattaaat tagatttagg ataatcttct
     8041 taccaatttt ttctgagaac gacaagcaat caaaaagtat tatttttgca aataagatat
     8101 taatagggaa agttaacaat cctagcaacg gattgttaac tgattttcgg ctggtactaa
     8161 taaaatagga atattaacgt ttaccaaaca tactgcctaa gccaccgaga ccgcctagac
     8221 caccacccat cataccttta acaccacgca tcatttttgc cattccgcct ttacgcattt
     8281 ttttcatcat acgttgcata tcatcaaact gcttgagcag cttatttaca tcttgcacct
     8341 gtgtgccgga gccaagtgcg atacggcggc ggcgtgagcc tttaataata tccggatttg
     8401 cccgctcttt taaggtcata gaattgatga tggcttccat tttcatgaac attttatcat
     8461 caacctgact tttaacgtgg tcaggcaggt ttttcgcccc cggtagttta tcgagcatcg
     8521 acatcattcc acccattttt ttcatttcga taagctgctc acggaaatct tccaaggtaa
     8581 attcatcgcc ttttttgaat ttggcggcaa ttttttccgc tttttcttga tcaaccgagc
     8641 gttgaatatc ttcaattaaa gacattacat cgcccatacc taaaatgcgg gaagccacac
     8701 ggtcagggtg gaacggctca agggcatcag ttttttcacc cacacctaag aatttaatcg
     8761 gtttaccggt gatttggcga atagaaagtg ccgcaccgcc tcgggcatcg ccatcgactt
     8821 tggtaagaat aacaccggta agcggcaacg cttcgttaaa ggcttttgcg gtgttggcgg
     8881 cgtcttgacc ggtcatcgca tcaaccgtaa atagcgtttc aatcggattc agcacagcgt
     8941 ggatttgttg gatctcttcc atcatttcgc catcaacgtg taaacgaccg gcagtatcca
     9001 caatcaatac atcaaagaaa ttaagcttag cgtgcttcaa tgccgcttct gcaatcgcta
     9061 ccggtttttg gctggtttcg gtcgggaaga agtccacttt taacgcttca gcaagggtct
     9121 gtagctgctt gatagcggca gggcggtaaa catcggcaga aactaccaac acctttttct
     9181 tgtggcgttc tttcaggaat tttgccaatt tgccgacaga ggtggtttta cccgcacctt
     9241 gcaaacctgc cattaaaatt accgcaggcg gttgggccgc aagattcagc tcctcgttgg
     9301 cttctcccat tgccgtttct aattcgcttt gtacgatttt taagaactct tgccccggcg
     9361 tgaggctttt gtttacctca acccctaacg cacgctcttt gaccttgttg atgaaatcac
     9421 gcacaacagg gagggcaaca tccgcctcca acaatgccat acgaacttca cgcagggtat
     9481 ctttaatatt atcttccgtt aggcgacctt tgcccgtaat gttacgcagc gttttagaca
     9541 gtctgtcaga gaggttttca aacatatcag ctttctcaat ttgcaaaatt ttaggaaaaa
     9601 agtaccgctt gtgagcggaa agttgccgcc attatacaaa aaaaagcgtt acggttatag
     9661 ggaaataaaa aaacggcata gcgattaaac tatgccgtaa aatttgacga tattcgagga
     9721 atcattattt agttatattg tgcgatcata atactccgaa ttgcgtataa aagtgaagtg
     9781 atattttcaa atttatgtta gaaatgagag gtaaattaca aaattaaagg ggatattatt
     9841 gtttgaaaaa ataagagcga aaagaaaacc ctgatgattg ctcatcaggg cttc
//
LOCUS       DANMGB010000090         9869 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.090, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000090 DANMGB010000000
VERSION     DANMGB010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9869
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.090"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(221..715)
                     /locus_tag="PXG19_001621"
     CDS             complement(221..715)
                     /locus_tag="PXG19_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6066907.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(715..987)
                     /locus_tag="PXG19_001622"
     CDS             complement(715..987)
                     /locus_tag="PXG19_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL6066908.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1146..1574)
                     /locus_tag="PXG19_001623"
     CDS             complement(1146..1574)
                     /locus_tag="PXG19_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066909.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1595..3601)
                     /locus_tag="PXG19_001624"
     CDS             complement(1595..3601)
                     /locus_tag="PXG19_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6066910.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3616..4557)
                     /locus_tag="PXG19_001625"
     CDS             complement(3616..4557)
                     /locus_tag="PXG19_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066911.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4554..4997)
                     /locus_tag="PXG19_001626"
     CDS             complement(4554..4997)
                     /locus_tag="PXG19_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL6066912.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5372..5725
                     /locus_tag="PXG19_001627"
     CDS             5372..5725
                     /locus_tag="PXG19_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066913.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5797..6042
                     /locus_tag="PXG19_001628"
     CDS             5797..6042
                     /locus_tag="PXG19_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6066914.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6051..6293
                     /locus_tag="PXG19_001629"
     CDS             6051..6293
                     /locus_tag="PXG19_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066915.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6557..7399
                     /locus_tag="PXG19_001630"
     CDS             6557..7399
                     /locus_tag="PXG19_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066916.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7514..7927
                     /locus_tag="PXG19_001631"
     CDS             7514..7927
                     /locus_tag="PXG19_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6066917.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            7941..8096
                     /locus_tag="PXG19_001632"
     CDS             7941..8096
                     /locus_tag="PXG19_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066918.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8176..9159
                     /locus_tag="PXG19_001633"
     CDS             8176..9159
                     /locus_tag="PXG19_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6066919.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
BASE COUNT         2885 a         1987 c         1918 g         3079 t
ORIGIN      
        1 ttgcgttatt ctcatgcata aaatcagcta acagaacaat accaattaag gatataactg
       61 ctccgaatac agcatataac catagcctta gctgataagt tattaggaga aataatataa
      121 tatatgtata tttgagaaaa gtgggatgat tccattcttt aaaagctcga attttcctgc
      181 ctaaccaata accaaaatta tttttcataa tcactctcca ttaagataat ctcaccctat
      241 ctagtggaaa aaataatttc ctagcctcat tttcaaagtc aataaatcca aatttacgat
      301 aaaaattgac cgcactttca tcttttgcct caacaattaa tgcgtaagct gctatatctg
      361 cacgaagtac ccttttaagt gcattaccta atagagcttg ccctaaccct aatcccttta
      421 cacgcttatc tactgctaat cgaccaagta ggacggcagg taccgtagga tatcttggta
      481 atttcctctg taatgtaatt ggtaaatcag ataatgaaag acttgttgaa gccagtgtgt
      541 aatatcctac tactgtctgt tcagaattaa cagctaaaaa acaagaagta atacgtcttt
      601 taatatcttg tgaaacctga gttttgagat attgatttaa taattcagat tcactatcaa
      661 aacaatctcg tttaaattcc ttgctaaatg actctatttt caatcccgaa agcattattc
      721 ccccagaatc tgtgagctta atgccaaggc tttttgcatt gccaaattag gttcaggagg
      781 atcaatcaat gctttagcaa aaagttcttg gtcattcaca gataatcgaa taatatcatt
      841 ttgctcaact gtttttcttg ctgcagatag tgcagctcca acaacaaaat cactaagact
      901 acgcccttca agagaagcgg ctcgttttaa cagcatatga acttcttggc tcattctagc
      961 ttcaaatcgt gcggttgcag ttgccatata ttttctcctt gaattattta gttttaattg
     1021 tacgtattta taccgtacaa atcaagcatg acaataaaaa aatcccttag attttcaaac
     1081 ctaagggatt tacctaccga tctttgtgtt ttttaacgtg ggctggccct agtgccatac
     1141 aggcattata aagtattcat caaatgaaca tcaaacttat aatggctttt tttacgagta
     1201 tcacaatcaa cagagccgat acttggttgt tctttacttt ggctaatcgt tgctcccggc
     1261 tcaataaatt cttttgcatt gccatttggc tgaacaaagc cgaccaaata cttcaatcca
     1321 tcattttcca gctctaatgc atacgttgta aaacctgaac ctctggcgat aattgagccg
     1381 tcattagtga ctgccttttt aatcggattt ttgaaggttg ttttgtcata cgaatattcg
     1441 taatcatttc ctacccgttt aacagtaagc ggttttccct ccgtgctggt acaggaaaat
     1501 attacgtttt tatctgctgc aaatactggg gtcgtgcaga gtgtaagagc agtaattact
     1561 aataatttac gcataaatgt aactccttat aaggttaatt tttaccaaga atataatcag
     1621 cttcctgatt ccggcggcgt gcattgatac cgttattatc aacctggcga tttctgacag
     1681 cagttgccaa agcagtcata tcaccagttt gagctgatcg tctagctgcg tcaagcacac
     1741 tttttgtttt cgctagtgag ccgtaattat atgcataaga caccaaaaca gcctgagcgt
     1801 tcgccggtaa tgcattccaa tgtgaatcac ctaactcttg tctcacattg ttcgcaaaga
     1861 tagcagttct gcgagctaaa tcacgttcag catcttcttt ggtaatcaca gtatccttgg
     1921 tcactttaac tacggtaccg tctgcccgtg taatcgtatc ggaaccatat cctacacgat
     1981 gggcattcac atcccattga gccttggaga taaagccttc aaaattacgc agtaaccctg
     2041 ttgcctgatc catcgttgaa ccgctgattt gtgcaagtga tgggaaattt ccgcctacac
     2101 ctgaaccacc tctatttggt agagtcggga tgagagctgc tacattcgga atatttggga
     2161 tactcaatgc aatatttcta cgagagaggt taatattaga gcctgtctct aaatcagtta
     2221 atgcaacatt accgttttca agtccttgaa cacgcttatc cagactatct tgggataaac
     2281 tatgagcacc agcaagagct tcccgttcgg atttactttg cagaatcacc gaagccgtat
     2341 tgccggtgat cattttttgc atatccattt ccagttttac ttgggaaatt tcacggtcaa
     2401 taatattgag tactctttcc agttctactt gagcatccgc attttgagca acattcggct
     2461 ctcgcatacc agctaggatt gctcggcgag ccagtagcat tttttccatt actttactgg
     2521 tcgcaatttc agcggataaa cgttggctga gaagttcaac atctggatca tcacggaggc
     2581 tttcaatcaa gccacgagtg acaggtacac tacttgagct taattcagct aatagctcgg
     2641 atttcggcac atccatattc agtacatttt ctaatttaac aattgtacga atatgttctt
     2701 cttcaatttc cggacttaaa ccaacaccgg ctttcgaact ggttttagta ccacaatcct
     2761 ccttacaggt tgaaattgat tgctcaccaa taatcttagt taagaagtcg gcagcagctt
     2821 gaggtgtatc ccaagtctga caaagattac cttcacaatt tgaaaccggg ctgctatcta
     2881 agacattccg cttattgagt aaattaaatc cgcctttcgc tacatcacca acgacattaa
     2941 ttggatcttg gttttgccca cctttacgtt gcccaccaac ccaaactctc ccatctttcc
     3001 cttttttatc ttctaggtct ttttgggctt gcttcgcatc aggttgtgtc gaggtaattt
     3061 gcttatagct ctctaaatct gctgcttgcc cccattttcc tcctagtgtg tgatctgcca
     3121 gaactttaga catttcctca caggaagttt ttagacggtt gaaatccagc ttaccttggt
     3181 acataccatt tgtcagcaaa tcgtagagtt gagggttggc ccgttgcaat atcattgcag
     3241 gcatactggc aaccgcacct ttagctgaat caatgacatt ccccattaaa tctttaaagc
     3301 catctttaag gccgtttaaa tcatttttaa tagttgtttt aatgtcaaaa ttgccacagg
     3361 ttaaattcgc tttccaaccg atgcctaaat caacgacttt ggtattacca cgactaggtg
     3421 gagccatata acctgttcct ccgccgattt ggtaaaagac acgatctgaa ataatcgaat
     3481 ccgacttact aaattccagt ttatcagtga ttgagtcagc aaaagagata gaggaagtac
     3541 tggaaaaaag tactgttatt actaatagat gtgttttctt gaatttaaat tgtgatttca
     3601 ttgcaagacc tcgttttagt gtgaccaatc aatactgtaa aggaatgttt gccctcggcg
     3661 tttacaacaa ctataaggtc gccatagtgc ccaagcataa tcaccttgat ttgaaatctg
     3721 agaggaatag gtgtctgttt gccccccatt tggaaaaaca gagcaggtat ttgacatttg
     3781 aggataaagc atttgccatt tatgtgttct ggcttgtcct tcttcgacag gtcctggtgg
     3841 ccattctcca acaccacctt ttttcgctgc cgggaaataa atatgtggtt gagcagttcg
     3901 ggtcacgatg tctgcaactc tctgcacaat ggttgcagag gctttataat cgtgagcttg
     3961 tgttacccaa ccggaacgtg ggtaaatatt tccccagcta tcgcctacac ggccaacttc
     4021 ccgcattccc ggaatcagag cttccggata aaacatttcc ggcatatttt cacgccaagc
     4081 aaagaaatct aatccactta gaaaataggg tataaatggt gtggtttgac ttttacaata
     4141 gtagcctgta cttcctaata actgaccaat tgctccttgg ggatgcccga aagcatctgc
     4201 atttttgaag gttagttgag agtattgacg ttgcggagaa cgatattctc cgccttttac
     4261 gccaggattg agagattgta attctgtcca cggagtttgc ccatcctggt tataagatga
     4321 aacgaccatt tccggtaaat aatgcttaat tttggttgat gtacgaacct tgcatccaaa
     4381 gtaggtgcaa aataaccaga agcacgttcc gacgacttta tagtctaaac agcttgttga
     4441 ggcacttgat gcagcaatcg acgccgtatt caatgatgct tttacctgtt gaggatataa
     4501 ggttgttggt actgctaaac ttacagagag aagtaccgaa aaaaacgctc ttttcatttt
     4561 gattcaccgt gttgttgaac ccatttatgc cattcatcta gtgctttttg tatatcagtc
     4621 ataccataaa tcacgctcgg agaggattgc agattattaa aaaacaccgc aggcactttt
     4681 ttaattccat tttgccatcc actgatcacc ccttgataag catcttttaa ttgctcttct
     4741 tgggctttcc aatctgctga attaaagaat gctcgtattt ctcgttcggc aatctcgggg
     4801 gatttactga gatttcgact gatttcctct tcaaaattct ctacttgatc aagataataa
     4861 acttgggagg caagttgtga attttgaatg gggtacatct ttgttgtata gacaatgata
     4921 ttcggctgtg cttgtgccac tacagaaaac actactgtta ctatgctgaa atatcctaga
     4981 aatctacttg ctttcatcac tctctttccg aataaataag cagaaaatta gcgagatttt
     5041 tacatagagg ataggaaaaa ctcttttcaa aaaagagata tttttttgag caaaaaatgg
     5101 ttgattttat aaatggattt cgtatgatat ggaatattaa gatgctgtgg aaacagccct
     5161 taaaagtcgc ataactcttg agaagcggcg gctatccatc gaggtagttg agttatttac
     5221 ccaaaatgtc tcccagcatt ctgaaaggga acgctgcaaa tttgcaggaa tgccacctaa
     5281 acacctacct tccgagggat atttcaattc ccttggaatt gcgatctcct gaggaatttt
     5341 atttatttaa ctttttatag gagaactcgc tatgagtcaa caaaccgcag gatgggatgt
     5401 gatcccattt gaatcgtcaa aaaccgcaaa accttctctt ttttggaaac ttggcaataa
     5461 gctcggtaat attttcgttt cggcgaaaca taaagctaaa agcaaatatg tcgaggtaac
     5521 caaaggcatc aatcaacgaa ttgctgaaga agatgaaatg cgagccttag aattgcaaat
     5581 gtgcttagat gagcaagcag ctgaatatga gcaggaaatt tctcgcatta agcgtaagat
     5641 gtttttcagg gctttattcg ttgcgattat tgccttttta tgtggtatgg ctaccgtttt
     5701 tggtactcag ctctctttaa tctaatttaa ctcacccatc ggggaaatgc tatttccctt
     5761 gtggtaatac atttcccctt aattttggag aaatgtatgt cagttcatat caaactctcc
     5821 tgtgttggag atattttgcc aatcaaactc aatgaatgga caccggaaca tcgagcctta
     5881 catcacgaaa ttagccataa agctctcgaa gcctggcaaa atcgagataa aggcactcaa
     5941 agcgtgcgat ttatgcaaca aatgccagcc cgacaaggac tgcatttccg ctttctgagt
     6001 gtatcggagc aagacggcaa gctcattgtc agtcgttcat agttggttca atgtttggta
     6061 agctttttta caaaatgaat cccaaagtac tagctaaaat cggagaagat tttagaaaag
     6121 ctggttatct tatgggagct ggttttgtcg gaatggtaat ttccaatgat cagatttcca
     6181 catcggaagg atttgttctt tttttgtggg gattgtatat ttggattatc gggcatatcg
     6241 cactacatca ttctgagaaa atacttaatt caaagcaagg agaaccgaaa tgagtccgta
     6301 ctttttaggt gctgctattg gaacagcgtt attggcaaca atttttattg ttctagtaac
     6361 ttgggcaaat cgagatattt tgtttacaaa atcagataag ccacagtcta aatagcaaaa
     6421 ctccattcta acccataggg gaacaagttc cccgaggagc ttgttctccg ttttaccttc
     6481 cttttaccct atcgggaaat actttcccga attgggctta agtgtttccc attatttttt
     6541 attttggaga aacattatgt cagattcagt attaaacact tattttaaac acgctcttgt
     6601 caaagctggt tttccggata ccttagatat ggagtattca ctcagccatt gtcaaggaga
     6661 tggagtcgca ttttatggtc ggcttggtac agatgatcta atccagcttt tcaatcatct
     6721 caatccacag aaacgtaaac agaaaatgtt tgctaatttg ctaacgcaca ttgaatcttg
     6781 ggaaacccac gatgatattg gttttgaaat tatacgaaat cgctttgggt atcgttactc
     6841 gcattggaat acgatggagc tttatgctaa aactgcagat cagttagtgt ttttcaatga
     6901 tagtgatgct cgaagaaact ggtattttcc tacttcaaaa gtggataaat acaaagcatt
     6961 gtgggacgga tttatcgaag atttggagca gtacatcaaa gatatttccc gtgaaatgga
     7021 atcggtcggt tatcaaatta ttgaagcctc gccgtatcaa acggaaaccg ttttcaaatt
     7081 taatacggaa aaatatctag tagaactgca acgtaaacct tctgagtttt attcagagct
     7141 tgttgattgg gcatttggtg atatgtgtga ttttgaagca gctatagagc agatttgtca
     7201 agggcaactc tgttatgctg attttgaagc aactgttacc gataagaaaa gtgaaattca
     7261 gttaggtctt gctcgcttga gtggaataag ttactcgccg aatgaccgtt cgtttagtgg
     7321 ttatcgacaa gagcttattg gtgaggcgat tgcctctgct cgccataatg cagcacgttt
     7381 tgcctacttg cacgcctaat ttgcagattt ttactttaat ttgaccgctt gtagtggtta
     7441 attttcaccc cgtggggaaa tattttccct attgggcaaa atgtttctcc actttttaat
     7501 ttggagaaat gttatgaaaa atgaacacaa tttagagcaa cttaaatata tttgggataa
     7561 ccgcaacctt gaaaataaag tctatcaata tctgtttcac atctgcattg agccgatgaa
     7621 aaaaggagat tggaatcgtt atacgatttg gcttaatttt cacggtaact taatcaacgt
     7681 gtcagacgtt gtatatcgag ttgtggaatc tcaaaagctc aaagatgaca tcaaaatttg
     7741 gtatgacaag caatactatt gccgtccaac caaagttgaa acaacaggtt ttatttccat
     7801 ttttctgcac ctgttttatg agggcatagc tcgtattttg ctggaacagg gaatgattac
     7861 tgaaactgaa gcagccgaga aaagttacaa cttcagagct gcaaattgtt ttcaacgttt
     7921 gctttaatgg aggtgagata atggaacctc gcactgttaa agttatttac gatgatggcg
     7981 attatttctt taccctaatc aatgccgatg aacagactat tcgtaattac tacgctatag
     8041 gcagttcaat cggttttgat aacacaagga aaattgtcgc tgttgaaatt ttataaacta
     8101 cccatcgggg aaacgacttc cccatagggc gatagtgttt ccccattttt ctacccgaac
     8161 tttggagaaa cacttatgaa ccctcaatca aacacacagc ctaaatttga tttatatcaa
     8221 gaagtgaccg ataaaatcat cgccgcttta gagcaaggaa cggctccttg gcttaaacct
     8281 tgggatagcg ttattcctta tggtggtatg ccgtgtaatg ccatatccgg aagattgtat
     8341 tccggaatca atgttttgtt actttggttg tctgccgcag aacacggcta tatccaacgc
     8401 aagtggatca ctgcaaaagc agctattgaa gccggtggac acgttcggaa aggtgaaaaa
     8461 gcaacccttg cggtcagcta tcgcccgtat gatcgagaaa aaaccgatga tgatggcaac
     8521 cttgtcctcg atgacgatgg taacccggta atcgaacatc tcgcttcgat taaaaagcac
     8581 tgcctattca atattgaaca gtgcgaaaaa ctgccacagg actggtatga aacggttgaa
     8641 accccagaac agctgactga cgaaaatcag tatgctattt ttgaggagat tcgtttgatg
     8701 ttgaaaggta tggatttgca agtgatggta aaaccaagca atcaagctta ctaccaccca
     8761 cgcaatgacc atatcgtgat gccggaaatg aagcagtttc attcaccaca aaaattccat
     8821 agcgtgctgc tacatgaaat gactcacgca acagggcatc aatctcgcct tgctcgtgat
     8881 ggtattgttt ccggaaaagc tcgctttggc aataaagttt atgcttttga agaattggtc
     8941 gctgaaatgg gctgtgcatt cttgtgttct cacctaggct ttgctgacgt gccacaaaat
     9001 gccagctaca ttgaaagttg gatcaaggtg ttaagagagg ataaacgggc aattttcagg
     9061 gcttcaggga aagctcggga agcctgtcaa tatatgctgg atgccttaaa catcgcacag
     9121 ctggctgata aatacgaagt atttgaagaa gccgcttaat aaatttgccg aaaggcattt
     9181 cccgtgggga gatactctcc cttcggggca ttgtgtctcc ctttttattc acttaacgag
     9241 aggactcaat gctcaatcta aacttattta aacgacccat tgaaatttcg acacttgaat
     9301 cttggtcaaa attctgtgat gatgttggta aagtagcttt tgttgcagta cctgctatgc
     9361 tgtatagtaa ttacgagttt tggattaaga taagcagtat aattggtcta tttatagcta
     9421 cctatttctg tttagttatc ggtagaaata tacgccaatt tattgagaag gagaaatcaa
     9481 aatgggatta atgatcggca tttggattat tgcttttatt gcatttgggt tggccatatg
     9541 gacaagccat attctaaaaa agcaagatga acgccttaaa cagctaaaaa atagctaact
     9601 ttcaaaatac ggcacatttt gtgccgtatt tcttttgtac tggtggcaaa tataagatta
     9661 ctatcatcag tatattgtaa tatctcaact caacagcatt agtcaaaaat cctccaacat
     9721 attcagagag tttttcctac tgagttctct tattttttgg ttcaatactc tccctttata
     9781 aattaaattt ggttcagata aaagccgctc aatggcaaaa ggataaagga gcccttacgg
     9841 gcaagggtaa tcccctaagg gggaataag
//
LOCUS       DANMGB010000091         9378 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.091, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000091 DANMGB010000000
VERSION     DANMGB010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9378
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.091"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..213
                     /locus_tag="PXG19_001634"
     CDS             <1..213
                     /locus_tag="PXG19_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL6066920.1"
                     /translation="FPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELATH
                     EEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(272..1429)
                     /locus_tag="PXG19_001635"
     CDS             complement(272..1429)
                     /locus_tag="PXG19_001635"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL6066921.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(1551..3617)
                     /gene="prlC"
                     /locus_tag="PXG19_001636"
     CDS             complement(1551..3617)
                     /gene="prlC"
                     /locus_tag="PXG19_001636"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL6066922.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(3748..4488)
                     /gene="pflA"
                     /locus_tag="PXG19_001637"
     CDS             complement(3748..4488)
                     /gene="pflA"
                     /locus_tag="PXG19_001637"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL6066923.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(4737..5762)
                     /locus_tag="PXG19_001638"
     CDS             complement(4737..5762)
                     /locus_tag="PXG19_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6066924.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(5997..8321)
                     /gene="pflB"
                     /locus_tag="PXG19_001639"
     CDS             complement(5997..8321)
                     /gene="pflB"
                     /locus_tag="PXG19_001639"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL6066925.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(8411..9235)
                     /gene="focA"
                     /locus_tag="PXG19_001640"
     CDS             complement(8411..9235)
                     /gene="focA"
                     /locus_tag="PXG19_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL6066926.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
BASE COUNT         2643 a         2114 c         1843 g         2778 t
ORIGIN      
        1 tttccagaat ttcgtgatct cataacccaa ttaaagcaaa acaattcaca ttttgctcgc
       61 ttatttgata aacataatga gctagaccag cgtattaaga atatggaggc aaatattgaa
      121 ctggcaacac atgaagaagt tgaggcacta aaaaaagaaa aattgcattt aaaagaccaa
      181 ctttatgcaa ttctaaaaca agaatcggct taacctaaag taaaagctca gaaaatattc
      241 tgagctttaa tttcggtcat attagacaat attacagttt taccggctca ataatttcgc
      301 ttgggtagca acccaacact ttgaggtagc tggtaacttg ctccaattcc gccaatgctt
      361 tttgggtgtt ctcggaatga atatttgcct ccagctccac ataaaacatc tcttcccaag
      421 gtttgccgta aatcgggcgg gattccagtt tcatcatacg aatatgatga tttttgaata
      481 ccattaacgc atcgaccaat gcacccgcct gttgcgtggt ggtcattaac agtaacgttt
      541 tggtttgtac ctgtggcgaa acctgcacag cctctttggc aacaacaata aaacgggtga
      601 tattgtgagc ttgattagca atatcggttt tgatattcgt caagccatac aattttccgc
      661 catcttcatt gcccaaggca acaatattcg gcttattcaa gcgagccacc atttgcattg
      721 cgtgcgagct gctttcgcaa tatttgatat gtactttatc tagcccggct aaaaattggc
      781 tacattgctg ggcaggctga gggtgggtgt aaatggtatc cacctccgcc aaatcaaccg
      841 tgccgtttgc caatacacaa tgtttgattg ggtacgccaa ttcacccact aaggttaaat
      901 cggtatgctg caataaatca tacacttcat tgatcgaacc tgaagtcgtg ttttcaagcg
      961 gcagtacgcc aaaatcggct tcaccaaggc tgactttctc aaatacttca ttaaaagaat
     1021 ggcagcttaa ttccgccaat gtgccttgat attttttggc aaactgtcga gatgccatat
     1081 tagaataaga gcctcgcatt cccaaaaacg caatcgaaac ctgctcttct ttttgtgcat
     1141 tcaatttatt ttgcagataa ttttgctgag tcagcactga atcttcaata atacgttgga
     1201 aaatttgggt cacatattgc ggatcaagct ggtaattctc cgcttcggca aaatttacca
     1261 gttcttgaag caaaatcttt tcccgttcta aatctctcaa gggtttttgt gtgatttctt
     1321 tgctccgcac cacatcaaag gctaagcggt ggcgttctgc cagtagcttt aataaattgc
     1381 ggtctaagtt ggttatttgg gttcgaatat cggctaaatc taaagacatt atttcactct
     1441 ctgtcaggct aaatgctgaa aattataacg agttgcaaaa gaaagaaaag acaagcggtc
     1501 aaatttacaa aaaaatttgc aaatctaacc gcttgtaaaa cgtgtttact ttattgagtg
     1561 caatcaacag gctcggcatt acctacaatg cctttgtgtc tgagcaaggc atcaagggtt
     1621 ggcttacgcc cacggaagcg ttcgaacagc accattggct cttctgaacc gcctcgggtt
     1681 aagatattat ctaagaaaga ctgccccgtt tcagggttga aaatcccctc ttcctcaaag
     1741 cgtgaatagg catctgctga aagcacttcc gcccataaat aactgtagta gcccgccgca
     1801 tagccgcctg caaaaatatg cgagaaactg tgtggcgttc tcgcccactc tacgcctttg
     1861 gcaacagcga cttggtcttt cacctcttta agtaaggcta acacttgtcc ttgtttgctc
     1921 gggtcatatt cggtgtgtag gcggaaatca aacaagccaa attctaattg gcgaagcaca
     1981 aacattgccg cttggaagtt tttcgccgcc aataattgct ctaatttcgc ttttggtaac
     2041 ggctcgccgg tttcataatg ccctgaaata aaggctaatg cctcttcttc ccagcaccag
     2101 ttctctaaga attggcttgg cagctccact gcgtcccacg gcacaccgtt aatgccggcg
     2161 acatcgccca cgtcaatttc agttagcata tggtgaatgc cgtgtccaaa ctcgtggaac
     2221 aaagttgtca cttcatcgtg ggtaaacaat gccggtttat cgccaatcgg tttattgaag
     2281 ttacaggtta aatatgccac cggtttttgt aatgtgccgt cagccaagcg tttttggttg
     2341 atgcaatcat ccatccacgc cccaccacgt ttgttttcac gagcgtataa atctaagtag
     2401 aacgagccac gcaagcggtc atttttatca aaaatattga aaaaacgtac atctttgtgc
     2461 catacatcca catctttttg ttcttccaca cgcataccga aaatgcgttt aattacttca
     2521 aataagcctg ataatacgcg attttccggg aaatacgggc gaagttcttc atcattgacc
     2581 gaatacaatg cctgtttttg tttttcgctg tagaacggaa tatcccataa atccaaatgt
     2641 tcaatgccga aatgggcttt agcaaatttt ttcaaatcgc ataattcatt tttgccttga
     2701 gctttcgagc gagcggctaa atcgttcaag aaatctaata cctgttgtgg attttctgcc
     2761 attttggtgg ctaatgaata atcagaataa gtcttaaagc cgagaagttg ggctttttcg
     2821 tgacgcagtt ttaagatctc atcaatcacc gcactgttat cccatttgcc tgcattcggg
     2881 ccttgatcag aagcacgagt cacataagca cggtacattt cctcacgcag tgctttgttt
     2941 tcacaatacg tcatcaccgg caaatagctt gggatttcaa gagtgaagcg atagcctttc
     3001 ttacctttgc tttctgcgga taattttgcc gcttctaatg ccgattccgg caagccttta
     3061 agctgtgctt catcggtaat tacaatatcc caacccattg ttgcatcaag tacgttgttg
     3121 ctaaattgcg agttgagttc cgacaagcgt gcagaaattt ccccgtagcg tttttgtttc
     3181 tctgccggca gtgaaatgcc tgataattca aaatcttgta agctgttttc aatcgccttt
     3241 ttctgtgcaa ccgaataagt ttcaaactca gggctgtttt ttaacttcac atagccttga
     3301 tataaccctt gatgttgccc cgcccaagtg ctgtattccg ataataacgg caagcacgct
     3361 tggtaagcct cacgcaactc tggggaattt ttcaccgcat tcaaatgccc taccggtgac
     3421 cacgcacggg agaatttatc ctctgccatt gcttgtggca tatagaaatt ttcccacgtc
     3481 gggttttcaa tttgtgcgac tttttcaaca gtttcacggc attctttgat caccgcttct
     3541 accgccggtt tgatatgttc aggtttgatt tgtgagaacg caggcaagcc tgtgtaattt
     3601 aaaagagggt tagacattat tttttccttt tatggtcaaa atgaaaattc gtatcaagat
     3661 aatacacaaa gtgagagaga aaagaaaaca agcggtcata tttcaataat tttttgcaaa
     3721 aaaatcacaa aatatgaccg cttgtcttta gaatttgact gtatgcccgt aactttcaat
     3781 gattttttgg atacgctcta aatcctcttt aggcggtgac attacccctt ccagctcata
     3841 tttatagcct aaggtttccc atttgtgagc ccctaaacga tgataaggca gaagttccac
     3901 tttctcaatg ttatccattc cttgaataaa ctgccctaaa cgatgggcag aatcatcgtc
     3961 atcagtataa cccggcacga ccacatagcg aacccaagtc ggtttattta atttgtgcag
     4021 ataacgggcg aaatcaaggg tacgcttatt cgacaccccg actaaatctt ggtgaacttc
     4081 atcattgagc tgttttaaat ccagcaagac caaatcggtc acttcaagca tttcatccac
     4141 caccgggcta taatggcgaa caaaaccatt ggtatctaag caggtattaa tgccttcagc
     4201 cttacaggca cgaaaccaat cccgcacaaa ctccatttgc aacaccgctt ccccacccga
     4261 agctgttaca ccaccgccgg ttgctttcat aaaatgctta taagtcgtga cttctttcat
     4321 cagctcttca accgtaattt ccttaccacc atcaagatcc caagtatcac gattatggca
     4381 atatttacac cgcatcaaac agccttgcaa gaacagaata aaacgaatcc ccggtccatc
     4441 taccgtaccg caggattcaa aagaatggat acgtccaaca acagacattt gtcacctcaa
     4501 ccctcaaaaa attttgagaa attgtagcaa atttttatgt tgttcgcaga aataaatcac
     4561 accggtatat tttaagaaag gagaaagtca tactattttt tgcctatttc aggaataaac
     4621 ttttattaat ctattgactc catcaacata tcaaccaaat atgtttaaat ttttgcattt
     4681 tttaaagcta ttttgaccgc ttacaagcag tcggtttttc tgaaaacttt gcaaacctag
     4741 ccggcgtggt atttggcggc gacctctttt accagtaagt cgaaatcgct ttcgtaggtg
     4801 agatcctgct tgactcggta tttttcaaat tcgctgaggg cgaaagattt agcaatttca
     4861 gcggtaactt tgccggcatc ttgtaagatt tctcggtcgg tggcggcaag aaagcggtta
     4921 aggcgggttt cccagtctgc cattgtcatc ggaatttggc gttctgccat atcttccgcc
     4981 atatccaaat aggcagagac cagccgttgt agttgtgcta attcattatc cgataaataa
     5041 tttttggcaa ccaccacatc aaaggggtaa attttgcctt gcggagcgtc tttccaattc
     5101 gttagcccca tattcggctt ttcagcgttg gctcgtgcca taatcagctc ggcggcggta
     5161 tgcccgtgaa ttgcccaatg gagcttgttc tgcacggtgg caaaaaagcg tttggtggcg
     5221 gttgcggtgc ggtcgtagtc cacggcggta gcgtaaatgt cggtgatttt ttggtagaac
     5281 ttgcgttcgg ataaccgaat ttcccgaata cgagcaagct gttcttcaaa gtattttttg
     5341 cccaaaatcg tgccgtcatt tttcagccgt tcatcgtcca tcgcaaagcc tttaatcgca
     5401 aagctatgca cgatttcggt tgcccatttg cgaaactgca ccgctcgctc ggaattgact
     5461 ttataaccca ccgcaataat tgccgacaga ttataatgct tggtgtggta gtttttgccg
     5521 tcttgggcag ttatccaaaa aaattggata actgaatttt cagctaactc attgtcacta
     5581 aagatttttt tgagatgata gctaatggtt cgtacatcaa catcatacaa caccgccatc
     5641 attttttggc taagccatac attttcatcg gcgtaaacgg catcaacttg gctttcgccg
     5701 gtagctgtaa taaaagtgag gtattccgcc acagaggaac gaattaaatc ttgcttagac
     5761 atctctttct cccatataga acactgtaat tataaacaat attacgaaag ctgtgtaaat
     5821 gaatagccaa tttttcgagc gagatcacaa aaaaaccgct tgcggcataa atgctacaag
     5881 cggttgatta ttactcacaa aattgtttcc aattttgttc gctcctacgg agccgtcggc
     5941 aaagccaacg ttcaaaacgc aatgcgtttt gtggctaaaa gttttgcaaa ttgtaattac
     6001 atactttcag tgaaggtgcg ggtaattacg tccatttgtt gctctttggt taaagagttg
     6061 aaacgtaccg catagcctga aacacgaatc gttaattgcg gatatttttc agggtgttct
     6121 accgcatcta ataatgtatc acggtttaac acgttcacat ttaagtgctg accgccttct
     6181 acagttgctt cgtggtggaa gtagccgtcc attaagcctg caaggttacg tttttgggct
     6241 tcgtaatctt tacctaacgc atttggtacg atagagaaag tataagaaat accatctttc
     6301 gcataggcaa acggtaattt cgccacagaa gttaatgaag ctaccgcacc tttctggtca
     6361 cgaccgtgca ttgggttcgc acccggtccg aatggagcac ctgagcgacg accgtccggt
     6421 gtattaccgg ttttcttacc atataccacg ttagaagtga tagtaagcac agactgagtc
     6481 ggcgttgcat tgcggtatgt tttgagtttt tgaattttct tcataaaacg ttcaactaaa
     6541 tcaactgcaa tgtcgtccac acggttatcg ttgttaccga attgcggata ttcaccctca
     6601 atttcaaagt cggttgctac gtttttcgct acaccaacca cttcgccagc tttgtttttg
     6661 atttcaatat cggtacggat tggttttact ttcgcatatt taatggctga aagtgagtct
     6721 gccgctactg aaagccctgc gataccacac gccattgtgc ggaacacatc acggtcgtga
     6781 agagccatta atgccgcttc gtatgcatat ttatcgtgca taaagtggat aatgttcagt
     6841 gctgtcacat attgggttgc aagccaatcc ataaagctgt ctaagcgggt cattacatca
     6901 tcgtaatcta agtattcact tgtaattgct tcagttttag gccctacttg gtcgcctgat
     6961 ttctcatcaa caccgccatt gattgcgtat aacaaggttt tcgctaagtt tgcacgagcg
     7021 ccgaagaact gcatcatttt acccacgatc attggcgata cgcagcacgc aatcgcatag
     7081 tcatcgtttt ggaaatccgg acgcattaag tcatcgtttt catattgaac tgatgaagta
     7141 tcaatagaca ctttcgcaca gtagcgttta aatgcttccg gtaattgttc agaccaaaga
     7201 atagttaagt ttggctccgg tgacggcccc attgtgtaaa gggtgtgtaa aatacggaag
     7261 ctgtttttgg ttactaaggt acgaccgtct aaacccatac cggctaaggt ttcggttgcc
     7321 cacattgggt cgcctgagaa taattgatcg tattccggag tacgcaagaa acgcaccata
     7381 cgcaatttca ttactaaatg gtcgattaac tcttgggctt cttgctcggt aattttgccg
     7441 gcttttaagt cacgttcgat ataaatatct aagaatgaag acacacgacc gaaagacatc
     7501 gccgcaccgt tttgcgattt aaccgctgca aggtaagcga aatatgtcca ttgcaccgct
     7561 tcttgtgcat tggttgcagg acctgaaata tcaaaaccgt agcttgcagc catctctttc
     7621 attttgccta aagcacggtg ttgctcggca atttcttcac gcagttgaat cgtggcttga
     7681 atatcttcgc cggattctaa acgagcttgt aatgaggcaa actggcgttg tttgtctttc
     7741 attaagaagt ctgcaccata aagtgccata cggcggtagt caccgataat acgaccacga
     7801 ccataagcat ccggcaaacc ggtaattaca cctgatttac ggcaacgtaa aatatccgga
     7861 gtgtaaacat cgaatacccc ttggttatgg gttttacggt attcggtaaa gatttgttct
     7921 acttcaggtt taagctcacg gcgataaact ttgcacgaac ctttcaccat attgatacca
     7981 ccaaacggca taatcgcacg ttttaatgga gcatctgttt gcagaccaac gattttttct
     8041 aacgatttat caatataacc cggtgcgtgt gaggtaatgg ttgatggcgt gtcgcagtca
     8101 atatcatacg gttcgtgtgt tttgttttct actttgatca tttccatcac atctgcccac
     8161 aatttgctgg ttgcaggtgt tacttcagct aggaaagact catcaccctc ataaggtgtg
     8221 tagttttttt ggataaaatc acgtacattt acttcagttt gccactcgcc tgcggcaaaa
     8281 ccttcccacg ctttttgttg agcgtctgtt agttgagtca ttttaagtcc tctgtgttag
     8341 taagttaaaa cgggaaagcg gtgatttttt gcaaaaaatt tgcaaaattt gaccgcttga
     8401 atctgaaatc ttaatgcttt ctaatgtata agaaccactg cattaaacca atgaaaaaca
     8461 cgccaccgac aatattaccc agcgttgccg gaattaagtt cttaaacaca aaatgagata
     8521 catctaaatc ggcaaattgc gttgggtcaa cattaattgc tgtccaaaat tcagggctgg
     8581 caaagtgcga aatcgcaatc cccatcggaa tcataaacat atttgccaca cagtgttcaa
     8641 agccggaagc cacaaacatt gcaatcggta acatcataat aaaggcttta tcggttaggc
     8701 ttttacctgc ataagacatc cacaccgcaa tgcacaccat aatgttacag aaaatgccta
     8761 aacagaaagc ctcaaaccat tggtggtgaa ttttgtgctg tgcggtattt aaaataacca
     8821 aaccccattg ccctttggct gccataatct gaccactaaa ccaaatcaac aatacaatgg
     8881 aaatcgcccc aacaaagtta ccgaaataca ccactaccca gtttttaaac atctgtaacc
     8941 agttaattct ttggctggct ctggctacaa tcgtaagtgt tgatgaggta aaaagttctg
     9001 ccccaaacac cacacacata atcacgccga gtgaaaatac caaaccacca atcagtttag
     9061 ccatacccca aggcatttgg ctcgcaccca cttgggttgt ggtataaaat acaaatgcta
     9121 ttgcaataaa accgcccgca gtaatggcag agagaaagga atataattga ttttttgttg
     9181 ctttataaac cgcaccatct tctgcgattt ttgccatttc agcaggagaa aacatcagac
     9241 aaccttaaca atgagaattg aaaaaccgat atattatgta gaaattatag acctcttgag
     9301 ataatcttca aataaaaata ttacacaatc agaggtattt cgatgtcttt ttttgatata
     9361 gaacaaaatc cataaaaa
//
LOCUS       DANMGB010000092         9364 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.092, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000092 DANMGB010000000
VERSION     DANMGB010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9364
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.092"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            27..422
                     /locus_tag="PXG19_001641"
     CDS             27..422
                     /locus_tag="PXG19_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6066927.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(632..2791)
                     /locus_tag="PXG19_001642"
     CDS             complement(632..2791)
                     /locus_tag="PXG19_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6066928.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARYEQSKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
     gene            2898..3764
                     /locus_tag="PXG19_001643"
     CDS             2898..3764
                     /locus_tag="PXG19_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6066929.1"
                     /translation="MEYKMRTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGK
                     ADKLVGVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQI
                     KASGIPLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHS
                     TDKEVLVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADV
                     ILLASRNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYA
                     HQILTTIQPCLK"
     gene            3775..4761
                     /locus_tag="PXG19_001644"
     CDS             3775..4761
                     /locus_tag="PXG19_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6066930.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            4761..5567
                     /locus_tag="PXG19_001645"
     CDS             4761..5567
                     /locus_tag="PXG19_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6066931.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(5588..6226)
                     /gene="purN"
                     /locus_tag="PXG19_001646"
     CDS             complement(5588..6226)
                     /gene="purN"
                     /locus_tag="PXG19_001646"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL6066932.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(6333..8490)
                     /locus_tag="PXG19_001647"
                     /pseudo
     CDS             complement(6333..8490)
                     /locus_tag="PXG19_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(8544..9341)
                     /locus_tag="PXG19_001648"
     CDS             complement(8544..9341)
                     /locus_tag="PXG19_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL6066933.1"
                     /translation="MAFFLLGCSVSTQSLNEQNVDSIGQIIDLNTNQTISFTELLSRL
                     SSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVDQQPAIDRIQFNRP
                     VNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKEVEILLNGAEPLKG
                     SVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKLVKNALSTSLLIAG
                     NHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWVTQ"
BASE COUNT         2776 a         1968 c         1728 g         2892 t
ORIGIN      
        1 gataacgctt atttaaagga aaatatatga aaaaattgat gatattcgca acaactgcca
       61 tgattgtaag caatttagcc catgcagcag gtgaacaaag tgatgcaaga gaagcccacg
      121 aaagcaccgt aaaaacctca actgttaagt atagctgcca aaacggcaaa aaattaagcg
      181 tgaaatacgg cttcaataaa caaggcattc caacctatgc tgaggcaaaa ttaagcggta
      241 aaaaacgttt tatgccgatc aacctataca cgacagatgc aaccggcact aactttggtg
      301 acgaaaacaa tttcagcctt tacggtgatc caatggaatt taccaaccac cgtaaagcat
      361 cagtaaatat ccaaagcccc gcaagtgaaa ttttatataa aggttgcaca cctcaaaaat
      421 agataaaaag taaaatgagt ccgctctgat aagtggcttt ttaatagctg tttattgcag
      481 ataggaaagc attttgtttt tatctactat ccagaaacaa gcggttaaat ttgtttaatt
      541 ttttacaaaa aatgggccaa aattaaccgc ttgtttatta ctataaagaa ataagtacgt
      601 aaaaattaac tcttacattt aatgcttatc tctaaaattt aaactccact gatgccatta
      661 catagcgctc tggagcaagg taacgattta agccttcgcc agttatactg ttggcaactc
      721 caggactagt tataccaata gttcttaaac tatcccaagt ccaatatttt ttattaaaga
      781 gattataaac cccaacttta acaatcgctc tttctccaaa ctttttgtgt gcaactaagt
      841 caaatacggt ggctgaatta cttaagtatg ggtaagtggt taatgattta tcgtaactta
      901 aatacccagt attggctaaa atagcatact gttgtgcata ttttgctttt ttgccttgtg
      961 tgtatgtgcc gtttaggtgt atcgcccagt cattgttcac agctcgataa cctatgccga
     1021 acaatgcttt taacggttga accgtgagta agtcggtacc atcattacgt ttgccacgag
     1081 cataaccaaa tccaccatta agctcaaagc cttgtggaat tgcattccac gctgtgttta
     1141 agtctaaagt tccgttaata tcaacacctt tgattttagc tcggttaaca ttttgcgatt
     1201 ggtaaatatt gttaccaata gtggcaagat caatcagatt tctatagtgg gtatggtaag
     1261 cggctacgct caagctacct aatgaaccat tacctaccag tgaaatttca ttacctaagc
     1321 ttgtttccgg ttttaagtta gtatttgcta agaaagtttg gcttgctcca cgcccttgaa
     1381 cttcacggtt aaagaacatt tcacttgcgg taggtgttct aaaaccacgg ctgagtttat
     1441 agccaatttg ccatacagga gagagctgat aatttaaacc aatatctccc gcccaattgt
     1501 taaaggtttt atctgacaaa ctattatcat cagaatgtaa tttcgactgc tcatatcgag
     1561 catttaaatg agcagataga ttttgtgtca gtaaaataga gtctcccatc aaaatatgga
     1621 aagacttggt ttttgccgga gactgcatat tttgatcggt tggcgtaata cctgctgtat
     1681 aggtttgcat atcaaaactg aaatcagata caccatagcc taattccgtt gacaatttat
     1741 gttcggtatt acctagatca acaggcttga atgtaacacc taagctacct tcaacatttt
     1801 tagtattaaa agcccgtttg gtattatctg tttttgtacc acgggcaata gtgatttgat
     1861 cgttaatacc tgaaatttca gtatcctgtt tggttaccgc aactttaata ttttcaagaa
     1921 tactgttttt tggagtgtat aaataagtaa cgccataagt ttcaatttcc tgcacatcca
     1981 aaaaatcacg taatgtgacg gtagaataag aaagctcttg accggcgttt ttactgcgtt
     2041 gcttagaagt ttttaattca aggcgatttt catcattcca ttttagccct aattttgcca
     2101 agtagctgta ttgattattt ttgtaaggat ttggtaaacc acgaccactt cccataatat
     2161 ccggaccttt agacgttgtt tgtgtttcgt gtccttgacg gtggctatac ataaccaaag
     2221 catccgcata ttgaccatcc gcagcaatac ctgccgtctc aatattctct ttattttgac
     2281 cgttataggt atatttcaac atcccaccaa attggcgacc tttcattaaa atatcactta
     2341 cggttttagt tttatagttc acagagccgc ctaatgcccc attgcctact tttgtgcttg
     2401 agcctttttc aatggttaca tcgctcatta attcagtatc gatttcaggg cgagatttat
     2461 tgtagtaact atagcgacta aaggtggcat agttatttga tgctgcttgc gatatgccat
     2521 caactgttac tgccacttga ttaccttcaa caccacggat attaaaccct tgtgggccaa
     2581 agcggcctgt ttgcggaacg cccatatcag tactataacg tactaaatct tcattgctca
     2641 tcaccgcttg ctgtttaagt aggttctcct gctgctcatt tacttcaata gtatctagtt
     2701 caatgctact aatctttgtt tcttgagcta aggagagttg agaaataaag ggagtaatcg
     2761 ctattgctaa tacagtttgc tttatttgca tattttagat cctctagtta gtttaatccg
     2821 tttaatgtta acactatatc attttaattg aaaattgaaa taataattat tattatttaa
     2881 gtttagataa aaatcaaatg gagtataaaa tgagaacctt acttttttct ttcattgccc
     2941 tatcaatgtg tttaaatacc acaaaggcgg cagaaaaaat tgtttcaact gcgggctatg
     3001 cttccgaaat tgtcgcagca ctaggaaaag ctgataagtt agtcggtgtg gataccactt
     3061 cagttaaacc tcaaacgata atggagaaaa aacctaaaat cggttatcgt cgccagcttt
     3121 ctgctgaagg tattctctct ttaaccccag atttgattat tttagcccct gatgccggcc
     3181 ctaacgcagt tattgagcaa attaaagcca gcggtattcc attacttcac ttaggagaga
     3241 aaccgagctt agcagggatt cgtgaggata ttcagcaaat tgccaaggcg attggtgcag
     3301 aatcagaggc aaaacaatta acagaaacca ttctggcaga tgaaaaaaaa ttagccgaca
     3361 ttcgtagcca acattctact gacaaagaag tcttagtgct gattgacact gcatcgcaag
     3421 gtatctttgg gctagggaaa aagagtgtgg gtgatcattt cttaaccttg ttaaatctaa
     3481 acaatagttt caatgctgag ggcaataagc cactcgccaa tgaggcttta gctgcaagca
     3541 atgccgatgt tattttatta gcctcccgta atcaggcaaa agaatctgca acgatcagta
     3601 aattagcaga atccagccca caatacgccc aactcacaaa tacacaagcg ggcaaaaaag
     3661 gctgtgtttt tgcaatcaat attttagatg ccttgggctt tgggccttac actgctcaat
     3721 atgcacacca aattctcacc actattcaac cttgtttaaa ataacggata cgctttgaaa
     3781 ctgcatttaa ccttaatttt cactttaatt atcagcttag tgatttgtac ccatttaggg
     3841 gcgatgtcat tacccctatc cgcttggcac tgcaacaacg ctgaatgcga aagtgcagcc
     3901 tatattttat ggcaaatccg cctgcctcga ttactagggg cattattcat cggggcagcc
     3961 ctcgctatta gcggagcaac aatgcaaggg ctgtttcgca atccgttagt agatccgggg
     4021 attattggtg tctcttcagg tgctgcattg gctgcggcat tatatattgt ggtgattcag
     4081 ccactactgc cggaatcaat cagctattat gctctaccta ttgccgcctt tttagggggc
     4141 tggctggtga cttttatgct ctatttactt tctcaacgta acgggcaact acatatcgcc
     4201 attatgctat taattggtat tgctctagct gcatttagtg gcgctttaac cggcatactg
     4261 atttatgttg ccgatgataa ccaacttcgt agtttaacct tttggagtat gggatcttta
     4321 gcaggtatga attggcaaat ggtggcaatg atggctgcgg ttgtcttcat ttgtagccca
     4381 cttatttggc gggaacaccg tgcgttaaac gccttaacat taggtgaaga agatgcacaa
     4441 tacattggtt ttgacattgc aaaagtcaaa cgtcgtcttg tgttttacgt tgccttatta
     4501 accggcacaa gcgttgcctg tgttggggct atcggctttg tcgggctggt tattccacat
     4561 ttaatgcgtt tactgggagg cagtaaccac cgccatttat tactcaatag tttggtttgc
     4621 ggtgcaatct tattaatgat tgcagatact cttgccagaa ccctagccgc cccggcagaa
     4681 atcccgattg gtatttttac cgccttattt ggtgcgccat tccttgcagt aatggtatgg
     4741 aaaagtggga aacatatcta atgagcaatt tattaacttg ccaaaattta agcatcgttc
     4801 atcaacaaaa aaagttgctg gagattcaag aaattgcctt tgaacaagga aaatttaccg
     4861 ccatcatcgg tccaaacgga gccggcaaaa caaccttgct caaagcctta agcggtaata
     4921 atgcacaaac taacagtgcc gtattttatc aacatcaacg cttaacagac ttaaacggat
     4981 atgctctggc tcaaaaacgg gcaatgctca gccaacagag ccaaattgcc tttcccttaa
     5041 aagtagaaga attggtacaa ctcggaagag agccatatcg ccaaagtgaa tttgcaaaat
     5101 ttaatgaaaa aataaccgct tgggctatgg aaacaatgtc tttaaccgca ttaaaagaaa
     5161 gaagtagcat acaactttcc ggtggagaac aacatcgagc gcatattgct cgagtgctgg
     5221 ctcaactcgt tcctgaaccg aatgccgatt taagcggaag ctggcttttg cttgatgaac
     5281 ccaccaacca tttggatatt catcaccaat atcagctttt ttccttacta caaaagctga
     5341 aacaacaagg cttaactatc attgcgattt tgcacgatcc tgcattggca ataaatcaag
     5401 ccgatcatat cttaatgcta aaaaatggag aaaaatttgc tgaaatgtcc gctaaagcca
     5461 ttgcagaaag ttgtttatta gatgagctgt atgaaatgaa aatgggctgt cgctattgcc
     5521 ctcacagcgg gcaatattat ctttgccctg cattagctga aagttagggt gcgatgcacc
     5581 ctatcgttta atcttctgca tatccacaag caggcagtag tttaccgtct aaatacgctt
     5641 tgccgtgctg agaaactaat ctacccgaac agaaccactc aatcaccaac ggataatatc
     5701 gatgttcttg ctcaaccact cgagccatta catcttcaat ctcatcttca ggataaatcg
     5761 gcactttagc ttgtaatacc accgcaccag catccacttc ttcattcacg aaatgaatag
     5821 tcgtgccgtg ttcactttcc ccagcctcta tcgctctttg ataagtgttt agccctgggt
     5881 atttaggtaa taaggaaggg tgaatattga gtattttgcc agcaaaatgt tgcgtaaatt
     5941 caggcgttaa aattttcata tagccggcta atacaattaa ctcagctcct aactgctcaa
     6001 tttgttcggc aatcgcaaga tccatttcca cattgctttg gtaatcttta cgagaaaata
     6061 caaatgtcgg gattcccgcc tgtttagctc gaatcagccc ataggcatct gccttattgc
     6121 aaattacacc gcaaatttga ccgcttgtat ccgcagattt ttgcgcatca atcattgctt
     6181 gtaggttaga accattccct gaaattaaaa ccacaaattt tttcatatta cacaccggct
     6241 gaatattcat cgttctggat attatgcctt gaatctcaac atcagtacag gaaagaaaaa
     6301 gggcgtattg gttaaaataa gccactttca agctagaaac gcacctctgc ccctagtgtg
     6361 taagttcgac ctctggcact atttgtgaaa cgataggtgt ctgtatcata gtcatactct
     6421 tctgcggtgg aagagttata cgcatttaag gcatcaagat aatttcggtt catcacattt
     6481 tgtaccccgg cttttaaggt taaatgttta ttcactttgt aatttgcata taaatcgata
     6541 atcaccggaa tattcggtaa ctgctcgtga ataatgttgc catcttcgtc taaatcaata
     6601 ccgacacgtt tcgctttgcc tgtatattta aaaatgctag acagtgttaa ttttttatcc
     6661 agcaatttag cccctagctc caaagtcgca taatcttttg gtagctgggt ataagcttca
     6721 gtgccaaatc cataaagaat agtcgcacct tttgaagtgg gtgctgtgct ttcagttcgg
     6781 gtataactac cattgacaaa aaaagcatcg gaatcgtaag ccagctcaac ttcccaacct
     6841 cgatttttaa ccttttcagg gtgattcaca taaatttgga actgtatagc attggtagca
     6901 tcacttgaat ttcgacatac tgttggccca caaccataca acgagaggtt atacaaatag
     6961 tctttaatgc gtgagttaaa atataccgct tttagcccca agatatcatt attgagtaat
     7021 acattatctt gatgaatatt aaacccaatc tcataggttt tcgcactttc tggtttcaaa
     7081 aacgggttca cactcaagcc atttcgactg gtattaaaca tttcttgcac attaggcgaa
     7141 cgggaggttt gtttgtaact gacaaaaggt tgaaaccaat cagcaacctg aaatgctaaa
     7201 gtggcagaag gattcaactt ataatgtttt ttattaacat caaacccaaa agaagggaaa
     7261 caataatcca tatcatcgct atcgcattct ggcttatatc cttttaactg atagcgtgaa
     7321 tagtgaagac ttgaatttaa agtgacaatg ccgtatttcc attcggtgtc taggtaaagg
     7381 gaatcaatat tttgcttacc tgccggccca aaagcggcat tgctaatcgc tccatcatta
     7441 ttcttacttt ccggtaaatc acgggaatat ttatttccct gactcaaaac ggctggtgtt
     7501 attcaaatca aacatccaca ttttgttttt ggttgaggca tcttctaatg tccatagttt
     7561 tgcatcatcg tggaaatctt gcttagtttc tgttactgct gttaggaatt tcagatcaat
     7621 ccaatcagat tgaggctggt aactggattc taaggaatag gtcacactat caatattacg
     7681 ccccactaag ctatttttat attgacgtcc ggacaattta aactctgaat cttgatttgg
     7741 cttaaaggca atttttccca tataagattc agggtgattt tttaaccctt gcatataagc
     7801 agaatccgtt gccattgtgc cattacctcg gcgataattt tgactgatac tacttttgct
     7861 aaaagccaat aaactgccaa gagaaccact ttccagcaca tcaacttttc cggctagtgc
     7921 aagcattccg ttttttccca gatcattatt gccataatta aaacggctta atacgccgac
     7981 tttatgttgt tctagtagaa tatcttcgac atcaatcgtt ttaaaattag cactaccggc
     8041 taaagcattc aatccggctg caccattgtt gtagcctttc gcaatatcaa ctcgggttaa
     8101 aaaattttga tcaattaaag tgctgaattg gctcattggc ccgttaccat cagtgtggaa
     8161 cttaccacct ccgtttgctg atgtaccaag ctgtgtttgt ggcacgccat caactaaggt
     8221 atttacccga ccaagaccac tcatattacg aatattcaca ctcacgcccc cttgccccgg
     8281 gtcaatttgg gtatagccac ctgcgacaga acggacaata ctatctaaac tttgcattgc
     8341 attcacattc attgctcgag aactcaccga gccggcttta ctgaaattct caaaattagg
     8401 gttttccaca gtgccataaa ccgtcacagt atcaagctcc gcaatatttt tcgccttttc
     8461 ctctgccaat gcagtttgcg atcctcccat acacaaaacc ggaaacaaaa tgcgtgtgat
     8521 tatattaaat ttcataattc tccttattga gtgacccaaa gataatctgc ctgtgaagaa
     8581 gtaatttctt ctctctctgt tttaagcatt agcaccgcta ctttttttgt tcggtcatat
     8641 tccgcaatat gcaacggaac gccaagatct ttgcgaacgt ggtggttacc tgcaatcagc
     8701 aagctagtcg ataacgcatt ttttactaat ttttctgcca ttctgcgatc acggaattgt
     8761 tgtactgcca ccatattttc catcgggtaa ggcattccgt gattcattga cagcaacagt
     8821 tgtgcgatct tttgcttaac ttcagaggaa gtggatacag aaccttttaa tggctccgcc
     8881 ccatttaata aaatttcaac ctctttatct gttaagttag tggctataac acgactattt
     8941 gaacctaagc tctctaccac taaatcttga tacatcttcc aatcccattt ttgccattga
     9001 attgcctctc ttaaatccgt ggctgataaa ttaaccggtc ggttaaactg aatgcgatca
     9061 atcgcaggct gctgatccac atttaacatc tccaacgcaa ttaaatgtaa cttggctttc
     9121 ttcgtaagtt gattaaataa atacaattca atttggtggt gaattaactg agtatgctcc
     9181 tcaccaacta aaacgtaatc ttgagaagat agacgggaaa gtagttcagt aaatgaaatc
     9241 gtttgattgg tattcagatc aataatttgg ccgatagagt ccacgttttg ttcattaagg
     9301 gattgcgttg aaaccgagca gcctaaaaga aaaaaagcca taaaaaggct agctaaaaaa
     9361 gagg
//
LOCUS       DANMGB010000093         9242 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.093, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000093 DANMGB010000000
VERSION     DANMGB010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9242
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.093"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..230)
                     /locus_tag="PXG19_001649"
     CDS             complement(<1..230)
                     /locus_tag="PXG19_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066934.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKE"
     gene            complement(325..1413)
                     /gene="hisB"
                     /locus_tag="PXG19_001650"
     CDS             complement(325..1413)
                     /gene="hisB"
                     /locus_tag="PXG19_001650"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL6066935.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            complement(1598..2665)
                     /gene="hisC"
                     /locus_tag="PXG19_001651"
     CDS             complement(1598..2665)
                     /gene="hisC"
                     /locus_tag="PXG19_001651"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6066936.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            complement(2695..3135)
                     /locus_tag="PXG19_001652"
     CDS             complement(2695..3135)
                     /locus_tag="PXG19_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6066937.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            complement(3202..3579)
                     /locus_tag="PXG19_001653"
     CDS             complement(3202..3579)
                     /locus_tag="PXG19_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL6066938.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     misc_feature    complement(3601..3723)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(3853..4842)
                     /gene="rsmC"
                     /locus_tag="PXG19_001654"
     CDS             complement(3853..4842)
                     /gene="rsmC"
                     /locus_tag="PXG19_001654"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL6066939.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     gene            4972..5394
                     /locus_tag="PXG19_001655"
     CDS             4972..5394
                     /locus_tag="PXG19_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL6066940.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            5387..5824
                     /gene="rimI"
                     /locus_tag="PXG19_001656"
     CDS             5387..5824
                     /gene="rimI"
                     /locus_tag="PXG19_001656"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL6066941.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(5873..7720)
                     /gene="typA"
                     /locus_tag="PXG19_001657"
     CDS             complement(5873..7720)
                     /gene="typA"
                     /locus_tag="PXG19_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL6066942.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(7905..8582)
                     /locus_tag="PXG19_001658"
     CDS             complement(7905..8582)
                     /locus_tag="PXG19_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL6066943.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            8653..9192
                     /locus_tag="PXG19_001659"
     CDS             8653..9192
                     /locus_tag="PXG19_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL6066944.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
BASE COUNT         2482 a         2086 c         1965 g         2709 t
ORIGIN      
        1 tcttcttttt gctccttaaa tcttttacgt tccaactgca ttccatgcaa aacactcaat
       61 aaagtaacag cagaaaatat accaccaata tagctaccaa aatgatccca tttttcacta
      121 tctgaggata atcccccgtg aaactgataa aaatataatc ctaataacaa tacaactaac
      181 agaacatacc atttattatt ctttataaag tcaataactt ctctaatcat caatatatcc
      241 tttataacaa gcggtcaaaa tccccaaaaa ctttgcaaat ttcaaccgca ctttcgggcg
      301 ggttaaaacc cgcccctacg gtgattataa tacaccttta ctgcttggta gttcattccc
      361 ttcaatacga atgcactgtc tgagtgttct gccgaagact ttgaacaggc tttcgatttt
      421 gtggtggtcg ttgtcgcctt ttgccttgat gtgcagggtg gcgagcatcg tgaaggcgat
      481 ggattggaag aagtgttcgg tgagctcggt gctgaaatcg cccactttgt cgcgtttgaa
      541 atccgctttg aacttgatga aaggtctgcc tgataagtcc atcgcacatt ccgcacggct
      601 ttcgtccatc ggcaacacga agccgaaacg ggcgatgccg cgtttgtcgc caatcgcttg
      661 ttttaatgcg gtgccgaggg cgagggcggt gtcttccacc gtgtgatgtt cgtcaatcca
      721 caagtcgcct ttggtggtga tgttcattct aaaaccgccg tgggtggcaa tttggtcaag
      781 catatggtcg aaaaagccca cgccggtgct gatttcgttg ttgcctgttt cgtccagcca
      841 cacttgcact ttgatgtcgg tctctttggt tttacggata acttcggcaa agcgctttgg
      901 tcgctcgcca atgttggtga cggcttcgcc cagtagtttt tcagcaatca aatcccagtt
      961 cagtttttca gggtgatatt gcaacgcccg aatgccaagg ttttccgcca gttgcacatc
     1021 ggtagcacgg tcgccaatca caaagctgtt ggctgggtcg aacagttggc ggtcgatata
     1081 tttttgtagc agtttggtgt gcggtttgcg gcaatcgcaa ccgtcttcgg gcttgtgtgg
     1141 acaaatcagc acatcatcaa attcaatccc ttgcgagttg aacaacgcca tcattgcatt
     1201 gtgcggtttg tcgaaatctg cctgtgggaa cgaactcgtg cctaagccgt cttggttcgt
     1261 aaccatcaca aagcggtatt tgcccttgag tttgagcagg gcaggaatca cgtttttctc
     1321 gaatttcagc ttttccaagc tgtcgatttg aaaatcggtt tttggctcat caattaacgt
     1381 gccgtcacgg tcgataaaaa gggtgggttg cattggtttc tcctgtatct gtatcttatt
     1441 cattactctc cccacacgcc aaggcatatg gggttaagca ttagtgagag actttgcctc
     1501 tctgtattca gtcccaaagg gactgactta tgcgtaacct agtacggcta tgccgtgcta
     1561 ggctataaat gtctcttaaa atactgctcg ttaaattcta tctctgaaat tggctcagtg
     1621 ctgtaatcgc ctcaaccacc ctcaaattct cctctctcgc ccccaccgta atccgaatgc
     1681 aattttgcaa tcctaacgct ttgtgttggt cacgcaaaat aatgccttgc tcccaaagtg
     1741 ctttgaagac tttttgtccg tcttggcatt tgaataggag gtagttggct tcgctgtcaa
     1801 aaacttgttc tacaagcggt aagttttcca gatttttttg caattcggca cgcagggtga
     1861 tgacttccgc cacacgggtt ttcatctgct caatgccttg tggggagagg gcttgggcgg
     1921 cgatgtcgga aacaggcaca ggcagcggat acggggcaat cactttttgt aacacgccga
     1981 tcagctcagc gtttgccaag gtaaagccac aacgcaaacc cgccaaggca aaggctttgg
     2041 atagggtgcg gataatcgcc aaatgtggga aattcgccag ctcgcttacc aagcgagctt
     2101 cagggcaaaa ttcgatgtag gcttcgtcca ccaccacaat cgctttgcct gcggtgattt
     2161 gcaaaagttc gaacaaatcc gaccgcttga ttaagttgcc tgtcgggttg ttcgggctgc
     2221 acacaaacac cactttcacg ccctcgaggt tagctttgat ttgggctaaa tccaactgga
     2281 aatcggcggt taaaggcaca gttttggtcg caatgccaca ggtgtcggca ctcacggcgt
     2341 acattccgta ggttggtggg cagtagagaa tgctgtcgtt tgcctcgcaa aaggctcgga
     2401 taatcagctc aatgctctca tcgcccccac gggaaaccag cacgttttca ggtgcaacgc
     2461 ctgcatatcg ggcgtaacct tcaatcaccg cctgcggttg aggttcaggg tagcggttaa
     2521 aagtgcggtc ggttaaatca aagtttggcg aaagggcata ttcattggca ttcagccaca
     2581 catcgccact accccccaaa cgccgtgccg attggtaagg ggtgagagct tgaatgtttt
     2641 tacgggaaag ttgtgaaatt gtcatattgt gttcctgtat aatttataca tagtttagaa
     2701 attttttcga tattgaataa taccgctatc attagctaat ttattataaa gctgttgtgc
     2761 ttgatgattg tttttatctg ttacccaata tactcggtta tatccttttt cctgtgcata
     2821 tcgataaata tattcaatta attcttttcc tatgccttgg ttgcgatatt cagctaaaac
     2881 aaataaatct tccaaataac agcattcagt taaattccaa gtatttgggt gaatcacaat
     2941 atgaacaaaa ccaaccattc tgttatcaac aaaagcccca aatcccttta cattttcact
     3001 ctctgaaact ttctgccaag ttgattgaat aatatcatct gctaaattca cttgataaaa
     3061 atctaaatat tgttgccaca atagtttcca ttcagtgaga tttttggagg ctaacggcga
     3121 aatattaata ctcatatttt ttcctgttat gcttttaata aaataaagtg ttcaatcagt
     3181 ttaatcatca gttctttttg ttcaggcaaa ctttctgcca ccaacaaggc taagacaacc
     3241 agtgtattga ctgagcaaac caatcacctg ctcaaactcg atacctcgtt cctgcaaacg
     3301 gcgttcgtta agggcatagc ctttcaccag atagtctttt aggcgaacga cttctctagc
     3361 accttcaatt tgaactgttg cattttttgc aacagttgcc tcacgctcca gttcaccttc
     3421 ttggtagata tttcgtaagt gccgagaaat aacagactta tctcgtccaa aaatatctgc
     3481 catttgctgt aaacttagcc acaccgtttc cttatcaaac tgcacggaaa cttgggtttt
     3541 gccgtcttgg ctttggtaaa tttcaatcgg gtttttcata ttattcccaa attttatcta
     3601 taaaaaaatc tctcgaaagt tgccttccga gagatcttta ttgatttgct acacttgctc
     3661 ggaagagtta tcttccgcac acaccaaatg cccgaaagat atcaggttaa agtgtggtgg
     3721 tgatgtaaag tgtagtttaa attcattgca ttactccaaa acagtatgaa cagaatttac
     3781 gtcaagccgg cagaaatatc aagcactttt ttaagcaaat accggctttt ttataaccgt
     3841 ttgttctgcc tattatgttc ttgcggaata caccttaaac ttggtggatt ttgccagtac
     3901 gtcgtgtttg ccgaaggctt tatcgagcaa atctgggtaa ggcaagaatg cgtttgcgac
     3961 aattcgcagc tcaccgcctt tggttaggtg atttttagct tggaaaatca actcctccac
     4021 cgctcggtag gcggtatcga ccccgtcgtg gaatggtggg ttggagacaa ttaaatcaaa
     4081 ccgttcatta atgtgagaga acacatcact tgctaccact tccccctcta actgattttc
     4141 cgccaaagta cgtctgccgg attccaacgc cattgcgtga atatcgctca tcgtcagttt
     4201 gattttcgga aattgttgtt tgagcgttgc cccaatcacg ccagccccac agcctaaatc
     4261 taacactttg ccttttagcc tgtctgcttt gtcgaaggtt gaaagcaata atttggtgcc
     4321 gttatccagc tccgccgagc taaaaaccgc tggtagatcg aacacatcta agtcttgcaa
     4381 gcggtaggat ttccagaatt ttttgcaatc gaatgtcggc acggtctgta gctcaaaatg
     4441 gtataaacca caacggcgtg cagagtcgat tttggcaata ttgccgaacg gttcgagcag
     4501 tttttctacc gaacgaacac cagctcggtt ttcgccgata atcaacattt cttgccctgc
     4561 ttggcattgc gacagccatt gtagcagttg gaattggcat tcctgcttgt tcttcgtcca
     4621 ataaaacacc gctaactcgg cactcaaacc acattctaag ccaaattcaa cctcactatg
     4681 gtggcgtgcg taatcaaaat agctactgaa taccgcaacc ttttccgcac gagattgcag
     4741 ctggcgggca aaatcatctc gcacatcgcc aaataataac accgacttgt tttcaaataa
     4801 cgccaaatgg cgttcaagta cttcgctttc taaagagagc attttcttac cttatctaaa
     4861 aaatttagcg tgaatatacc gaatttaagt acagaaatct tgaatttttt gaaaaaagtt
     4921 tctgttcaag cggagttttg atactatttg caaaatttga tgaggtttta aatgaatcgt
     4981 cgtgatttac tgttacagga aatgggtatt tcgcaatggg tgctaaccaa tccccaagtg
     5041 ctaaaaggcg atgctcaaat ccgcctaaac aatgcggtaa aattggtggt agtgtgtgag
     5101 gaagatcacc aacacagccg gctctttgcc gatattctgc gtgctttaaa gttaaaaaac
     5161 agcgaatatc aatggctgac tggcgaacaa tcacaacgtt tggtgtttga gcattcgccg
     5221 atcttttggc tgattcaagc ggaagaacaa gcggtcaaaa tggcaaaaag ttttactaat
     5281 cagaccgctt ggaaaaacga gtcttggcaa gatttagcca aatctacgac caaacgccaa
     5341 ctttggcaac aaattgatac tttttcggca caatttggag aacagcgtga ttgagcaaat
     5401 tcaagcggaa gatttcgagc agttatttga aattgagcaa caagcccatt tagtgccgtg
     5461 gtcaaagggg acgttattaa ataatcaggg tgaaaaatac ctgaatttaa aagtggtaga
     5521 gcaaaacaaa attgtggctt ttgccattag tcatatcgtg ctagatgaag caaccttatt
     5581 taacattgca gttgctcctg attttcaagg caaaggcatt ggcaagcggt tactttccga
     5641 attaattttg caactgcaac aacggaaact caccaccctg tggttggaag tgcgagaatc
     5701 caaccattct gccagaaaac tctacgattc actcggtttt aatgaagtta ccacccgcaa
     5761 aaactattac cccacgccaa acggtagcaa agaaaatgcg gtggtaatgg cgttatattt
     5821 gtagggagaa tttaaaacca aaagagcgac ctcagtcgct cttttttatc agttagtgcg
     5881 tgctggtact ggttgtagta cggcttgcac gtttccggtc gttttcagtt aataaacgtt
     5941 tacgaatacg caccgattgt ggtgttactt ccactaattc gtcatcgtca ataaactcta
     6001 acgcttgttc tagagtgaaa cgcaccggtg tggttaaaac gatggcatcg tctttacctg
     6061 atgcacgcat attggttaat ttcttaccct gtaagcagtt tacggttaaa tcgtttgaac
     6121 ggctgtgaat cccgataatt tgcccttcat atacatcaac accgtggtcg atcattaatt
     6181 ttccacgctc ttgtaagcca aataatgcgt atgctaatgc cttacccgtt gcgttagaaa
     6241 ttaacacacc gtttttacgc tgaccgattt cgcccggttt tacgtcatca tagtggctga
     6301 atgtagagta aagtaaacca gtacctgagg tcatcgtcat aaattcgtta cggaaaccga
     6361 ttaagccacg gcttgggatc acatactcta aacgggtacg acctttgccg tccggaatca
     6421 tatcacgcac ttcaccttta cggataccaa gtgcttccat cactgaacct tggtgttgct
     6481 cttcgatatc aatcgtcact tgctcaaacg gctcttgttt tttgccgtct tcttcgcggt
     6541 agattacttt cgggcgagac actgctaact cgtaaccttc acgacgcata ttttcgatta
     6601 ataccgataa gtgtaattcg ccacgacctg acacacggaa ttcgtctggg ttcgaagttt
     6661 cttccacacg caatgccacg ttgtggacta attctttgtt taaacgctca agaatttggc
     6721 gtgaagtcac aaatttacct tcttgaccgc agaatggcga ggtgtttacg cagaagaaca
     6781 tcgttaccgt tggttcatca acgcttaatg ctggtaaagc ctctactgcg ttaatatcac
     6841 aaatagtatc tgaaatattt aattcgccta aaccagtaat cgcaacaata tcgccagcaa
     6901 aggcttctgt tgcttcaaaa cgttgtaaac ctaaatgccc caacacctga ccgatacgac
     6961 cttggcgagt tttgccttcg ctatctacaa tcgttaccgc ttggttaggt ttcaccgaac
     7021 cacgtttgat acgtccaata ccgataacgc ccacatagtt gttgtagtct aattgcgaaa
     7081 tctgcatttg gaatggtgca tctaattcca cttgtggtgg ttgaacgtgt ttgacaatcg
     7141 cttcataaag tggggtcata tctgccgcta ggtcttcgtg ttctaagcct gctacaccat
     7201 ttaaggctga agcgtagata attgggaaat ctaactgctc atcacttgca cctaaattta
     7261 caaacaagtc gaacacttga tccaccaccc aatcagggcg agcacctggg cggtcaactt
     7321 tattgatcac tacgattggt tttaaaccgt gagcgaacgc tttttgcgtg acgaaacggg
     7381 tttgcggcat cgggccatca aaggcatcaa ccactaacag aacagaatct accattgaaa
     7441 gtacacgctc aacctcacca ccgaagtcag cgtgccctgg ggtatctacg atattgatgt
     7501 gataaccatt ccagttaatt gccgtatttt ttgcaagaat ggtaatgcca cgctcttttt
     7561 caagatcgtt ggaatccatt acacgctcat caacgtcacc acgagtttca ccaaaggtgc
     7621 ctgattgttg taaaagttta tcaaccaagg tggttttacc gtggtcaacg tgggcaataa
     7681 ttgcaatgtt acgcaatttt gaaatatcta cattttgcat tggaatatct ttaagttaag
     7741 tcaaaataaa aactctcgcc catcaaaact ggcgagagtc aagaaattag gaggcgtaat
     7801 tatacagact ttttccgctg ttggctacaa aacaagcggt ggaatttgca aagtttttgg
     7861 cgaatttgac cgcttgtatc agctttatgt aaaaactcag ctggctaacg tctcgcccca
     7921 aaaatcgcag tcccaatccg caccattgtc gagccacatt caatcgccgc ttgcatatcg
     7981 tccgacatcc ccattgaaag ggtatcaatg tcgtcaaatt ctgtttgcaa gcggttaaaa
     8041 agtagctgca ttttgcgaaa ggcaactttt tgttgctctg gctcgctttc tggtttggga
     8101 atggccatta agccccgcag tttcaaattc ggtaattgag aaatcgcttg ggcaagtggt
     8161 agcatttcat ctggttcaat gcccgatttc gaggcttcat cgctgatatt aatttgaatc
     8221 agcacgttga gcggggcttt atccgctggg cgttgttcgt ttaaacgctc ggcaattttt
     8281 aatctatcca ccgtttgaat ccaatcaaaa taggcagcga ccaatttggt tttatttgat
     8341 tgaagtggcc caataaaatg ccattctaat tcggggcgat ttgcaaaaaa ttcgattttt
     8401 tcgaccgctt cctgcacata attttcgcca aatgcacgct gccctgcctc aatcgccgct
     8461 tgaatcgcct caactggttt agttttggag acggctaaca aacgcacgtt atctcgttga
     8521 tattgttcgg aaatttgctg aatttgttga tggatttgcg ataaattctc ggcaatcgac
     8581 atttcggttc ctttggtaaa cggaggtaaa aaagctataa tggtaaaatc ataccatatt
     8641 tgaggcaaaa aaatgttaga tctcaccaag attaaattag tgattaccga tgtggacggc
     8701 gtgctaaccg atggcggaat gtactacacc gaccaaggcg aagtaatgaa acgtttccac
     8761 gttcacgatg gtttaggcgt taagatgtta caaagttgtg gcattaaagt ggcagtactc
     8821 tcgggcggcg atacggcttt gctccgcaaa cggttagagg tgctgaaaat tgatctcgct
     8881 ttgttaggca aaatggaaaa acgctccgcc tgctttgagc taatgcagca agccggtgtt
     8941 acccctgagc aaacggctta cattggtgat gacaccttag atttaccggc ttttgaagtg
     9001 tgtggcattg cgattgcaac ccgtaacgcc ctcgattaca tcaaagaaaa agcagattgg
     9061 gtattgcaaa aagccggtgg tgaaggggcg tttcgtgaag tctccgacca aattttggag
     9121 gctcaaggat tcggtgaaat ttttaaaacc gcagatggtt ttttaacggt agcggggaaa
     9181 atggctcagt agactcttca agcagttaaa tttcatttta tttttgcgat ctgcatcgaa
     9241 aa
//
LOCUS       DANMGB010000094         8952 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.094, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000094 DANMGB010000000
VERSION     DANMGB010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8952
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.094"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..217
                     /gene="zapB"
                     /locus_tag="PXG19_001660"
     CDS             <1..217
                     /gene="zapB"
                     /locus_tag="PXG19_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL6066945.1"
                     /translation="SLSVLDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLR
                     SEYEQLKVEQQNFQDRLRSLLGQIDNV"
     gene            273..854
                     /locus_tag="PXG19_001661"
     CDS             273..854
                     /locus_tag="PXG19_001661"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL6066946.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(945..2063)
                     /locus_tag="PXG19_001662"
     CDS             complement(945..2063)
                     /locus_tag="PXG19_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL6066947.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2153..3601)
                     /locus_tag="PXG19_001663"
     CDS             complement(2153..3601)
                     /locus_tag="PXG19_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6066948.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3748..5445)
                     /locus_tag="PXG19_001664"
     CDS             complement(3748..5445)
                     /locus_tag="PXG19_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL6066949.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(5589..6140)
                     /locus_tag="PXG19_001665"
     CDS             complement(5589..6140)
                     /locus_tag="PXG19_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL6066950.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6239..7048
                     /locus_tag="PXG19_001666"
     CDS             6239..7048
                     /locus_tag="PXG19_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6066951.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            complement(7065..7757)
                     /gene="tsaB"
                     /locus_tag="PXG19_001667"
     CDS             complement(7065..7757)
                     /gene="tsaB"
                     /locus_tag="PXG19_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL6066952.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7844..8926)
                     /gene="aroG"
                     /locus_tag="PXG19_001668"
     CDS             complement(7844..8926)
                     /gene="aroG"
                     /locus_tag="PXG19_001668"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL6066953.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
BASE COUNT         2482 a         1986 c         1889 g         2595 t
ORIGIN      
        1 gtcattatcg gttttagacc aattagaaga aaaaattaaa caagctgttg aaactattca
       61 attacttcaa ttagaagttg aagaattaaa aggtaaaaac gatgcagcga aacaagaaaa
      121 cgacaccttg cgcagcgaat atgaacaatt aaaagtggaa caacaaaact tccaagatcg
      181 tttacgttca cttttaggtc aaatcgacaa cgtttaattc tattttcagc acaaacggct
      241 aaatttttag ccgtttttta tttgttacag ctatggcaaa actctatttt tactactcct
      301 caatgaatgc aggcaaatct actactctgc ttcaatcttc ttataattac caagaacgtg
      361 gaatgaacac tttagtttat accgccgcta ttgatgaccg tttcggtgtg gggaaagtca
      421 actctcgtat cggtatttca caagaagcca atttatttac cgctgatacc aatctatttg
      481 cggaaattaa ggcattacac tcaaacaaag cgttacactg tatcttgatt gatgaggctc
      541 agtttttaac taaaacacag gtttatcaat taagtgatgt ggtcgataaa ctcaaaattc
      601 cggtgctttg ctacgggcta cgcaccgatt tccaagctga attatttgaa ggtagcaaat
      661 atttgttggc ttgggcagat gagctggaag aactcaaaac catctgtgat tgtggcaaaa
      721 aagcccattt tgtcgttcga ttaaatgaaa aaggcgaagc cattaaagac ggtgaacaaa
      781 tacaaatcgg cggcaatgat agatatctct ctgtttgccg ttatcattac aaacaaaagt
      841 taggtaagct ataagctaca agaagcagca agcggttaaa ttttcgggaa tttttgcaaa
      901 ttttcagcga aatttaaccg cttgtttgtg ttatttacct ctctttactt tcctgcaaac
      961 cgaatttgct cactcatttg tctcatcaca ctcgaagtct cggcaaaaaa ctgttggtaa
     1021 gaggggcaaa ggtagttgtg gttttcgctg tttgcttggg ggacgatgcg gtgtttgggg
     1081 cagccgccgt ggcaaagtat gcggaatttg cagtttaggc aggcttgcga gagttttgcc
     1141 tgtttattct gcccgaattg gcgttgggcg gctgatgaga cgatctctgc cagctgctgt
     1201 tggttgaggt tgccgatgtg gtaatcggga tagacgaaat ggtcgcaact gtacacatcg
     1261 ccacaggctt ccaccaccag cgagctgcca caggtcgggc ggaatacaca gttgttggag
     1321 ggatagccaa gccattgccc gagcaggtta tcaaactcga tcacaaaaat ctgcccacgg
     1381 tcaggcagcc attcgtgaaa aacatccact aaaaattgcc cgtagccttg gggcggaacg
     1441 gaaaagggtt gtaattcccc cttgtggctt tccaccaccg gaatgaactg catataacgg
     1501 ctaccgaggg ctttgagggc ttgataggtt tctctgcccc gttgccagtt gcggtcgttc
     1561 accaccgtga gggtgttaaa ttccacgcca acctctttca ataaatcgac cgcacttttc
     1621 acccgttcaa aggtcggttt accgttggtg gaaatgcggt agcggtcgtg aatgtcgctc
     1681 agtccgtcaa tggataagcc caccagaaaa tgattctctt tgaaaaagct cgcccactgg
     1741 cggtttaggg caatgccgtt ggtttggatt gcgttggtga tctgcttgcc gtttgcaaat
     1801 ttttgttgat atttgaccgc ttgtttgtag aaatctaagc ccagcagggt cggctcgccc
     1861 ccctgccaca caaaatccac ccgttggctt tggttggctt caatgtaatg acgaatgtag
     1921 ttttgcagcg tttcatcgtt cataaactgc gatttttctg gcggaatggt ctgttccttg
     1981 ctcagataaa aacagtactc gcactgaata ttacagtgaa aactgctggg ttttgccatt
     2041 aggtggaagt aggtggtggt cattgtatct ctaaattgta ggggcggact ttatgttcgc
     2101 ccattgttta cattaatttt cgggcgggta taaaacccgc ctctacaaac aattatatct
     2161 catcaataat ccgatacacc caattttcca gtgggtcgtt gaggcgtttc atttcctgtc
     2221 gcatttcttc caacatctct tttttcacgg cttggtaggc ttcgtcataa aagaggttgt
     2281 gcatctcttc ggggtctttt ctgacatcgt agagttcgca gcggtcggtg gcgttgaaga
     2341 ccaatttgta atccttacgc cgccacattc gctgttcaaa atagacaaaa tgccctgcca
     2401 gttggcacaa caagcctttg cggtcgttgt tttggctttg tctggttatc ggcagaatac
     2461 tctcgccttg gaaagcggtc gggatcggtt gatttgccac atcatacacg gtggaagtga
     2521 gatcgtgcaa ataaacgagg ttgtcatcga cttcgttcac ccttgtagag tgcggatctt
     2581 taataatcag cggaatgttg taggtggttt caaacataaa ctcgcctttt tcgatcatct
     2641 tatgcgcccc catcgcatcg ccgtggtcgg cggtagcaac gaggaaggta ttttcataga
     2701 gattgttctc ttccaagaaa cggaacagct cgccaatggc atcgtcaatc agcgtgatgt
     2761 agccccagaa tttagaaatc acctctttcc aacgatcttc gctcgcctcc cacattcccc
     2821 acatttgtga aatggtgcgg aagtggttcg gtttgccctc aagcggtttg aagaaactct
     2881 cgtccaatac cacttggctt gggtcataca ttgaataata cggctccggc actacacacg
     2941 gagtgtgcgg cccccagaag ttgatccacg caaagaacgg ttttttctca tcaagggagg
     3001 cttgaatgta ttttttcgcc tcgtcaatga taaaccactc tattgtctgc tcgcgactgc
     3061 cggaaagcaa accacagagt tcctgcacac gcaggtgtgg attgtcgcca aaataggctc
     3121 gactgacttc gggtgcgtca tagccctttt ccgccagcca ttcacgataa cggttggagt
     3181 gtgttggcgg ctgattaaac acgaggtttt tatacacttg gctgcccggg tagccatagc
     3241 cgtcaaagtt atgaccggcg atgccataat cttcgggaac ggattttgta ccaacgtgcc
     3301 atttgccgat cacaaaggag ttatagccct ccacgccggc aatattaggg ttttgttgtg
     3361 gaatttcgcc tgtgccgcct ttttcgccgt ttttgataat cccgtggctg gacggcatta
     3421 agccggtaaa cagcgaggtg cgagccggcc cgcagaccga agccggcgta aaggcgttgt
     3481 taaaccgaat gccgtctttc gccaagcgat ccaaattcgg ggtttttacc acctgatgcc
     3541 cgtaagtgcc gagcatatct ttacgcactt gatctaacaa aatatagatg atgttattca
     3601 taatgacctc tttaaggctt gttaataacc gataaattat caagtttcgg agatctgttc
     3661 ccctctttag caaagagggg atttttgatc tcgagccttt tccgttcttg gtatttttat
     3721 actaatgagg agaaggctca cattcattta attcaccgcc tttttgcctt tacattttgc
     3781 aaaaaacacg acacaaacca ccgcttgtag cacagcatac accgccagca ccattgccgg
     3841 attgccgtct ggtgaggcta aaccgagcgg agagaggaaa gcgtatagcg tgaataagcc
     3901 caacacgata gaagccactg ccagtggggc atattcccag ctggttaagt ccacattggc
     3961 gtggttgatt ttgttgtctt cgtatggagt cgcacgtttt aggaaaattc ctaaaatcag
     4021 cattaacgcc acatcgaaca cgaacaagcc agcttgcaca tacacgaagt tgatttttac
     4081 atcaaacacc caaacgatgc agaagtagag aataacgtgt gcgagtaagg caatgcgtgc
     4141 ggctttgcct gagacggttt tgttgaataa gccgatgaca aacagtgcca caatcggaat
     4201 gttcacaaaa ccggcgaaac gtttggtcag caagaaaata ccgtctgtgc cgaacatcag
     4261 taacggccca aagatcatcg taatcaccgc cattaccgca gagacttttt tcgcataact
     4321 tatcagttcc gcatctgtga actgtttttt gctgatagac ggcagtaagt ctttacagta
     4381 aatggttgcc gctgagttta agaacgagtt gaaggtactc aaaatcgccc cgaacagtgc
     4441 ggcaataaag aagccttgta gcacggttgg gaaagtttta ttcactaatt cagggtaaga
     4501 cacatcaatc ggtttcaagc cctcacctaa aatatggaaa ctgagtaagc ccggtaagtt
     4561 taagataagc ggtagcaata ataagaacag tgccgcaatt aagatccctt tttgaccggc
     4621 ttttaagtct ctcgccccca aggcacgttg cacaatggct tggttggtcg tccagtagaa
     4681 gaaatgcacc accataatac cggtgaaaat ggtcggccaa ggcactgcat cggtggcact
     4741 acccaccgca ttccattttt caacgtgagt agtggtgatg attttcaccc cttctgccat
     4801 actgccatta cctaaataga taagtgcaaa caccggcact aataatgccc caatgactaa
     4861 caagaccgca ttccaagtgt ctgacaccgc caccgctttt aagccaccga aaatggcata
     4921 aatcgcccca acaataccaa tcgcaatcac cgtataggta atcgctgccc catagcttaa
     4981 gccgaaggca gtttcaaggt tgaagatttt attgaaggca atcgcaccgg tgtaaagtgc
     5041 agtcggaatg acgatgaaaa gatagaacac caaaaacaag cccgacataa tcaaacgggt
     5101 ttggcggtcg aaacggtttt caaagaactc cggaatggtg gtataaccgt tgcggatata
     5161 tttcggcaac agataaagtg ccaagaagca aagcggaatt accgccggca cagtccacgc
     5221 aataattgag aaattaccgg cataagagtt ggcattcacg ccgataagtt gctcggtaga
     5281 aagggaggtt aagaccatcg aacagccgat aaccgtagca ctcaagccac gccctgccaa
     5341 gaaataacct ttagatgtcg aaagatcgtc gtttctggtt tttagccaag agatataccc
     5401 gactaatcca gttacaacca gaaaggtaat tattgttaat aacatattct tcacctcaat
     5461 atgactatat aaatgatata tcccattaga gacggcaata gcataaatct tatttttaac
     5521 gatagaatat gatgtttgtc ataatagata tgtgatggtg atcacaacta tgaataattt
     5581 atgacaattt aactgatttt ctttaattct cgccttaatc gaatggctgt ttcggtttca
     5641 caacctgcaa attcggcgat ttcacggtta gtccagtgat aattgggata acgttggtgt
     5701 aaataatgaa tactgttcat tacccgctct tgcgtttttt gataggaaac cattgataaa
     5761 cgatgctctg cgtcttgtaa ttctgtcgag agctgtttta acagagagat aattaaggcg
     5821 gaattattcg accaaaactc aatgaaattt aagggggtaa tacgtatcaa ttctgccggc
     5881 tgtaacaccc gagccgagca atggtagcga ttatcgccaa aaaaggttct aaacccaaaa
     5941 taatcgttgg ctttatatac cctcaccaag ctctctttac cattttcaag catatggtac
     6001 agccctatta atccgctttt taaaaaataa aattctctgg cgtgataacc ctgagaataa
     6061 atgacgactc ctttttctag atcagacatt acacttaatt ggcaagacat caattgttcg
     6121 ggggttggca tattgttcat tgattatcct tattatttta ttttttccat atatgattgc
     6181 gatcataatc ctttatttag aaaattttgc atacttatca cactttagga gatggattat
     6241 gacaatgacc gtgataatta ttttgatcat ttgtggcatt atagtcaata tcacttctgc
     6301 actatttggg attggcgggg gtgttttaat gatgccgatt ttacattcac tgtttcctga
     6361 actgcctctc caagtgattt ccgcctgctc tcttaccatt gtgattggtt cagccactat
     6421 caatttatgc ttattccacc atcaacagat aaaaatcaat cgaaaaaatg tgttgatttg
     6481 gtcacttgcg atgatgttag gcgtacaaat tgggtttgaa ctcagttttc ttttctctga
     6541 taacagcatt atcgctatct ttattctaac cctgctgaca ctttcattta aaaccctatt
     6601 tcacaaacca agagttaaag caatagtacc acctaaacca aaagaagcag tatctaatgc
     6661 cacaatgtgc agtttaggcg gtttaattgc aggtattacc ggcattggcg gcggttcgat
     6721 tatggctccg attgtcacgc aaatacgctc ggtttcaccg aaacaggttg cagtttatac
     6781 taactatatg atggtgattg gcggaatcgg caatttatat ggctacttat cccgcccttt
     6841 tgtgttgaat tcaaccttag caacttggca aatcggctat gtgaattttg caattgtcgg
     6901 caccgtagtg ataagttctc tctttactgt ctatttttca atgaaattac gcaatatctt
     6961 gagtcccgaa ttaactacta aattacttgg tgtaatccta ttcactattg cctgttatat
     7021 gggctttttg caatatttat tcacttaacc ataagttcaa tagattattg cttatgaggt
     7081 agtttttccc aagtaacttc attacgcaaa tacaccggtt ctatttcaaa agcagattgg
     7141 atattgcctt tttgaatctc agtttcagca atcgaaagca tatatcggct ggaaggcaag
     7201 gtaatatcac tgataacaag cggtagattt tgctcagaaa attgcgaata tgccgcccaa
     7261 cctgtgccaa ccaccacagt ctcttcactc atttggaatt gacttattgc gacttctggc
     7321 gaacagactt gttcagccac cacttcattc cattcttcac cctttcgttc aaattgagca
     7381 aagtaaactt cattcattcg ggcatcaatt aaggcaatta cctttgttgc acctaatttt
     7441 tggtatgctt cttctgccat tgcttttaag ttagaaacag ctaccaccgg caaattcgct
     7501 cccattgcca acccttgtgc cacacttaca ccgaccctca caccggtaaa actgcccggc
     7561 ccacgtccga atactaaata atttacttct ttgagttcga tattggcttg attaagtaat
     7621 tcatctacca tcggcaaaat acgttgagta tgggaacgag ggctgatttc atctaagaac
     7681 gtgatatttc cgttatactg taacgctaca gagcaagcct ctgttgcagt atctaaagca
     7741 agaatgctgg gtttcatcat atgtttagtt tgaataaatt aaatttgctt taaggttaaa
     7801 caaataaagg gcgaattata ttcgccctcg gttcaagaaa agattatttt gcaaaatttc
     7861 tgcgcttttc aaccgcttca gcaagtgcga ataacgcttt ttcactatct tcccagccaa
     7921 tgcagccgtc tgtaatactt tgtccgtaaa ctaacgcctc taaacctttg ccttcaatta
     7981 agtcttggcg accttctacc aagtggcttt caatcatcac acctgaaata aagtctgatc
     8041 cacctgcaat ttggttgcac acatcagcac aaacgtccat ttggcgtttg aactgcttct
     8101 ggctgttagc gtggctgaaa tcgatcatca cgtgtggacg tccgccggat ttctcaatcg
     8161 cagcacaagc cgctgcaacg gagtcagcat cgtagttggt tgcgctatcg ccaccacgca
     8221 aaataatgtg acagtcagga tttcctgctg ttgaaacaat cgcagaatgc ccgaatttag
     8281 tgaccgataa gaaatggtgt ggcgattttg cggaagaaat tgcatctaat gcaattttca
     8341 cactaccatt cgtgccgttt ttaaaaccta ccgcacagga taaaccagag gctaattcac
     8401 ggtggacttg agattcagtc gttctcgccc caattgctcc ccagctcata aagtcagcca
     8461 catattgtgg tgtaatcata tccaaaaact cgccggcagt cggcacgctt aaatcattaa
     8521 tatcagataa tactttacgg gcaatgcgta aaccatcgtt taaggcaaag gtttcgttca
     8581 aataagggtc gttaattaag cctttccaac caacggttgt acggggtttt tcaaaataga
     8641 cacgcatcac cacttctaag ttttggttaa ttttcggatc agcacgcatt gctttaattt
     8701 tttgtgcata ttctaatgcc gctttcgggt cgtgaatgga gcaaggtcca atcaccacta
     8761 ataagcgatc atccgcaccg tgtaaaattt tgtggattga ttgacgggtt ttagcaacgg
     8821 tttccgctgc aacatcactt gccggatagg cttccagtaa tgcaataggt ggtagtaatt
     8881 cttcaatact ggtaattctg acatcgtcat ttttgatata agacattgtg ttcactctct
     8941 aaataaaatg aa
//
LOCUS       DANMGB010000095         8944 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.095, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000095 DANMGB010000000
VERSION     DANMGB010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8944
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.095"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            54..1067
                     /gene="cas1c"
                     /locus_tag="PXG19_001669"
     CDS             54..1067
                     /gene="cas1c"
                     /locus_tag="PXG19_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL6066954.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1134..1427
                     /gene="cas2"
                     /locus_tag="PXG19_001670"
     CDS             1134..1427
                     /gene="cas2"
                     /locus_tag="PXG19_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL6066955.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1619..2654
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1619..1638
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2904..4379
                     /gene="rng"
                     /locus_tag="PXG19_001671"
     CDS             2904..4379
                     /gene="rng"
                     /locus_tag="PXG19_001671"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL6066956.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4533..6035
                     /gene="lysS"
                     /locus_tag="PXG19_001672"
     CDS             4533..6035
                     /gene="lysS"
                     /locus_tag="PXG19_001672"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL6066957.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
     gene            complement(6113..7186)
                     /locus_tag="PXG19_001673"
     CDS             complement(6113..7186)
                     /locus_tag="PXG19_001673"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL6066958.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
     gene            7454..8137
                     /locus_tag="PXG19_001674"
     CDS             7454..8137
                     /locus_tag="PXG19_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6066959.1"
                     /translation="MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDS
                     LTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVN
                     QLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPF
                     TIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEP
                     ESLEDIRSK"
     gene            complement(8174..>8944)
                     /gene="purU"
                     /locus_tag="PXG19_001675"
     CDS             complement(8174..>8944)
                     /gene="purU"
                     /locus_tag="PXG19_001675"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL6066960.1"
                     /translation="NICYKHQLNIIKNSEFVENETKRFFMRTELNGIFNDETLLTDLK
                     FTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHETLKS
                     LVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYIVLAKYMRVLNPEFVARYPNR
                     VVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYT
                     AEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL"
BASE COUNT         2681 a         1616 c         1978 g         2669 t
ORIGIN      
        1 aaatatattt aaataattat gatgtgagat taaagttaaa gggattttca accatgcgca
       61 aactacaaaa caccctctac attaccaccc aaggtagcta tttgcacaaa gagcgagaaa
      121 ccttggtggt ggagcaagat cggaagaaag tggcacagtt gccgattcat tccattgggc
      181 atattttttg ttttggcaat gtgttagtgt cgccgttttt aatgggattt tgtggcgaaa
      241 ataacgtaaa tttagcgttt tttaccgaaa atgggcgtta tcttgggcgg ttgcaggggc
      301 ggcaaagtgg taatgtattg ttacgccgag cccagtataa aaagtcggag accaaccctg
      361 ttcctgtggc tcgcaacatc attgcagcca aaattcaagc atctaagcgg gtgttacaac
      421 ggcaaattcg taatcacggc gaaaatgctg accttcaatc gacaattacc gcattaaatt
      481 acagcctgca acagttgaaa acagcagaca atttggattt gattcgtggc attgagggcg
      541 atgctgcggc tcgttatttt ggggtgtttt ctcatcttat caaagaaaat agcggtttcc
      601 actttgacgg acgtaatcgc cgcccacctc gtgacggtgt gaatgcgttg ctttcatttc
      661 tttatagcat tgtagggaaa gatattagcg gggcattgca aggcgtgggg cttgatcccc
      721 agattggctt tttgcatgca gatcgttcgg ggcgagatag cttagctcaa gatattttgg
      781 aggaatttcg agcgtggtgg gtggacagaa tggtgctgtc gctgatcaat cgagggcagg
      841 ttaagcctga tgattttgtg acggaagcca gtggtgcggt aacgctcaag cctgaagcca
      901 gaaaattact atttcaaacc ttgcaagcga aaaaacaaga aaaaatcatc cacccatttt
      961 tagaggaaga agtggaaatc ggcttgttac cttatatcca agcgatgtta ttggctcgtc
     1021 atttgcgtgg cgatttggca gaatatccgc cgtttttaat gcgttaaaat ctgcaaaatt
     1081 ttgttgaaat ttgaccgctt gtttatgttt tattcattga ggaattagca actatgctga
     1141 tgttgattac ctacgacatt tcatttgatg accccgaagg gcaggctcgc ctacgccgta
     1201 ttgctaagca ttgtttggat tatggtgtgc gggcgcaata ttctgtgttt gagtgtgatg
     1261 ttactcctgc tcagtgggta acattgaaaa ataaattatt ggcaacttac aacccagact
     1321 gtgatagttt gcgcttttac catttaggca gtaaatggag gaataaagtt gagcaccatg
     1381 gcgcaaaacc ttcagtggat atttttaaag atacgctgat tttataaatc gctagcctgt
     1441 agttctcata aaaatgtagc aaggttagcg aatctatatt gttctttaat aatcaaggaa
     1501 ttagaaaaaa taaggcacaa tatattggcg atatgctata ctttatccac tctctacaaa
     1561 acgttagcga ataaagggct aaaaagcctg atatttcaat acgttatctt atagggacca
     1621 gccacctacg cgtggctgcg aattgaaacc ctataacgag caatggcatt ttgatctacg
     1681 gtaaaccagc cacctacgcg tggctgcgaa ttgaaacttc ttgaatacct ccggagtcag
     1741 ttaagataag gccagccacc tacgcgtggc tgcgaattga aacctttttc aagaatcaag
     1801 attaagagat ccaaacaacc agccacctac gcgtggctgc gaattgaaac caccgctgct
     1861 acttcggtta tcggagtagt ttgcacccag ccacctacgc gtggctgcga attgaaacgt
     1921 ggcacagtaa cacgagcaga tgctgataaa cgcccagcca cctacgcgtg gctgcgaatt
     1981 gaaaccagca gccgttgtta ccgtggtgca atgcttgcgc cagccaccta cgcgtggctg
     2041 cgaattgaaa ctacacttat tgccataggg tagtagtaat cttttaccca gccacctacg
     2101 cgtggctgcg aattgaaact gcgatttttg gatttttcgg gcgataaatg ataccagcca
     2161 cctacgcgtg gctgtgaatt gaaactcgtg gctggttata caaagaaaag cattgttggg
     2221 cagccaccta cgcgtggctg tgaattgaaa cttaaatcta aagctaaagc tattttatta
     2281 attaaagcag ccacctacgc gtggctgtga attgaaactt taccgtttac cgattggatt
     2341 ttaatgctag aggcagccac ctacgcgtgg ctgtgaattg aaaccctaaa ttgccgtaaa
     2401 aatctgccat tagctacgcg cagccaccta cgcgtggctg tgaattgaaa caggggcgtg
     2461 taccgcaatc aattttaatt ataaccaagc agccacctac gcgtggctgt gaattgaaac
     2521 tttatctgtt gcggtcaatt gtatatcttg aatttgcagc cacctacgcg tggctgtgaa
     2581 ttgaaacctc gtcttgaatt ggaaaatcaa gggcgacaat aggcagccac cttcgcgtgg
     2641 ctgtgtattg aaacggtgta cccacaaatc ctatgttttc gccattggct gctaccttcg
     2701 catcaatata tattgaaata tcaatggcaa atttgtatgt tgttaattag actgattgca
     2761 tctgctatgt atcatagtaa tgacgaaaat attctatttt gcaaaaaata atcagaaatt
     2821 acccgcttgt tcgaactgag tttttgtttt ctaagatgtg aaatgataca ctttagatag
     2881 ttttaaaata tagagacagt aagatgagta gtacggaatt attagtgaat gttaccccaa
     2941 gcgaaacaag ggtagcgttg gtagaaaacg gaatattgaa agaattacat attgagcggg
     3001 aagctaaacg cgggattgtt ggtaatattt ataagggaag ggtgacaagg gtattaccag
     3061 gtatgcaatc tgcttttgtg gatatcggct tggagaaggc tgcttttttg cacgcttctg
     3121 acatcgtttc gcatacggaa tgtgttgatg aaaatgaaaa gaagcaattt ctggttaaag
     3181 atatttctga attggtgcgt gaagggcaag atatagttgt acaagtagtg aaagatccaa
     3241 ttggtactaa aggagctagg ctcactactg atattacgtt accatctcgt tatttagtgt
     3301 ttatgccaga aaatagccat gtgggagtat ctcagcggat tgaaagtgaa gaagagcgtg
     3361 ctcgtttaaa aagcttggtt gagccttatt gtgatgaact tgggggcttt attgtacgta
     3421 ccgctgcaga agaggcaact gaagaaagtt taaagcaaga tgttgaattt ttaaaacggt
     3481 tgtggcgtaa agtattagaa cgaaaaggga aatattccgc aaaatcaatg ctttatggag
     3541 agcttgcgct tgctcaaagg gtactgcgtg attttattgg tacacatatc aattcggtta
     3601 gaatcgattc aaagctaact tatgagcaag tgcgagaatt tttagctgag tttatgccag
     3661 aattaacgga ttgtgtcacc ctctataccg gtcagcaaac tttatttgat gcctatggtg
     3721 tagaaaaggc aatccaaaag gcattggata aacgggttga tttaaaatcg gggggctatt
     3781 taattattga gcaaactgag gcgatgacga ctattgatat taatactggt gcttttgtcg
     3841 gacatcgtaa ccttgcacat acgattttca acacaaatat tgaagcaata caggcaattg
     3901 cacaccagct acagttgcgt aatttaggtg gtattatcat tattgatttt attgatatgc
     3961 aagaggaaga acatcgtgag cgcgttttac aatcgttaca agaggcatta aaaggcgatc
     4021 gtgttaaaac caatgtgaat ggctttactc agcttggctt ggtggagatg accagaaaac
     4081 gtacaaggga gagtctagag cgaattcttt gttgcgattg ccaagcttgc caagggcgtg
     4141 gcacagtgaa aactgtagag acggtttgct atgaaattat gcgtgaaatt gtgcgtgtac
     4201 atcatttgtt taagacagaa aatattcacg tttatgcagc taaagatgtt gctgaatatt
     4261 taattaacga ggaaagccac gcattattgg ctgagcttca ggcgtttatc ggtaaaaaaa
     4321 ttgagattaa acttgagcca tattatcatc aagagcagtt tgatgtggtc gtgatgtaat
     4381 ctattacttg gttgaggcta aatagttagc ctcaatatcg ttagttacaa aaaatttaga
     4441 aaatctgacc gcttgtttcc tatccaaatt cctcaaaata acgtataatc gtccagtttt
     4501 atttatcctt ttttgaaatc taaggtaatt caatgtctga agtagaaaat caagaattag
     4561 atctaaacgg tgaaatgtta gcccgccgtg aaaaattaaa caaaatccgt gagcagggta
     4621 acgcatttcc aaatacattc cgtcgtgatg cgttagccaa agatctgcac gctcaatatg
     4681 atgcagtgga aggtgaaacc ttaaaagaac agaatattca agtgaaagtt gccggtcgta
     4741 ttatgttaaa acgagtaatg ggtaaggcat ctttctttac cattcaagat gtgagcggtg
     4801 cgattcagct ttatgtagct cgtgataact taagtgacag cgtttacgaa gaaaaagtca
     4861 gcctttggga tttaggcgac attgtgggcg tcgaaggtgc gttatttaaa accaaaaccg
     4921 gtgaattaac ggttcgttgc tctgaagttc aacttttaac caagtcttta cgcccgttgc
     4981 cggataaaca tcacggttta acggatttag aaactcgtta tcgtcagcgt tatttagact
     5041 tgatttctaa tgaagaatct cgccgtactt ttatgatccg ctcgcaagta gtttcaggca
     5101 ttcgcaaatt cttcttagaa agagacttta ttgaagttga aacgccaatg ttgcaagtga
     5161 tcccgggcgg tgcggcagcg aaaccgttta tcactcatca taatgcgtta gatgtggata
     5221 tgtatctgcg tattgctcca gagctttact taaaacgttt agttgtgggt ggttttgagc
     5281 gagtatttga gcttaaccgt aacttccgta acgaaggggt ttcagtacgc cacaatcctg
     5341 aatttacaat gattgagtac taccaagcct atgcggatta tcacgattta atggataata
     5401 ccgaagaact gttacgccaa ttagccttag atattcttgg cacaactgac gtaccttatg
     5461 gtgattatgt attcgatttc ggtaaaccgt ttgagcgtat tacgatgcac gatgcgattg
     5521 tgaaatatgg taacggcatt caacgtgaag atttagacag cttcgagaaa agtgtggaaa
     5581 ttgcgaaagg cttaggcatt gaaattcaaa aatcttgggg tttaggctcg gtagtcaatg
     5641 cgatttttga agaagtggca gaacatcaat taattcagcc aactttcttg atggctcacc
     5701 cggcagaaat ttcaccatta gctcgccgta atgatgaaaa cccagaggta actgatcgtt
     5761 ttgagttatt tatcggtggt cgtgaaattg gtaatggttt ctcagaatta aacgatgcag
     5821 aagaccaagc agagcgtttt gatgctcaag ttgcggcgaa agatgccggt gatgatgaag
     5881 caatgtttaa agatgaagac tttatcgtgg cattggaaca cggtctgccg ccaacagcgg
     5941 gtgaaggttt aggaattgac cgcttagtaa tgattttcgc taacgcccca tcaatccgtg
     6001 atgtaatttt attcccagcg atgcgtcaga agtaatcaga aatagaacaa aagcacactt
     6061 cggtgtgctt ttttgtatta caagcggtca aatttataat aaaaaatgca atttattttg
     6121 ctaatccggc tttaatcatc ggttcaaaaa agtcataatc aaccaaaaag gcatcgtgtc
     6181 cgaaatcgga gtgaaactcg tggaactcca aatttacgcc tgcctgttct aatttttgtt
     6241 tgctcttata cacgtcaact tgcttgaata gttggtcgct tgttaccgct acaaaagtgt
     6301 agttggcttt aatacgtttt agggcggttt cttcattttc atagccaaga gccgggtcgt
     6361 ataaatctaa tgctcggagt aaacggaggt aagtgttggc atcgaaacga cctaaaaatt
     6421 tcgtgccttg atagcttaaa taggattcca cttggaaatg gtcgccccaa atttgtcctt
     6481 gctgtttggt ttctcgtcca aaggctttag caagttgaat atcagtacgg taagtcagca
     6541 taccgagcat acgggcgatt tttaagccgt tatcaggtgc aatgccatca taatagttcc
     6601 caccgttaaa gtgtggatcg ttaataatag cttggcgcat aacgtggtta aaaccgatag
     6661 cctcggcact tagggtaagt gacgaacaaa gatttataat gttgcgaact ttatcagggt
     6721 aactaatacc ccactgtgtt gcttgcattc cgccgaaaga tccccctacc actgcgtgaa
     6781 gttgagggat ttctaaatag tccaataatg ctttttgtac attaacaata tcttgcactg
     6841 taataattgg aaacaaacta ccgtaaggtt tattggtttt agggttaatc gaagctgggc
     6901 cggttgtgcc tttacaaccg cctaatacat tactgcaaat aaagaaatat ttatcggtat
     6961 caaacgcaag ccctttgccg atgaaatctt gccaccagcc tttctcggtt ggtgagtcat
     7021 agtaaggctt agcatcaccg gtaagggcgt ggcaaagcaa gaccgcattg cttttctctg
     7081 catttaatct gccgtaagtc tggtaagcca ctgtgatagg ggacagttcg cctcctaatg
     7141 tgagtggtaa aggtacgtcc tcaaaaaggg taatctgctg agccataaaa atcctgtttg
     7201 caaaaaattc tgcttttttg accgcttgtt gtaatgaccg ttaaattagc ggtgttcatt
     7261 tcaattgtca agaattttta gacgtctaaa cgtctagatt tttaaacggc taaaatcaaa
     7321 attttattgc tgagaagata tttattactt aacaaataac atgaaataga ataaatttat
     7381 tgaacgatta gactattttg tttgtctcta atttacccat cttaaatagg gtagcaaaag
     7441 taaaggatct catttgaacc aaacgcgtga taggttagaa aaattgccac ttttccataa
     7501 aatgcagcag tttattatta aggcattgaa aataattgca attttcccct tattgggaat
     7561 agctatatta ttagtggttg attcacttac aagttatatt gtgagggata aaatttatac
     7621 agatagtaaa cagattcctt accgggagta tgcagttgta ctcggtacgg caaaatttta
     7681 ctctaaagat gtgattaacc aatattataa atatcgtttg gaagccgcta agcaattagt
     7741 ccaagaagga aaggtcaatc agcttttgtt aagtggagat aataaaacgc cgtactataa
     7801 tgagccaaaa acaatgacaa gtgatctact taaaatgggg attgcgactt caaaaattaa
     7861 gcaggattat gcggggtata ccacttttta ttcaataatt agggctaaaa aagtatataa
     7921 attaccgcca tttacgatta tctcccaaaa attccactgt gaaagggcat tgtttattgc
     7981 aaaatttagg gatattgatg caatttgtta tgccgctaca tatccagagg gggcttatca
     8041 ggtacgaatg cgggaaattt tagccagatc ggcaatggtt tttagtttgt tgataggtaa
     8101 agagcctgaa tcattggaag atatccgttc taaatgagat agccggtcag ataatgttga
     8161 ccggctattt tgcttataaa ataatggttt tgtttttata tacaaatact ttgtcagcaa
     8221 gcactaattc taaggcttgg ctaagtacgg ttttctcgac atcacgtccg gcacgcatca
     8281 tagcctctgc ggtgtaggtg tgatcaacat taatcacatt ttgcataata atcgggcctt
     8341 catctaattc atcattcaca aaatgggcgg ttgcaccgat aattttcact ccacgttcgt
     8401 atgcacgatg ataaggtttt gcaccaatga aagcgggtaa gaacgagtgg tgaatattga
     8461 caactcggtt tggataacga gcgacaaatt ccggattcag cacccgcata tatttagcca
     8521 acacaatata atcaggtgaa tattcatcaa ttttttccgc taataattta tcgtgttcca
     8581 ctcgggttaa attttcgtgg ctgactaaat ggaatggaat atcgaaacgt tcaactaaac
     8641 tttttaatgt ttcgtggttt ccaatcacgg cagcaatttc tacatctaat ccaccatagt
     8701 aatttttcat cagtaagtca cctaaacaat gtgcttcttt ggtaactaaa ataacgatac
     8761 gttttctttg tttagggagt aatttatagc ttgagccttc aggtaaggta aattttaaat
     8821 cagtgagtaa ggtttcatca ttaaaaattc cgtttaattc ggtacgcata aaaaaacgtt
     8881 tagtttcatt ctcaacaaat tcagaatttt taataatatt taattggtgc ttatagcaaa
     8941 tatt
//
LOCUS       DANMGB010000096         8808 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.096, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000096 DANMGB010000000
VERSION     DANMGB010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8808
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.096"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..578
                     /locus_tag="PXG19_001676"
     CDS             <1..578
                     /locus_tag="PXG19_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6066961.1"
                     /translation="RKFIAVQYPEEIDIKSKNGKVAKQFCQRKNLPLYITEISKERIR
                     RAGKQILQNNPENRPLDVGFKVFKLTESHFKQWQSPTSENLADQLEMFIDPVSEKADT
                     QAVLYELLLRLGLKLTAKVRLENKVFWVEENGLIFALLLNAADEEIIQTVIAQQPKKV
                     IALDRLFNGNDARKKNTELQMQDAGITFFVI"
     gene            588..3224
                     /locus_tag="PXG19_001677"
     CDS             588..3224
                     /locus_tag="PXG19_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6066962.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3356..5788
                     /gene="gyrB"
                     /locus_tag="PXG19_001678"
     CDS             3356..5788
                     /gene="gyrB"
                     /locus_tag="PXG19_001678"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL6066963.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5841..6803)
                     /gene="cmoB"
                     /locus_tag="PXG19_001679"
     CDS             complement(5841..6803)
                     /gene="cmoB"
                     /locus_tag="PXG19_001679"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL6066964.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(6900..8663)
                     /locus_tag="PXG19_001680"
     CDS             complement(6900..8663)
                     /locus_tag="PXG19_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL6066965.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
BASE COUNT         2799 a         1703 c         1878 g         2428 t
ORIGIN      
        1 atagaaaatt tattgcggtt caatatcctg aagaaattga tatcaagagt aagaatggaa
       61 aagtagcaaa gcaattttgc caaagaaaaa atttaccact atatataact gaaatttcaa
      121 aagaacgtat tcgccgtgcc ggaaagcaga ttttgcaaaa taaccccgaa aaccgaccgc
      181 ttgatgtagg ttttaaagtc ttcaaactga cagaaagcca ttttaaacaa tggcaatcgc
      241 ccacatctga aaatttagcc gatcaacttg aaatgtttat tgatcctgtt agtgaaaaag
      301 cggatacgca agccgtttta tatgagcttt tattgcgttt agggttaaaa ctcacggcaa
      361 aagtgcggtt ggaaaataag gtgttttggg tggaagaaaa cgggctgatt ttcgccttgc
      421 tgttaaatgc agccgacgaa gaaattattc aaactgttat cgctcaacaa ccgaaaaaag
      481 tcatcgcttt agaccgttta ttcaacggca atgatgcccg gaagaaaaac accgaattgc
      541 aaatgcaaga tgccggcatt acgttttttg tgatttaagg agaaaaaatg gaactccaat
      601 ttgaaacctt agagtatcaa ttacaagccg ttaatgccac agtaaatttg tttgtcggac
      661 agccgaatgc cgcaactgaa ttttcactca aagcccaaaa tgatatgcgg tttgtgccga
      721 atttaggctt gcagattagt gatgagcagt tacaacagaa tttggctaat ctgcaaaaca
      781 ggcaaaaaat cgaccgcact ttgcttgtcg aacagggaaa aaattttacc gtggaaatgg
      841 aaactggtac agggaaaacc tatgtctatt tacgcacgat ttttgaatta aaccgtcaat
      901 acggctggca aaaatttgtg attgtcgtgc cgagtgtggc aattcgtgag ggagtgttgc
      961 atacgttgga aactacaaaa agccatttta atacggtatt tgataacccg agcgtcaatc
     1021 aaaaatttga atataaaagt aaccaaactt cacgcttaaa atcctttgct agtgctaatc
     1081 atattgaaat tttagtgatg aatattgatg ctttcaccaa agaaagtaac gtgattaata
     1141 ccgtgaatga aagcggtgat gctccgattt tctatattca acaggcgaat ccgattgtga
     1201 ttattgatga accgcaaaat atggaaacgg agattcgccg taatgcgatt gagagtttaa
     1261 gtccgctttt cactttgcgt tattctgcca cccataaaaa tgcgtataac ccgattttta
     1321 gcctcaatcc ggtgcaagcc tatgaaatgg gattagttaa acaaattgag gtagatagcg
     1381 tattggcgga aaatgaggta aatggagctt atctttccct caaagagatt aaaacagggg
     1441 caaaaagctg gtcggcaaaa atcgaaattt tatttaacga taaaaaagcg atgaaaaaga
     1501 aagtgattag cgtgaaaccg aatcaggatt tgtatgagct ttccaaccaa aatgaaatgt
     1561 atcgttcagg gtttatatta agcggaatgg ataccgatag ccaaatggtt agcttctcca
     1621 acggcacaca aatttttcaa ggggcggaac attcccaact taaagaagat gtgcaaaaaa
     1681 tgcagattcg ccgcactatt ggcgagcatt tgcaaaaaga aaagaaatta cgaccgcttg
     1741 ggatcaaggt gttgtctttg ttctttatcg ataaagtgga taattatcgc ccttctgcac
     1801 aaagccctac ggggggaaaa tttgcaaaat ggtttgagga aatttatttg gagctagcca
     1861 aagaagagcc tcaaggcgtg cataacggtt atttctcaca ggataaaaaa ggcgtagcaa
     1921 aagatactaa tggcacaacg caagcggata acgagactta tcaactgatt atgcgggata
     1981 aagaaaaatt gctttcgctg gagaatccgt tacggtttat tttctcgcat tctgccttaa
     2041 aagaaggatg ggataatccg aatgtgtttc aaatttgtac tttaaacgat actgcaagcg
     2101 aaatgaaaaa acgccaagag attgggcggg gcttgcgttt gcctgtgaat caacaaggat
     2161 tgcggattta tgatcgtcat ctaaatacgc tgacaattat cgcaaatgaa agttacgaac
     2221 aatttgccgc cacattacag cgtgaaattg aggaagattg tggtgtacag tttgccaaaa
     2281 gcaatgttaa aaaacgggaa gataaaaaag ccgttcgcta ccgtaaagat ttcagcttac
     2341 atccggaatt tgcggcaatt tgggaacgga ttaaacacca aaccacttat cgggtagatt
     2401 tcagtaatgc ggaattgatt gaaagtgcgg tggaaaaaat ccgcaaaatg cccgatatcg
     2461 aggcgacaaa aattaagcat tccaaagtga aattggaaat gaatgaaaca gggatttcaa
     2521 ctaattatcg ctcatctaat gaaacagcgg taaatacaca atgggcgata cctgatttat
     2581 tgagtgagat tcaaaagaaa accgggctga cgcgtgcgac cctttgcaaa attttacaaa
     2641 aatccgaccg cttgcaagaa gtcttccgca atcctcaacg ctttattgat ttaattgcag
     2701 agaaaatcaa ccttgcttta caacaaatta tgacagacgg ggtggaatat cacaaaattg
     2761 ccggaaaaac ctatgaaatg acgttattcg gcgattttga tttttacctc aatcaatata
     2821 cttttgaagt tcaagataaa acaaaaacga tttatgaaga ctatattgca ctggattccc
     2881 aaacagaaaa tatcttcgcc cgacattgtg aatctagtga gcaagtggag ttttatttta
     2941 aattacccaa acgttttaaa attccaacgc cattaggcag ctataatccc gattgggcag
     3001 ttgtgtttaa gggagaaaat aaaatttact tggttgccga aacgaaaaat acaggcaaag
     3061 gtattcaagc aggagtagat gaagaaaaat tagatgaaag tgaacgaatg aaaatcgact
     3121 atgcccgtaa gcatttcaaa ggcttacaga gagattataa ggatttggat tatagggttg
     3181 tacagaaagt ggaggagctg tctgcggagt attgtaaaat ttaatctgtg gtcttgtaga
     3241 attgagatag actgcaattt caactaaaat ttaaccgctt gttttgcgat acttttacgc
     3301 atttttctgc tataatcggc acaatttttt cgatttcaaa ttagtaggaa taagaatgtc
     3361 tgaacaaact caagcaacaa gttatgattc ttccagtatt aaggtgttac gcggcttaga
     3421 tgcggtgcgt aaacgcccgg gaatgtatat cggcgatacc gatgacggta cgggcttaca
     3481 ccatatggtg tttgaggtgg ttgataatgc gattgacgaa gcattagccg ggcattgtaa
     3541 agacattatt gtcacaattc attccgataa ttcggtttct gtgcaagatg acggtcgtgg
     3601 aattccggtg gggattcacc cggaagaagg cgtttcggca gcagaagtca ttatgactgt
     3661 tcttcacgca ggcggtaaat ttgacgataa ctcctataag gtttccggcg gtttgcacgg
     3721 tgtgggcgta tcggtggtga atgcactttc ctctaaatta caactcacta ttcgccgtga
     3781 aggacacgtt cacgagcaat tctatagctt aggtgagcct gatgcacctt tagcgattat
     3841 cggcaatacc gaaaaaacgg ggacgtcggt tcgtttctgg ccaagtttgg atattttcaa
     3901 aaataaaacc gaatttgaat ataaaattct gtctaaacgc ttgcgtgaac tatcattttt
     3961 gaattcaggc gtttcgatta aattaattga tgaacgagac ggcaaagaag agcattttaa
     4021 atatgagggc ggtattaaag cctatgttga gtatttaaac gaaggcaaaa ctcatattca
     4081 caatacgcca ttctatttga ccactgagaa agacggcatt ggcgtggaaa tttccctaca
     4141 gtggaatgac agttacaacg aaaatgtgta ctgctttacc aataatattc cacagcgtga
     4201 tggcggtacg cacttagccg gtttccgtgg ggcattaact cgtgcgttga aaaactatat
     4261 ggataacagc ggggtattga aaaaagccga tgcgaacatt gatgcctcag gtgatgatgc
     4321 ccgtgaaggt ttagtagcgg tgatttcggt gaaagtgccg gatccgaaat tctcctcaca
     4381 aaccaaagat aaattggtgt cgtcagaagt gcgtggagca gtggaaagct caatgaatga
     4441 ggctttatcc gactatttag ccgaaaatcc ggacgatgca aaaaatatcg ttaccaaaat
     4501 tattgatgca gcccgtgcaa gagaagcagc tcgtaaagcc cgtgaaatga cccgccgtaa
     4561 aggggcgtta gatttaggcg gcttaccggg taaattagct gattgtcagg aaaaagatcc
     4621 ggcgttatcg gagctttact tggtggaggg tgactctgcc ggtggctcgg caaaacaagg
     4681 gcgtgaccgt aaaaaccaag cgattttgcc gttaaaaggg aaaattctga acgtggaaaa
     4741 agcccgcttt gataaaatgc tttcttcaca agaagtagca accttgatta ccgctttagg
     4801 cacaggcatc gggcgtgatg attataattt ggaaaaatta cgttaccaca aaatcattat
     4861 tatgaccgat gcggacgtgg atggtgcaca tattcgtacg cttttattaa ctttcttcta
     4921 ccgtcaaatg ccggagctga ttgaaaacgg ctatatttat attgcacagc caccgcttta
     4981 taaagtgaaa aaaggcaagc aagagcgtta tattcaagat aacgatgaaa tgtcgcaata
     5041 tgaaattgat attgcattag aaggtgcagg cttatatgtg agtgaagatg ctccagcgtt
     5101 aagtggcgta gcgttagaga acttaattgc ccaatataac ggcgtacaaa aattaattga
     5161 acgtttaagc cgtcgttacc caacattatt acttaacgaa ttaatttatt caaaaccgct
     5221 ttcggtggaa tttgcaaaaa atcaagcaaa tatgaccgct tggagcgagc aatttgtcgc
     5281 tacattgatg gcaaaagagg tgggcggcag tttctaccgt attaatacct tgttcaatga
     5341 agaacgccaa atttatgagc cggaaattat tgtgactaca cacggtatgg acagtaccta
     5401 tcgtttagat tacaacttta tcaacggtaa tgaatacgct cgcattgtgg cattaggcaa
     5461 cgagctgaac gatttactat ctgattcagc ctatgtggtg cgtggtgaac gtcgccaaga
     5521 aatcagcagt tttgctgaag ccttagattg gttggtgaaa gaatctcgta aaggcttaac
     5581 tattcaacgt tataaagggt taggtgagat gaatccggaa caattatggg aaaccacgat
     5641 ggatccggtg gctcgtaaaa tgctacaggt caatattacc gatgcgattg cggcagataa
     5701 actcttcagt acgctgatgg gcgatgaagt tgaaccacgc cgagatttca ttgaaactaa
     5761 cgctttgtat gctcagttag atatttagtt aaaaaatccg catttgacat gcggattttt
     5821 tattctctta aactagcatt ttaagcattc gctaaaatca ccgcccgctt cggagcaggg
     5881 tagccttcaa tggttttgct atgatcgttt ggatctaaaa aatccactaa actttcattt
     5941 tccaaccaat cggtttttcg ctgctcttct agtgtagtga ttgcctcatc aacacaacgc
     6001 acatttttaa agccgacttt ttccagccaa ttaatgagtg cagcaacaga aggaataaaa
     6061 tagatatttt tcattttcgc atagcgatca gccggcacta aaacatcatt aatatcgcca
     6121 tcaatcacca gcgtttctaa caccaattca ccgcctctga ctaattgggc tttgagttga
     6181 gaaagatgat caagcggtga tttgcgatga taaagcaccc ccattgaaaa cacggtatca
     6241 aaagcagcaa gcggttgcat ttgctcaata ccaagtggaa tcagattagc ccgtctatca
     6301 ttccctaaga gtttccgcac tgcctcaaat tggcacagga acagctcggt cgggtcaata
     6361 ccaactacca tttttgcccc ttcgcctacc attcgccaca tatgataacc gctaccgcag
     6421 ccgacatcta aaatggtgcg gtcttttaac ggtgcaagat gcggaagcac acgatcccat
     6481 ttaaaatcgg aacgccattc ggtatcaata tgaatcccgt gtagatgata agggccttta
     6541 cgccacggca ttagttgctt taaatggtgg gtaatttgct tgacttcccc ctcagataaa
     6601 ggcttgcttg aaatagactc aaccttgtct tttagattga tacaagcggt cgaatttggt
     6661 aaaaaatctg caacttttgc ccacttggca tagtcagcgt gggtggtctt ttcccattgt
     6721 ttgagttgta agggtaaggt ttctaaccaa gcagaaaggt cggttgtggc aatttgttga
     6781 taaaaaggac gaaagtcaat cattttgaaa tttatgtcta ggggagagac ctatgccctc
     6841 ccgaaaggta gtaaatagaa aggacaggca cagaacctac ccctacgaaa aatataaaat
     6901 tatctcgcaa tcggatttac tttcgctttt tgcactttgc gataagcgtt cagtaatttc
     6961 tgatgtgcag tcatattttc aagcgattcg tccgatgcag ttaaaccgtg gaacgggtta
     7021 ccgccttgga ttgcacccca agcagcttca accgcttgtt taccgtacat tttctcaaac
     7081 accatacgat attgttccga atcacgctct tcatctaaga acaactcaat cgattggatt
     7141 aagcagcggt aataattgtt acgttctgct gagaatacgc ttgcattcat attcgctgtc
     7201 cagtttgccc agtctgaggc ttgctctaag ttacctaaag ctaaatgcag catcgattta
     7261 agctcaccga tacgcaatgt ttgcattgca gagcctttct ctgccaccac gccaataaat
     7321 tcacgcacac gggttaaatc atcaatgctt tgctcatcta attcatcaag cagttcttgg
     7381 taagtttcag catcgtgatg gaaatgtggc aaatctaaca agatttcacg ccaatccata
     7441 cccatattgt tattggcata gaccaaatca tcgcttggat agatattcga catacccggt
     7501 gcaagaatac ggcaagcgta cacacctaaa tgctcataat ccataatata cacaggctga
     7561 ttatgcttgt tgaaaatcgc catcatatta ttaaattctt gctccgttgt gccggagaag
     7621 tcccaatgca cgaacggata atccgcatca cgtttgaaaa gatcccacga aattagaccg
     7681 cttgaatcaa taaagtgtgt ctcaaggttc gcatgatctg ctacatcttc attattaaat
     7741 gaaggtgggg caaacacatc taaatccttt aagctacggc cttgtaataa ctcggttacg
     7801 gtacgttcaa acgccacttg gaaattcggg tgtgcaccaa aagaggcaaa acaagtaccg
     7861 ttatttgggt ttaacaagat cacacaaata actggaaatt ctccgcctaa tgaagcgtca
     7921 tagcataaaa tcgggaagtc ttcttgctct agtttctcga tagaggcttt gattgtcgga
     7981 taaccgtcaa tcacactttg cggaatttcc ggcaagctga ttgcctcagt aataatacgg
     8041 tttttgacaa aacgctcgaa cacttcggat aagccctgca ctcgagcttc attttttgtg
     8101 ttgcctgccg acataccgtt tgaaacaaac aggttgccga taatgctttg cggaatgtaa
     8161 accgtttcat tgtcagattg gcgaacgtaa ggtagggtaa caattccacg atcataattt
     8221 cctgattgta aatcaaccaa taattccggc gtgatttcac cattcggatc aaaatattcc
     8281 cataaaaact cgtccatcat ctccattggt ggaatggctt catcatcaat cggaaaccat
     8341 ttttcggttg gataatgcac aaattcacta ttagcaatct cttgacctaa ataaaaatcc
     8401 gcccagaaat agttggtaga taaacgctca aaatactcac ctaatgcaga ggcaagagcg
     8461 gcttttttgc ttgctccctt accgttagaa aaacattgcg gacagtctgc atcacgaata
     8521 tgcaccgacc acacattcgg aacaggattt aaccaagagg cttcttcaat attaaaacct
     8581 aaggttttta atttatgctg aaaggtcgca atgctgtctt caagtgcagc atctttaccg
     8641 gtaataaaag tttgttctga catgataata cctttaactt gtcgtaaaaa tggcaacatt
     8701 ctagcaaaaa tccccataga taagtaaatt ttttgtgaaa tttctgctga aagaacagat
     8761 ttcaaaactt agaaaaaatg attacaagcg gtcaaatttt acttgaat
//
LOCUS       DANMGB010000097         8779 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.097, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000097 DANMGB010000000
VERSION     DANMGB010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8779
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.097"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(100..1191)
                     /gene="mltC"
                     /locus_tag="PXG19_001681"
     CDS             complement(100..1191)
                     /gene="mltC"
                     /locus_tag="PXG19_001681"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL6066966.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1208..1477)
                     /locus_tag="PXG19_001682"
     CDS             complement(1208..1477)
                     /locus_tag="PXG19_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL6066967.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            complement(1481..2626)
                     /gene="mutY"
                     /locus_tag="PXG19_001683"
     CDS             complement(1481..2626)
                     /gene="mutY"
                     /locus_tag="PXG19_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL6066968.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            2710..3102
                     /locus_tag="PXG19_001684"
     CDS             2710..3102
                     /locus_tag="PXG19_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6066969.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3103..3972
                     /locus_tag="PXG19_001685"
     CDS             3103..3972
                     /locus_tag="PXG19_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6066970.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            3988..4701
                     /gene="sfsA"
                     /locus_tag="PXG19_001686"
     CDS             3988..4701
                     /gene="sfsA"
                     /locus_tag="PXG19_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL6066971.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            4762..5283
                     /gene="hslV"
                     /locus_tag="PXG19_001687"
     CDS             4762..5283
                     /gene="hslV"
                     /locus_tag="PXG19_001687"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL6066972.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            5540..6865
                     /gene="hslU"
                     /locus_tag="PXG19_001688"
     CDS             5540..6865
                     /gene="hslU"
                     /locus_tag="PXG19_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL6066973.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            6941..7819
                     /locus_tag="PXG19_001689"
     CDS             6941..7819
                     /locus_tag="PXG19_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL6066974.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(7889..8605)
                     /locus_tag="PXG19_001690"
     CDS             complement(7889..8605)
                     /locus_tag="PXG19_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6066975.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
BASE COUNT         2609 a         1854 c         1763 g         2553 t
ORIGIN      
        1 agcttgcaac gtcaaacgtt tttttgcaaa tttaaaaaaa ccgctgctca aatgtgcttt
       61 ttttatactt ttcggctaaa aaacagcata attcacacat taacgaatat tgcgatattt
      121 ctctctggcg gtggttactt ttcttaaata atttctagct tgagaagatg gatgagcagt
      181 ggttaaaatt cgataaaccg catcagacga aagatcgtta attctatcaa tcgcagagta
      241 tcggtctgaa tcaaacactc gtaataccgc acctgctccg ctattgtatg cagaaatcat
      301 tgcatagcgt ttagccacag gatcttcaat tccatctaag tattcatcac gcaaaatagt
      361 caaataaagc gtacctgcat caatgttatt tgatggatta taaagatatt cacgacttgg
      421 ctgccctccc atacctttac gggcaaaaat atcacgcccg gcggtacgag gtacaacctg
      481 cattaagcca atcgcattgg catagctgat ggcataaggg ttgaatgctg attcgacttc
      541 cataatccct aaaatcaaac ttggctcaat accatactgc ttcgccattt tacgcaccag
      601 cggtaaatat tgtctggcac gtacttcaat gtgtcctgcc accattttaa tcgttacaaa
      661 gctcacagtt tgaccatttt tcaaacggcg tgtttgcacc ttattttgca acaaataagt
      721 cgcaaaatca ttggcgatgg caacattggt aatatttcgc ccgaattgat cttcaacctg
      781 tccgtttagg aaagggttag agctaatcgg tgcatcgcct gaggcaaata aatcaatccc
      841 tttcgggtct ctgcccatta ataaagtatg aataatcgaa ttgcgtagat gattctgatt
      901 ccctaaagtc tcaatcgtaa tcaccccttc ttcaaacgaa atatggctac gggtgtaaaa
      961 cttatccgta tatttcacat aatctttctt actggcaact aacagctcgt tacttcccca
     1021 aatatcatca atattgtgag aaaactgccc tgccaaaata tccaaaccat tggtatcttt
     1081 agaataatct actcgggtag attttggctt cttagtcgat ttattgctcc cacaagcaat
     1141 aagaaacgga ataattgcca acatcggcaa atatttagca tattttttca ttgtgattta
     1201 acctttatta ttcgaccggc ttatagcctt cgatgatgat ctctttacct tcaaataaaa
     1261 aattgaccat ctcttgttcg agcagtttac ggtgttcggg gttcatcata ctgagttttt
     1321 tctcattgac gatcattgtc tgttttttaa tccactcaga ccacgcttgc ttgctgattg
     1381 agtcaaaaat acgcttaccc agctcccccg gataaagttg aaaatctaaa ccttctgcct
     1441 cttgttttaa atattcgcaa aatacggtac gagccataat ttaatcctta atctcatttt
     1501 tcacactgaa tgccagctca tctaaaatac gtttaaccgg cgttgctaaa cccacttcgt
     1561 tatgttggtg caaatcatac caataatccg catttgaaga taccttagaa agataatttc
     1621 ctgctttttc ttcgacaaca agcggtgaat tttcacttgt ttttttcaaa tcggtttcta
     1681 ctaaaaccgg ggtaatatcc aaatgaaaat ggctaaaagt atgcctaaat gcagttaatt
     1741 gctgtgaaat ttgcaaattt tgcataaaat cagaccgctt gagagcctct aagctctcaa
     1801 attgcggaaa cacaaataag cccccccaaa tgccttttgc ttcccgtttt tgtaacagca
     1861 ctttcgagcc gcttttcagc actaaaaaat aggtttgacg ctccggcaag gtttttttcg
     1921 gtttcttggc aggaaagcta tcccacgctt gcattgcatt cgttttacaa ttttcttgta
     1981 gcgggcagag caagcactta ggctttgtac gggtgcaaat catcgcccct aaatccatca
     2041 tcgcttggtt aaagtctgcc acttgggtat caggcgtcac actttcgctt aattgccaaa
     2101 ggcgattttc caccgctttt tcacccgccc agccttctac tgcaaaatag cggcttaaca
     2161 cccgtttgac attgccatct aaaatcgggt gtggggcatc taacacagaa gacaaaatcg
     2221 cccctgcagt acttctgccc actccggtta atgccaacac atcatcaaat cgggtaggaa
     2281 attcaccgcc aaactcatct cgaatttgaa ttgccgcttt atgcaaattt cttgcccgag
     2341 cgtaataacc cagccctgtc cacaaatgca atacttcatc aatcgaggca ttagctaagt
     2401 caattacggt gggaaatcgt tccataaaac gtgcaaaata aggaataacg gtcgctactt
     2461 gagtttgttg caacattacc tccgacaacc aaacctgata cagcgtttta ttttgctgcc
     2521 aaggtaaatg tttccgccca tattgctcaa accaagctaa aacagctttg gcaaacggat
     2581 cagaagcttt tgctttcgct aaaggaaatg gggaattgct gttcattaaa aatcttgaaa
     2641 tccgaaaaat aaattatcat actgcaagcg gtcagtttta ccaaaaattt tacacattaa
     2701 ggaaaaaaga tgaaatcgcc cattttaggt ttccaccaca ttgcattaat tgtttccgat
     2761 tacgaaaaat ccaaacattt ctacacccgc attttagggg cagagatcat cgcagaaacc
     2821 taccgagagc aacgtgccag ctataaatta gatttacgct ttaaagatgg ctcacaaatt
     2881 gaattattca gttttcctga aacgccgcct cgtttcacct cgcccgaaac ctgcgggctt
     2941 cgccatttgg catttcgagt ggaaaatatt gaatatgcca tcgcattttt agaacaacat
     3001 caattaccgc atgaagggat ccgaattgat gagatcaccg gcaaacgctt cacgtttttc
     3061 cgagatccgg acgatctgcc gttagagttt tacgaggtct aaatgttata tttactgatt
     3121 gcaaccctga tttgggcgag ttcattcatt gtaggtaaag tggcgatttc agcctttgac
     3181 cctgtccaaa ttatgcaaat tcggctgacg ttagcggcgt ttatcgctct gccgtttttt
     3241 attcctgcgt ataaaaaaat ccagaaaaat cagcacatta aagtctggct gattagtttt
     3301 ctcacttttc ctctgtacgt gatcttacaa ttttccggct tgaaattaac ttccgcagca
     3361 agtgccgtgg cactactcgg gctaaacccg cttttaactg tgttagtcgg ctatttttgt
     3421 ttcaaaaaac aggcaaccag gctcgatttt atcctaagtt tatttgcctg cttggggatt
     3481 ttaattatgg catcgggtag cgatgatagc ggttcaatca atgtattagg attattgctt
     3541 gtaaccttag gcagtttaag ttttattgtg ggaatgtacc tcagcaaaga gattctgcaa
     3601 tcagtaaaag tgatcgattt aaccaagatc atgctggtgc aaggggcaat taccgcctta
     3661 cctattacct tactctttgc agaaaattgg caactgccaa ccagtctctc agcatgggcg
     3721 agcgtagcat atttaggcat tatttgtacc agcttggcaa tattgttatg gaacaaaggc
     3781 atcagccaat cttcgcctat tcttgcaggt attctactcg cacttgaacc ggtattcgga
     3841 ctgctaatgg cattggtctt tttatcagaa cagctcagtt tagtgacttg ggttgggatt
     3901 attattgtta tttgcaccgc cttactctcc gttttgctac cgatgatgaa aagatacaag
     3961 cggttaattt aacaggattt tttgcaaatg aaatttcccc ctctttccca cggcatttta
     4021 cttcgccgtt ataaacgttt tcttgccgat attcagttgc caaatggcga acaaattacc
     4081 ctccattgcc caaataccgg tgcgatgaca ggctgtgcca accccggtga tacagtttgg
     4141 ttttccacct ctcataaccc caaacgtaaa tatgctcaca cttgggaact aacccaaacc
     4201 caagcggggg attttatttg tgtcaatacc ttgagagcca atcagcttgt acaagaagcc
     4261 ttggaaaatc aatggattag cgagcttgcg gattatcagc acattctgcc tgaacaaaaa
     4321 tatggcagtg aaaacagtcg gattgatttt ttgctcaaat cggaccttct gccggattgt
     4381 tttgtggaag tgaaatctac caccctttta accgaaaacg gtgtgggaat gttccccgat
     4441 gccaaaaccg agcgggggca aaaacatttg cgggagctga cgaaaatcgc tgaacagggc
     4501 ttacaagcgg tcattttttt cgctattttg cacacaggta ttgaacggtt tgaagtggca
     4561 aagcagatag accccaaata tgccgaatta ttcgctcaag ccattgcaca aaaagtgcag
     4621 gttctctcct ataaaatggc aatttcattg gaaaacgggc aacctattgc ggcaacctta
     4681 acaaagaaat gtgagtttta agcttgaaaa cacacagcat atccccatat aagccaaagt
     4741 ttttaaaaag aaggatttag tatgacaacg attgtatgcg tgcgtaaaga cggaaaagtg
     4801 gctatcggtg gtgatggtca ggcaacgctt ggaaattgta tcgagaaagg cacggtgcgg
     4861 aaagttcgcc gtttgtataa agacaaagtg gtgacaggct ttgccggctc gaccgctgat
     4921 gcctttattt tgcgtgattt attcgagaaa aaattggagt tacaccaagg gcatttagtg
     4981 aaatcggcag tggaactggc aaaagagtgg cgtaccgagc gtgctttacg ccgtttagaa
     5041 gcgatgatga ttgtcgccaa tgacagcgag tttttattgg tttcaggttc gggcgatgtg
     5101 attgagccgg agcaagatgt gctggcgatt ggttcaggcg gtaactatgc gaaagccgct
     5161 gctcttgcgt tattacgcac cgaaaataat ttatctgcaa aagaaatcgt tgcggaagcg
     5221 ttaaaaatcg ccggcgatat tgatatttac agtaactaca atcacgtgat tgaagaagtt
     5281 tagttaaata actctctccc cttgtgggac aaatgtttac atttgaacgt tggctttgcc
     5341 aacggctcca caggagcgag cgtagcgagt attgagaccg aaaaatattt cgttcagaaa
     5401 tatttttcag agagaggggt taatgcaaaa cgtttaagaa aaaagaccgc ttgttaccct
     5461 ctccctgatt tttcttctga acaaagaaaa atctgtccct ctcccacaag gggagagggt
     5521 aattaattta aggaataaca ttatgtcaat gacaccccgt gaaatcgtct cagaattaga
     5581 cgcacacatt atcggacaaa aagatgcaaa acgtgcggta gcaattgctt tgcgtaaccg
     5641 ctggagaaga atgcagttgc cggaagatct ccgccaagaa gtgaccccca aaaatatttt
     5701 aatgatcggt ccgaccggtg tgggtaaaac cgaaatcgcc cgccgtttgg cgaagcttgc
     5761 caatgcccct tttatcaaag ttgaggcaac caaattcact gaagtggggt atgtgggtaa
     5821 agaagtggat tcgattatcc gtgatctagc tgatgtgtcg atgaaattag tccgccaaca
     5881 agcggtcgaa aaaaataaaa tgcgtgcaca agatgcagcg gaagatcgca ttttagacgt
     5941 attattgcca ccggcgaaag atcagtgggg aaatgtgcag gaatccgaca ataattctac
     6001 ccgccaaact ttccgcaaaa aattgcgtga agggcaatta gacgataaag agattgaaat
     6061 tgacgtggca gctcaagtga gcgttgagat tatgaccccg ccgggaatgg aagagatgac
     6121 ctcgcaatta caatcgctgt ttgagggaat gtcgccaagc aaaaccaaaa aacgcaaaat
     6181 gaaaatcaaa gatgcgttaa aggtgatgct tgatgaagaa gcggcgaaat tagtaaatcc
     6241 tgaagagctg aaacagcaag cgattgaagc ggtggaacag cacggtattg tctttattga
     6301 tgagatcgac aaaatctgta aaaaaggcga gcattcgggt ggagatgttt ctcgtgaagg
     6361 tgttcagcgt gatttacttc caatcattga aggctcaacg gtaaatacca agcatggtat
     6421 ggtgaaaacc gaccatattc tgtttatctg ctcgggggca ttccaagtgg ctcgcccgtc
     6481 tgatttactc ccagaattac agggtcgctt gccgattcgt gtggagttaa aatcgcttac
     6541 caaagaagat tttgagcgta ttttaaccga accgaatgcc tcattaacct tgcaatatcg
     6601 tgagttgatg aaaactgaag gcgtggagat tgagttcact aaagacggta tcagccgtat
     6661 tgcagaaagt gcattccgtg tgaacgagaa aaccgaaaac atcggggcaa gacgtttaca
     6721 caccgtgctt gagcgtttga tggacggcat ttcgttcgat gccagcgaac gccgtggtga
     6781 aaaaatcatc attgatgaaa actatgtttc cgaagcgtta aatgacgtgg tggaaaacga
     6841 agatttaagt cgctttattt tgtagtttta agttatacaa gcggttattt tagcgaaaaa
     6901 tcttgcgaat tagccgcttt tcatattgtt agttgtaaaa atgaaaaatc tatacaaatg
     6961 gcctgctgca caatcgcttt atccaaatca gggaaagaag tcttacgcag ggaaacgttt
     7021 tcgttaccgt cttcgctctt ggttgcatca ttccaaaatc aagcaatttg agcagttcgt
     7081 tacacaaaat ccacaactga ttccgctctt aaatgctcga ccaaattaca gctaccccgt
     7141 ggctcaccgc tttttagata agcgtttcag tgcaaaacaa cgcttacaaa aaatcacaga
     7201 taacctgctg tttttaccgc aaaaattggc tcatttacca cctctatggg aacaagcggt
     7261 caattttggt gaaattattg cagattttga gttatggctt aacatcaatg aacatcagcc
     7321 gatggaaggt ttttgggcat tagaacttcg ccacagaccg actaatcagc tagtttattt
     7381 attaacattt ggtaagttag atgaagcctt gttgatagcc gtaattcaag gtccgaattt
     7441 tgaaggttca aaagagctgg tgaaacaatt aaccaaaagt tgccacggct tacgcccggc
     7501 ctatttaatg gttgaaacga tgaaggcttt aacggctgtt cttggctatc agagtttact
     7561 aggcattcca cagaaatacc agaataaatc ccgctgggtg caaagtaagc gctatgtagt
     7621 ggattatgat gctatttttg cggaatcggg cggaaagccg ggaaattatt ggcagttacc
     7681 ccttgaattg gaaagtaaaa aaatagatga aattccaagc aaaaaacgct caatgtatcg
     7741 caagcgttat gaaatgctag ctaatttaaa gcagaccatg gagcttatgc ttaaaactta
     7801 tactggctta aatgggtaaa tcaaagaata caagcggtca aaatctgcaa aactttgcaa
     7861 aactttgcaa aaaatgaccg cttacaagtt acttgccgcc catccattta tcatagattt
     7921 tttgatattc gccattctct ttaatcgttt ttaatgctgc attgaattga tcaactaata
     7981 cttggttttt caagtgagtt gcaatgccta aaccatcacc aaaatagttt ggattattga
     8041 ttttctcccc tacaaaatct agcccttcgt gttttcttgc catctcagcc aataccggca
     8101 catcgccaaa aatagcatca attcgcccat tttgcacatc taaaatagca ttttgataag
     8161 aggcataaga tttcacattg tactcttttt tctcttttgc taaatagtgt tggtaagtag
     8221 tcccattttg cacaccaatc gttttcacct tagcaaaatc tgtatctttt ttcgcaatga
     8281 aggcagcaga gcttggaaag taaggctcgc taaataatac ttgtttctta cgtggttccg
     8341 taatacccat acctgaaatt gcagcatcaa attgtttttg ttttaggctt tggattaagc
     8401 tatcaaaagg ttggctatgg aatgtacaat ttgcattcat ctctttacag atagcatttg
     8461 caatatccac atcaaaaccg ataatttctc ccttctcttc ggtcatttca aatggaggat
     8521 agcttggctc catcacaaat ttgatatctt gtgcctgcgc agtaaccaca cacccgaata
     8581 aaagggtcaa aagtgttttt ttcataaaaa gtccctgtgt tttcattata aggattacca
     8641 ctttaacgca gttactttct taaaaaaagt cttcttttca taaagtttgt tttatgtcat
     8701 acaaacacat caaattgaga tgtagtttct caatcctctt gattcctcta tctcaaaaaa
     8761 acaacccaaa agaaaaaag
//
LOCUS       DANMGB010000098         8701 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.098, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000098 DANMGB010000000
VERSION     DANMGB010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8701
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.098"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            68..1993
                     /locus_tag="PXG19_001691"
     CDS             68..1993
                     /locus_tag="PXG19_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL6066976.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            2067..2432
                     /locus_tag="PXG19_001692"
     CDS             2067..2432
                     /locus_tag="PXG19_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL6066977.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            2434..3120
                     /locus_tag="PXG19_001693"
     CDS             2434..3120
                     /locus_tag="PXG19_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL6066978.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            3204..4967
                     /gene="msbA"
                     /locus_tag="PXG19_001694"
     CDS             3204..4967
                     /gene="msbA"
                     /locus_tag="PXG19_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL6066979.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            5056..5688
                     /gene="lolB"
                     /locus_tag="PXG19_001695"
     CDS             5056..5688
                     /gene="lolB"
                     /locus_tag="PXG19_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL6066980.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            5676..6530
                     /gene="ispE"
                     /locus_tag="PXG19_001696"
     CDS             5676..6530
                     /gene="ispE"
                     /locus_tag="PXG19_001696"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL6066981.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            6556..7506
                     /locus_tag="PXG19_001697"
     CDS             6556..7506
                     /locus_tag="PXG19_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL6066982.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            7584..8594
                     /gene="pyrD"
                     /locus_tag="PXG19_001698"
     CDS             7584..8594
                     /gene="pyrD"
                     /locus_tag="PXG19_001698"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL6066983.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         2509 a         1585 c         1986 g         2621 t
ORIGIN      
        1 tttaattttt cacaagcggt tgtttttgca aaatattttg taaattcgac cgcttgcctg
       61 tttttaaatg acaaaatacg acgataaaat tcagcatgca tttagcgaaa atgggttgct
      121 cagccaaaat atcagtggat ttcgaccacg ccaagcacag cttgaaatgg ctcaagtggt
      181 cgcaaaagca gtaaaatttg cgacacctgt tgtggtagag gcgggaaccg gcacaggcaa
      241 aacctttgct tatcttgtgc cggcactact ttcaggcaag aaaactattc tttcgacagg
      301 ttctaaaaac ctgcaagatc aactttttaa tcgagatctt cccactattc aaaaagccct
      361 gaaatacaaa ggcaaaattg cgttactcaa agggcgtgcg aactatttgt gtttagagcg
      421 tttagatcaa gtgaccgcaa tgggcgtact tggggataaa tccgttctta ccgatttaaa
      481 aaaagtcagt aaatggcaaa atgccactaa aacaggggat ttaagtgaat gtattaccat
      541 tgccgaagat agcccgattc taccgcagtt agttagcacc accgagagtt gcttaggctc
      601 ggactgcccg cattttaaag attgttatgt ggtacaagcc cgccgtaaag cgatggaggc
      661 agacgtagtg gtggtaaacc atcacctatt ctgtgctgat atggcagtaa aaaagaccgg
      721 ttttggtgag ttgatccctg aagctgagct ggtgatcttt gatgaagctc accaactgcc
      781 ggatattgcc agccaatatt ttgggcaatc gctttcttcc cgccagttat ttgatatttg
      841 taaggatacc aatattgttt accgcactga actcaaagat ctgtctcaat taggcaaagc
      901 ggctgatcac ttgacgaaag tagtgcaaga tttccgatta ttgatgggcg gagaagggca
      961 gattcgaggc aatttgcgag agttatttcg tgataaaaaa gtggtcgatg gcttggtaaa
     1021 agtggctgaa aatattgatt ttttaagtga agtggcgaaa aaatcgctgg ggcggtcgga
     1081 aacgttggat aaaattttcg agcggttagc agaagttaag gttcaactta aaaaattaat
     1141 ggatactagt gtgacaggct attgttactg gtatgaggcg aatggacgat cctttgggct
     1201 gcatattacg ccgcttatgg tggcagataa atttggtgaa cagttgaaga accagcaaat
     1261 tggttgggtg tttacctcag ccacactcga agttgggggc aaattcgatc atttttgtca
     1321 acggctgggc atcgaaaatg cggagcagtt ggtgttacaa agtccgtttg attaccaaca
     1381 tcaatcttta ctctgtgtgc cccgctactt gccggatacc aataaatcca atactttaac
     1441 tgctctcggg caattattaa aaccggtgat tgaggcgaat aaagggcgtt gtttcttgct
     1501 ttgtacttcc tattatatga tgcgaggttt agccgacttt ttacgcgaac acagttcgct
     1561 gaatgtgtta ttgcaaggcg aaaccagcaa aagccgttta ttggaaaaat ttgtgaaaga
     1621 agatcacagc gtgttggtgg cgacccaaag tttttgggag gggattgatg tgcgaggcga
     1681 tgatttatcg ttggtgatta ttgataaatt gccgttcact tcaccggacg aaccattact
     1741 caaagcccga atggaagatt gtaagataca gggcggtgat ccgtttaacg atattcaaat
     1801 tcccgaagcg gtgattaccc tcaaacaagg tgtagggcgt ttaattcgtg atgtgaccga
     1861 tagaggtgta gtgattattt gtgattcccg tttggtgatg cgaaattatg ggcaaacttt
     1921 cttgaaaagt ttaccgccgt ctagacgcac tagagatttg gggaatgtta ttcaattttt
     1981 gaaacaaaaa tagggttaca agcggtcaga tttctgcaga tttttgcaaa aaaacggata
     2041 aaaataaccg cttgttgagg agttatatgt tgtctacatt gctgcgtatg gttgcttctt
     2101 tggcattgtt atttgtgatg ctttatttag gcaagttaat cgtttatcta ttccccatcg
     2161 ggatcccgga tagtatttta ggtatgctta tcttattcgg ctgcttggtt atcggcattg
     2221 ttaaagtgga atgggtgata ccgagcgcga aaccgctcac acgttatata acactatttt
     2281 tccttccgat ttgtgtcgaa ctcatcgaac atcttgagct gttacgccaa aatctgaaca
     2341 cttttgtatt agcaacggca ttaagcacct tagtttctgt ggtcgcgatt ggcgtgtttg
     2401 cacagtggat ttttcattac aagagagggt aaaatgagct atctttacac tgtgttgacg
     2461 gtaatcatgt ttattgccgg tttgaaaatc agccaaaaac tcaagagcag ttttctgaac
     2521 cctttcttaa ttgcactcgc tttgctaatt ggtgtattac tgatttttaa tatcccttac
     2581 caagactatt atcaaggtaa ttcccccttg aataacttac ttggcgtttc tgttgtggca
     2641 cttgcttacc ctttttatga acaattaccc catatccgta aaaaatggcg acagattgtc
     2701 gtgattttgc tgtttagtac catcattacg atgataaccg ggcttgggtt ttcattatta
     2761 tttggggcaa gccaagagat cttagccgcc attttgccta aatcggtatc aatgccaatg
     2821 gcaattatta ttacgaatga aattaatgga aatgttgcaa tcgcagcggt tggggtgatg
     2881 atcgcaggct tagtgggatc tattttaggc tttacgcttc tgcgcctggc aaaagtaaga
     2941 aatgtgatgg tgattgggtt aagtatggga gctgcttccc acgcattagg cacggcaaga
     3001 tgcttagagc atagtatgaa agccggtagc tatagttcta tcgcattagt ggcttgtggt
     3061 gtgctgtctt ctatatttgc acctttaata tttaacgtta tcgtcacgtt atgttactaa
     3121 aaacagtgaa atctcaaacc ttatttggta actggctgaa atcaaggtac aataccgtga
     3181 tttttcaatg aaaatagaga attatgcaag aacaaataac acaagaaaaa gatctttcta
     3241 cgcttaaaac ctttaagcgt ttatggccga ctatcagccc gtttaaagcg ggtctgatta
     3301 caggtgctgt cgctttagta ttaaatgcgt tagtggattc tagtcttatc tatctcctca
     3361 aacccttgct agatgaaggc tttgggcaag ctaataatga ttttctgaaa ttgatggcgg
     3421 tgcttgtagt agtttttatt ttagtgcgcg gtattaccaa ttatattgcc agttactgtt
     3481 tagcttgggt gtcaggcaag gtggtaatga cattacgccg ccatattttt caacatttaa
     3541 tgtatatgcc ggtaagctat tttgataaca acccgaccgg gcgtttgctc tcacgagtga
     3601 cttacgatac cgaaatggtg gcgagttctg cttctcattc tttagtgact attgtgcgtg
     3661 aaggggctta tctgctgtca ttgtttgtgg tgatgatcta taccagttgg cagctttcta
     3721 ttgtgttatt tgtgatggct cctatcattg gggtactgat cagtttcgtt tcaaaatatt
     3781 ttcgtcaatt aagtcgcaat atccaaagtt caatggggga gcttactgtc acgacagaac
     3841 aaatgcttaa agggcataag gttgtacttt cctttggtgg gcaggaaatt gagaaagcac
     3901 gttttgatcg agtcagtaat gatatgcgtc gtaaagggat gaaagtcgtt tctgctgatg
     3961 gcatttctga tggtgtggta cagcttatcg cctcttttgc gttatctgct gtgctttatg
     4021 ttgcgacctt ccccgaggtg atgagtgaga atttaaccgc aggttcattc acagtagtgt
     4081 tttcttcgat gatggcaatg ttacgtcctc taaaatcact caccaatgtg aactcgcaat
     4141 tccaacgtgg aatggcagcc tgccaaacgt tatttgaatt tttagattta aaaactgaaa
     4201 aagatcacgg cttaatctcc gttgctaaag ctgaaggcaa tgtggaattt aaaaaggtaa
     4261 gctttagtta tgaaggtaaa gaggaaaaag cactcgataa tatttctttc accattccta
     4321 aaggcaaaac agtagcattg gttgggcgtt ccggctcggg taaatcaact attgccaatt
     4381 tgcttacccg tttttatgat gtgactgacg gtcaaatttt gcttgatgga attaatattc
     4441 aagattaccg cttaaaaaac ttaagagaac aatgctcggt ggtttctcaa caagttcatt
     4501 tgtttaacga tactattgct aataatattg cttatgctgc aatcgacaaa tacagccgag
     4561 aagaaattat tgctgctgca aaagctgcac acgcaatgga atttatcgaa aaattggaaa
     4621 atggcttaga cactgtaatt ggtgaaaatg gcgcaagtct ttccggtggg caacgccaac
     4681 gcttggcaat cgctcgtgca ttactgcgaa attctcctgt gcttgtgctg gatgaagcta
     4741 cctctgcatt agatacggag tcagaaagag cgatccaatc tgcacttgaa gtgctacaga
     4801 aagatcgtac ggtgttggtc atagcacacc ggttatcaac gattgaaaaa gccgatgaaa
     4861 ttttggtagt cgatcacgga aatattattg agcgtggcag ccatacggaa ttgttagcac
     4921 aaggtggggc ttataaacaa ctccatagtt tacaattcgg agcctaattt gtaggggaga
     4981 aatatgtttc tccccaatta atgataaaaa cagggcgaaa aatatttcgt ccctacaata
     5041 atttatttgg atactatgaa aaaactgaca aaacttttat ctcttagtgc tttactggtc
     5101 ttaaccgcct gtaattcggt actaaatgcc tcaacagagg tgcaacaacc aacagtacaa
     5161 attccgcatg acgatccaca atggcagcag catttagcga aactgagcca aattcaaggc
     5221 tatactgcaa cggggcaatt tggctatatt tcgcctgaag agcgtttttc ttcccatttc
     5281 aactggcgtt atactaatcc aatccaattt gggttagagc tttcctcgaa tctctcgact
     5341 aaatcactga aattagagcg taataaacga ggcttaacgg tttcggacaa tgagggtaat
     5401 agccgttctg accgtgatgt tgatgcgtta atgcaagaga ttatcggtgt ttcgtttcct
     5461 atcgatcagt ttgcctattg ggtaaaaggc ttgcctgaaa aagatggcaa ctatattgtg
     5521 aatgaaaaac gccagctgtc gcaatttagt tatccgctta atggcacgct ttggaaagca
     5581 agctatgtgg agtatcacga agatcgtgta ccaaacttac cgaagctgat tgtgcttgaa
     5641 aacggcactc aaacgttgaa gatccgcatt gaaaaatggg cgtattaatg aagaaagtca
     5701 ccttacccag cccggcaaaa ttaaacctgt ttttatacat taccaataag cgggcagacg
     5761 gttatcacga gctacaaacg ctgtttcagt ttttagattt tggtgatgaa attgagattg
     5821 agatcacaga aagttcagag gttgaattaa ttaatccggt agaaggggtg gcaactgagg
     5881 agaatctcat ttaccgagca gcaaaacttt tgcaaaaaac gaccgcttgt aggcaaggct
     5941 gccgtattgg gattaaaaaa aacctaccga tgggcggagg tgttggtggt ggatcttcta
     6001 atgctgcaac agtattagtc ggtttaaatc acttgtggaa taccgagctt tcattggaaa
     6061 aattggcaga attaggctta agtttagggg ctgatgtgcc gatatttgtt agaggtatgg
     6121 ctgcttttgc cgaaggcgtg ggggaggtgt taactccttg tgatccacaa gaaaaatggt
     6181 atgtagtgct aaaaccagaa gtgtcgattt caaccgcagc ggtgtttacc gacccgaatt
     6241 tacctagaaa tacgccaaaa cgccccttag ccgaattatt atctttaccg tgggaaaacg
     6301 attgcgaaaa agttgtacga gaaaagtatt ctgcggttga agatcttata caagaattgt
     6361 tacaatatgc tcagtttagg ctaacaggca caggtgcttg tattttcgcc gaatttgaaa
     6421 caaaagcaga agccgagcag gtttttgcac ataaaccgga agccgtcttc ggttttgtgg
     6481 cgaaagggca aaatatttcg ccattacatc aaatgttatt ccaaatctaa ccatcttaac
     6541 cttaaggatc aatccatgac agatattaaa ctgtttgcgg gcaacgcaac tccggaactt
     6601 gctaatcgta ttgcaaaaca tctttatacc tcattaggta atgcaacagt tggtcgtttt
     6661 agcgatggtg aaattcaagt acaaatcaat gaaaatgtgc gtggaggcga tatttttatt
     6721 gtgcaatcca cttgtgcacc aactaatgat aatttaatgg aattgatcgt gatggtagat
     6781 gcgcttcgcc gtgcatcagc tggtcgtatt accgcagtga ttccgtattt cggttatgca
     6841 cgccaagaca gacgcgtgcg ttcggcccgt gtgccaatta ccgcaaaagt gattgctgat
     6901 ttcttatcca gcgtaggggt agatagagtc ttaacctgcg acttacacgc agagcaaatt
     6961 caaggtttct ttgatgtgcc ggtagataac gtatttggtt cccctgtgtt aatcgatgat
     7021 attttgaaaa aatccgattt ggtcaaccct atcgtggttt ctccagatat tggtggggtt
     7081 gttcgtgcaa gagcggtggc aaaattatta aatgataccg atatggcaat tattgataaa
     7141 cgtcgtccaa aagcgaatgt atcacaggta atgcacatta tcggtgatgt ggctgatcgt
     7201 gactgtattt tagttgatga tatgatcgat actggtggta ctttagtcaa agcggctgaa
     7261 gcgctgaaag aacgtggcgc ccgtcgtgtc tttgcttatg ccacacacgc ggtattttca
     7321 ggcacagcag ctcaaaattt agcgaatcct gctttagatg aaattgtagt aactgatact
     7381 attccactga gtaatgagat taaagcatta aataaagtac gtgttttaac attatccggt
     7441 atgttagcag aagcaattcg ccgtattagc aatgaagaat ccatttcagc aatgtttgat
     7501 gcctaattta tgagaaaaaa cccagtcgaa agattgggtt tttcatatct gttcactact
     7561 atatttagtt taagataatt tgtatgtatt ccctgattcg taaattactt tttgcactag
     7621 atacggaaaa agcacatcaa ttctctattc aggcacttgc tttagccgga aaatcgcctt
     7681 tttcgattct gccaacaccc gataatccga cccaagtaat gggactcacg tttaaaaatc
     7741 caatagggct tgcagccgga gcggataaaa acggtgaagc gatagatggt tttgggaaat
     7801 taggatttgg gtttattgag gttgggacta ttactcctct cgctcaagac ggaaacccta
     7861 aaccgaggca atttcgtatt gtagatgcag agggaattat taaccgcaat ggatttaata
     7921 ataaaggcgt tgatgtttta gtagaaaatg taaaaaatgc aacctatagt ggtattttag
     7981 gtattaatat tggaaaaaat gcggttacac caattgagca tagctttgat gactaccaaa
     8041 tttgtttgcg taaggtttac caatatgctg attatgtggc ggtgaatatt tcatcaccca
     8101 ataccaaaaa tttgcgcagt ttacaatatg gtgaggcatt agatgatttg ctgcgaaacc
     8161 tcaaaaatga gcaggcacaa ctttcgcaaa aaatggggaa atatcgaccg cttgttttaa
     8221 agattgcgcc tgatttaacc gatgaagaaa tcgtttctgt agccgatagt cttattcgtt
     8281 accaaattga tggggtgatt gccggcaata ctaccttgtc tcgtgaaagt attgccggat
     8341 taccgtattc ggaacaactg ggtggattaa gtggcaagcc attacactca ttaagtacaa
     8401 ggttaatttc aaaattatct gccgagttgg gcgagagaat accaattata ggttgtgggg
     8461 gagtccattc gttagagagt gggcaggaga aagtgaatgc aggtgctagt ttattgcaag
     8521 tctattccgc aatgatttac caaggaccat cattaattca aaccttagcc aaacaccttc
     8581 agctgaacag ttagggatag atttctagtt aaaaatgatt ggttaggttt atttctgtca
     8641 tcttagtgga atagatggcg gtattagcta tctatcaaaa atagacaaaa ttgcctattt
     8701 t
//
LOCUS       DANMGB010000099         8691 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.099, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000099 DANMGB010000000
VERSION     DANMGB010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8691
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.099"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..375)
                     /locus_tag="PXG19_001699"
     CDS             complement(<1..375)
                     /locus_tag="PXG19_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066984.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKL
                     GSKELRKVLEWINENNLCIHFAL"
     gene            complement(402..1076)
                     /gene="cas4"
                     /locus_tag="PXG19_001700"
     CDS             complement(402..1076)
                     /gene="cas4"
                     /locus_tag="PXG19_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL6066985.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(1076..1939)
                     /gene="cas7c"
                     /locus_tag="PXG19_001701"
     CDS             complement(1076..1939)
                     /gene="cas7c"
                     /locus_tag="PXG19_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL6066986.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(1949..3730)
                     /gene="cas8c"
                     /locus_tag="PXG19_001702"
     CDS             complement(1949..3730)
                     /gene="cas8c"
                     /locus_tag="PXG19_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL6066987.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3752..4429)
                     /gene="cas5c"
                     /locus_tag="PXG19_001703"
     CDS             complement(3752..4429)
                     /gene="cas5c"
                     /locus_tag="PXG19_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL6066988.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4671..6422)
                     /locus_tag="PXG19_001704"
                     /pseudo
     CDS             complement(4671..6422)
                     /locus_tag="PXG19_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6412..6873)
                     /locus_tag="PXG19_001705"
     CDS             complement(6412..6873)
                     /locus_tag="PXG19_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6066989.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
     gene            complement(7032..8168)
                     /locus_tag="PXG19_001706"
     CDS             complement(7032..8168)
                     /locus_tag="PXG19_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6066990.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
     gene            8215..8631
                     /gene="tnpA"
                     /locus_tag="PXG19_001707"
     CDS             8215..8631
                     /gene="tnpA"
                     /locus_tag="PXG19_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL6066991.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
BASE COUNT         2383 a         1951 c         1638 g         2719 t
ORIGIN      
        1 caaagcaaaa tgtatacata ggttattttc attaatccat tccaagactt ttcttaattc
       61 ttttgaacca agtttattaa aaaaattctt tcctatttta ctaaacttta attccttatt
      121 ctgcaaatga aggagttttc tccaatcagg agcaattaaa ttagcattac taatttgagc
      181 aatccctcct aatacaaata caggaggaac cccaatgtgg gaagaaatgg ttctattaaa
      241 attactacct tttttatcat taggcgtatg ttttaacttc ccaatatttc caccactctc
      301 atcaagaaat attttgtagt tatgctgtgc tatatttaat ccgtgaaatg atctttctaa
      361 gtttgaagtt atcacaacaa gtccctcccc aaagtaggta attataataa agatccaaac
      421 actcccacca catacccctt cgatctatcc ctttccaaca actttggttg gcagaggtcg
      481 ataagcgagc aggctttgca gcgtttgctg tattctggag gaggtgtggt tccgctatct
      541 aagagcgacc gcacttcggc aatggtggcg agggttttgg tgcgtagttc ggtggaaaaa
      601 atgatcggca aacggtggcg agtttgcata taccacaacg ccccttcgtt aatcgtctgc
      661 tctgtcattt cttccaaaca taaggcttgg gcacagagtt ggatttcatc aatcggatca
      721 agtttgggct tgccacgttt gtattccact ggttttagct cgcctgtttt taggtctcgc
      781 tcaaccaaat ccaaaatgcc gcttatgcct aatttttcgg ctgcaacgtg aaccgttcgc
      841 tcaaagcgaa tccctttgcg aacttctggc tcaccactat ctacccgctc gtgcaacgct
      901 tgaccttgtg cggtgagata gttttctgcc cacacctgtt cgttgtggat cagcgcacat
      961 tgacgtgggc agaaggcata gtgttgcaaa gcggaaagcg aaattgaccg cttgtcatcg
     1021 ccaaattttg gctgaacaag cggtaaaatt tccgcagaat tttgcaaatc gcccattaca
     1081 gtaattcttc aacggttaca cccgttaagc cttcggtttg tacgctgata cagtaatcgt
     1141 catagtcttt cgctggcgtg tctttttcac cgttgattcg ctcaactttt accgagtcaa
     1201 acagtttgtg tgcaggttgg ttgcctaatt cgctgtcgtg tttaaatacg atcagtttac
     1261 gagctgccat ttcgcctcgt gcggcagaac ggtcgtgttc aaacataagt tgcaaggctt
     1321 gccaaagttt ttgtacatct tcatcagaaa agcccgtttt ttcagcgagt ttagctgaaa
     1381 taaagccgtg aacacgataa agtgcgtaag gcacgatata tttacgcccc atagtccgtt
     1441 ctttttcaag atctttttcg ttggtcactg ccattcgtgt gatcgatact tctagcggaa
     1501 taatcggatc gatagattga gcgaacgcca attgcactgg gcctcgcacc tgtccgctgt
     1561 ttacttcggt agtcattacc gccccaaagg tgcgaatatc gaaaaagttt ttgcacatcc
     1621 aagcggtaat ttctcgggct ttagcttcct cttttggtag ttttttcgct tccgattcaa
     1681 tccctaatgc ttcataagca cgtttgtttt gtaaattcag aacacttttt tctttaacat
     1741 aaatttcgta acccgcctcg ttttcatagc tcatttcaat aaaattgcgg attttgcgtt
     1801 ttaggcaaac atcggtgact aaacctttac tggtttcagg atcaaggcgt ggcatatttc
     1861 ctgcatctgg atcaccattt gggttaccgt tggttacatc aaagaaaaaa acaaattcat
     1921 agcggttttg aatagacata gtgtttcctt agttttcaat agactcagtg gtttcttttt
     1981 tagcgaaata gctttgtttt tggtggtaat aaccaatcgc aaaacgccct tgttcatcga
     2041 tacttaaatg gcgagggaaa ttttccggca agctggcaat aatctcacct aaatccttat
     2101 ccagattaac cgccattccg cccttatctt ttctcaagcg agataaatgg tgttttgcac
     2161 cgcttaataa gcgagggaat accgaaaacg gcacggcaga agccgaacca taatagcggt
     2221 cggcaatgcc ggcatttaat tcgcctaatg cttggctttg gattctttct aatactgcaa
     2281 ataacctgcc gagcaagtaa gcttggttat cgctttcttt atttaagctc ataggaactc
     2341 cttctttaat aaaacctttt ctaaattttc gttgtaagac tgctttcatc aacgctactc
     2401 gcaaaccgtt aatatcgccg tctgctcgga ttcgagtcac taactgtgaa agtaaactca
     2461 tcggatataa atgaccgcta ataactgcgc gagccatttc acccgccaag actggagaaa
     2521 tattctcact tttacctaat gaagcggttt gtaataatag tcgccaaatg gaaggtggtg
     2581 ttttccatgg gcaaggctca agagcgagat cttgccaatg ctcgctgagg ttttttgcca
     2641 gttgcccaaa ggtggtatcc agccaaaaac gtaccgaaat gcgagctgca tttggagcaa
     2701 gccccaacac ataaaaacgg gtgttttcag ataattctgg ggaaatttct gcaagcggtc
     2761 gtcctttgct gattttttgc aattcttcaa agattttttg gttttcttgc tcatcatctg
     2821 gaggcgtcat taaagcagca aaaaagcctt cagcagcttc agcttgggtg gtattgtctg
     2881 cttctgccca aaagacagtg ctggcatcac caatagttaa acgatgtttc tcggtgcgta
     2941 acaaataatt taaagcagta gtgtaggcaa aggcggcttg ttcagaaaca ggggcattac
     3001 taccttgttc cttgccaaat gaagtgaagg attctttatt gaaagagatg attgaaccac
     3061 cggaactttg cccaccaaat acccctttaa taggaggatg agttcgttga attggcgata
     3121 atttgcctga aattaagcat aaaccttttt cagcattatc actttgattt atcaacaaac
     3181 ttgtccaaag ggtttgtgca gcttctcgct gatgaatata accgcttgtg ccgactaatt
     3241 taaacacgac attcgcatca agaatttctc ttgggcagat tgattcggca aaatgtgtgg
     3301 gttgccattg ttgcaggaaa tttcttatcg ccattaaacc ttcatcattg gaatctgcaa
     3361 gcaaatccaa atggtactgt ttaaatgcct caaaggtttt ctcggcgaaa ttgatgggtt
     3421 gatctttggc ggtggcttta tcaggattac tttcaatgcc tagcacataa gcggttttat
     3481 cccacagaaa attgggctta atgccagacg tgcgtttttc agggcgaggt acgctcatca
     3541 atttcggttt tggtttctta tcttctgtta aatttgagat cacattgacc aaatttccct
     3601 ttgaatctaa ttctagtacc caaccgattt tttcttcact gaaaccataa gaaggcactt
     3661 tagcttcgcc tgttaagcga tcttcttgtg ctgcaaggcg gtaataatag cgagttaagg
     3721 cggtaataat agcgagttaa ggcggagaga atcatgattt gacctcctct gcataaaatg
     3781 gtggcacatc aatcacgcca tttttcattt ccgcacggaa gaaacgaggt tgattaccgt
     3841 gctcaaaatc aatgtcgtgc aacatccagc ctaaatcccg atctcgctca ttttctgcca
     3901 aaaaacactc aggtaacggt tcatcgtcat caatcaaggc aaaatttgcg gcaaattcac
     3961 gcacgcccat acaaggctgc tggaaacatt gccccttttt cgcacggcgt ttaaacattt
     4021 caatatgctt ggtgacggtt tccgcctcgc ctgccatttt ggtcagcact gcgtgagctt
     4081 cgatcacata accgacattt ttcagcacag tagcagcacg ttgttggcgg tcgtcttcaa
     4141 tcacagtata taaatccgcc actgttttac gcttcattgc accactgatt ttactggcag
     4201 aaattttact gcctaactca ttacggcgaa cagactcaaa ttgaatcggt tgtaatacat
     4261 aaattttatc aatcacccag cgaattgccg gcttccaatg caccgcagcc aaaatccccc
     4321 gtgccgcaga cggcgtaatc acatcataag acacccgttc taccttcatt tcaggacggg
     4381 taaaacaagc ataatcaccc caaatatgga gcctgatttt gtttggcata atagaatgct
     4441 ccttttaatt atgtaacaca cacctccccg aagggaggtg aaatttcttt agcttatatt
     4501 ataactgctt tggtttcaac ccacgcactc agtaaaatgc gaaaaatttt atggcttatt
     4561 atattaagcg gtcggattta cttagaaagt tgcaaagtta tttgagtatt taaccgcttg
     4621 tatttcaaaa atagtcagaa aaataacagc attctaggta caatattttt ctaagaacga
     4681 acttgtctcc gcaatgcctc tactgcgttt gacacagcat ttggtttggg ctcctggttt
     4741 gcccaatcag accagaattg gcgtgtagca ctttctgggg ctatatgcgg tttagcaagt
     4801 ttgattcgtg taggtaatag aatcgaatcg cctagcaata acgcttcgcc taaatcaagt
     4861 aacggcaata tatcagtaat tccaaccata gattccggca ataaacgctt tacaacactt
     4921 tgatcttgac catttgttaa tcgtaaaacc aagaaattat tacattgact caaaattgtt
     4981 cggcttacat ctgaaggacg ttggctaacg accaacaaag acacgccata ttttctacct
     5041 tctttcgcaa tccgctcaaa ggcttccaat gcgcgttttt ccgctgcttc cgctgaatct
     5101 cgaacaggga gatataaatg tgcttcatcg caaataatcg ttagtggatg gcgggaatct
     5161 ttatccatcc aaaattgaat gttgtataaa aggcgggcaa gaactcccgt aacaatcggt
     5221 aaaacatccg acgggacttc cgaaaaatca ataattttta tccctttttc gctctcagaa
     5281 gcagaaaaca gttttgacaa catattttcc agccacccat agctgttgca ctctactggc
     5341 ggttggaaca taaaaccgca acgtctgtca tctattttgg ctttcatcct tcccataaac
     5401 ctagacaact tactatacca aggaccttgc tttgttcctg aacctccctc tttaggtacc
     5461 atctcagaat tatctttatc taaacgagct aacaataatt caatagaata cggaattggc
     5521 gaatcaacag taaacgtttc caaaacatca tttctttctt ccttattcaa tgtttgctct
     5581 tttaatgcgc gaacatgctc agtaaaacgc gccgcctgat tcggagcatt atcatcactg
     5641 cgatctaaaa ttaaagccag catttattcc cgattgagca gccaataggg aataaataaa
     5701 ctgcgttcat ctgaaccatc caaatctccc ggtccagcaa tacggtattg ctgagcgata
     5761 gcgtttttac cttcgcatag agtgctatat tcaccgtgca tatcgaatac aataagatta
     5821 gcagctttta aagctgctgc acgttccaat attaatgcaa ctgaccagct tttaccggaa
     5881 ccagtactac ccaaaatagc agcgtgccgt tgaaagaatt tatctccgtt tgctatagct
     5941 acagccgttt catcagccat aaaatgacct aaagtcagcc gttcattttc ttttacgtta
     6001 gcggacaaaa gattcataaa taattgcaga ttgctgccac taatatgaaa gcaatctcta
     6061 tcaatttgcg gaaaacaatc cgctccccgc ttaaaagtgt tgctcaaact accatcaaca
     6121 gctttataag taccgattaa tactgccttg ataaagtcat cctgactttc acccagagga
     6181 atttcaccct cattagatat ttcttctagc agcaattttt cactgataga acgcgttacc
     6241 cgttcgataa tgccgataag gtactcacta gccgttctgc cttgaatcgc aatcagatta
     6301 cccacagcaa tactagtcat ttgttgatgc tcttcaacag aaatcaatac acggctggta
     6361 tctactgtta caaccctgcc caaacgggca ttgtctttaa aattcaatgt ttcatttgcc
     6421 attctctaaa atctctttta caaaaaactc aacgtcccac caatgaacat taggaataaa
     6481 agtttcttct tgcttgctaa ccacccttgt tccagcctta tctccatcaa aaatcagagc
     6541 cttacaattc ggagcttcct tcaccacgtt tctggcattt tctgaaagtc ctcttgtcag
     6601 aagtagtgtt ttcacaccac ttttaatttt gcctgtcaaa tgtgtttgaa ggtggtcatc
     6661 attaaaacca tagccgatac ataaaattga agaagcagaa tcaatagctt catttgcttt
     6721 ttctcgatga gcatcaaatg gttgtccata gcctttttta tacttcccaa caccaggcgt
     6781 aataattaaa ggctcttcca ctttacctat acaacttgtc attggaacgt ctccagccat
     6841 aaaccaatct aaactaccat gcggtttaaa gattttgata tgatctcgtt gacatcctcc
     6901 cctgcctaaa ggcaggggat tcctactagc tcccacagca agctgtgggc tactctcggt
     6961 gggtttctac tgctgatctc tattgagatt cacttcatag acgcttcggg tatgtcctac
     7021 cctgatattt attatgcttg gactattgct tgcccacgtg taagaacatt cattgctccc
     7081 actacatcgg cattttccgt atagccacat tctacgcatt caaaattttc ctgtgtttgg
     7141 cgattttctt ttgctgtata gttgcaacaa gggcaagtac gactggtatt ttgtggagga
     7201 actgctagca aaaatccgcc taaccattgc gttttgtagt ccagttgtcg tctaaattca
     7261 aaccaagact ggtctaatat cactcggttt aagcctgatt tctgtttcac atttttgccg
     7321 tgtacttccg ctgtgccttt ggctgatttg gacatattcg ccacttgcaa atcttcaaca
     7381 tagatcatcg cgtggttttt gctgatttgc gttgagattt tatgcaggaa atcttttcgg
     7441 cagttggcga ttttgtgatg taacttgccg attttatctt tcagtttttg ccagttttta
     7501 ctgaacttca ctttattttt tagctgtttt tgcagttttg ccaattttcc tttgtgggtt
     7561 ttaaacgcat ttaacggctc aaaaaattct ccattggaaa gggttgcaaa acgagcaatg
     7621 cccatatcaa tgccgatttc tccgccttta tgcgtgggaa tttcctgttt aaattccgtt
     7681 tgaatgctca caaaaaagcg tccgcatttc attgaaacgg tgacattttt tacttcccca
     7741 acaatttcac gactgttgcg ataacgcacc caaccgattt tcggcagata caagcggtcg
     7801 tttttctgct cgattttgca accttgcgga aaacggaaac tctcttttac gccttttttc
     7861 ttgaatttgg gcaaatccgc acgcttttga aagaagtttt taaacgcact ttcaaggtct
     7921 tttaacgact gttgaagcac ttgtgaatgg caatctttaa gccataccaa ttcttttttc
     7981 cattgcggaa gcaagttggc gagcttggta taactgaatt tgtgatggtt atcttgttcg
     8041 tactgctcat tttgccacgc caatgccttg ttaaacacaa agcgagaaca gccgcaaaac
     8101 tgcttcattt tgcgaacttg ttccccattt ggtctgattt caaatttaaa ggctttacgt
     8161 agtaacattg cacgaattag aatacaaaaa ttgtgcttat tctacacttg gcctatgaaa
     8221 aaagaaacag agattagacg tggtcgccac gttgttttta acttacacgt tcatttagtt
     8281 ttcgtgacta aatatcgcag ggaagttttt actcaagcaa ttttgaacga cttacactca
     8341 atttttgcaa cgatttgtgc tgattttgaa gccacattag tggaatttga tggtgaagat
     8401 gatcacgttc atctacttgt ggaatatccg cctaaagtcg ctatttctca tcttgtaaac
     8461 agtttaaaag gcgtttcgag ccgaatgatt agaaagaaaa actatccgag cattcgcaaa
     8521 aaattatggg gaaatcaact ttggtcaccg tcttactttg ctggtagttg tggtggtgca
     8581 ccaatatcga ttattcgcca atatatcgag caacaacaaa cacctgatta gttagaaatt
     8641 tgaaacggct ttgccgttta taccttatat ccacgcccta aaggacgtgg t
//
LOCUS       DANMGB010000100         8563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.100, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000100 DANMGB010000000
VERSION     DANMGB010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.100"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            60..1976
                     /gene="iolC"
                     /locus_tag="PXG19_001708"
     CDS             60..1976
                     /gene="iolC"
                     /locus_tag="PXG19_001708"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL6066992.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2265..3605
                     /locus_tag="PXG19_001709"
     CDS             2265..3605
                     /locus_tag="PXG19_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL6066993.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            3608..4948
                     /locus_tag="PXG19_001710"
     CDS             3608..4948
                     /locus_tag="PXG19_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6066994.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            5086..5910
                     /locus_tag="PXG19_001711"
     CDS             5086..5910
                     /locus_tag="PXG19_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6066995.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(5954..6196)
                     /locus_tag="PXG19_001712"
     CDS             complement(5954..6196)
                     /locus_tag="PXG19_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6066996.1"
                     /translation="MSDKSIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSA
                     LKKLGAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
     gene            6461..6709
                     /gene="rpsP"
                     /locus_tag="PXG19_001713"
     CDS             6461..6709
                     /gene="rpsP"
                     /locus_tag="PXG19_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL6066997.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            6742..7269
                     /gene="rimM"
                     /locus_tag="PXG19_001714"
     CDS             6742..7269
                     /gene="rimM"
                     /locus_tag="PXG19_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL6066998.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            7314..8069
                     /gene="trmD"
                     /locus_tag="PXG19_001715"
     CDS             7314..8069
                     /gene="trmD"
                     /locus_tag="PXG19_001715"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL6066999.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            8096..8446
                     /gene="rplS"
                     /locus_tag="PXG19_001716"
     CDS             8096..8446
                     /gene="rplS"
                     /locus_tag="PXG19_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL6067000.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
BASE COUNT         2454 a         1734 c         1936 g         2439 t
ORIGIN      
        1 atttcatttt tgtatgatgt atagtgtgta ttcaaattta cttgttgtaa ggagcggtta
       61 tggcaacagt taatcatcaa gatcgtccat tggatcttat ctgtttaggg cgtgtggcgg
      121 tggactttta tgggcaacaa atcggttccc gtttggaaga gatgaccaca ttttcaaaat
      181 acctcggcgg ctcgtcaggc aatgtggctt acggtacggc ggtgcaaggt ttacgttctt
      241 caatgctggc aagggtcggt gacgaacata tggggcgttt tctacgtgaa gagctacaaa
      301 gcgtaggcgt ggacaccagc catttaatta ccgataaaga acgcttaact gcactggtta
      361 ttctcggcat taaagataaa gagacttttc cgctgatttt ctatcgtgat aactgtgcgg
      421 atatggcaat caccaaagac gattttagcg aagcctatat tgcttccagc cgttgcttag
      481 caattaccgg cacgcacctg tcaaacccta aaacccgtga agctgtgctg accgcactcg
      541 aatatgcggg tagaaatgag gtaaaacgag cgttagatat tgattatcgc cctgtgttat
      601 ggggattaac ctcactcggt gatggcgaaa cccgttatat agacagtgcc gaagtcacca
      661 aatcgctaca agaagtattg caccatttcg atctgattgt cggcacagag gaagaatttc
      721 atatcgcagg cggttcgacc gatactctca ctgcactcaa aaatgtgcgt aaagtctcta
      781 atgccgtatt agtgtgcaaa cgtggggcat tagggtgttc agtatttgaa ggcgagctgc
      841 cgaatgattt agacggtggc ttgaatgtgt acggcgtgcg tgtagaagtg ctgaatgtgc
      901 tgggtgcagg cgatgctttt atgtcgggct tactgcgtgg ctacttaaat aacgaaggtt
      961 gggaacaagc gtgccactat gccaatgcgt gcggagcgtt agtggtatct cgtcacggct
     1021 gttcaccggc aatgccgacc aaacgtgaac ttgacgatta tttaacccgt gcagagagtg
     1081 taccacgtcc ggatttagat gagcgtttaa accacttaca ccgtgtcacc acccgcaaaa
     1141 aacagtggga aaatctctgt atttttgctt ttgatcaccg caaacagttg gtggatatgg
     1201 caaataaagt cggtgcagat cttgctcgca taccgaaact gaaacagctg ctattaaaag
     1261 cgatggaaca aaccgcaact caatccggct taccacaaaa tcaagcaggg atcctagccg
     1321 ataccacttt cgggcaagat gtacttaatg agattaccgg caaagattac tggattgccc
     1381 gcccgattga agagccgtct tcccgcccgc tggaattaga gtatggagat ttaggctctc
     1441 agctagcatc attcccacgc gatcacgtca tcaaatgctt ggcattttac cacccgaatg
     1501 atgaaagcgg tttaaaagcc cgccaagatc gcaagttaaa agaggtgtat caagcctgtt
     1561 gccgtaccgg tcacgagcta ttgttggaaa ttattctgcc tgctgatatg ccacagagtg
     1621 aggctttcta taaccaagcg atagcacatt tctaccaact tggcattaag ccggaatggt
     1681 ggaaattgcc ggatgtttct cgcgcacaat ggcaagcgat ttccgccacc attgaggcaa
     1741 acgatccgga ctgtcgtggt attttaattt taggtttaga tgccccgtta gaggtgttta
     1801 aagacacctt tgaacaggca aaaggctgtg agaaagtgaa aggctttgca gtcggccgca
     1861 ccattttcgg tgaaccgtcc gaaaaatggc ttgccggtga attggacgac aataccttga
     1921 tttctgcggt atcggagaaa tatcgcactt taatcgatct ctggcaacaa cgttaatcat
     1981 attgctttaa gtgaaaaccc cttagcttat gatattaagc aaggggtttt gttttgcaaa
     2041 aaatccggct aaacagaccg cttgctagcc gtaaaaatgc ccgaattttc ctaaaaaagc
     2101 gaatatcggg cattcctcaa tctgcttatc acaaaataag tgtgatgaag ttcacatttc
     2161 atacataaac cccccccttt ttatcgaaac aaattgtttt atttttatca aaatggaaaa
     2221 tgtatttcag tttagttcta tttagattca ataggagtct gtgtatgagt tgcaacactt
     2281 caccaaaacg tttccacgcc agttgggagt cgatcaaaca gcaccaagta ccagagtggt
     2341 atgaagatgc taagtttggg atttttattc actgggggat ttactccgta cccgcctttg
     2401 ccccaccgac ctgtcagtta ggtgaaattg atattgatga acagtggttc tgtaataacc
     2461 cttatgcaga atggtatttt aattccatca atgtcaaaaa aggcccgacc tacgaacatc
     2521 atatcaaaac ttatggcgaa tcctttgcct ataacgactt cctgccacta tggaaagcgg
     2581 aaaaatggca accagcagaa tgggcgaaac tgtttgccaa agctggcgcc aaatatgtgg
     2641 tattaaccac caaacatcac gatggtttct gtctctatcc aagtaaatat accgatttca
     2701 actgtatgca agccggaccg aagcgggatt taatgggcga gctgactgaa aatgtgcggg
     2761 agcaaggctt aaaaatgggc gcttactact cgggcattat cgattggact tattcctctg
     2821 ccccgatttt caccgaaagt caaaacttct caaacgcttg cccgacttac gaatacgctg
     2881 actacgccta taaacaagtg gtagagctga tcgaccgcta taaaccagat gtattgtgga
     2941 atgatattgg ctggccaaaa gtgggcgagc atatgttacc acacctattt gctcattatt
     3001 acaacagcgt tcaagagggc gtagtggacg accgctggaa caaactatgg tgcgatttca
     3061 cctccaaaga atacaaacac ggcgtggctt cccgtgataa gaaatgggaa atgtgccgtg
     3121 gtatgggctt atcgttcggc tataaccagg tagaagacga aagccatttg atttcggtga
     3181 aagacttgat ttccctattg gtagaaaccg tagccgacaa cggcaattta ttgctgaata
     3241 tcggcccgaa agcagatggc actattccgc aagagcaagt tgaacgctta ttagcactgg
     3301 ggagctggct ggaaataaat ggagagggaa tctataaatc ccgttgtagc caacaccaaa
     3361 ccgagcaaat cggtgatgta acctatcgtt ataccaaagt tggggcggat ctctatcttt
     3421 acattgatgg cttaaccgaa gcccaaatca gcttgccact gtcagtttat ggtgagctac
     3481 aagcactcaa taccgagctg aaatttacca ttgaaaacac cgcacaaggc agagtgttac
     3541 atattcaaaa ctaccagccg gattggtatg tattaggctt taaaattgca gatggggaga
     3601 aataggtatg tccgtttcac aacgttttat tgactttatg aatgcccacg ttgctccagt
     3661 agcacgtcga atggaaaatc aaccgcatat ttccgctatt cgagacggtt ttattgtagt
     3721 gttaccattc ttaattgtcg gcagctttat tatgattttg ctaattccgc catttgatga
     3781 aaatacccaa aatgctttcg ggcaagcttg gtggcgtttt gcgaattggg caagccctta
     3841 cggttggaat ttcttccaaa tgtcgtttaa tgcgatttca ttatttacct ctgccagtat
     3901 cgcctacaac cttgccaaag cctataaaag agagcccctg ccagcggcat ttctctcggt
     3961 aatggcattt ttgttagtgg ctgcaccggt caaagacgga atgatggata ttaaattctt
     4021 tggcggtatt gggctattct ctgcgatttt tattgccatt tattcggtag aaatgacccg
     4081 cttgttggag ttcttaaaaa ttaaaatccg cttaccgaaa gaagtgccgc acgctgtagc
     4141 agaatctctg aatatcgtga ttccaatttt agcgatttta ctgactctct atccgtttgc
     4201 catttgggtg gaaagtgcca caggtcgtaa tattccacaa ctaattatgg actttatggc
     4261 gccattgatt gctgtgagtg actcgctagg ggcaatttgc ttgttcgtta ttgctaccca
     4321 tttgctctgg ttcttaggca ttaacggctc attggtacta atgcaacttt ggacaccatt
     4381 cctactgcaa aatatggcgg caaacttagc agcattccaa gctggtgaac cgctcccctt
     4441 tatcatcacc aattccttct gggatttcta tatcgtacac ggggcaagtg gtggtgtaat
     4501 agccttggca ttcctgctgg tacgcagtaa atcggcacac ttacgctcta tcggtaaaat
     4561 cggcttggtt ccgtccttct tctctatcgg tgaaccaatt gtgtatggtg tgccaatggt
     4621 ggttaatccg ctgttcttta tcccgctgat tttcgcacca ctagcgaatg cggttattgc
     4681 ctacctgatt ttagatttta accttattca ccgtgtttac ttgatggcac cgtggacaac
     4741 accggcaccg attggggcat atctggtttc tgccggtgat atttgggcac caattttaag
     4801 tattgcactg attattttgg atattgtgat ctactatcca ttcttcaaaa tgtatgaaaa
     4861 agtctgcgtc gagaaagaaa aagcacaaaa tctagatgaa aaagcacaac aggagttgct
     4921 agaaaaagca cgaatggcag cacaataaca cttatttcta gcgtaattga gaggggctaa
     4981 tcgaaagatt agcccttatt tttgcaaaaa attgacaaaa tttatccgct tgtaaacaag
     5041 aaaagcgtat aatgaaataa aaaattcaag cagagataat ttgaaatgaa tggacctact
     5101 caattagcac attttcaaga acaaatccga aaagagtatg acggactaag taaacgttta
     5161 aaacaagtgg cacagtatgt gctggataat ggcaacagcg tggtgtttga tacggtttct
     5221 accattgctg aacgagctga tgttccccct tcaaccttaa tccgttttgc gaatgcgttt
     5281 ggatttagcg gttttaatga aattaaacag ctttatcgcc aagatatgat ggaaggcaca
     5341 tcacgttaca ccgaacgtgt gcaacttttt cgtcaaattg aaccgcttga tgagcaaaac
     5401 agtgagctca atcatatttt agatgtgttc gtacagggta atacgcaggc actgcaacag
     5461 ttatcgacac aagtcagcga agagcagtta gcacaaacgg tagatatttt acacaatgcc
     5521 aaacgcattt ttattgtggg tttaaaacgc tcattcagca ttgcgaacta cctaaactat
     5581 gcgttgcacc atttggacta tgatgtcttt atgatcgatg gttcgggcgg tatgtttgac
     5641 gagcaattaa gccgaatccg tgaaggtgat gcggtgattg ccgtgagctt ttccccgtat
     5701 gcgaatgaaa cactcaacgt ggtgacagca actgccagac cgggggtaaa acatattgcg
     5761 atcactgata gccaacttag cccactcctt tcatttagcg atgtgtcgtt tattattaaa
     5821 gaagcacagg tgagtggttt tcgatcccag tgtgccacaa tgacgctcgc acaaacgatt
     5881 gccgtttcac tggcgttgaa aaaagcctag attaagaaag tgaaagacct gcgtaaatac
     5941 aggtctttgt ctattaaccg attaaagcgt taatttcatc acgatactgc ccggcttttg
     6001 caccaaaaat aatttgttgc gtatcaccga ctttaatgac atcaaccgcc ccaagctttt
     6061 tcagtgccga cttatttaat aaaccgttgt tatgtaacac cacacgtaaa cgggttaaac
     6121 aagcttcaac ttgcttgata ttctctttgt ttcctaaagc attaataatt tctagaatga
     6181 tagatttatc agacatattt cctccatacc tatttatatt taaaactctt attatgatat
     6241 tttaaacatt ttctgatggt tagaacaatt tttattagta atttgtataa aaaaacgcta
     6301 aatgtatctt tctttaaaag agtcatatca atgaatctcc cttgtctttc cgcaaaaaat
     6361 ctgtataatt tgaccgcttg ttttctcttt tgaaacaagt tcgttaccct cacctcgaac
     6421 gagggtttat tttttactat caacatttag aggaaaggtt atggtaacca ttcgtttaac
     6481 tcgtggcgga gctaaaaaac gcccatttta ccaaatcgtg gtagtggaca gccgttcacc
     6541 tcgtgatggt cgctttatcg agcgtatcgg tttcttcaac ccattagcag caggtcaagc
     6601 tgagcgttta cgcttagatg tggctaaagt agatgcttgg gttgctaaag gtgctgattt
     6661 atcagaccgt gttgcttctt tagtaaaaga agctcgcaaa gcagcttaat ttttaagcca
     6721 aaattaaata agtaggtgag tatgagcgaa caaaagatcg aagttgtcgg aaaattaggt
     6781 tcaacctatg gtatccgtgg ttggttgcgt ctctattcat cgacagaaca aactgagagc
     6841 attttcgact accagccgtg gtttttaaaa attaaaggtc agtggcagca ggtcgaatta
     6901 gaaagctggc gttatcatag caatgatttg attgttaaat tgaaaggcac tgaagaccgt
     6961 gaagccgcac agttattaac caacgctgaa attggcgtgg atttgtctgt gtttcctgaa
     7021 ttggaagagg gagattacta ttggcacgat ttgatcggct gttcggtagt aaacttagag
     7081 ggctacacaa tgggaacagt tgccgaaatg atggaaacag gttcaaatga tgtgcttgtg
     7141 gtgcgtaata acggcaaaga tgctttcggt aaacaagaac gattaattcc gtttttgtat
     7201 gaacaagtag ttaaaagagt agatctcgcc accaaaacca ttacggtgga gtgggacgct
     7261 ggtttctaac ctcaggtatg cggtgagctt tggaaaacat ttaaggcgtt aaaatgtgga
     7321 ttggtattat ttcactgttt cctgaaatgt ttaaagcaat taccgatttc ggggtgacag
     7381 gacgtgcagt taaacaaaat ctactgcaag ttgaatgttg gaatcctcgt gattttacat
     7441 tcgataaaca taaaactgta gatgatcgcc cttatggcgg tggtccggga atgttgatga
     7501 tggtgcaacc tttgcgtgat gcgattcacg cagcgaaaaa ggcggcatta gcagtagaag
     7561 gcggtgaagc taaagtgatt tatctttcgc cgcaaggacg taaactcgat caaaacggtg
     7621 tgcaaacact ggcttcaaat cagaaactga ttttaatttg tggacgatat gaaggcgtgg
     7681 acgagcgatt gattcaaaca gaagttgatg aagaatggtc aatcggtgat tacgttctca
     7741 caggggggga attacctgca atgacattaa ttgatgcagt tgcaaggttt gttcccgggg
     7801 tattaggcaa acaggcttcc gcgttagagg attctttcgc agagggatta ttagattgcc
     7861 cacattatac ccgccctgaa gtattagacg gtatgcctgt tccggaagtg ctgatgtctg
     7921 gacaccatga acaaattcgt aaatggcggt tggaacaatc gctggaacga acgtggttaa
     7981 gacgccctga gctattggat agcctagctc tgactgacga acagcgtgtg ttgttagcta
     8041 aaattaaaaa acagcacaaa atcagttaat tctaggatta tagaaggttt ttaaaatgag
     8101 taacatcatc aaacaacttg aacaagaaca gttaaaacaa gacttaccta gcttccgtcc
     8161 gggtgacaca ttagaagtta aggtatgggt agtagaaggt agtaaaaaac gtttgcaagc
     8221 gttcgaaggc gtggttattg caattcgtaa ccgtggcttg cactctgcat tcactctacg
     8281 taaagtttca aatggcgtag gcgttgagcg tgtattccaa actcactcac ctgtaattga
     8341 cagcatttct gttaaacgta aaggtgcggt acgtaaagct aaactttact acttacgtga
     8401 gcgttctggt aaatctgcac gtatcaaaga gcgtcttggc gactaattgc tacaaaacag
     8461 tgaaatgcac aaaagccttg aggaaactca aggcttttgc tttttgtact tacaagcagt
     8521 tatttttcct caatgattta caaatcttgc tttctttttt gtt
//
LOCUS       DANMGB010000101         8451 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.101, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000101 DANMGB010000000
VERSION     DANMGB010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8451
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.101"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(582..2252)
                     /gene="glnS"
                     /locus_tag="PXG19_001717"
     CDS             complement(582..2252)
                     /gene="glnS"
                     /locus_tag="PXG19_001717"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL6067001.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2413..2856)
                     /locus_tag="PXG19_001718"
     CDS             complement(2413..2856)
                     /locus_tag="PXG19_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6067002.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2907..3482)
                     /locus_tag="PXG19_001719"
     CDS             complement(2907..3482)
                     /locus_tag="PXG19_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL6067003.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3589..4479
                     /locus_tag="PXG19_001720"
     CDS             3589..4479
                     /locus_tag="PXG19_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6067004.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4546..5112)
                     /gene="efp"
                     /locus_tag="PXG19_001721"
     CDS             complement(4546..5112)
                     /gene="efp"
                     /locus_tag="PXG19_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL6067005.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            5279..5848
                     /locus_tag="PXG19_001722"
     CDS             5279..5848
                     /locus_tag="PXG19_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067006.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            5902..6894
                     /gene="epmB"
                     /locus_tag="PXG19_001723"
     CDS             5902..6894
                     /gene="epmB"
                     /locus_tag="PXG19_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL6067007.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(6994..8397)
                     /gene="asnS"
                     /locus_tag="PXG19_001724"
     CDS             complement(6994..8397)
                     /gene="asnS"
                     /locus_tag="PXG19_001724"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL6067008.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
BASE COUNT         2423 a         1811 c         1739 g         2478 t
ORIGIN      
        1 cataaattat cgtttgaatt ggctcaaagc attcatcggt ttgatggcat tattgtgcct
       61 tcatttgatt ctgctaaaat cttatatagt tcattttgtt tatcaaataa gataccacct
      121 aaaatataca cctgctataa aaatagcttt aataatgatg accgattttt tcaatataga
      181 ttagattacg attttatttc taatcagatc ttatctattc ttcgagaaga caatgctatc
      241 ataaaagagc atcacttttg gtttccaaag attatagaaa gctcaaataa tacactacct
      301 cataatttaa aatgaaacgt ttcaattgga aaaagtggat tttgtgactg agatcacaaa
      361 tttaaacatt ggtctgtatt tttgagagat tttgtttgaa actgccggca aattcgctta
      421 accttaaggt aacaagaata agtgttgtac ctagcaacct aacacataaa tttgctttcc
      481 gagtggcccc aagaattggg gcttttttta tgcttgatga gtcgttttga gagtaaaaaa
      541 ataccagcat atttgctggt atttgaatga agagagttag attagaacgc tacgctttct
      601 tttaagctga cagttaagtt aaatacaagg ttgtctgccg aaccatcttt gctgtctaag
      661 cagtagtaac cttcacgctc gaattggtag tcttgttccg gtttggcgtg agctaaactt
      721 gactcaacaa aaccatgctt aaccactaat gattcaggat ttagcaccgc attgatgtct
      781 tcttccgccc ccgggtttgg tactgtaaat aggcggtcgt aaatgcggaa ctctgccggt
      841 ttgttatctt cagcagatac ccaatgaatc acgcctttta ctttgcgacc atcagccgga
      901 tttttgccca atgtatccgg gtcgtatgtg caaaaaatag ttgaaattcg accgcttgca
      961 tctttttcca cacgctcagc tttaatcaca taggcattgc gtaaacgaac ttctttgcct
     1021 aagactaaac gtttatattg cttattggct tcttcacgga agtcggcttc atcaatataa
     1081 atctcacggg tgaacggtaa atcacgctcg ccaagctctg gacgatttgg gtgattaggg
     1141 gcttttaata tttccttttc accgaagttt tcaatcacca ctcgaaccgg gttaatcacc
     1201 gccatcgcgc gtggtgcgtt ttcatttaag tcttcacgaa tgcacgcttc aagggcagag
     1261 tattccacca cgttatcttg cttggttacc ccaatacggc gacaaaattc acgtaaagac
     1321 gctggggtat aaccacggcg gcgtaagccg gaaatggttg gcatacgagg gtcattccaa
     1381 ccatcaacaa tgccgtctgt gactaatttt aataatttac gcttagaggt taaagtacct
     1441 tctaaattta aacgtgaaaa ttcgtattgg tgcggtaacg gtctttcaat cgaaatattg
     1501 tccagcaccc aatcatataa gcggcggtta tcttggaact ctagcgtaca tagcgagtga
     1561 gtgattcgct caatcgcatc ggaaatgcag tgggtaaaat cgtacatcgg gtagatgcac
     1621 catttatcac cggtttgatg atggtgagca aatttcacac ggtaaagcac cggatctcgc
     1681 atcacaataa acggggacgc catatcaatt tttgctctca agcaggcttt cccttccgca
     1741 aactctccgt ttttcatttt ttcgaataac gctaagtttt cttccacgct acgatcacgg
     1801 taagggctgt ttttgcccgg ctcggttaaa gtaccacggt attcacgcat ttcatcaggc
     1861 gataattcat caacataggc taatcctttg ttgattaact caatcgcata gccataaagc
     1921 tggtcaaaat agtctgaggc ataacgaggc tcaccctccc atttaaaacc tagccactcc
     1981 acatcttgct taattgaatc tacatattcc acgtcttctt taaccgggtt ggtatcatca
     2041 aaacgcaagt tacataaacc gttataatct tgagcgatac caaaatttaa acagatagat
     2101 ttagcgtgtc cgatatgcaa ataaccgttt ggttcaggtg gaaaacgagt gtaaacattg
     2161 ttgtgctttc cgcttgctaa atcttcatca ataatatggg taataaaatt ggctcgagtg
     2221 ccagtttctg ccgttaaaat ttcttcgctc atagttctct ctaaatgtat caataaaaat
     2281 aacggattat tctacactta attgaaacag acttaaagac taaagcaaaa ttcctcggtt
     2341 tcctccaaag aattttgctg ttttagtaag atgcaatgga attgcaaatt tttagctaaa
     2401 tttaaccgct tgttattgcc tgatttcacg gctttcgctg atcataaaat tcgcaatccg
     2461 tttggcaatc cgccatttac cctcttgttt aacataggta tcggcataac gcacgctgtg
     2521 atcgtgcaag atctctttgc cctctttggt ttctaccagt ttcaccgcac aatagttgat
     2581 cgctgtggcg ttattttcat caataaaagg cacggtatgc tgaccgttta aatgataaac
     2641 gctgtgaaac ggggttaaaa aggtggtaaa cacctgttcg atttctgcca cgccgtgcat
     2701 ttcaaacacc aattttccgc cgatgtaggt gtttacgacg gcatcttgcg tgaaaagcgg
     2761 catctgctcg gcaacctttt tttcatcggc aaggttagag aatgtatcta ctaaatcttt
     2821 tagtgctaaa cgatcttgga tttgttgtaa gttcattgtg ttttccttct gatttttgca
     2881 aattttcttt ggtttttcac cgcttgttag gctgcaatac caacactttc acggatttcg
     2941 ctgttttcac gcaaaatgcg agccacaaaa tcggcaatgg atttgcggga aacgctgtgt
     3001 cctttgaacg gttcgccttt gtgagtcagc tgatattgca cttccgaacc gttggtaaac
     3061 cagcccgggc ggacaacggt ataatccaac tcgctggctt caatcacggc tgccgattgg
     3121 cggtaaggct ctaaaattgc cccgtgatct tcgccggttt cgccataaat ccccattgag
     3181 ctaatccaaa ccaagcgttt tacctgagct tcattcattg cgttcaccac atttcccgcc
     3241 atcgctttta agtcgccggc aagtccagcg taaacggcat caacgccttg cattgcttgg
     3301 gttaatgcgt ggaaatccaa cacatcgcct tgcacaattt tgacgcgttc agtttcaaat
     3361 ttcgctactg attgcggacg acgggcaaaa agggttaatt gcacattatt gtcttttagc
     3421 agttcaggaa tcacgacatt cgctaggcta ccgcttgctc ctaaaattaa gatctgtttc
     3481 attgctgttc tccattgaat gaagtcagta tagcggtgta gattgcattt gattagtagg
     3541 gtaaaatcgc ttgaagtaat gagaaaaatt cattaataag gtggttaaat gaaagaaaac
     3601 ctcaacgatt taagagcttt tttgttggta gcacaaacga gcagttttac caaagcagca
     3661 gcacagatgg gcgtgtcgca gtcggcgttg tcgcacagca ttcgggggat tgaagaacgg
     3721 ttgcaaatca agctgtttca tcgcaccact cgtagcattt caaccaccga ggcaggggag
     3781 aggctgtatc aacggctgtt accgctgttt gatgaaatcg accaagaagt aaatgggctg
     3841 agtgagtttc gcaatgcgtt aaaaggcggg ctgagaatta acggtaatga acacgttttc
     3901 cgtgatgtgc tggcagataa attcgctgag tttgtcaaac gttaccctga agtagcattg
     3961 gagctagtgg cggaagatcg ctttgtagat attgtcgccg agcgttttga tgccggtatt
     4021 cggcttgggg cagatgtggc gaaagatatg attgcactac gcatttcgcc cgatgtgaaa
     4081 atgaccgcag ctgccagccc caactatttg gcacagcacg gcacgccgaa aacgcccttt
     4141 gatttaaccg aacatcattg tctcaaacat cgtcttgcga cattgggcgg cattctggcg
     4201 tgggaatttc gggatcccat caccaagaaa atcgttaaat ttcaaccgca gggcaatctt
     4261 actgccaata acggcttctt gctgcaacac tatgccaaac aaggtttagg cattctttgg
     4321 agtccgcaag acagcattca aaccgagctg gataacggca gcctcgtgcc gattttaacc
     4381 gactgggcaa tgcagtatga gggctatcat ctctattacc ccaaccgtcg ccaaaattcg
     4441 cctttgctga aagcgttaat tgatgtgctg agaggatagg taaaaatgag cggtcgtttt
     4501 tagcaaaaaa ttgaccaaaa aacgaccact tgtagagaag ctaaattatt tcacacgaga
     4561 aacatattcg cctgaacggg tatccacacg gataacttca ccgatttgaa cgaataaagg
     4621 cacgtttacc acagcaccgg tgcttaatgt tgccggttta ccgcctgtac ctgcagtatc
     4681 gccttttaag cccgggtcgg tttcgacgat ttctaactca acgaagtttg gtggtgtgac
     4741 tgcaattgct gaaccgttcc ataaagtcac gatacattct gcattatcaa ctaaccattt
     4801 tacgttgtcg cctaacgctt tttcatctac cgagatttgt tcaaaggttt cagggtgcat
     4861 aaagtaccag aaatcaccat cgctgtaaga gtagttgtag ttagaatcta ctacatctgc
     4921 tgcttcaacc gaagtgcctg atttgaagtt gatctctaat actttgccag agattaattt
     4981 acggatttta gtacgggtaa atgcttgacc tttacccggt tttacgaatt cgttttcaac
     5041 aattacacaa ggttcgccat cttgaataaa ttttaaacct tttttaaagt cgttagtgct
     5101 gtagctagcc attatttcct caattattta aaaaataaca ataaattaac aaattttgaa
     5161 cccaacccta ttgggtttgt caaaaagagc catataataa cctaaattca caaaattagc
     5221 gaaagatctc ttgcgatttt tgctataatt tttcaaactt tattgataag gaatgcgaat
     5281 gaaaaaactg attactcttt ctgcgatttt agccgtttct gttgcaaccg tggcagaggc
     5341 aaaacgtggc ggtgggagct tccgttcagt tagcccgtca aaagcggtag caactaagcc
     5401 ggtagcttct caaaaatcaa ccacaaatca gcaaacgcaa caaaaagatg ctacttttgc
     5461 caatacgcca aacagtgcaa ctgcccagcc acaagtgcgt caaggcagca cgatggcaaa
     5521 tgtagcgatg ggggcagcag ccggttatat tttaggtgat atgatgtcat caaatgcaca
     5581 tgcaaatcag cctagccagc ctgcggatgc aaatgcacaa gcggtcaatt ctgcacaaaa
     5641 tgttgcaaat ggagcagttc ctgctattgc agaatttaag agtattggcg gtcaaatcga
     5701 tccgttttta gtagaaaaaa ccgatggtta tcgccgttat tgtatttcag gcgtgcaata
     5761 cctagtcgct gcacaaggtg tacaaacctc accaactgta atggttaatc caaatggcac
     5821 gccattacaa tgtaacttaa ttccataatt atttttattt gcgggcaggc aaaaacctgc
     5881 cccttgtatc tacaatattc aatgcaacca attcaaatca aaccgctttg gctaaccgag
     5941 ctggctcaag cctttaataa ccctatcgac ttattacaat ttcttgaact caatccaaat
     6001 gattttgagg gcgatatagc tgcccgtaaa ttatttgctc ttcgagtgcc aagaatgttc
     6061 gccgaaaaaa tggaaaaggg taacccaaac gatccgcttt ttttgcaagc aatgtcttta
     6121 caggcggaat ttattgaggc agaagggttt gtggtagatc cattggaaga gcaacaaagc
     6181 ccagcaccga atattttaca taaataccat aaccgtttgt tatttatgct aaaaaacagt
     6241 tgtgcgatta actgccgtta ctgttttcgc cgtcatttcc cttatgagga agtgaaaagc
     6301 ggtaaagctg tgtggcaaca gggactaact tatattgctg agcatcccga gctggaggaa
     6361 gtgattctgt ccggtggtga tccgctgatg gcaaaagatc aggacttaga ttggatatta
     6421 acgcaattag agcagatttc gcatatcaaa accctgcgta ttcattcacg cttgccggtc
     6481 gttattccca atcgaattac gacagaatta tgtgaacggt tatcaaaatc tcgcttgaat
     6541 gtcgtgttgg ttacccatat taatcacgcc aatgaaattg atgctgtttt tgcaaacaaa
     6601 atggctcaac tgaaaaaagc cggcgttgta ttgctgaatc aatcggtgat gttaaaaggt
     6661 gtaaacgata atgctcaaac cttaaaaagg ttaagtgata aactttttga atatgggatt
     6721 ttgccttact atttgcattt atttgataaa gtggcagggg cgagccattt ctatattgaa
     6781 gatgaacagg ctggtgagat ttaccgagaa ttacagcgta tcacttcagg ctatcttgtg
     6841 ccaaagctgg caagagaaat agcgaaagag ccaaataaaa ttttgaaagg ttagcttaaa
     6901 cagaaatcaa gaaacaaaag gcgaaaatgg taaaattttc gcctttttta accgcttgtt
     6961 gcaagcggtt aaattctctt acttttttgc aaattagaag ttcgcattgc gtggagcacg
     7021 tgggaatggg attacatcac gaatgttttg taacccggtt acatacacga ttaaacgctc
     7081 gaaacctaaa ccgaaacctg agtgtggcac tgtaccgtat ttacgcaaat cacgatacca
     7141 ccagtaatct tcagggttta agcccatttc attcatacgc tgatctaaca cttctaaacg
     7201 ttcttcacgt tgagaaccac cgataatttc accgattccc ggagctaaaa cgtccattgc
     7261 ggcaaccgtt ttgccgtcat catttaaacg catatagaag gctttaatgt cttttggata
     7321 gtttttcacg accaccggcg atttaaagtg ttcttcggct aagaaacgct cgtgttcaga
     7381 ggaaagatcg attccccaag acaccgggaa ttcaaattct ttgccggatt tcaataagat
     7441 ctcaatcgca tcggtgtaat ctacttgagc aaatggcgaa ttgataaagt tttctaaacg
     7501 actaatcgct tctttatcaa cgtgtttaac gaaaaattcc atatcatctt tacgttctgc
     7561 aagcaccgct ttaaacacat atttcagcat atcttcggct aattttgcat tgtcgtttaa
     7621 gtcggcaaag gcaacttccg gctccatcat ccagaattct gcaagatggc gagttgtgtt
     7681 tgagttttct gcacggaatg tcggaccgaa agtataaact ttacttaagg cacacgcata
     7741 ggtttccgca tttaactggc cggatacggt taagaacgat tctttaccga agaaatcttg
     7801 gttaaaatcc actttgccgt tttcgccacg aggtagattt tctaaatcca gcgtagaaac
     7861 acggaacatt tcacctgcac cttcagtatc tgaggcggta attacaggtg ttgctaccca
     7921 atagaaacct tgctcgtgga agaaacggtg gatagcttga gctaaacagt gacgaacacg
     7981 agcaactgca ccgattaagt tcgtacgagg gcgtaagtga gcgacttcac gcagatattc
     8041 gatagagtgg cgtttcgctg ccattgggta ggtatcagga tcttccaccc aaccaagcac
     8101 ttccacttta cttgcttgta attcaacggc ttgaccttca gcaggggatt ccacaacttt
     8161 accggtcacc accacagagc aacctgcggt taaatgtaat acttcggcat tataatttgg
     8221 tagatcgtta ttaataatcg cttgaattgg gtcaaagcaa gaaccatcgt aaacgctcaa
     8281 gaaagataaa ccggcttttg aatcacggcg ggtacgcacc caaccacgca ctgtcgcttc
     8341 ttcacctacc gctatcttgc cggataggat ttccgaaact gttggaaatt tagacattga
     8401 atacctcaaa ttctttgttg tgagttttaa tataagaaac gttccgtatt c
//
LOCUS       DANMGB010000102         8416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.102, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000102 DANMGB010000000
VERSION     DANMGB010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.102"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            19..3177
                     /locus_tag="PXG19_001725"
     CDS             19..3177
                     /locus_tag="PXG19_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL6067009.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3211..6102)
                     /gene="glnE"
                     /locus_tag="PXG19_001726"
     CDS             complement(3211..6102)
                     /gene="glnE"
                     /locus_tag="PXG19_001726"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL6067010.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6274..6555)
                     /locus_tag="PXG19_001727"
     CDS             complement(6274..6555)
                     /locus_tag="PXG19_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL6067011.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6557..7021)
                     /gene="yciA"
                     /locus_tag="PXG19_001728"
     CDS             complement(6557..7021)
                     /gene="yciA"
                     /locus_tag="PXG19_001728"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL6067012.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7011..7568)
                     /locus_tag="PXG19_001729"
     CDS             complement(7011..7568)
                     /locus_tag="PXG19_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL6067013.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7577..8386)
                     /locus_tag="PXG19_001730"
     CDS             complement(7577..8386)
                     /locus_tag="PXG19_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6067014.1"
                     /translation="MAQALLYFTTKYLQSIEGYFMSIKFVDLLQQSWNFMRNQQAFSL
                     FAIVTIVVVQLVFILVSPNSPELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINV
                     LMIFNIQSINDGNYRQFFQNAGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVII
                     ALPVLVVGFYFFIKLSLVIYAYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYL
                     LPGMLSRLFTVFGNDFIGIFITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
BASE COUNT         2475 a         1832 c         1806 g         2303 t
ORIGIN      
        1 tggggagatg gagttgtgat gattaccatc aacgaaaaca ccattgaaca atccgccatt
       61 gcaactttgc aaagcttggg ctgggactac acctacggca aaaaaatttt ggcaggttta
      121 gaacacgaat ggcgggagcg aaccgctgag gtgattttaa agccgctttt ggcgcaagcg
      181 attgcaaaat tcaacccgaa tttgcccgct tgtgaggtgg aaaatgtggt ggcacaggtg
      241 tgccgtgccg acagtggcga tttggcggag cgtaatcgtc aggcttatga ttggctaaga
      301 aatggggtca aaatcactta tcagttgtac ggtgagcagg tgtctgatgt ggtgcagctg
      361 attgattttc agcgtccaga aaataacgat tttcgcattg tcaatcagct ggatattagc
      421 ggcaaaaaag gcaaacgcat tccggatttg attggctttg ttaatggctt gccgctggtg
      481 gtgtttgagc tgaaaaatcc gctcaaagaa aatgccgaca ttggcaaggc gtttgcccaa
      541 ctgcaaacct ataaagatga aatttctgat ttgtttgtgt ttaatcaggc actcgtgatt
      601 tcagacggca ttgtcgcccg catcggttcg ctgaccgctg atttcgaccg ttttacccct
      661 tggcgtgtgg ttgatgaaaa aaatcagagc aaacgcattg tgtttgaaga tgaactcacc
      721 gccctgctgc aaggcgtgat gacacccaaa aatctcttgg attatgtgca gaattttgtg
      781 gtgtttgaac gggacggcaa aaaccgctta attaagaaaa tcggagcata tcatcagttt
      841 tatggcgtga atgaagcggt ggattgcacc ttgcttgccg ccacaggcaa ccgcaaaatc
      901 ggcgtgtttt ggcatacgca aggttcgggc aaatcgcttt cgatgctgtt ttatgcaggt
      961 aaagtattaa gccaaagcag cctgaaaaat ccaactttgg tgttggtaac cgaccgcaac
     1021 gatttggacg gtcagcttta cgccactttt tgcggtggcg aggcactgct caaacaaacg
     1081 ccaatccaag ccgatgggcg agacgaactc cgctctgccc ttgccagtcg ttcggcaggc
     1141 ggtgtgattt ttaccaccat tcaaaaattc ggcttaatgg agggtgagct tgcccaccct
     1201 gtattaaacg agcgggaaaa catcattgtg attaccgatg aagcacaccg ctcacaatat
     1261 ggttttagcc aaaaaatcaa ccacaaaggc gagtatcgtg agggttatgc caagcattta
     1321 cgcagtgcat tgccgaatgc ctcttttatt ggctttactg gcacaccgat tgaacttgat
     1381 gacaaagaca cccaagaagt cttcggtaaa tatgtctcga tttatgattt tgaagatgcg
     1441 gtggaagatg gggcaaccgt gccgattatt tatgagccac gccaaatcag cttaggcgaa
     1501 agtggcgagt tttccaaagt gatggaagag gcacaacaac tgattgatga cgatgaaaac
     1561 agctataact tccgcctgcg tgaaaaactg cacagcgtgg atagccgttt gcaaaaaatg
     1621 gcggaagata ttattgccca ttacgatgag cgtaccaaac agcaagacgg caaggcgatg
     1681 gttgtggtga tgagccgtgc catttgcgtg aaattgtacg aaaaaatcac cgcacttcgt
     1741 ccagaatggc actcaaacga tgtgcttcaa ggcagcatta aaattgtgat gacaagtaat
     1801 gccagcgacc ctgccgagtg gcaaaaacac aatcaggata agaaaacctt agaaaaacgc
     1861 tttaaagacc cagacgatcc gctcaacatc gtgattgtgc gggatatgtg gctgacaggc
     1921 tttgatgcgc cctgctgtaa cacaatgtac attgataaac caatgagcgg acacaacctg
     1981 atgcaggcaa tcgctcgggt aaatcgggta tttcgcaaca aaagccgtga aaatggcggc
     2041 ttgattgtgg attatgtggg cttgaccgat gagctggaaa aagcgatgaa gcagtacacc
     2101 aacgcaggcg gtaaagaaaa gccggtgcgg gacatttcag cggtgctgga aaaaatggtg
     2161 gaacatatca cggtcattcg tgggcaattt gccacaccga ttgacggaca agcggttgat
     2221 attgccaaaa tgttgcaaat cagcgaaccg cctaaactgc tcaatgcgat tttgacatca
     2281 gccaaccata ttcttgccct agaccgcatt cagccacctg ataacactgc caaagacaaa
     2341 accccacgca aaaacgcctt tttgcaatcg gtacgcttgg cgaaaaaagg ttatgctttg
     2401 tgtggggcat taaaagcagt tgaaccctat aaacaggaac tggcgtttta tgatgcagtg
     2461 cgtgccacca ttatcaaaaa cagcaccgct cctcgcaatt cttcgagcga aaatgaccgc
     2521 ttgttgcagc ttaccgcctt gatgaatcgt gcggtacagt cggatggtgt ggtggattta
     2581 tttgatttgc tgaaaaaaga ccgcccaaac atcaacctgc tttctgatga gtttttggaa
     2641 acagtaaaaa acagcccaac caaagatttg tggctatcag caatggagcg ttatcttgcc
     2701 tcacaactgc gagagcaaag cggtgccaat cttgccacaa aaaaagcatt tgaacagaaa
     2761 ctcaaagagg cgatgaacca ataccacaac cacaatttaa gcgtattgga aattttagaa
     2821 gagctgatcg ccctcgccaa agagtttgaa gcccgccaaa aacgagggga agcgttggga
     2881 ctaagccctg cggaaatggc gttttatgat gctttggcac gtaatgaaag tgcggtgcgg
     2941 gaaatgggcg atgaggtatt gatgaaactt gccaaagaca ttaccgataa attacgcaaa
     3001 tcggtcaccg tagattggca atataaagac tcggttcgtg ccaaaatgcg aaccttaatc
     3061 cgcattgctc tgcgtaccta taaatacccg cccgatttac aggcggaagc gattgagttt
     3121 gtgttgcaac aagcggaaga gatcgccgga gagttcgcta tcaccgaaac ggcgtaatct
     3181 atattagggc gtgcaatgta cgccctaaat ttatgctaat aacctctgcc acatttcccg
     3241 cacaaatgct cgctcggtgg taaattcact tgcgtccacc acgctgtctt tgcgtaataa
     3301 gtttaggtgg tggattttgt tacgcagtgc ggtgtagcaa tgttgtagct gttcgctttg
     3361 ttcggaactt aaaataccgc attctactgc gctgtcgaaa attcggacat tatccgacca
     3421 tactgccatt ttcgggtgtt ggtggctgtg ggctaatacc aaatattggg cgataaattc
     3481 aatatcggta atacctcctt gatcttgttt aatatgaaat tgctcggctg aatgcgagct
     3541 taaatgttgg tacattttct gtcgcatttc gcaaatttct tggcgtaatt gaccgcttgc
     3601 acgaggctga gcaagcgtgc tttggcggat tttttcaaag gcttgtttga ggttttccgc
     3661 cccaaataca catcttgtcc gcacgagggc ttggctttcc cacgtccacg cttcattttt
     3721 ttgataatgc tcgtaggcat tgaaagtgct gactaaaagc ccagcctcgc ctgatgggcg
     3781 aagtcgcata tccacttcat atagtacgcc ggcactggta ttaaggttaa aaatcgagtt
     3841 aattttttga gccaatttta agtaaaattg atggcttgaa atctcttttt taccgccaac
     3901 agtttggcta tcctctgggg cattatgcaa gaaaaccaag tcgagatctg aattatagcc
     3961 cagttcaatc ccgcctagct tgccgtagcc aataactgca aacccttttt catcagcctc
     4021 taaatgttcc ggcacaccaa agcgttggct gacttgcttc cacgccatat ttaccaccgc
     4081 attaataatc gcttctgcta agtaagtaag atgatcgctg atcttcatta ccagcagcac
     4141 gcctaaaata tcagcagcgg cgatgcgtaa aatttgggtt tgtttgaact gacgtaagcc
     4201 atcaatcagt gcttcttcat cttcttcagg aatgcggatt aaataatcct gcaaggcaga
     4261 ttgatatttt tcaaaagcct gcacgtcggt taagcctcta tggctcatca gctcatcaag
     4321 tagcattgga tatcgagcta tctgttccgc aatcataacc gacttactac acaatgctaa
     4381 aagttgaggc agaatctgct ctttttcgag cattaattcc aaataggtag ttcgggtggt
     4441 gattttatcg acaatattca acacgcgagg caataacaat aaatgatctt cacctttaaa
     4501 aatgctgtcg gcaattctag gcattaaatt gcgtagcacc tctcgccctc ttaccccaat
     4561 cgggcgtttt acccaatctt gaaaggtagt agaaaagtga cggaaaatct ccgtataatc
     4621 attttctgca acctttggat aaccttttag cactgcggat aaatcttcaa ggcgaatgtt
     4681 atagtgcaaa atgtctttcc attcggctaa tttttcatta accggattgc agttggcttg
     4741 tgtttcctct tcaccgataa tttcattaaa aatctggcgt actgcttgtt gatattggct
     4801 caatactgcc ataaattgtt gccaatcgtt aaaggaatgc tccacccaat gcgttttttc
     4861 gctatataga tcttgctgat aatagctttg gcaagcaaat acaaggcggg cttgcgaggc
     4921 ttcatcagtg ggtagggttt gagtttgttt atcgtcaatc gcttgtaata cattttcaat
     4981 ttgacggtaa aaaatatagg cattgtggag cgtttccacc tgcgtttggg ttaataaatt
     5041 taattctgcc aagcgtggta gcacttttaa caggctacgt tcttgtaaaa ttttatctcg
     5101 cccgccacgg atcatttgga aagtttgggc gataaactcc acttcccgaa tcccaccggc
     5161 accaaattta atattatcgg ttaaattacg gcgaaccact tcacggctga ttttttcttt
     5221 catttcacgc aacgattgga ttgcactgaa atccagataa cggcggtaaa caaaagggcg
     5281 gagcatttgc tttaaatagc gatgatttaa attttggcta tcctcgccta aaatttttgc
     5341 tttaatcatc gcataacgtt cccaatcacg cccttgctct tggtaataat cttccattgc
     5401 agtaaaactc agcaccaagg ctccgctatc accaaagggg cgaagtcgca tatcggtacg
     5461 atacacgaaa ccatcagcgg tgatctcatc taatacttta attaaccgct gccccattcg
     5521 ggtaaaaaat ttgctgtttt caatcgattt gcgtccacct tcggtttcac caatatcggg
     5581 gtaggtaaaa atcaggtcaa tatcggaaga aaaattaagc tctcgtccgc ccaatttgcc
     5641 catacctaaa atcagcagtt cttgtgtttc gccaagagtg ttctttggcg tgccatattc
     5701 ggcacagcaa cgctgaaaca accaatctcg agcggctaga atcaggctct cggctaaatc
     5761 cgacaaatgc tgaaatacca attctaccgt cgctaattta tttgactgaa taaagctcag
     5821 acgagccaat tcacggtggc gaaattgccg caaaaccctc cccaacattt cttcattttc
     5881 cactcttgct aatatttttg ctaaacgctc agtataattg cagcaatcat caggcgtagg
     5941 aaacttggca agccattctg ccagtaaatc cggctgtttt tgcaaggttt gatgcacgaa
     6001 attggaaagc gaaatcgccg tcacaagcgg ttgaatttgc tcagaatttt gcaaattggg
     6061 cggtaaattg agttgggata agggaattag ggtggtaagc ataaatttag gctcaaaatt
     6121 gaaaatagat agaattttac gctcgatcaa ttcccctctt tagcaaagag ggcttagggg
     6181 agatttggca gaggtaattt tactctcata cgaaacatta atatcgtaat caaatctccc
     6241 ccagcccctc ttttctaaag aggggagaaa aaattaaaac actcttttaa acggtttaat
     6301 aatcacatcg ctatacacac cggcttccac ataaggatct tggcttgccc attgttgagc
     6361 ttcttcaagt gagttgaact ctgcaattac agttgaaccg gttacgcttg agccgtcttc
     6421 agtcgggtta ggccctgcga ttaataatcg accttctgcc tgtaattttt ccaaacgagc
     6481 caaatgagcc gggcgaactt ctaaacgttt ttccaacata ttgggattat cttgggcaaa
     6541 gataacataa tacatactat tctccttgtt tttcaggggt taaatcaatt agcgataatg
     6601 cttcgtctaa ttcggggtta ttttctctcg gcacagcacg cggtttgcct tctttatcaa
     6661 tcgctacata ggtaaataag gcttcggtta cgagataacg ttcgcgattg ccctcataaa
     6721 cttgtttgat aaagacctcg actttcactt gcatcgaaga acgccctatg tgcattaact
     6781 tgccgtagca gcagaccaca tcaccgactg aaatcgggcg gtggaaaatc attttatcta
     6841 ccgttaccgt aacgactcta ccttttgcca actctttggc taaaattgca ccgcctaaat
     6901 ccatctgcga cataatccaa ccgccgaaaa tatcgccatt ggcgttagta tctgacggca
     6961 ttgccaaagt tcttaaaatc agtttccctt ccggggcttt tccatagggt ttatctttca
     7021 tttttttgtt cctgcttttc agcatctttt aagtaagggt aaaggacgaa accggtaata
     7081 accgttgcga ctaaggttaa gccaataatg ccaaaggatt tgaaatcaac ccaaatctct
     7141 tccgataaat attgactgat ataaatattc agcagcatac aaatcagaaa gaatactgcc
     7201 caaccgaagt ttattttatt ccacactgct tcaggcaact gaatttcttt gcctaataat
     7261 tttttgatta atggtgtttt gaacacaaat tggctcacta atagcaccaa tgcaaacaga
     7321 gcgtaaacaa tggttacttt ccattgtaaa tatttaactt cattaaaata ggcactcagt
     7381 aagccgaaaa agaccaccga gccacccata ataatttgct gtttttcaat tttgccgtag
     7441 agcattttta aggcgatcat ttgcacgatt gtagcgataa ccaatgcgat agacgccatc
     7501 tgaataccgc tcattttata cacgacaaaa aacagaatca gcggaataaa ttcaagtaac
     7561 tgtttcattg atactcctaa cgcactgccg gcatttggcg gtaaacttgg taaaagcgga
     7621 agctgaaaat cgccataaag acgttaatta ccgcacttaa aacaatggta atgaatatgc
     7681 caataaagtc attaccaaac actgtgaaca aacgagataa catccccggt aataaataag
     7741 aaatcacaca aaataaaatc agcggtagca tttttccacg tgataattga agcgtaaatt
     7801 taatactttc cgatagactt ttctgcggtt tctccaataa ataagcataa atcactaacg
     7861 ataatttgat aaaaaaataa aaaccgacta ccaacaccgg caatgcaata atcactgttt
     7921 caggcgatgc cattgcaaaa gatgcaccga gagaaagcgg taacaccatc acaaattgta
     7981 acaacagcac aggtaggaag tgctttaatg cgtttcctgc attttggaaa aattgacgat
     8041 aattgccatc gttaatcgat tggatattga aaatcattaa gacattgatc aaaagattga
     8101 caacacctaa taaaatagtt ggcaatagta tagacaccat tttagaggca tcaatttgaa
     8161 gttgttgcgg ttgcgactcc gccattagct caggcgaatt tggcgacact aaaataaaaa
     8221 ccaactgcac aaccacaatg gtgacaatgg caaacagtga aaatgcttgt tgattacgca
     8281 taaagttcca actttgctgc aataaatcga caaatttaat tgacataaaa tacccttcaa
     8341 tagattgtaa atattttgtt gtgaagtata gcaaggcttg agccaaactg cattaaccta
     8401 ttgtagattt taatca
//
LOCUS       DANMGB010000103         8269 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.103, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000103 DANMGB010000000
VERSION     DANMGB010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8269
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.103"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            177..554
                     /locus_tag="PXG19_001731"
     CDS             177..554
                     /locus_tag="PXG19_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL6067015.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            643..1230
                     /gene="yihI"
                     /locus_tag="PXG19_001732"
     CDS             643..1230
                     /gene="yihI"
                     /locus_tag="PXG19_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL6067016.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            1244..1711
                     /locus_tag="PXG19_001733"
     CDS             1244..1711
                     /locus_tag="PXG19_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL6067017.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            1711..3078
                     /gene="hemN"
                     /locus_tag="PXG19_001734"
     CDS             1711..3078
                     /gene="hemN"
                     /locus_tag="PXG19_001734"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL6067018.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            3152..5485
                     /gene="lptD"
                     /locus_tag="PXG19_001735"
     CDS             3152..5485
                     /gene="lptD"
                     /locus_tag="PXG19_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL6067019.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXG19_001736"
     CDS             complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXG19_001736"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL6067020.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
BASE COUNT         2504 a         1602 c         1819 g         2344 t
ORIGIN      
        1 gtagttcctt tttgatgtat caatactaaa aataacctgt attattctag cagatttctg
       61 ggtaatcgag gagttgataa catttaaaaa ttagcgtttt gcaaaatttt ccaaaaaaag
      121 accgcttgtt aggctataat agccaaccaa acagaccaat tcaaaggaga atcggtatgg
      181 aatatcaatt tacccatagt attcacgggg tggtggcaaa atgttcgatg gatcacgagg
      241 cgtttgctcg ttggttgaat gccgaaataa cggaaaatcc tagccagtta gcccctattt
      301 tcgctgaaat agagaagtgt cgagccgcat ttccgaatca ttatgaatgt gtgtttgaag
      361 ggcgggagta tagtctctat tttgattatg atgaagtgat ggcaaaagca aacaatttag
      421 atgctgcttt tgatgatgag gaaatggaag aaggctttca attttacaat gaagagagca
      481 tcgcattttg tggcttagat gactttgaga aatttttgaa agcctaccaa cattttgtgc
      541 aaacttatca ttgattgaaa tgattaattg aaaccaaagc tattaaggga atctaattcc
      601 ttgtagaata gccgtttata gcaattttaa gatattaaat ttatgagtcg tactaaaaaa
      661 acacgtcgta ttaccgacat tatgccggca agaaagaccg ataaacctaa acagcccatg
      721 cctaaattag gtggggggaa aaatcgcaaa ctgacccgtt atgagttaga tgctcaagcc
      781 cgtgaggaaa aacgtaagcg taaacataaa ggcttgccga caggctcacg caatgctgat
      841 ccggcagagc agaaaaaagc agtggtgaaa gaggtgaaag atccgcgtat cggtagccgt
      901 aaaaaagtgc cgttaatggt ggaatttgtg aaccagccgg aaaaagggcg gacgattaag
      961 gctgtgccgg ttgagccaat caaaccaacg ctttcaccgg aacaagagct ggagcagtta
     1021 gaaaataacg aatgtttaaa tcagttgtta gatgatttgg aggcgggcaa aaccttatcc
     1081 gcagaagatc agaaatttat gaatgaatgt ttagatcgca ttgatgaatt aatgactgag
     1141 cttggcatcg aatatgaaga tgaagagggc gataatggcg atgcgttatt acgccaattt
     1201 gaaacgatgg atattaataa attccgctag gtagccgatt atgatgctaa gaatattcct
     1261 gatggtgctt gccgctttga ttttaatttc gctgggcggg tatgcactgc acttaatgct
     1321 gaaagtgcga gctcagaaaa agcacgaaca agcactgatt gaacaggcaa agcaagcaca
     1381 aaaagatcgt tatattcgga ttttagacag cattgaagtt attgctcggg caatgatttc
     1441 agaacagtgc gatttttcgg aaggcgtttt acgtttaaaa ccgctattag atgttctcgg
     1501 cagaaaatta agcgactata cggcgatgtg ggcgttgtat ggcgtggtag aaaatatgcc
     1561 gattttagat gaacgcaaaa atttaaaacg taacgaaaga atgaagttgg atttagagcg
     1621 ggaagcaaaa gaagcggagc ttgaatcaga catcaaaaat gagtgttacc aattattaaa
     1681 agatattgaa gaaatgagaa aggcaatcta atgtcagaaa ttatttggga tttagccctt
     1741 attcaaaaat ataaccattc agggcctcgt tatacctctt acccaacagc gttggagttt
     1801 aacgaaaatt acaccaatga agattttatt cgtgctgcag ctcgttaccc tgagcgtccg
     1861 ctttcgcttt atgtgcatat tccgttttgc cataaactgt gctatttctg tggctgtaat
     1921 aaagtgatta ctcgtcatcg ccataaagtt gaaatttatt tagattattt agagcgtgaa
     1981 attaaaactc gcgcacctct gtttcaaaat cgtttagtga cccaaataca ctggggtggc
     2041 ggtacgccga cttatttaga cgaagatcaa tcggcacgtt taatgcaaat gctacgagcc
     2101 aattttgatg tgagcgatga tgcggaaatc agcattgaaa tggatccgcg tgaaatcgaa
     2161 ttaagtatgt tggatcacct gcgtgctatc ggttttaacc gtctgagtat gggtattcag
     2221 gatttcgata aagaagtgca acgtttggtg aatcgtgagc aagatgaaga gtttattttt
     2281 gccttgatga aacgggcaaa agaacttggt tttgtttcaa ctaatgtgga tttgatttac
     2341 ggcttgccaa aacagaatgt ggaaagcttt atgtacacct taaaacgtgt ggtagagcta
     2401 aaccctgatc gtatgagcgt atttaactat gcccacttgc caagccgttt tgctgcacaa
     2461 gtgaaaatta aagaagagtt gttgccggct ccggaaacca aattgacgat tttgcaaaat
     2521 tccatcgaat ttttaggcaa aaacggttat aagtttatcg gtatggatca ctttgctaaa
     2581 cctgatgatg agttagctat tgcacaagaa aaaggcattt tacaccgtaa cttccaaggc
     2641 tataccactc aagaagagtg tgatttattg ggaatgggcg tatcggcaat cagcttactc
     2701 ggcgatactt acgcccaaaa ccgcaaagaa ttacaacaat actatgctga tgttgaaacc
     2761 aacggtattg cgttgcataa aggcattgcg ttaacccaag atgattgcat tcgccgtgat
     2821 gtgataaaag ccttgatttg taatttcaaa ttagattttg ccaccattga aaagcaatat
     2881 ggtattgatt ttaaacgtta ttttgccgaa gatttagctt tcttagcgcc gttggcggaa
     2941 gatgaattat taacgatgaa tgacgacagc attgtggttt ccccacgagg gcgtttattg
     3001 atccgtaata tttgcttatg ctttgatgtc tattcaagac aattagcgag aagacagcag
     3061 ttttcccgta ttatttaatg agcaagcggt cgattttggt aaaaattttg caaaaacaga
     3121 ccgcttgttc ccggcttata aaggaaaaat gatgaaacag cgttatagct tactttctct
     3181 tgctgtgatg gcagcttgtt atagcaacag tgccgcagct gatttaaagc aacaatgttt
     3241 acttggcgtg ccgcattttc agggcgaagt ggtagagggc gatcaactta gaatgcctgt
     3301 taccattgag gctgacagtg cggtcattaa ccagcctcgt gatgccacct acaccggtga
     3361 tgtaacgatc aaacaaggta accgttcgat ttgggcggat caggtgcggg ttgagcaaga
     3421 tggcgaaaat gcccgaatgg cgtatttgca gggtaatttt aactaccaag ataatttgat
     3481 tcaggcaacc ggttcagatg cgaccatcaa tctgctttcc aaagatgcga atttagctaa
     3541 tgctaattac caattaattg gcagacaagg gcgtggcacg gcagaatccg gtgaattcgg
     3601 caacagcaaa cacacgctga aaaatgccag tttcacttcg tgcttaccga atgataattc
     3661 gtggcaaatt gaagcgaatg aaatgattca gcacgttgat gaagaatatg cggaaatgtg
     3721 gcacgcccgt tttaaagtgc tgggaatgcc ggtattttat tcgccttact tacaatttcc
     3781 gattggcgac cgccgccgta gtgggttatt aattccaagt tttgagcgtt caagcaaaaa
     3841 cggctggaca tattcgcaac cgttttattg gaatatcgca ccgaatatgg actcgaccat
     3901 cactccaact tactattcac gccgtggttg gcaaatcagc ccggaatttc gttatttaac
     3961 gaaaatcggg caaggcttag tggcaaccga atatatggcg aaagatcgtt taagcgagta
     4021 ccaaccggga aatgatgatc gtaaacgcta tttattccac tggcgtcacg caatgagttt
     4081 tttaaccgat tggcgtttct cggtcgatta caccaaagtg agcgacagac gttatttctc
     4141 tgattttgat tcggattatg gtagcagtac tgatggctat gcgacgcaga attttaaatt
     4201 aggctactat cagccgaatt ataatatctc aatttcaggt aaaaaattcc aaaccttcga
     4261 tgagttggat atcgggcctt atcgcgttct gccacaaatt gattttaact attataaaaa
     4321 cgatctaatt aaaggcggag atttcaaatt ctttgcccaa gcagcccgtt ttgaaaatga
     4381 tagtaaatta atgccaaaag cgtggcgttt ccacgctgag ccaacactga atttcccatt
     4441 agcgaaccgc tatggtagct taaatttaga aaccaagctc tatgcaacct actatcaaca
     4501 aacgaaaggt agtgagagta cggaagaaat taagaaaagt gtaagtcgtg tactgccaca
     4561 gattaagctc gattttaaaa ccgtgttgga atccgataaa cagcttttct ctggctatac
     4621 tcaaacgctt gagcctcggg tgcaatatat ttatcgccca tataaggatc aaagcgatat
     4681 tggctcgaaa gcacatcgaa gtgtgagctt aggctatgac tctgcattat tgcaaaacga
     4741 ctatttctca ctgtttaatg acagacgtta tagcggttta gatcgtattt cgtcagcaaa
     4801 tttagtcacc gcaggtggca caacccgttt ctttaaagag gcaaccggtg aagaggtgtt
     4861 taatttcagc ttaggacaaa cttattatat aagcccgtct aaaattgatg atacctcaga
     4921 taacagcact aaaggtcata cgacttcatg ggcagcggaa tctaactgga aattccataa
     4981 gaattggaat tggcatggta gctatcaata tgatactcgt ttaaaccaaa cggcgttagc
     5041 gaatatgtca ttgcaataca aaccacagtc agacaaattg attcagctta attaccgcta
     5101 tgcaagtaaa gattacatca atcaaaactt gaacacgaat aagtatgggc aatccattaa
     5161 acaagtgggc ggtgtgctag gttgggaatt aaccgataaa gtgtcggtaa tgaccagtta
     5221 ttaccacgac cttgcattga aaaaaccggt ggaagggcaa atttcgctta actacaacac
     5281 ttgctgttgg gcggcaaatg tgtatgtggc tcgtcgctta gtttcaacgc cggtaggttc
     5341 atctgatacg atcaatgatt tctactatga caataaattc ggcattaact ttgagctacg
     5401 ctttggcaca aactacagca atggtgtaac ccgtatgcta aaacgaggta ttattcctta
     5461 caccgagccg tatagcatta attaacaaag taaaaacaaa taagtaaaaa tacaaatcgg
     5521 ggcgaaaaat atttgccccg atttttttat atttggctga taagcggtta aattctgttg
     5581 gaattttgca aatcttccgc taaattcaac cgcttgccat cgaaacttaa cctgtatttc
     5641 gcatacctgc ggcaatacct gtgatggtga tcatcaatgc ttgctctagt acaggatcag
     5701 cattttcacc ttgtttgcga atcctatcta acaattctac ctgaagtaga ttgagcggat
     5761 cggtataaat attgcgtagt gcaatcgatt ctgcgatcca aggtaaatcg gccattaatt
     5821 gtccatcgtg agccagtgca agtacggttt taagatcagc ctgtagttgc gtacgcaaca
     5881 tattgcctaa acggtgtagt tttggctcga ctaggcgttg gtcgtaatat tccgccagcc
     5941 aaatatcagc tttactaaat accatttcca gcattccgat acgggtcgag aaaaacggcc
     6001 attcgttaca catttctttt agtaaggttt cattaccttc atcaatcaac tgttgcaatg
     6061 cttgccctgc acctaaccaa gcaggtagca ttaagcggtt ttgcatccaa gcgaaaatcc
     6121 aaggaattgc acgcaaactc tccactccgc cttttggatt acgttttgca gggcgtgagc
     6181 caagcggcag acgggaaagt tcttgctctg gtgtagcaga gcggaaatac ggtacgaagt
     6241 ctagctcgcc acgcaccata tcacggtaaa tttggcaaga aatatcggag gcttttgcta
     6301 gcacatctcg ccattgctgc tttggctccg gtggtgggaa aatattcgct tctaaaatcg
     6361 cactggcata gagttctaaa ctttcaactg ccacggcagg taagcctaat ttaaagcgga
     6421 tcatttctcc ttgttcggtc actcgtaagc catttttgag tgagcgaggt ggctgagaaa
     6481 gtaaggctgc gtgagccggt gcgccaccac gcccgatagt accaccacga ccgtggaata
     6541 aggttaattc aatattatat ttttcacata aattaaccag agcttcttgc gcccgatatt
     6601 gcgcccagcc ggcagcaagc attccggcat ctttggcgga atcagagtag ccgatcataa
     6661 tcatttggta attgttgatg acgccacgat accagccgat attaaataaa tcggtcatca
     6721 ctttttcact atgatctaaa tcgcctagcg tttcaaataa tggggcaacc ggaatagtaa
     6781 atttgcaccc cgcctctttg agtaaaaggt gaaccgagag tacatcagag gcctctcttg
     6841 ccattgaaat gacataggct gaaatgacac cttcaggttg ctcggcaaca attttacaag
     6901 tgtctaacac ttctttagtt tcagggcttg gagtccagtt ggttggaatc aatgggcggc
     6961 gagaactgag ttcacgcact aagaatgcct gtttatcatc ttccgtccag tgagcataat
     7021 cgcctaagcc gatatagcgg gtaatttctg caatcgccat ttcgtggcgg gtactttctt
     7081 ggcgaatatc taagcgtgat aaacctaaac caaaacagtt tatacgacgt aagcaatcta
     7141 gtaatgcacc atttgcaata attcgcatac cacaggcttg taatgactca tagcaatcaa
     7201 aaagcggttc ccacaattgc tgatctgaag ttaaaatgtc actttcatca atagttgaaa
     7261 ttttaccttc caataattcc gcatagtaaa tttcggtatt aattaatttc tggcgtaata
     7321 cttttagtaa tacgcgatat ggctctaaat ggttgccata tttagcacga aatgcagggg
     7381 tacactgtgt aatcgataat tcttcagcaa gatttttaat atcttgtaag aacaattccg
     7441 tggctttcca acggttcatt cttaatacac ggcgagttgt ttctgccgtg acgaacgggt
     7501 taccgtcacg gtctccgccc atccaagaag aaaaacggac aggggctaaa tttaccggat
     7561 attgcacacc aaagtgtttt tctaaataga agttaagctg acggcaaaat tccggcacgg
     7621 ctttccataa actattttca atgactgcca taccgccttt ggcttcatca acaggggttg
     7681 ggcgttgggt tctgatttca ttagtatgcc aagcaagggc aatcagttgc attaaacggc
     7741 gcttgatttt atagctttct gcctcagtta aatcatcatg ttccaacaaa ttcaaacatt
     7801 tattgatttc aacgtgttta tgccccagcg aacggcgggt tacttccgtt gggtgagctg
     7861 ttagcactaa atcaatcatt aggctttcca cggttttaat cactttttca acggggatat
     7921 tttgtgattt tagacgaagg aacagagagt ctaatgagcg actaccaagt gattcatcaa
     7981 tatgatggcg agaaacagtt tgatgttgtt cagcaatatt tgttagattt agaaaatggc
     8041 taaatgcacg tgcaacgggt aagacatcat cgttagaaat attggctaat ttatctaata
     8101 gctgttcacg ggcgttttca tcgccggcac gagaattgcg agataacaca cgaatgcttt
     8161 cgatgagttc tagaatgtaa tttccttgcg catcacgaat cgtttctccc aaaaattcac
     8221 ctaacatatg gatattatgc tgaattgttg aatattgctg gttcataaa
//
LOCUS       DANMGB010000104         8220 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.104, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000104 DANMGB010000000
VERSION     DANMGB010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8220
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.104"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1368
                     /gene="nhaC"
                     /locus_tag="PXG19_001737"
     CDS             <1..1368
                     /gene="nhaC"
                     /locus_tag="PXG19_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6067021.1"
                     /translation="LKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIVMLLLF
                     GLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGLSVISP
                     ELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSGAFFGD
                     KTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQNLANIE
                     NLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSSPTLEQ
                     LGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILGILPAL
                     LNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLEVKNLS
                     RTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGFTGVTI
                     SKKAN"
     gene            complement(1411..2607)
                     /gene="ispC"
                     /locus_tag="PXG19_001738"
     CDS             complement(1411..2607)
                     /gene="ispC"
                     /locus_tag="PXG19_001738"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL6067022.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(2726..4924)
                     /gene="relA"
                     /locus_tag="PXG19_001739"
     CDS             complement(2726..4924)
                     /gene="relA"
                     /locus_tag="PXG19_001739"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL6067023.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            5178..6485
                     /locus_tag="PXG19_001740"
     CDS             5178..6485
                     /locus_tag="PXG19_001740"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL6067024.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            6670..8205
                     /gene="der"
                     /locus_tag="PXG19_001741"
     CDS             6670..8205
                     /gene="der"
                     /locus_tag="PXG19_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL6067025.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRKRLMKFIKK
                     SKK"
BASE COUNT         2330 a         1795 c         1674 g         2421 t
ORIGIN      
        1 cttaaattaa aaccaatgac agcggtcata ctttcgcttt tgacggtctt tatcttaggt
       61 tttacaatga ttgggcttgg ctgggtgcct caaatttcaa ttctagccgt gattgtaatg
      121 ctgctacttt tcggcttaat caataaaatt ccgtttaaaa atatgcaaga gggtatggca
      181 agcgggctga tgtccagtat tggtgcggtt tacctattct tttttattgg attattggtt
      241 tcagctttga tgatgtctgg tgcgattcca accttaatgt attatggctt aagtgtgatt
      301 tcacctgaat tattttacat ttctgcattc gcattaagtt ctgtagtagg tattgcgtta
      361 ggcagtagtt taaccacaac cgccaccatc ggtgttgctt ttatcggtat ggcttctgct
      421 ttcggtgcga accctgcgat tgtagcaggt gcggtggttt caggggcgtt ttttggcgat
      481 aaaacctctc cactttcaga cactactacc attgctgctt ccgtagtggg cattgatatg
      541 ttcgctcata tccgtaatat gctttatacc accatccctg cgtggatttt aacagcatta
      601 ttcctttggt ttttaaccga acctactgat gcacaaaatt tagcaaatat agagaaccta
      661 aaaaccaatt tgcaagaaac aggattaata cacggctact ctttgctacc ttttgttacg
      721 ttaattttaa tggcaattaa gcgtgttaat tcaatttata ttattgtaac tacagtaaca
      781 ctctcgctaa ttattaccta tatccacagt tcgccaaccc ttgaacagct agggaattat
      841 ttctttacca gctataaacc tgttgaaggc gtagatttag gcgaagtggc atcattagtc
      901 tctcgtggtg gcattaatag tatgttcttt accatcacta ttgtattgct tgcgttaagt
      961 ttaggtggtc ttttacaaat cctcggcatt ttaccggcac tacttaacgg cattagcggc
     1021 tttttaacca gcacaggacg tgttactctt gtagttgcca gcactgcggt gggaattaac
     1081 gtcttaatcg gtgagcaata tttgagctta ttgttatcag gtaatacttt ccgctcaact
     1141 tatgaacgtt taggcttaga agtgaaaaac ttatctcgca ccattgaaga tgcaggcacg
     1201 gtaatcaacc cattagtccc ttggggcgtg tgcggtgtgt ttatcagtag cgtattaaat
     1261 gtaccggtgt tagattatct accatacgca ttcttctgtt atatctgttt aatccttacc
     1321 ttaatttttg gatttaccgg ggtaacaatc agtaaaaaag ctaactaata tgtgaaaaat
     1381 gcctacaaat ttgtaggcat tttcttttca ttagagctga agaacagctt gtttggctaa
     1441 ctctctggcg agtttatcaa tatgcaatac atcagcaatt tcactgactt gaattggagc
     1501 aatattttcc accaccgttc tattcacgtt cacaatatcc gtaaagcgga tttgctcgtt
     1561 taaaaacgcc tcaacggcaa tttcattggc ggcattcatc gctgttgtcg catactgtcc
     1621 ttctgcaaaa gcctcaatcg ctaattttaa gttcgggtaa cgggcaaaat ccggctcgat
     1681 aaaggttagc tcttttaatt taaagaaatc taatggtggc acaccagcat taattcggtt
     1741 tggatatgcc atcgtgtgag caatcggcgt acacatatcc gggttgccca tttgagcaat
     1801 caccgagcca tcaatataac gcaccatcga atgaataatt gattgtgggt gaatgatgat
     1861 atccatttcc tcggctgttg cattaaacaa ccagcgggct tcaatatact ccaagccttt
     1921 gttcatcatt gtggctgaat cgactgaaat tttcttaccc atagaccaat tggggtgagc
     1981 aactgcttga gccggtgtaa tcgcatcaaa ttcatttaat ggcttagtac ggaacggtcc
     2041 acccgatcct gttaaaataa ttttactgac acccagttca gcgagtggac aaaacccgac
     2101 tttttgctgt gcctccggtg gaagcgattg gaaaatcgca ttgtgttcac tatctaccgg
     2161 taagagcttc gcaccggatt tacgagcctc atcaataaaa atttgcccac aggttaccag
     2221 cgattcttta tttgccaaca atacggtttt acccgctttc accgcagaaa gtgtcggtaa
     2281 taaccctgct gctcctacaa tagcagccat taccatatcc acttcggaat gtgcagcaag
     2341 ctcacaaata gctgcttgac cggctaacac ttcagtttta gaccccaaag ttgccaatgc
     2401 cgtttttaat gcttgtgcgg atttttcatc atccattgcc gcaaaagtcg gctgatattg
     2461 acgacattgc tccagcatta attcaacatt ctttccacca actaacgcaa acacctcata
     2521 ttggtttggg tttgggttat gctcaactac cgataaagtg cttttaccga tagaacctgt
     2581 tgaacctaaa atcactaatt ttttcatttt gtttctcttt atctaatgac tgataagggc
     2641 gaaagatttt tcgcccctac gccgtaatta tgcggatact cattcgttgt ttgtaaattg
     2701 tttagcaaaa acaaccgctt gtagattaac tcgaaagccg ttttgcttcg ataacatcat
     2761 ctaattgagc gatacgagcc aataatttat tcaaaatttc aacgttgtta agctgaattt
     2821 ccatatcaat ggtggcaagg ctacgtttca catcggttcg gctggaaacg cctaacacgt
     2881 ttactttttc atttgccata attgcactga catctcgcag taagccgttg cggtcattgg
     2941 caatcactcg aatggttaag cttaaaccag aggtatagcc ttcgccccaa tccgcctcca
     3001 caactcgttc tgggttgaga ctttgtaatt caaacagttg ctcacaatct gcacggtgaa
     3061 tcgaaatccc tctgccttgt gtgatgtaac ccacgatttc atcacccgga atcggctggc
     3121 agcaacgggc aatggaatgc attaagttcc ctacgccctc tacaatcaca tagcctttgc
     3181 ttggcttcgg ctgattggtg tttttattca cctgtttaag taccgcttcg tcttcttgtt
     3241 cggcggtcgg tttaattaat tttgattgca agaagtgcat taactgatga agacgaatat
     3301 cgccaccgcc aataccggca tagagatcat caaactgttt taagttatag cgaggcagag
     3361 catattcttc aatttgcttg agcgtaaaac cgaatttttc catttcggct tcaagggcct
     3421 ctttgccgat tggaatattt ttctctcggt ctaatttttt aaaccacgca ataatttttg
     3481 agcgagcttt gcctgtattc acaaaaccgg tattcggatt gagccaatct cggcttgggt
     3541 tcggctcttt ttgggtgata atttcaacct gatcgcccat ttgcagatga taagtaaacg
     3601 gcacaatccg ccctgccact tttgctccaa tgcaacgatg cccgatttca ctatgaattg
     3661 cataagcaaa atcaagtggt gtagcttttt gcggtaaatc gatcacctcg cctcttgggg
     3721 taaagacata aacacgatca tcaaaaattt gcgaacgcat ttctgccacc atatcgcctg
     3781 aatcggcaag atcgttttgc cactcaagca atttgcgtag ccacacgatt ttttcttcgt
     3841 agcccgaacg ccctgcggtt gccccctctt tatatttcca gtgagcggct acgcctagct
     3901 ccgcatcatc gtgcatttgc tgggtacgaa tttgcacttc aatcgttttt tcaccttcgc
     3961 ctaatacaac tgtatgaata gactgataac cgttaggttt tgggttagca atataatcat
     4021 cgaaatgttc cggcaaatgg gtatatttgg tgtgaataat gcctaatgcc gtgtagcaat
     4081 cttctaacgt tggcactatt acccgcacag cccgaatatc gaaaagctga ttaaatctca
     4141 accgtttttt ctgcattttc ttccaaatgc tgtagatatg tttcgggcgt ccataaatct
     4201 gcacattctt gatttcagga cttaaacaag cggtcagatc tgctacaaaa tttgcaatat
     4261 aacgctcacg atccacacgg cgttcgccca attcaaattt agcaatttga gtgtaagaga
     4321 cagggtgtaa aatgcggaaa cagtaatctt ccagctccca tttgagctgc ccgataccca
     4381 atcgattggc aagcggtgca taaacgtgag aacattcttt agcggcgaga acggtatctt
     4441 cttcggaatg gtggttacta tcacgcaggt aggcaattcg ttcggcaagt ttaatcacca
     4501 cacagcggaa atcgtccacc atcgccaaca acatgcgacg gatattgtcg atttgcagat
     4561 ccgacacatt attggcacta agctggcgga tattctccat ttcgagtacg cctttaacta
     4621 agtttttgat gtcgttactg aaatcttctt ttaattgcac caagtcgatc acattgtgtt
     4681 ttaccagagg aaaaagcatt gcggcaacta agctgtcatc gtccatattc aagccgtgca
     4741 atacttcaac catctcaatg ccataccaca tcagactata gtcggtatcc agtttttcct
     4801 gtgcataact ccacgcattg tgaatctgct caaaagtcac aggagacata ttcaggcttg
     4861 cacaccaact cgacaactca aaattattcg gttcaagttg atgggaataa cgaattgcta
     4921 ccataaggcc tccttgtaaa tttttgtgga aattagaccg cttgtacagc ttaaaatgga
     4981 gttttattat acgtggaaat tcagaaaaaa tttaccccta atcgaaaatt taatccaagt
     5041 tatcttatcc tctttactcc ttaagaggta gcaaccttgt gataaatcaa acctatcaac
     5101 acaatcattt gcacgacttc acgctcttga ttaaaatact tgcgttttta ttttgatctt
     5161 tatttttgtg ggtagcaatg acaattttag ctttaggaat caaccataaa accgcctctg
     5221 tgggtttaag agagaaagtg gcgtttgtag atgacaaacg taaactggct cttgaacaaa
     5281 tccaaacgag cggattggct gaaagcgtgg tcattctctc tacctgcaac cgcaccgagc
     5341 tctacttcca ccagcctaat atttctcccc gtgaagagag cgaggaaaat atccaatggc
     5401 gtgaacaatg tttccgctgg tttgcccaaa ttcatcaact tgatgaaagc gagttgcgtg
     5461 aatgtttata ttttaaacaa aatttagaag ccgctaacca cttaatgaaa gtggcaagcg
     5521 gattagattc actaatttta ggcgaaccac aaattttagg gcaggttaaa caagcctatc
     5581 aatatagcga agatttctac caacatcagc aaaaagcgat gtccaccaag ctatcacgct
     5641 tgttccaacg cacctttgcc accgcaaaac gagtacgttc cgaaaccgaa atcggcagcc
     5701 aagcggtgtc agttgcttat gcagcttgcg gtttagcccg tcaaattttc gataattttg
     5761 gcaagttacg ctttttgctg gtaggggcag gcgaaaccat tgaattagtc gcccgctatt
     5821 taattcaaca cggggcgaaa aatataatgt tggcaaaccg cacccatatt cgggcggaaa
     5881 tgttggcgga aaaactaaac gctccaatgc aaattctgtc gttaagtgct ttgcaactcg
     5941 gtttaaacca agctgatgta gttattagct ccaccggtag ccctgatacc ctaatcagta
     6001 aagaaatggt ggaaattgcg caaaaacaac gccaatttga cccacttttg ctgattgata
     6061 ttgccgttcc tcgtgatatt gacgaaaaag ccggcgactt agagggcgtt tacgcttata
     6121 gtgttgatga tttacaaaat attatccaac gcaatatggc tcagcgtgaa gaagccgcca
     6181 aacaagccgc tgaaatcgtc aaagaggaaa gcaaagcatt ttttgaatgg ttaaaacaac
     6241 agcagtctag tgatttaatc aaacgctatc gtcaagatgc ggagcaaacc cgccaagaat
     6301 tgttggagaa agccctacaa gcaatcagtc aagggcaaga cagccaaaaa gtattaagtg
     6361 agctaagcta caaactcacc aaccagttac tacacgcccc aacccaagcg ttacaagcaa
     6421 tggcaaaaag tggcaactcc accggcttac aaagtttttc aagagcatta cggctagaag
     6481 aatgatgctc agcacattct tttaggcata tttgcaaaaa attgaacatt tttaaccgct
     6541 tgcggacgca cgccgtgcgt ccctccccgt gttcccgatc ttcttctaat ttcaacttcc
     6601 ccaaatttcc gctataataa gccaattttt gcaactattt tgcaaataac cggatataga
     6661 ggatacaaaa tgactcctgt tgttgcccta gtgggcagac ctaatgtcgg caaatcgact
     6721 ttatttaacc gtttaacccg tactcgagat gccttagtag cagatttccc cggcttaacc
     6781 cgagaccgta aatatggtca cgctaatatt gccggctacg atttcattgt aatcgacacc
     6841 ggtggtattg atggtacaga ggaaggcgtg gaagaaaaaa tggcggaaca atctttattg
     6901 gcgattgaag aagccgatgt ggtgcttttc ttggttgatg cccgagccgg attattacct
     6961 gccgatgtcg gcattgctca atatttacgc caacgtgaaa aaaccacggt ggtggttgcc
     7021 aataaaaccg atggtattga tgccgactct cactgtgccg aattctatca attaggctta
     7081 ggcgaagtag aacaaattgc tgcagcacaa gggcgtgggg ttacgcagct tatcgagcaa
     7141 gtgttagctc ctttaggcga acagctaaat gccgagcaat ttaaccaaga acaagcgggc
     7201 gaaaatgcta aaaatgttgc aaatgaagaa acagacgaat gggataccga attcgacttt
     7261 gagaacgaag aagatgcggc attattagat gaagccttgg cagaagaagc agaagagtcg
     7321 attgaagata aaaatatcaa aattgcgatt gtcggtcgtc cgaatgttgg taaatcaaca
     7381 ctgaccaacc gcattttagg cgaagagcgt gtggtagttt atgatatgcc aggaacaacc
     7441 cgtgattcta tttatattcc aatggagcgt gacggtcagc aatataccat cattgatacc
     7501 gccggtgtgc gtaaacgtgg caaagtgaat ttagcggttg agaaattctc ggtaattaaa
     7561 accttgcaag ccattcaaga tgcaaacgtg gtgctattaa ctattgaggc ccgagaaggt
     7621 atttccgatc aggatttatc actactcggc tttattctaa atgctggtcg ttcattggtg
     7681 attgtggtaa acaaatggga cggcttgtcg caagatatta aagatcaagt gaaatcagag
     7741 ttagatcgcc gtttagattt tattgatttt gccagagtgc attttatctc ggcattgcac
     7801 ggctcaggcg tggggaattt gtttgattca gtaaaagaag cctacgcttg tgcaacgcaa
     7861 aaaacctcga cctcaatgct gactcgcatt ttgcgtatgg ctgctgatga acaccaacca
     7921 ccattggtta atggtcgccg agtgaaatta aaatatgctc acccgggtgg ctacaaccca
     7981 ccaattattg tgattcacgg caatcaggtt gaaaaattag cggattctta caaacgttat
     8041 ttaagtaatt atttccgtaa aagtttaaaa attatcggct cgccaattcg gattttattc
     8101 caagaaggca ataatccttt tgccggtaag aaaaacaaac tgacaccaag ccaattacgc
     8161 aaacgtaaac gtttgatgaa gtttattaag aaaagtaaga aataatatct aacgatagcg
//
LOCUS       DANMGB010000105         8148 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.105, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000105 DANMGB010000000
VERSION     DANMGB010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8148
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.105"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..910
                     /locus_tag="PXG19_001742"
     CDS             <1..910
                     /locus_tag="PXG19_001742"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL6067026.1"
                     /translation="IIEVQGPILSEVGNGMQDNLSGIEKAVKVNVKCIPSATYEVVHS
                     LAKWKRHTLARFGFKEGEGLFVHMKALRPDEDSLDRTHSVYVDQWDWEKVIPEGRRNF
                     DFLKETVNEIYKAIRLTELAVEARFDIPSVLPKQITFVHSEDLVQRYPNMTSKERENA
                     ICKECGAVFLIGIGGKLSDGKPHDGRAPDYDDWTTESEQGYKGLNGDILVWNEELGTA
                     FELSSMGIRVDETALRLQVALTGDEDRLEMDWHKDLLAGRLPLSIGGGIGQSRLVMFL
                     LRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1034..1453)
                     /gene="atpC"
                     /locus_tag="PXG19_001743"
     CDS             complement(1034..1453)
                     /gene="atpC"
                     /locus_tag="PXG19_001743"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL6067027.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1481..2854)
                     /gene="atpD"
                     /locus_tag="PXG19_001744"
     CDS             complement(1481..2854)
                     /gene="atpD"
                     /locus_tag="PXG19_001744"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL6067028.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(2875..3741)
                     /gene="atpG"
                     /locus_tag="PXG19_001745"
     CDS             complement(2875..3741)
                     /gene="atpG"
                     /locus_tag="PXG19_001745"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL6067029.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3767..5308)
                     /gene="atpA"
                     /locus_tag="PXG19_001746"
     CDS             complement(3767..5308)
                     /gene="atpA"
                     /locus_tag="PXG19_001746"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL6067030.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5321..5854)
                     /gene="atpH"
                     /locus_tag="PXG19_001747"
     CDS             complement(5321..5854)
                     /gene="atpH"
                     /locus_tag="PXG19_001747"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL6067031.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5868..6338)
                     /gene="atpF"
                     /locus_tag="PXG19_001748"
     CDS             complement(5868..6338)
                     /gene="atpF"
                     /locus_tag="PXG19_001748"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL6067032.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6399..6653)
                     /gene="atpE"
                     /locus_tag="PXG19_001749"
     CDS             complement(6399..6653)
                     /gene="atpE"
                     /locus_tag="PXG19_001749"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL6067033.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6771..7559)
                     /gene="atpB"
                     /locus_tag="PXG19_001750"
     CDS             complement(6771..7559)
                     /gene="atpB"
                     /locus_tag="PXG19_001750"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL6067034.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7582..7965)
                     /locus_tag="PXG19_001751"
     CDS             complement(7582..7965)
                     /locus_tag="PXG19_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL6067035.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2407 a         1839 c         1529 g         2373 t
ORIGIN      
        1 cattattgaa gttcaggggc ctattttgag cgaagtcggc aacggtatgc aagacaacct
       61 ttccggtatc gaaaaagcag taaaagtaaa cgtaaaatgt attccaagcg ctacttatga
      121 agtggttcat tctcttgcaa aatggaaacg ccacacctta gctcgttttg gatttaaaga
      181 aggagaaggg ttatttgttc atatgaaagc tcttcgccct gatgaagatt ctttagatcg
      241 cacacactcg gtatatgttg accaatggga ctgggaaaaa gtcattcctg aaggtcgccg
      301 caacttcgat ttcttaaaag aaacggtaaa cgaaatctat aaagcaattc gtttaaccga
      361 attagcggtg gaggctcgtt tcgatattcc atctgtattg cctaaacaaa ttactttcgt
      421 tcacagcgaa gacttagtgc aacgctatcc gaatatgacc agcaaagagc gtgaaaatgc
      481 tatctgtaaa gagtgcggag cggtgttctt aatcggtatc ggcggcaaat tatcagacgg
      541 taaacctcac gatggacgag ctccggacta tgatgactgg acaaccgagt ccgaacaagg
      601 ctacaaaggc ttaaacggcg atattttagt ttggaacgaa gaactcggca cagcctttga
      661 actttcctca atgggtattc gtgtagatga aaccgcctta cgcttacaag ttgctttaac
      721 tggcgacgaa gaccgcctcg aaatggattg gcacaaagat ttattagccg gcagactccc
      781 gctttctatc ggcggcggta tcggtcaatc tcgcttagtg atgttcttac tacgcaaaaa
      841 acacatcggt gaggtgcaat ccagtgtctg gccaaaagcg gtatttgaag agtttgagaa
      901 tattctttaa taaaacaaaa aagcgaacct tagggttcgc ttttgctttc tacaagcggt
      961 cttattttgc aaaaaattta ctgtttttaa ccgcttgtaa aacaaaaccc cactttcgtg
     1021 gggttttttg atattaacgt ttattcgcta atttggtttt agtgagttcg taaacacgca
     1081 gtttcgcaat ttctctcgct aacttcgcgg tcatatccgc atcgctggtt tttgaaagtg
     1141 tttcttctac tttgcgtttt gcggcaagaa tacgctgttc gtctagttct tcaccacgaa
     1201 ttgcggtatc agccaacact gttactacgg tcggttgtac ttcaaggaaa ccacctgaaa
     1261 cgtagataaa ctcttctttg ccgtcagcta aagtgaattt aaccattccc ggtttaattg
     1321 cggttaataa cggtgcatgc cctgcataca cccctaattc accatctgtc cctgaaacac
     1381 gcacgctggt aactgtgcct tcaaagattt tacgttctgc actcactacc gtgagttcaa
     1441 attgagatgc catgttgttc tcctttagtt tagaacaaaa ttacatctgt tttgctcttt
     1501 caaccacttc gtcaattgaa cccgccatat agaacgcttg ttccggaata tggtcgtatt
     1561 cgccttctaa aatgccttta aagccacgaa ttgtttcttt taacggtacg aatttgcccg
     1621 gtacgccgtt gaatacttcc gcaacgtgga atggttgtga aaggaaacgt tcgattttac
     1681 gcgcacgagc aacaaggcgt ttgtcgtctt ccgataattc atccataccc aaaattgcaa
     1741 tgatgtcttt taactcttta taacgttgta atgtaccttg tacaccacga gcaacgttat
     1801 agtgttcctc accaaccacg agtggatcta actgacgaga ggttgagtca agagggtcaa
     1861 ccgccgggta aataccgagt gaagcgatat tacggcttaa taccaccgtt gagtctaagt
     1921 gggcaaaggt agttgccgga gacgggtcag ttaagtcatc cgccggaaca tataccgctt
     1981 gcacagaggt aatagagccg gttttggttg aggtaatacg ctcctgtaat acgcccatct
     2041 cttctgcaag agtcggctga taacctaccg cagacggcat acgacctaat aacgcagata
     2101 cttcggtacc agctaaagta taacggtaga tgttatccac gaagaataat acgtcacgac
     2161 cttcatcacg gaatttttct gccatggtta agccggttaa tgccacacgc agacggttgc
     2221 ccggtggttc gttcatttga ccgtaaacca gcgatacttt gtctaatacg ttagagtctt
     2281 tcatttcgtg gtagaagtca ttaccctcac gagtacgctc acctacaccg gcgaataccg
     2341 agtaaccgct atgttcgata gcgatgttac ggattaactc catcatattt acggttttac
     2401 ctacacccgc accaccgaat aagccaactt taccaccctt agcaaatgga gcaactaagt
     2461 cgataacttt gataccggtc tctaaaagct cggtgctgtt cgcttgttct tcgtagcttg
     2521 gtgctgcacg gtggattgtc caacgttctt cttcaccgat tgggcctgct tcatcaattg
     2581 gctcacctaa tacgttcata atacgaccga gtgtttttgt accaaccggt acttcaatcg
     2641 ctttattcgt attttcaact tttaagccac gttttaaacc atcagatgaa ccaagtgcga
     2701 tacaacggac cacaccgcca cctaattgtt gttgaacttc aagggttaat cctgattcaa
     2761 cttttaatgc atcataaact tttggtactg catcttgcgg aaactcaaca tcgattaccg
     2821 caccgatgat ctgtacaatt tttcccgttg ccattaccgt tcctctattc attgttaaat
     2881 tgctgcggca cccgcgacaa tttcatttaa ttcattcgta atacttgctt gacgagcttt
     2941 gttatacact aactgtaact cattaatcag attacctgcg ttatcggttg ctgctttcat
     3001 tgccaccatt cgagcagcct gttcagacgc aagattatct accactgcct gataaacttg
     3061 agattctaaa taacgaacca gtaagctgtc taataacgct tgtggatttg gttcatagag
     3121 ataatcccaa gaaccagttt gctctaatga gtcattttcc agtgcaggca aaggaagcaa
     3181 ctgttgtact gtcggttttt gtgacatcgt gtttataaaa cggttatata ccacatacac
     3241 ttcatcaatt tcgccttcac ggtaggcatt taccatacca ttaacaatac cgactaaatc
     3301 ttccattgcc ggtgtatcac ccaatccatt gatatgacct ttaatctcta gccccattgg
     3361 gttaaaaaag gagatccctt tatttcccac cacagcaagt cgagacttaa caccttggtc
     3421 atctttttct ttcaattcat gtaaaacggt tttaaataaa ttgatattta agccaccaca
     3481 taaaccgcga tcggttgaaa ctactaaata gccaactttt tttaccggac gtggggtcaa
     3541 aaatgggtgt ttatactcaa tgttaccttt ggcaatatgg ctaattgcct tgcgaatact
     3601 ttcagcataa gggcgagaag ccgccatacg ctcttgggtt ttacgcattt ttgatgcggc
     3661 aaccatttcc atcgctttgg taattttttg tgtattacga acacttgcaa ttttggttct
     3721 tatctcttta gcacctgcca tattatttct ccgctaaaaa gttagattac caagcactgt
     3781 tctttttgaa accagataaa atctcgttca atttatcttt aatttcatcg ttgaaattgc
     3841 cggattttga cagttcttgc ataaactcgc cgtagttact ttgagcataa gctaataagt
     3901 ttgcttcaaa tgagccaaca cgctcaaccg gaatatcatc taagtaaccg tattcagctg
     3961 ctgctaatga taaacctaat tgtgcaacag acatcggctc gaattgtttt tgtttcaaca
     4021 attcagttac tttttgaccg tgtgaaagct gtttacgtgt tgcttcatca agatctgatg
     4081 cgaactgggc aaatgccgct aattcacggt attgagcaag tgcggtacgg ataccaccgg
     4141 caagcttctt aaccagttta gtttgtgcag aaccacctac acgggaaacc gagatacccg
     4201 ggtttaccgc agggcgaata ccggcattga ataagcctga ttctaagaaa atctgaccat
     4261 cggtaattga aattacgtta gtcggtacga aggctgaaac gtcacctgct tgggtttcga
     4321 tgatcggtaa tgcggttaaa gaaccggttt gacctttcac agcaccgtta gtgaaacgtt
     4381 ctacatagtc tgcatttaca cgagacgcac gctctaataa gcgagagtgt agatagaaca
     4441 catcacccgg gaatgcttca cgacccggtg gacggcgtaa taacaatgaa atttgacggt
     4501 aagcaactgc ttgcttagac aaatcatcgt aaacgatcaa cgcatcttca ccacggtcac
     4561 ggaagtattc acccattgca caacctgcat aaggtgcaag atattgtaat gcagcagatt
     4621 cagacgcaga agccactaca acgatagtgt tcgctaatgc accgtgttct tctaatttac
     4681 gcaccacgtt ggcgatagtt gatgcctttt gaccgattgc aacgtagata catttaatgc
     4741 ctgaatcacg ttggttgatg atcgcatcaa tcgctaatgc ggttttaccg gtttgacggt
     4801 cacctataat caattcacgc tgaccacgac cgattggtac cattgagtcc accgctttgt
     4861 aaccggtttg aaccggttga tcaaccgatt gacggtcgat aacgcccggt gcgatcactt
     4921 cgattggtga gaaaccgtca ttttggattt cgcctttacc atcgattggc tgacctaagg
     4981 tatttacaac acgacctaat aagccacgac caaccggcac ttctaaaata cgaccggtac
     5041 attgtacttg cataccttct gctaaatcgg cataaggtcc cattacaact gcaccaacag
     5101 aatctctttc taagtttaat gcaatcgcat aacgattgcc cggtaatgca atcatttcac
     5161 cttgcattac atcagataag ccgtggatac gaataacccc gtcacttacc gaaacgattg
     5221 tccctgtgct ttgagcttca ctcaccacat taaactgggc aatacgtttt ttaatcaatt
     5281 cactaatttc agttgaattt agttgcattt tttattcctc ttacaagctc aactcttgac
     5341 tcaagcggtt tagctgtcca cgactactac catcaatcac tacatcatca taacgaatga
     5401 tcacacccgc aattaatgaa ctatctattg atgaagtaat acgtactttc gttccgagtc
     5461 gcttttccat cgcattggca atttttgctt cttgtgcatc tgttaattta tctgcagaaa
     5521 caacctcaac atctttaatt gattcctgtt ctgctcttaa ttctaaaaat gcattcaata
     5581 ccgcaggtaa tactgctaaa cgcttgttat cagccattac gcgaatgaaa ttttgcccat
     5641 attgatctaa ttgttcgcca caaatcttga taaacgtctc agaaatctga ccgcttgcaa
     5701 gtgatgagtt aagaaaacta gctacttgct catcgttagc gacggcggca gaaaaagtta
     5761 acatctgctg ccattgttcc aattgacctt gttctaaagc aaaatcgaaa gccgctttag
     5821 cataggggcg agctactgtg cttaattctg acatctgccc ctcctagtta tagttccgca
     5881 actagcttat caataatatc gttgttcgca gcggcatcca ccgaacgacc cacgattttt
     5941 tctgcaccag caatagccaa tgcagccact ttttgacgaa gctcttcttg aacgcgttta
     6001 cgttcgcttt caacttccgc gtaaccctgt tcaataatac gttgacgttc cacttcagct
     6061 tctgcttgta cagattctaa aatttcatta cgacgttttg ttgctaaatc aatgatattt
     6121 tgtgcttctt ctttcgctct aaggatttct tgatccgcag ccgctttaga atcagcttgt
     6181 tcttgtttcg ctttttcggc agaagccaat gcgctagcaa tatttgcctg acgctcttct
     6241 atcactcgaa ttagcggtgg ccatacaaac ttcatacaga acgcaacaaa aagtgcgaac
     6301 gcaatcagtt gaccaattag tgttgcattt aaattcacaa cgccctccta aaagccggta
     6361 aagttattca actgaataac ggttaatcaa atcccgactt atttcaataa atcaatgaac
     6421 gggtttgcga agatgaatag taatgaaata cctacagcga tcattgcgat agcatctaaa
     6481 agaccagcaa cgataaacat tttagtttgt aagcttgatg ctaattccgg ctgacgtgca
     6541 gatgactcta agaatttgcc acctaagata gcaaagccga tagcagtacc aagagcagcg
     6601 aaagctaata aaattgaagc accaataatt gttgctgtga ttactgattc cataatgttc
     6661 tccattagat tgaggaatta gcccgaaggc tgggttgttg ataaaaatac atatcaagcg
     6721 gtcaatattt tgcaaaaatt tgcgaaaaac ctaccgcttg taaggctagt ttaatgatcc
     6781 gctttgttat aagcgatact caaataaaca atcgttagca tcataaaaat aaaggcttga
     6841 agcgtaataa ctaaaatatg gaaaatcgcc caaaccaagt gtaatggaat ccccaacgcc
     6901 tgtagagcga agttgtctgc catatacatt actgcaataa ggataaagat taactcacct
     6961 gcatacatat taccgaataa acggaacgcc aatgaaatcg gttttgccaa aagcgttacc
     7021 gtttcaagaa taaagtttac cggaatgaat gcccagtggt taaacgggtg taacgtgtat
     7081 tctttcacta aaccgccaaa acctttcgat ttcaccgtgt aaaataaaat taacgcaaat
     7141 acacaaatag acatacccag tgttgcacta atatctgccg ttggtactgc acgcaaatag
     7201 tgaataccaa acagattggc taactgtggt aagaaatcga ccgggataag gtcgatcgca
     7261 ttcataataa acacccaaca gaaaatcgtt aatgctaatg gtgcaattac attgcgaggt
     7321 ccgtggaagt tatccttcac taaaccgttt acccactcaa taacaatctc aacaaaacat
     7381 tgcaattttc ccggaacgcc cgttgttgca ttttttgcta cacgcgagaa cacccataaa
     7441 aaaatcgcac ctgccactaa agagaagaac agtgtatcta aatgcactgc ccaaaagcct
     7501 tcacctgtcg ataaaaaact caagtgatgg ctaatatatt ctgctgtcgt tccagccata
     7561 acatatcctt ttaaattaaa attagtggtg atgtttgctt aatacaaacg ggatcatatt
     7621 atttaaaaat aatgcgataa aataacccac gaaaaacaac acaacatcta gagcagggat
     7681 aagtttaaaa cagccgatca ccaaaataat agtaaccaac catttcattc cttcaccacg
     7741 atagaaagcg gtcatttttg actgattttt tgcagatttc ttaaagaaaa cccaatatac
     7801 aaacacaaga tgaggcaaaa aactcgctaa agcaccgcct agaaaggaaa aattaaaatt
     7861 cattttccat aaagacactc caagtgcaaa aacgcacaag agaaaaaatt caacctttaa
     7921 tgcttgttta tattgtgatt ttgctctatt gattacagct gacacatttt atcctttttg
     7981 aataagtaaa ccacacaatc aggctaataa ttagccactg ttgaatcaaa gaaaatccgt
     8041 gctaaattat actttacaaa tgaattgttg caaccgaaaa gcgacacaaa aacttgttat
     8101 tcttcacatt tttgaaaaaa aattttattt acgttgcatt tttttgag
//
LOCUS       DANMGB010000106         8134 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.106, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000106 DANMGB010000000
VERSION     DANMGB010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8134
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.106"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2..274
                     /locus_tag="PXG19_001752"
     CDS             2..274
                     /locus_tag="PXG19_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6067036.1"
                     /translation="MPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKVVLEACIEP
                     ELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            258..500
                     /locus_tag="PXG19_001753"
     CDS             258..500
                     /locus_tag="PXG19_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL6067037.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            512..1180
                     /gene="rluA"
                     /locus_tag="PXG19_001754"
     CDS             512..1180
                     /gene="rluA"
                     /locus_tag="PXG19_001754"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL6067038.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(1158..1733)
                     /gene="ampD"
                     /locus_tag="PXG19_001755"
     CDS             complement(1158..1733)
                     /gene="ampD"
                     /locus_tag="PXG19_001755"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL6067039.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDIAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            1793..2635
                     /locus_tag="PXG19_001756"
     CDS             1793..2635
                     /locus_tag="PXG19_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL6067040.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            2758..3399
                     /gene="pyrE"
                     /locus_tag="PXG19_001757"
     CDS             2758..3399
                     /gene="pyrE"
                     /locus_tag="PXG19_001757"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL6067041.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            3573..4662
                     /locus_tag="PXG19_001758"
                     /pseudo
     CDS             3573..4662
                     /locus_tag="PXG19_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(4727..5917)
                     /gene="metC"
                     /locus_tag="PXG19_001759"
     CDS             complement(4727..5917)
                     /gene="metC"
                     /locus_tag="PXG19_001759"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL6067042.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(5976..6515)
                     /gene="dsbB"
                     /locus_tag="PXG19_001760"
     CDS             complement(5976..6515)
                     /gene="dsbB"
                     /locus_tag="PXG19_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL6067043.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(6578..8119)
                     /gene="nhaB"
                     /locus_tag="PXG19_001761"
     CDS             complement(6578..8119)
                     /gene="nhaB"
                     /locus_tag="PXG19_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL6067044.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WVVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
BASE COUNT         2541 a         1614 c         1753 g         2226 t
ORIGIN      
        1 tgtgccgtta ttgtttgaat acgacccgaa caaaagccaa attaatttag ccaaatatgg
       61 tattgatttt gaacaggcaa agttgctttg ggaagatgaa cgaaaagttg tactggaggc
      121 ttgcattgaa cccgaattac gctatttcct gattggcaag atttatgata aatattggac
      181 agcgtttttt acaccaagaa atgatgttat tcgtttaatt tcagttagac gttcccgtaa
      241 aaaagagatc tcatactatg agaaatacca ttagtgccga agaattagaa cgtatcttcg
      301 atgaaggcaa agaagatatt ttacaatact gcgatctttc taccgctcat cgcccggggc
      361 aaatgaaaag ggtgaatgtt gatttcccaa attggatggt agaagcgtta gataagcaag
      421 ccagacattt aggtgtgcct cgccaagcct tgattaaaat gtggattgcg gaaaaattac
      481 cggttcaatc acctaggtaa gcgagtggca aatggcatta attgaatata accctccatt
      541 agaaccattt ttagatgagg tttatcggga taaccatatt ttagtaatta ataagcctag
      601 tggtttatta tcggtgccgg gcaatcgtcc cgaatattac gacagtgcaa tgactcgagt
      661 acagcaaaaa tatggcttta ccgaaccggc tcatcgtttg gatatggcaa caagcggtat
      721 tcttttgttc gccctaagca aagcggcgga aaaagaacta aaacgccaat ttcgggaacg
      781 tgaaccgaaa aaacactata ttgcgttact ttggggcaaa ttaggtgaaa aagttgggga
      841 taagggcgaa atgaattttc cgctgatttg cgattgggaa aatcgccccc gccagaaaat
      901 ttgctatgaa cgaggcaaaa aagccattac ccattatgaa gtgttagctc attatccgaa
      961 taatatagcg agagtaaaac tcacgcctat cacggggcgt tcgcatcagc tacgagtaca
     1021 tagccttgcg ttaggtcacc cgattattgg cgataagttt tatgctaatc cgctggcaaa
     1081 aagtttatcg ccccgtttat gtttgcacgc ggagtcacta acaattactc acccgattac
     1141 aagggagttg atgacgttta ctgctgagcc gactttttag cctcgttcag taggtgtttg
     1201 taatatgccc aatcaaaata ttgccccggg tcgattttcc gttccggggc aatatggcaa
     1261 tgcccggtga tgcgttcatc ggtaatttgt ggatagcttt gctgaatggc tttggtcaaa
     1321 tttgccaaag attggtattg agcttgagta aacggctgat tattactgcc ttccagttca
     1381 atgccaatcg aatattcatt gcatttctcc cgcccttcaa aacaagagac gccggcgtgc
     1441 cacgctatat cgttaaaatt cacatattgc gtgatttccc cctccctatt aatcaaacaa
     1501 tgggcggaaa cccgtagatc tttgatttct tcaaaataag ggtgagcggt tggttcgagt
     1561 ttaccttgga aaaacagatc gataaaattt ccaccaaatt cttccggcgg taagctgatg
     1621 tagtgaataa ccaacaagga aatatcctct tgatcaggac gttggctaaa atgcggagac
     1681 ggcacttgtt tttgaccggt taaacagccc tgttcgattt ttaaatttgg catagtctaa
     1741 atagggtgaa tacgttaaaa tatggctcat tttactagaa aaagagaaga atatgttaag
     1801 ttatcgccac agtttccacg caggcaacca cgctgatgtg ctaaaacaca ttgtccagct
     1861 tttgatcttg cgagcattaa aagaaaaaga aaaaggtttt ttatatcttg atactcactc
     1921 cggtgtgggg cgttatagtc tgttaagttt tgaatcggaa aaaacaggcg aatatttaga
     1981 gggcgttgcc cgtttatggg agcgtgatga tttaccggaa gaagtggcat tctatattga
     2041 tgagctgaaa aaattaaacc gtggcggcaa gttaaagtat tacgcaggct ccccattatt
     2101 ggcggtacag caactgcgtg agcaagaccg agccattctt accgaacttc accccaatga
     2161 ttttccgctg ttacgacaag aatttgccaa agcgaaaaat gtgcaaacca agcgagaaaa
     2221 tggctttcaa caattaaaat ccgccctgcc gcctaaagag cgtcgaggtt ttgtgttgat
     2281 tgatccacct tatgaattaa aagaagatta tgaattggtg gttaaagcga tagaagaggg
     2341 ctacaaacgg tttgccactg gtgtgtatgc catttggtat ccggtggtgc ttcgccaaca
     2401 taccaaacgt atagtgcgag gtttaatgga taccggcatt cgcaaaattc tacaaattga
     2461 gcttgccgtt cgtcctgata gcgaccaacg tggaatgacg gcaagtggta tgattgtgat
     2521 caacccaccg tggcagcttg aaacccagat gaaaaaaatc ctgccatatt taaccgaggt
     2581 gcttgtgccg gaaggaacag gttcttggaa ggtggagtgg attacgcctg agtaaattaa
     2641 atacggatag cacaagcgtg gacgcttgcg ccatcataaa ttctgatttg caatattttt
     2701 tagaaaaata accgcttgtc ttatcaagaa gtgggggaaa tataaaagga aaaaacgatg
     2761 caacaataca aacacgactt tattgaattt gccttaagcc gcaatgtgct gaaatttggc
     2821 gaatttacct taaaatcagg cagaatcagc ccctattttt tcaatgctgg gctttttaac
     2881 accgggcgcg atttagccaa attaggcgaa tattacgcca aagccattca agccagcggc
     2941 attgagtatg atgtgttatt cgggccggct tataaaggca ttccgattgc aaccacggtt
     3001 gccgtggcac tagccaacct gttcgatgtg gataaacctt gttgctttaa ccgcaaagag
     3061 gcaaaagatc acggtgaagg cggtaattta atcggttctc ccttaacggg caagattttg
     3121 ctggtggacg atgtgattac cgcaggcacg gcaattcgtg agtcgatgga aattatcaat
     3181 gccaataatg cccagcttgc cggtgtgctg attgcgttaa accgtaaaga gaaaggcaag
     3241 ggcgagttgt ctgcgattca agaagtcgaa cgtgattacg gttgccaagt tttctcgatt
     3301 gtggattttg atgatttggt agcatttatt gaaacgtcgc cacaatacgc tccttatttg
     3361 ccgaaaatgc gtgaatatcg tgaaaaatac ggtgtttaac ttttgcaaaa aaacagcaaa
     3421 aactcaccgc ttgtcactct ctaatctcac cattatgaat cactttcatc ttttggtgag
     3481 attttttcaa ttaaaaagcc gataaattga ttgtgagctt tagctaattg gcttaggata
     3541 aactcctgta atacaggagt tggagaacta aaatggcaca tcaaaaatta ccttttcacg
     3601 cagacaccgt tggctcatat ttgcgttccg atgcttggaa aaaagctcac gcagactata
     3661 aagcaggcaa catttccctc gaacaacgtg atgaaattgt agaagcggaa gtgaaaaaat
     3721 tagtacaagc atcaattaga tgcgggcatt caagttgtta cagacggcga atatcaccgc
     3781 tcttggtggc atattgattt cttggaaaat ctgaacggca ttgaaggcta tgtgccggaa
     3841 aaagcctatg cgtttaaagg ggttgaggtt cgcccttata atacacgttg ttgcggtaaa
     3901 gtgtcttgga atccgaatca cccttttatt gagcatttca aaaaattcaa tgcgattgta
     3961 ggtggtcgtg cggtggcgaa atttaccatt ccaagtccaa accaattaat gtacccgatt
     4021 cagtgggatc acggcattta cccaaaccgt gaggaatttg ccaaagatgt gcaacaggct
     4081 tataaagagg cgattaaagc gttctatgat gccggctgtc gttatttgca aattgatgat
     4141 gtctattggg ggtcgttgtg taataacgtt ggtcaaccga catttgaagc cgataaagct
     4201 caagcggtgg cgaatattca agccattctt gccgataagc cggaagattt aaccattacc
     4261 acccacgttt gccgaggcaa ctataaatct tcttatttat tgacaggggc ttatgatccg
     4321 attgccgacg gcttatttgc tcaaaccaac tatgatgggt atttcttaga atatgatgac
     4381 gagcgttcag gcggttttga gccgttaaaa cattttgcca acaacaaagg gcgtgtggta
     4441 ttgggcttaa ttagttcaaa attccctgaa ttggaagata aggaagcggt taaagcccgt
     4501 attcaagaag cggcaaaata tgtgccgtta gagcagcttt gcctaagccc gcaatgtggt
     4561 tttgcctcaa ccgaagaggg caatattatg tcggaagcac agcaatgggc gaaagttcgt
     4621 cttgtggagg aaatcgccca agaagtttgg ggcgaagatt aattagagtg aaaaatgccc
     4681 gtaacaagcg ggcatttttt gtgaattttt tgcaaattca agccatttag cgaatgcggt
     4741 taaaaccttg ttctaaatcg gcaatcaaat cttccaccgc ttccaagcca acgtgaatgc
     4801 gaattaatgt tcccgtcagt ttgcgttcaa tcgccgggcg gattttggca atttcttccg
     4861 gctgattggc aagaatcagc gattcaaacc caccccaaga atacgccatt gaaaacagtt
     4921 caaaatgctc taggaagttg gctaatttgt cattcgagag cttttcgcaa agttcaaatg
     4981 aaaatagacc gcttgaacct aaaaaatccc gcttaaaaaa ttcgtgcccc gggcagcttt
     5041 ccaacgccgg gtgataaact gctttcactt cagggcgttg agccagccag ttagctaccg
     5101 caatgctact ttgttcgtgc tgttttaagc gaatgcctaa ggtgcgtagc ccccgagcgg
     5161 tgatgtaagc ggaatcagca tccaccattt gccccattaa ataagagcct tcacgcagtt
     5221 tatcccaaca acgggcgtta gaaaccgcag taccgatcat cacatcagaa tgcccgacta
     5281 aatatttagt gccggcttga atggaaatat caatgccata ttctaaagca gggaacagca
     5341 caccggcaga ccaagtgttg tcgatcataa tcacgatttc tgggttgatt tcacgagcaa
     5401 cacgcacgag agtcggaata tcaggcactt ccattgttag cgagctcggc gattctaaaa
     5461 aaagcacttt ggtgttcggt tgcacaaggg ctttcaagcc ttcaccaatc atcgggtcat
     5521 aataagtagt tgaaacaccc atacgtttta acagcgcatt acagaattct tgtgtcggtt
     5581 cgtaagctgc gcctgtcatt aaaacgtggt tgccttgttc cacaaaagct aaaatcgcat
     5641 tggtgactgc cgccgcaccg caagggtaaa ggtagcaacc tgctccacct tctaattcac
     5701 acatcgcttc ttgtaatgaa aaatgagtga gagtgccacg tctgccataa aataatgctc
     5761 ctttgtagcg gttttgtgta gcgtgttttt tctcttctaa ggtttcaaac actaaagatg
     5821 aagcacgctg aatcaccggg ttaactgctc cttgtgtgtt acgtttttta cgccctgtat
     5881 gaacaagttt ggtggaaaga tttttatagt tagacataac ttttcctaaa gtaaaatgca
     5941 taggggcaaa tcaacatttg cccctttatt aataattaac gaaacataaa gttatttctt
     6001 tgacggctac gtttaaattg gctgattagc acaatgaccg caacaattaa gtaaaccgca
     6061 aaagtaaaga ttagccattg tgccattgaa aagccgaaca tttcccattg gctttggcta
     6121 caattaaccg gaccgggggc aaacacttgt ggtagccatt ggtcaagcgg caaggtttgc
     6181 gggaaattaa ctttaaattc gcattgattc catggtgatg gattgacctg ataatcgtgg
     6241 tgtttgattg aaagtactag ccctttaaat gcgctaccaa gccaaattag aattgccaag
     6301 tagcgaataa tcgcatatct attaccaaga aatcctaaaa taccggcaaa taaaatacca
     6361 aataaagcaa ctcgctcata aatacacatt acacaaggta ctaatcccat cccatgttgg
     6421 aaataaagcg ctgtgccttc aagtataaga cagcttaaca ttagtaaaaa ccatgcactg
     6481 cgagattgtg atagattttt aaaaaaatag agcatagtta ttcctcattt tgtgaactta
     6541 aggcattcta ccttatttgg tatgagttat ctataaacta acgtgtaata aaccatcccc
     6601 aatttatcat tacttcagtc atagaaggta gtaagaattc taaccctaag aaaccgacaa
     6661 tagatagaac aatggtataa ggtaatgcca tatagaccat tctgccgtaa gacagtttaa
     6721 ttaacggcgc aaaggaggac gttaataaga ataagaaagc agcttgtccg tttggggtag
     6781 caacagaagg aagatttgtg ccagtattaa ttgcaactgc aatcaggtcg aactgctcac
     6841 gatctataat gccggcatct agtgcggttt tagcttcatt aatgtaaaca gtaccgacga
     6901 agacgttatc tgaaatcatc gagagcaaac cattgaaaat atagaataat gaaagctgtg
     6961 aatgtggttc ggcagataac acaaaggcaa tgatcggctc aaataatttt aaatcaataa
     7021 tcacggcaac aaccgagaaa aacacaataa gcaatgcagt aaaaggcata gattcttgga
     7081 atgctttccc taaagtgtgt tcatcagtaa tgccacaaaa tgcagtgcaa ataatgatga
     7141 tggttaagcc aataatccct acatcggcaa gatgtagcgc taagccaata attaaccaaa
     7201 ttccagcaat ggcttgcacc agcatcttta agcgatcttg tttcgtcatt ttttgttctt
     7261 ttagttggct atagcgagcg agtacgaccc aaactttgct aggaagccgg tctccataac
     7321 caaataattt atatttttct acaagaaagc aggtcgcaat cccacaaatt aacacgggta
     7381 agctaactgg taatgctcta agtaagaatt cgataaatcc ccattccgct tgggaggcaa
     7441 taattaagtt ttgtggttct cccaccatgg tcattacgcc acctaaagct gagccaatac
     7501 cggcgtgcat caataaactt cttaaaaaac cacgaaattg ctctaaaatt tctttattag
     7561 agatgatttt ttcatcattg gtaatatcag tagaatcttc aaagttatta cctgatgcga
     7621 ctttatgata tacgccgtag aaacctgttc caacgctaat gattacagca ataaccgtta
     7681 aagcatcaag aaaggcggat aaaaaagcag cgcttaagca gaaagaaagg gaaagaattt
     7741 ttttcgaatg aatggcgaca agcagtttgg tgaaaatata aagcaataat tgcttcataa
     7801 agtaaatacc ggcaaccata aacattaaaa gaagaataac atcaaagttt gccataattt
     7861 cttctttaat gtggtgagga tttgtcatac cgattacaac tgcttcaatc gctaataaac
     7921 cacctggctg taatggataa cattttaatg ccatagagag agtaaaaata aattcagcga
     7981 ctagaaacca gcctgcaaca aaaggattga taaagaaata aatgagagga ttgataatta
     8041 aaaatgccaa aatgcacaat ttataccact cggggctttt tcctaagaaa cttttgaaca
     8101 gagcatcaat gctactcata taaaggacct caaa
//
LOCUS       DANMGB010000107         8032 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.107, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000107 DANMGB010000000
VERSION     DANMGB010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8032
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.107"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            74..1795
                     /locus_tag="PXG19_001762"
     CDS             74..1795
                     /locus_tag="PXG19_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL6067045.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
     gene            1788..2279
                     /gene="ilvN"
                     /locus_tag="PXG19_001763"
     CDS             1788..2279
                     /gene="ilvN"
                     /locus_tag="PXG19_001763"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL6067046.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(2358..3245)
                     /locus_tag="PXG19_001764"
     CDS             complement(2358..3245)
                     /locus_tag="PXG19_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6067047.1"
                     /translation="MKKHQPIKGAMAIITAGVLFACINTLIPKLTSISPIDSNVIALV
                     QYLAAFIFLVPSMNNIGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGI
                     ALLMTSPLFVTIGSGLFLKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAA
                     AFFWAGYSLMVKKLSRYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGF
                     LILLGFFTALAQLAVAKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGA
                     AIIIAATIYITHAETKQSN"
     gene            complement(3299..4615)
                     /gene="argA"
                     /locus_tag="PXG19_001765"
     CDS             complement(3299..4615)
                     /gene="argA"
                     /locus_tag="PXG19_001765"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL6067048.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
     gene            complement(4744..4929)
                     /locus_tag="PXG19_001766"
     CDS             complement(4744..4929)
                     /locus_tag="PXG19_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL6067049.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            complement(5045..6367)
                     /gene="pepP"
                     /locus_tag="PXG19_001767"
     CDS             complement(5045..6367)
                     /gene="pepP"
                     /locus_tag="PXG19_001767"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL6067050.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            6583..6906
                     /locus_tag="PXG19_001768"
     CDS             6583..6906
                     /locus_tag="PXG19_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6067051.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(6983..8001)
                     /gene="glpX"
                     /locus_tag="PXG19_001769"
                     /pseudo
     CDS             complement(6983..8001)
                     /gene="glpX"
                     /locus_tag="PXG19_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT         2446 a         1704 c         1537 g         2345 t
ORIGIN      
        1 tagacatcaa taaaatttta ctgcaaaatc caaccatctt agagaagaaa atgctatttt
       61 gttggaggat tcaatgaaaa aactttctgg tgcagaaatg attgtacagt ccttaaagga
      121 tgaaggcgta gaatacgttt tcggctatcc gggtggctct gtactcgata tttatgatgc
      181 aattcataca cttggattga atcacgtttt agttcgacac gagcaaggtg ctgtacatat
      241 ggctgatggc tatgcccgtt caacaggtaa agtcggctgt gtgctagtga cttcaggtcc
      301 gggagcaacg aatacaatta ctggtatttt aactgcttat accgactctg ttccgttagt
      361 aatactgtcg ggccaagttc catcaagttt aattgggaca gatgcattcc aagaaagtga
      421 tatgatcggc atttctcgtc cggttgtaaa acacagtttc ttagtaaaaa atacagaaga
      481 aattcctgaa attatcaaaa aagcctttta tattgcatca accggtcgac caggcccggt
      541 agttattgat attcctaaag atgtagtcaa tccattaaat aaatatccct atgaatatcc
      601 gcaagaagta tcaatgcgtt cttataaccc aacagttcaa gggcataaag ggcaaattaa
      661 aaaagcatta aaagcactat tagtagcaaa acgtccagtg ctttatgtag gcggtggtgt
      721 aattagtgca gagggttcgc cagaaattac agagtttgca caaaagctaa atctacctgt
      781 aacctgttca ttaatgggat taggtgctta tcctgcctct gataagcaat atttaggtat
      841 gttaggcatg cacggcactt ttgaggcaaa taatgcaatg cacgaaagtg atttgatttt
      901 aggtattggg gtacgttttg atgatcgtac aacaaataac ttagcaaaat attgcccgaa
      961 tgcaaaagtg atccacgtgg atattgatcc agcctcaatt tccaaaacag tacaagctta
     1021 tattccaatt gtaggcagtg ctaaggatgt aatggaagaa tttttatctt tattaggtga
     1081 ggaaaatctt gcaaaaaatc aggtagattt aaccgcttgg tggcaacaaa ttgatgcttg
     1141 gaaagctcgt aattgcttag cctttgaaga aaacagtgat gtgattaagc cacaacaagt
     1201 gattagaatg atccacaagt tgaccaatgg ggaggcttat gttgcctcag atgttggaca
     1261 acatcaaatg tttgctgcat tgcattatgg gttcgataaa ccacgtcgtt ggattaattc
     1321 aggcggtgca ggcacaatgg gctttggctt acctgctgcg atgggggtaa aatttgccca
     1381 ccctgatgcc actgttgttt gtgtaaccgg tgatggtagt atccaaatga atatccagga
     1441 actttccacc gcaaagcaat acgacacacc gattgtgatt gtcagcttaa ataaccgttt
     1501 cttaggtatg gtgaaacagt ggcaagatat tatttactct ggccgccatt cacaggtgta
     1561 tatgaattct ctacctaact ttgctaaatt agcagaggct tatggccacg ttgggattca
     1621 aatcgaccac ccttctgaat tggaggcaaa attaactgag gcattctcaa ttaaagataa
     1681 gcttgtattt gttgatgtat tggtcgatga aacggaacat gtttacccaa tgcaagtgcg
     1741 tggaggagca atgaatgaaa tgatgttaag taaaacggag agaacagatg cgtagaacat
     1801 tagccgtatt attagaaaat gaatcaggtg cattatctcg tgtagttgcc cttttctcgc
     1861 agcgtggttt taacattgaa agcttgaccg ttgcccctac tgatgatcca agcctttccc
     1921 gtatgacaat tgtcgcgcaa ggcgaagaac aggtgttaga acaaatcgaa aagcaactac
     1981 acaaactcat tgatgtgttt aaagtgagta acttaagtgc ttatgaacac gttgagcgtg
     2041 aagtgttatt ggtaaaagtg cgagctacag gttcatctcg tgatgaactg aaacgtatgg
     2101 tagatattta ccgtgggcaa atcgtagatt taacaccgaa actttacacc attcaattat
     2161 ccggttctac cgagaagctc aatgcattta ttgaggcagt taaagaagaa acaacgattg
     2221 tagagattgt tcgctctggc gtgattagtc tatctcgtgg cgataaaaac gctctgtaag
     2281 cggtcaattt tagcttaaaa tttgcaaatc cctttatctt tgagataaag ggatttttat
     2341 gtagcgtgaa tttgttgcta attactctgt ttagtttcag cgtgagtaat ataaatggtc
     2401 gcagcaataa taatcgcagc tcctagccat aatttacccg gtggcaccca gttaaataca
     2461 agccaaccgg ctaatacgtt caaaggtaat ttaataaaat caaacggctg aatgtaggaa
     2521 gcatctgcta cactgtaggc tttggctacc gccagttgcg ctaacgccgt aaagaaacca
     2581 agtaagatta aaaagccgaa atcgctccaa gaaggcagac taaacccact agggctaagg
     2641 ttcgtgagtg caatcaacaa attaaaaggc gtaattagaa taaacaggta agcgaccatc
     2701 gtagttgggc tatcgtaacg agagagtttt ttcaccatta gcgaataacc tgcccagaaa
     2761 aaagccgcgg caatcggcag taacgcaatc atttcaaaat gatcgctcca aggctctaga
     2821 ataatcatcg ccccaacaaa ccccattgcg gttgcaatcc aacgcttttt atccactttc
     2881 tctttcaaaa acagaccgga gccgatggtc acaaacaatg gagaagtcat caataacgca
     2941 attccctgcc aaataggtaa ttggttagcg agtgccattg tccaacattg aataccaatc
     3001 gcagatagaa aaatacggaa acagtgttgc ccaaaatgct cggtttttaa tgaagagaag
     3061 aaaccgatat tattcatgct gggaacgagg aaaataaagg cagctaaata ttgcaccaat
     3121 gcaatcacgt tcgagtcaat cggtgaaatg gacgttaatt tgggaattaa ggtattgata
     3181 caggcaaata acacaccggc agtaataatt gccatagccc ctttgatggg ttgatgtttt
     3241 ttcatagttc tccttttata gttctcttgg taacaagcgg tcaaaaacat tgaatatttt
     3301 accaaagtgg taaaattaat actttagaac gacgttgata attgtaattt tcccgtttat
     3361 agcgaggtaa atcttgggca cctgccagcc taaatcctcg ctcttggaac cattgtgtgg
     3421 ttcttgtagt cagcacaaag agtttctcca ttcccagttg cactgcccgt ttttgaatat
     3481 tttccagtag aatatcccct cttgaggaat cacgataatc agggtgaacc gccacacacg
     3541 ccatttccgc cattttttct tccggatacg ggttaagtgc cgcacaagca atcaccacac
     3601 catcacgctc aataatggtg tagtttgtga tttccatttc taattgttct cgagagcgtt
     3661 tgactaaaat gccctgctgt tcaagtgggc ggattaaatc caataatccc ggaatatcac
     3721 tggaattagc aatacgtacc tgttccgagc tttccattga gaactgtgtg ccaataccat
     3781 cacgagagaa taactcttga agcaatgagc catcttcttt atagcttaat aaatgcgagc
     3841 gtttcactcc ctctcggcat accgtgatcg ccgcctgcaa aaaccgagct ttcggggtgt
     3901 gatattcgcc acgctcgatt aactgctgta acaaggtttc gccatcttgc ggaagataat
     3961 ctggaattgg cttgccgttt tcatctaaaa tcccctgctc ttcacaaaaa ccgattaatt
     4021 tatcggcacg aagtttaatt gcaacctgtg tggcaatatc ttcaaacggc agattaaaca
     4081 tttcaccggt aacagacggg gcaatcggac caagtaatac aatcgaattt tgtgccagtt
     4141 gctgcttaat gctctcaata ttaatacgac ggattttacc gcttagtgta taatctaccc
     4201 catccaccac gccaatcggc tgagctaaaa tcatattacc actgactaca ttaatcactt
     4261 cagaatgggg taaacgcaaa gaaaggcggg caaagaaatc ataatgaact ttccctaccg
     4321 cttgtttcac atattctagc gattgtggat tagtcacacg gatattgtgg taatactccg
     4381 gctcaatatg attttgtttt aacaattggt taatttgcgg tcttgcccca aatacaatca
     4441 ctaatttgat attcaggctg tgcaggagac tgatgtcatt gataatattg acaaaattcg
     4501 ggctttcgat aacatcgcca tcaagcataa tcacaaaggt tttgcctctg tgcatattaa
     4561 cataaggtgt agattgccta aaccattgag ctaatgcgag ttctgtgttt tgcatatatt
     4621 tcctctttat aatataaacg catattatct tttttagaaa aatccgcaag ccttaaattg
     4681 aataattaag cattatattt gcataaataa caaagccctg aaataatatc agggctttat
     4741 agattatgct tcagctttgg ttaaatcttt tacttctgtt tcaggtgtaa cttttttaac
     4801 tgcttcaatg cctttttgac aaccttgctt agtcgtataa gcttggttgg ttgcaataac
     4861 ttcgtggtta cccgctttta aacgccaacg aaattcttct tttgcatctt tgtaaatttc
     4921 aaaatacata taaacactcc ttcgtgttgt gattgcccaa acactgtgtt tgtgtcgggt
     4981 tagcttaagc taaattcccc aaaatatcaa agcaagcggt cattttttta caaaaatttg
     5041 cgaattaatt taacgattgc atcaactgct caacatccgc aatttcttta gggcaaccgc
     5101 tgcttaagtt tttgttgccg tattcggtaa tcagcaaatt atcttcaatc cgaatcccaa
     5161 tacctttata ttgctccggt acatccgcat ctttaggaat atagataccg ggttcaacag
     5221 ttaacaccat accaatctgc aaaggacgat cccgctccgt gccgtaatcc cccacatcgt
     5281 gaacatctag ccctagccaa tgccctaatc cgtgcatata aaattggcga taggcttttt
     5341 gctcaatcag gctttccaca tcaccgttta aaattcctaa gcgaaccaag ccctgcgtga
     5401 gaatctgtac agccttatcg tttgccgctt taatcgagct gtttggcaca agaagattaa
     5461 tcgcctcttt ttgcatagtt aaggttaatt cgtacagctc tttttgcggt tcggagaatt
     5521 tcccattaat agggaaggtt cgggtaatat cgccggcgta atacgcaaat tccgcccctg
     5581 catcaatcag taataaatcg ccgcctttaa gcacctgatc attttcattg tagtgaagaa
     5641 tacaggcatt ctcaccgccg gcaacgattg aattatatgc cggaaacctt gctccaaaac
     5701 ggctaaattc gtgttgaatt tccccctcaa tttcccactc ataacgattc gggcgagctt
     5761 gtttcatcgc tcgaatatgt gccattgaag aaatatgaca cgcctgctga attaaggcaa
     5821 tttcaaattc tgatttaatc aaccgcattt ccgataacat tggctgccaa tcaatcaagg
     5881 ttgtcggcac tttttgccga ttgactttca ttttttcaaa tgttgcaaac aaaatattat
     5941 cgccccactc ttgtatccct aacgcacaat aacaagcggt cagattttct aatttttttg
     6001 caagaacggt ttcaatgtca tcaatatcaa aagctgcgtt aagctgtaac gtttttggag
     6061 cttcctcaat ccctaaacgt ctgccattcc aggtttccat taaagggtct tttttacgca
     6121 caaaaataat actttccgtt ttaccttcgc tttttaccag caatacggct gatttaggtt
     6181 ctgccaaacc ggttaaatac caaaagtaac tatcaggtct aaacaagtat tcagagtcac
     6241 tattacggcg tttttccgat tcggtaaaaa ccaataacgc agaattatcc tgcatttgct
     6301 caagcacacg ctcacggcgt gcggtaaatt cttcttgtgg cattttagcc aaataagcga
     6361 gatccattat ttctcctttt tattatatct atatcgaaac ctgccttatt ttagcacaaa
     6421 cgcagcataa attcagccta accaaaacag atgaaagatt atatttgaga tcttgattgc
     6481 aaaaacaaaa cagattaaga ttaaatataa cctttacata tctaaacagg ttatatttaa
     6541 cctatgaaca cataaataat ctacttttag ctcaaaaata aaatgaaact atcaagcgaa
     6601 ctacaaaatc agataaacca actaaatcag ttacgaaaac aggcactcaa acaagagcaa
     6661 gacgagcaga aattgtttga aaaaaataaa attgaagatt tgccacattt tggcacgcag
     6721 cttaatgctc agaggaaact attaggcata gaattaacca cccttgaaat gcaaaccggc
     6781 atttcaagct ctaccctaaa acgcttattt aaagacccaa gccaagtgaa atttcagaca
     6841 atttgtattg tggcagaaac actcggcttt aatttatgtg caattaatac tcacaaacaa
     6901 gagtaagcgt gacaatgtag tgattttgat tactttggga agacaaaaaa tcgggctaaa
     6961 agcccgattt atcagagaaa agctataaat ccaataaaga aaggagttcg ttatctttac
     7021 gatcgacata atggtcggat tgaattttac gaatggttct agatttgcca cgaataagta
     7081 aggtttcagt gctggcaata ttgcctctac gtttaatccc ttttaacaat tcacctgaag
     7141 taatgccggt tgcaacaaag acgatattgt catcacgcac caaatcttct aatttcaaca
     7201 ccgtattcac cggtacattc atttcattac agcgtaaaag ctctttttcg gtagcagtta
     7261 aattttccgg gctattcccc ttcacttggt tgcgaggaat taaacgtgct tgcatatcgc
     7321 cacccaatgc acgaaccgca gcccccgcca ctaccccttc aggtgctccg ccgataccat
     7381 aaagcagatc caattcgctc tctggcaaac agcattgcac cgcagccgca acatcgccat
     7441 caggaatcgc aatcactctt acccctaatt tttgcacatc ggcaattatt ttttcgtggc
     7501 gaggcttagc aagatagcaa tggttaattg ggaaagtaat ttgccctttt tcgaggcgac
     7561 acggcgaaga ttttgttcaa gcggaagatt taaatcaatc attcctttgc attcctgccc
     7621 caccactaat ttttccatat acatatcagg ggcttttaaa aaggtttctt tgccgcctgc
     7681 tgctaatacc gacaacgcat ttgcctgccc cattgcagtc atacgagtac cgtcaatcgg
     7741 gtcaaccgca atactgattt cctcatcttc taggcgggat agaccgattt tctcgccaat
     7801 ataaagcatc ggtgcttcgt caatttcgcc ctcaccaatt accacttcgc cacggatttc
     7861 catttggttc agcataaacc gcattgcttt caccgcagct tcatcagcgg catttttatc
     7921 cccacggcct agccaagagt aagctgctag agccgctgct tccgtaacac gagaaaattc
     7981 aaaagaaaga gttcgtttca tttttgttcc ttagtttctt gaaagaaaaa ct
//
LOCUS       DANMGB010000108         7903 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.108, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000108 DANMGB010000000
VERSION     DANMGB010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7903
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.108"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..185)
                     /locus_tag="PXG19_001770"
     CDS             complement(<1..185)
                     /locus_tag="PXG19_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL6067052.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFS"
     gene            318..1061
                     /locus_tag="PXG19_001771"
     CDS             318..1061
                     /locus_tag="PXG19_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6067053.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(1138..3336)
                     /gene="priA"
                     /locus_tag="PXG19_001772"
     CDS             complement(1138..3336)
                     /gene="priA"
                     /locus_tag="PXG19_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL6067054.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(3348..3960)
                     /locus_tag="PXG19_001773"
                     /pseudo
     CDS             complement(3348..3960)
                     /locus_tag="PXG19_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(3953..4852)
                     /gene="rarD"
                     /locus_tag="PXG19_001774"
     CDS             complement(3953..4852)
                     /gene="rarD"
                     /locus_tag="PXG19_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6067055.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(5079..6296)
                     /locus_tag="PXG19_001775"
     CDS             complement(5079..6296)
                     /locus_tag="PXG19_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL6067056.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            6484..7788
                     /locus_tag="PXG19_001776"
     CDS             6484..7788
                     /locus_tag="PXG19_001776"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL6067057.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT         2404 a         1718 c         1533 g         2248 t
ORIGIN      
        1 ttagaaaaac aatcaattgt tgaagctaga ataggataac ctaagtgcac actaccttca
       61 ggcttaaagt tatcgataag tccacaaaat tcatattgtt cgtgatcaag tgaatctaac
      121 actgatttgg catagccacc ggcaccgatc aaaatcaatt tttctctttt agacttttgt
      181 tgcattgcta tcacccatga tgaatttcaa ttcatatgga gtattctaat acttttcaag
      241 atagaaaaat agacaagtct tatataattt aggaaaatga acatatcttt acttattttt
      301 actacgatat tctttctatg ttcgagttca ttaaactgat caccgcaatg atcctcccgc
      361 catttaatat tattttgctg tggttgttag cattaatcct cttttcttta ggctataaat
      421 acgctgctta cttctttgcc ttgttaggta ttctgatttt atatatcttc agcattccct
      481 atacttcaca gaaattaggg gattcattag tcgaagcaga gccatttacc atagagaaat
      541 ataaaaatgc tcaagcgatt gtggtgctag gtggcgggct acgagacagc caagagttat
      601 tcggcaaact ggcaattacc ggtattccgc tggaaagaat gcgttatgcc gcttatctgc
      661 ataaagaaac cggcttaccg attttagcga ccggaagcag cccaaatggg acttctgagg
      721 caaaggttat ggcagatgaa tttaaaatgt tcttcaatat tgagaccaaa tggctggaaa
      781 ataaggcgaa aaccaccaaa gaaaatgcga ttttcagccg tgagatttta gaaaaagaga
      841 atattcataa aatcattctt gttaccaacc aatggcatat gaaacgggct gaaatgctgt
      901 ttagccaaca aggatttgag gtgatgtctg ccagcgtcgg ttctggcgat acgcccgatc
      961 attacaaact caactttatg cactttattc cgcaagccgg tgcaatgaat agcaatatgc
     1021 tggcattaaa agagtggatt ggttattgga aagagaaata accgaagata aatagcagca
     1081 aggcaggttt tcacctgcct tctttttgca aaaaatcagt caaaaacaac cgcttgtcta
     1141 actaatctct tgtgggtcaa tgtcgatatt cagcctgata ttattcggaa tgtttaaact
     1201 ttccctttct tgatcaaagg catcgagtag ctgttgtaat gctcctcgga gagggtgttg
     1261 aatcagcaat aaccagcggt aatgtcctgc tttcttcgcc attggggctg aaaatggtgg
     1321 agggagctgg aagccttgcc cgttttgttg ctggattttt tggctaaaat aatctgctaa
     1381 ttgctcaagc agctgtaagg tttgttgatt atctttgccg gtcgctttga acaaaacttg
     1441 cgaggaaaat ggtggcaaac tcattaattg cctcattttt aacgcctcat cagcaaaagc
     1501 tcggtagcct tgttccagca aggttttaag cagtgggtga tcagggtaat gggtttgtag
     1561 caccacttcg ccttttttct ccgctcgccc tgctctgcct gccacctgta tgtaaagctg
     1621 tgctaatttt tcttccgcac gaaaatcagt tgaaaataac gctgaatcca cattaacaat
     1681 cgccaccaac gtcacattcg ggaaatgatg cccttttgcc aacatttgcg taccaatcaa
     1741 aatttggctt ttgccctctc gaatagcggt caaatggttt tccaatgcac ctttgcgagc
     1801 ggtagaatct ctgtctatac gagtcacttg gtaatgaggg aattgctgat ttagcacctg
     1861 ctcaagttgt tctgtgccga caccggtagt tattaaatgg gttgaaccac aatgtccgca
     1921 ttggcgggga attacccttt gggtggcaca atgatggcaa cgcaacactt tttgcttttg
     1981 gtggtaagta aaaggcttat tacacgcctc gcactcacaa acccaaccgc attcgtgaca
     2041 aagtaatacc ggggcaaagc cacggcgatt taaaaacagc atcacttgat tgccttgctc
     2101 taactgggtt ttcatcattg aaagcaagcg ctccgacaaa ccggcagtta cccgttgcgt
     2161 ttttaaatca ataatctgct gattggcaag ttgtgcattg ccggcccgag cggttagtgt
     2221 cagttcgata aatttcccgt tttgcacatt gtgcaaactt tcaagacttg gcgttgccga
     2281 gcccagcaca atcggaatat ttgcattttt cgccctaacc accgccaaat cccgtgcgtg
     2341 gtaacgccaa ccgtcttgtt gcttaaacga gctatcgtgt tcttcatcca agataatcac
     2401 gcccaatttt tgaaactggg taaataaagc agagcgagtg ccgattacaa tcgcactttc
     2461 tccatttttc gcccgcaacc acgcatttaa ccgctcagtt tcgttcatat tcgagtgcaa
     2521 tacgtcaatt tcaacgttaa agcgagcttt aaagcgttgt accgtttgcg gtgttagccc
     2581 gatttcaggc acaagcagca gcacttgttc ctctcgctta agcaccgttt caattaactg
     2641 caaatacact tcggttttgc ccgagcctgt tacgccattg agtaaaaagc tcgcaaaagt
     2701 ggtttgtgca tttaaacggc tgaccactaa ggtttgttgt ttatttaaga tcagccgatt
     2761 gttagtattt actaacggaa attcacctag tgagtcttgc cacgcttgtg ccataaacgg
     2821 cacatcaatt ttctcgatat accctttttc gagtaagcct ttccaagcag atgggctaca
     2881 agcggtcggt ttttcaaaat attttgcaca ttcggcaagc tcggttaacc gttccacctg
     2941 ctttttggct tttttatttt caccgataat cagagatttc cgcccttgct ccgtcaccac
     3001 aaaataattc ggttgaactc gctcagtgga atcgccattg cgtaatttta tcggtaaggc
     3061 tccggttagc acttcaccaa tcggggcgtg gtaataacga gccgcccagt tcagcagttg
     3121 ccacatttct gagtcaaaaa tcgggctaga atccaacgct gctttaatcg gtttgagttt
     3181 ttcggttggc acatcactag tttgcgggaa atcgaccaca atgccgattt tggtctggcg
     3241 accaaaaggc acaaccaccc gcccgccttg gcaggcattg aatgccggcg gtagcaaata
     3301 atcaaaataa cgatgtaacg gcacattcag tgccactctg attaatctca cttctctaaa
     3361 ccaattttga ttgcaagccc gataaatatc gagccgcaga ttttatttaa ccaatttcca
     3421 aaggtttgat tatgccgtaa aaaacgccca acaggtgcag cggctaagac taaaatactt
     3481 acccaaataa tgctggtgga taaaaacgtt agccccaaca gcataaaagg tattttccaa
     3541 attactggat acaaactgcg gcaataacgc caagaaaaag agcaatactt tcgggtttaa
     3601 tagattggta atcaaccctt gacggaatat cttccataga ggaagtttgt ctagattgat
     3661 tttctctaac accaacggct ctcgccacat tttaatgccg agatagcaga gataaattgc
     3721 ccctgcgtat ttcagaaaat taaataaagt gggcgaatgt gccacaatgc ctgcaagccc
     3781 gagtgaaacc gcaagaatat ggcataaaat gcctgctaga atgccgaatg aagacattaa
     3841 gcccgacttt ttcccctcag caatagtgcg agttaaaata tagatagtat ccgaacccgg
     3901 tgtaagattt agcagaatac aagcggtcaa aaatccccaa taatttacaa tatcactcat
     3961 tattcacact caatttacgt ttacgctgct gacgaagagc aaacatacca tctaatacta
     4021 aaaatgaaat ggagatcaac aagcaaatca tcaacaagta agattcattt gctaaccttt
     4081 cgccaattaa gaaagacacc accaacatca atagtggctc aacatagcct aataaaccaa
     4141 gcaaattaaa gggtaaaatc gtgctggcta gcgtatagct gataagtgca gtgccactaa
     4201 ttaaacccag taatgcaata aaatagtaaa tattgaggtt ttgtgtttcg acatattgca
     4261 tatcggtttg agagataaaa taacaagcta cagggagcaa atataaaatt tctaccacaa
     4321 agctatgtaa atggcttaag ccaaactttc ggcgaaggta aaaatagatt gggtaacctg
     4381 tgcaaacaaa taaacttgct atcgaaattt ttcccgtaaa caaaatatta ctcgctacac
     4441 caatgaaagc aaccacaatc gccaaccatt tattcaagga aagcgtttct ttataaacca
     4501 ctttgccaaa tgccaccata ataatcggca ttaatagata gcccattgaa acctcaatcg
     4561 cttttccgct attgggagcc cataaaaaca gccacatctg cccgcccaca atagatgccg
     4621 tgattaaaat aaccagcaat aaataaggct cttgctttag gcgttgaaga aatacccaaa
     4681 actcattttg ttttttaaat aagtataaag caaggaaaag aaaaggaatc gtaaccagca
     4741 tacgaatgcc gaaaatgctc acacctgcca gcggttttag aaagatcgcc aaatagtaca
     4801 tacagccgaa taacactgag gctgaaagag ataaaagaat gccttttaac atagtgataa
     4861 gaaagtaatt attttttaat ttttcaaatc tcccctaccc ctcttttcta aagaggattg
     4921 tcgagttcta aataaatgaa taatgttcgg aggtaggggc gggtccagtg cccgcccgca
     4981 aattaatatc gttagcggac aggcacagga cctgtcccta ctgatattat agaacttaca
     5041 accctgcttt tataaagtgg ggtaaaggga gattcgactt agtcttgacg ataggttttc
     5101 aagaaattcg caaggcgacc aatcgcttct tcaatttgat gtgcataagg caaagttacc
     5161 acacggaagt gatccggttt tttccagtta aaaccggaac cttgcactaa tagcactttt
     5221 tcttgtcgca acaaatcgta gatgaatttt tggtcatctt taatgccgta catttcggta
     5281 tcaattttcg ggaacatata taacgcccct ttcgctttta cacagctaat acccggaatt
     5341 tgtaccaata attcgtgcat tttatttcgt tgttccagca aacgaccgcc cggcaacaca
     5401 aattcattga tactttgata accacctaat gcggtttgaa tggcgtgttg catcggcgta
     5461 ttggcacata aacgcataga agagagcata tccaaccctt caataaaacc tttggcttga
     5521 tgcttcggac cgctcagcac catccagccc tgacggaaac cggcaacacg atacgccttg
     5581 gataaaccgt tataagttac ggttaatacg tccggtgcaa gagcagcaat atggtgatgt
     5641 accgcaccat catagacaat tttttcataa atttcgtcag caaaaataat taagttatgc
     5701 tgacgggcaa gttctgcaat ttccagcaaa atttgacggc tatacactgc tccggtcggg
     5761 ttattcgggt tgataaccaa aatcccttta gtgcgaggcg tgattttcga tttaatatct
     5821 tcaagatcag ggaaccactc attttcttca tcgcacaggt aatgcactgc tttaccaccg
     5881 gctagggttg aagctgctgt ccataacgga taatcaggca ttggaattag aatttcatcg
     5941 ccatcattta ataacgcctg catcgacatt gtaatcagtt cagatacgcc gttgccgatg
     6001 taaacatcgt ttacatccat accacgcata ccttttgatt gataatattg cacaatcgct
     6061 ttgcgggcag aatacaaacc ttttgaatca caatagcctt gtgcggttgg aagattacga
     6121 atcacatcca ctaaaatttc atcgggtgct tcaaagccaa aaggggctgg gttaccgata
     6181 tttaatttta aaattttatg cccttcttct tctaagcgaa gtgcctcttt atgaattggc
     6241 ccacggatat cgtaacgaac ctgagctaac ttatctgatt tgggaaaacg atccattgta
     6301 aacttcctat aatgtattat ctaattgtag tctcatcccg ctgttcaaaa aatcggtaat
     6361 tcggaatgaa tttgtaaaca ttactctaat ttgggaggaa aaaaaagagg aaatacgtta
     6421 aaatggagac ctttttttca atcagctaaa aacaagcggt ttctttttct gatttttttg
     6481 caaatgctta tttttcatca attaaaacaa gaacttacaa aaagttactc aaaagtggga
     6541 agagagcaag gattggtcgc cattcaagcc tctatgccgc tattggaggc aaatattccg
     6601 ctactcggtt ggttgaaaac acaaaaaaca agctaccctc acttttttct gcaatatcgt
     6661 gatacagatc agaccattgc caccattggc acacttcgcc aattttatac gctagaagct
     6721 gcacaatctt ttattcaaca acatcatttc ccgttaatcg gcgggcttca atttgaaggc
     6781 aatacgcaat ttattttgcc tcaattttca ttggtaaaaa atcagcaaaa tttaaccgct
     6841 tgcttctatt ttgatagtga taactttgaa caacaagcgg ttatttttga acaatttctt
     6901 gcaaatttca gccaaattac cgaattagga ctaacggata atccgctcgt ttcaatgagt
     6961 gccaccagcc attttgagca atggaaagcc aatattgaaa aagcgattgt ttctattgag
     7021 cagggcgatt ttcaaaaagt ggtattggca aatgcgatga gacttcattt tgagcaaccc
     7081 atttgtgctt acagcttgct ggcacaaagc caaaaaacaa atttaggttg ttaccacttt
     7141 ttatgggcgg aaagtgctga tgttgccttt cttggctcaa cccctgagcg gctatatcaa
     7201 cgccaagggc tacacttttc taccgaagcc ctcgccggca ccgctgcggt taccaccagt
     7261 gaagtgcaaa ccgaactcaa tgcacaatgg ctgttaagtg atcccaaaaa tatctatgaa
     7321 aatcaattag tggttgatga cattgaaaac caactcaaag attgcgtgac cgaatttgca
     7381 gtatccgagg caaaaattaa gcgtttgcat aatgtgcaac acctacgccg ccaaattcaa
     7441 gcaacgctca aaccggacac ctcagattca gattgcttaa gcaaaatcca cccaactgcg
     7501 gcagttgcag ggcttccccg ccaaaaagca aagggtttta ttaccgaaaa tgagcctttt
     7561 acccgccatt ggtatgcagg tacattaggc gtaatgggca acgaggaagc cgaattttgc
     7621 gtaacactcc gttctgcatt aatttcacaa aattcaatta cgctttatgc cggtgccggc
     7681 attgtgtcag gctcagatcc acaatcggaa tggcaagaaa ttaaacgtaa ggcacaagga
     7741 atggcaaaac tgttggatgt tgatttagta acaaaagggg aactgtaagc taggctttca
     7801 gaacttaatc tcttaattat ttctttctat attttcattt ccaacttccc aacaaaatat
     7861 attattgcca ccaaattagt agtgaatatt ccataattaa aaa
//
LOCUS       DANMGB010000109         7861 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.109, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000109 DANMGB010000000
VERSION     DANMGB010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7861
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.109"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            494..679
                     /locus_tag="PXG19_001777"
     CDS             494..679
                     /locus_tag="PXG19_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067058.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            663..860
                     /locus_tag="PXG19_001778"
     CDS             663..860
                     /locus_tag="PXG19_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067059.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            863..1837
                     /gene="ssb"
                     /locus_tag="PXG19_001779"
     CDS             863..1837
                     /gene="ssb"
                     /locus_tag="PXG19_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6067060.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(1924..2000)
                     /locus_tag="PXG19_001780"
     tRNA            complement(1924..2000)
                     /locus_tag="PXG19_001780"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1964..1966),aa:Arg,seq:tct)
     gene            complement(2025..2101)
                     /locus_tag="PXG19_001781"
     tRNA            complement(2025..2101)
                     /locus_tag="PXG19_001781"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2065..2067),aa:Pro,seq:tgg)
     gene            2271..3131
                     /gene="folD"
                     /locus_tag="PXG19_001782"
     CDS             2271..3131
                     /gene="folD"
                     /locus_tag="PXG19_001782"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL6067061.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            3245..4696
                     /gene="thiI"
                     /locus_tag="PXG19_001783"
     CDS             3245..4696
                     /gene="thiI"
                     /locus_tag="PXG19_001783"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL6067062.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(4741..5448)
                     /locus_tag="PXG19_001784"
     CDS             complement(4741..5448)
                     /locus_tag="PXG19_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL6067063.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(5516..6490)
                     /gene="pfkA"
                     /locus_tag="PXG19_001785"
     CDS             complement(5516..6490)
                     /gene="pfkA"
                     /locus_tag="PXG19_001785"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL6067064.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(6597..7793)
                     /locus_tag="PXG19_001786"
     CDS             complement(6597..7793)
                     /locus_tag="PXG19_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL6067065.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         2431 a         1537 c         1716 g         2177 t
ORIGIN      
        1 cttattaaat aagcttaaat tttgattgac ttgtaattta agttttctta aacttaattc
       61 atcaaaacga gctacggctc aatgctcttt aacaattcgg tgcttgtgcg gacgatatta
      121 acaacctcgg gcagttgtaa agtaatgctt tataactcag taaggttggt tagaccctga
      181 catacaaatt tgaacgactt gccaaaaaga ggtggcaagg tttaggcaac acactcgcaa
      241 ggtgtggaga gctgaaaagg caacactggt atcagtccta agcaatcacg cttatctcaa
      301 gtttgagtaa gtacggatac aagcagcacc cgacggaatg gcgaaagccg ggcgggcgac
      361 ggcgtgggca gacacgcatt tattccaaag ctcatttcac caagtgtgtt tcggaatacc
      421 cacaactaga cgcaagtcgc tccatttgcc caccgtaaaa cgtgggcttt ttttaaccct
      481 aaaggacaat cctatgaaca aaatgaaaca acttgcccca tttgccttgc taattttgct
      541 attaggcatt gtcgggcgaa tggattatga cgaccacata caaatgcaac gttacaaatg
      601 cgaacgaaat caaggctttt ggcaaatgga aagcaacggc aaccaatact gcggagggaa
      661 atatggcacg aaaaattgat gccggtgttg agattgttga ggtagataaa cgatttatcg
      721 ccaagttttt ttatgacggc aaattacagc acacaaccta tccacaatac aaccgccaaa
      781 acgcaattat gttgattaac cgcaaaattg agcggttcaa cattggcaga gacaaaccaa
      841 tcaaacttta taaggaataa caatggcagg aattaacaaa gtgattattg tcggtcgcct
      901 aggtaacgac ccggaactac gaacaatgcc aaatggcgat tcagtcgcca aaatcagtgt
      961 agcaacttca accgaatgga cggataaaac ctcaggcgag aaaaaacaag ccacagagtg
     1021 gcatagcatt atcgcctttc ggaatttagc tgacattatc ggcaaatacc tgaaaaaagg
     1081 ctcgcaagtg tatgtggaag gcaagctacg cactcgcaaa tggcaagccc aagacggcac
     1141 agaccgctgg acgaccgaaa tcatcgccga tcagctacaa atgctcggta gctcaaacag
     1201 cggaaacagc aataataatt gggcaaccga accggcagga aacccaccac caaccaatcc
     1261 atataaccac gtaatgacgg attcagaatc acgagatttt gatgatgata tccgggttcg
     1321 ttggattacc aaagaacaag ccaagcagtt tattaataat attagtactg attggatgaa
     1381 aactatctgc tcttttgctt tattaacagg agcaaggcga acagaaatac tttctatgac
     1441 ttgggataaa atagatttta tccgtaaagt agcgattgtt tcgaatgata ttgccaaatc
     1501 tgaaaaagcg agatcgcttt tacttaatga tgatgcaatt gaattattac aaaagcagag
     1561 agggaaaaat cctaaatatg tttttgtagg aagcaaaggg caggcattac aagatattaa
     1621 ccgcaaaata tttaacaaag cgactgaaaa atgtttattg gttgatttcc atttccatga
     1681 tttaaggcat acttgggcca gttggcacgt tcaggccggc acaccattat ttaccttaaa
     1741 agaattgggt ggctgggaaa cattagagat ggtaaagaaa tatgcccatc ttaatgcaga
     1801 ccatttactc aaccacgcta actcagttaa attctagtca caaattagtc acaaagtatt
     1861 tttgacatag gaaattaata actgatattt aaatgtaact atttgaaata taagggtaat
     1921 taatggcacg ccctaaagga ttcgaacctt tgacccacgc cttagaaggg cgttgctcta
     1981 tccagctgag ctaagggcgc agatgaagat aatataaaaa gaagtggtcg gcgagatagg
     2041 atttgaacct acgacccact ggtcccaaac cagttgcgct accaagctgc gctactcgcc
     2101 gacataagat gttgttgatt atagatttct ttgcacaaca gtcaatcttt ttttgtgaat
     2161 gtcggcttaa atgattgaag tttatccgtt attcaaaatt agcttatcaa aaaggctatt
     2221 ttttgagaga atgacgaatg ttttgccaag tgatatttcg ggaggtagta atgactgcac
     2281 aaattatttc ggggagtgag gtttcttcac aaattaaaaa aaaggtgagt gagaaaatcg
     2341 ctcattatct tgaacagggt aaacgtaacc ctggtcttgc ggtcatttta gtggggaatg
     2401 acccagcctc tcaagtgtat gtggggagta aacgcaaaag ctgtgccgaa attgggattg
     2461 cgtcgaaatc ttatgattta cccgaagaaa ccacagaggc tgaattatta gcactgattg
     2521 aaaagttgaa tcaagatgat tcggtcgatg ggattttagt ccaattaccg ttacctaaac
     2581 agatcgattc gactaaagtg attgaagcca tcttaccaca taaagatgtt gatggattcc
     2641 acccttataa tgttgggcgt ttatctcagc gtattcccac tttacgccct tgcacgccat
     2701 acggtgtgat gaagttgctt gaaacaactg gggtagattt atatggtcaa cacgcagtga
     2761 ttgtaggtgc gtctaatatt gttggtcgcc cgatggcgtt agaattgttg cttggtggtt
     2821 gtacagtcac agttactcat cgctttacca aagatttaga gcatcacgtt cgccaagcag
     2881 atattttagt tgtggcagtc ggcaagcctg aatttattcc cggggagtgg gttaaagacg
     2941 gtgctatcgt gattgatgta gggattaacc gtggagcaga cggcaaacta aaaggtgatg
     3001 tagagtattc agttgcctca caaaaagcgg catttatcac ccctgtcccc ggtggggtag
     3061 gcccgatgac ggtggcaatg ttaatgcaaa ataccttgca gacgtatgaa aaccatttac
     3121 aagcggtcta attttacgga tattttgcaa atcctcggca ttggtcgagg atttcttttt
     3181 ctgggctttt tcagcagaaa aggctaaaat acttgccatt tttattacac gatccttatt
     3241 aaatatgaaa tttatcatca aacttttccc tgaaattatg attaaaagcg actctgttcg
     3301 gaaacgcttt atcaaaattt taacctcaaa tattcgcaac gtattattaa aagagactga
     3361 aaatgtgtct gtggttcgcc attgggactt tattgaagtt cgggcgaaag tggacgaaga
     3421 aacggcatta gtgctggatt tgcttaaacg cacgccgggt attcaccata ttttagaagt
     3481 ggaggaaacc ccttttacgg atatgcacga tatttttgag cagacttatg ccgcagtgaa
     3541 agctgaacta gaaggcaaaa cgtttagcgt gcgggttcgc cgtaaaggaa agcacgattt
     3601 ccgttctctt gatgtagagc gttatgtcgg tggtgggctg aatcagcgga ttgaaacggc
     3661 gaaagtgaaa ttaaccaacc cagatgttac ggtcagaatt gatattgaac atgataaaat
     3721 gttgctgatt aaagctcgcc acgaagggtt aggcgggtat ccaatcggca cacaagaaga
     3781 tgtgttgtca ttgatttcgg gtggttttga ttcgggtgta tcgagctata tgctgattcg
     3841 cagaggttct cgtgtgcatt actgtttttt caatttaggt ggtgccgcac acgaaattgg
     3901 cgtgaaacag atggcatatc atatttggag ccgttatagt acctcgcaca aagtccgttt
     3961 tatcgccatt aattttgaaa atgtagtggg tgagatttta gaaaaagttg ataacggaca
     4021 aatgggcgtg gtattaaaac gtatgatggt gcgagcggca agccgtattg ccgagcgttt
     4081 tgatattcaa gcgattgtga ccggtgaggc gttggggcag gtctctagcc aaacactgac
     4141 taatttacgt ttaattgata aggcatcaga tacgctggta ttacgtccgc tcatcactca
     4201 cgataaagag cagattattg caatggcaaa agcgataggc actgacgata ttgctaaatc
     4261 aatgccggag ttctgtggag taatttctaa aaatccgacg gttaaggcaa tcgaaactaa
     4321 aattttggaa gaagaaggca actttaattt tgaggtacta gaacaagcgg ttcaaacggc
     4381 gagttattta gatattcgtg agatcgctca gcaaaccgaa aaagaggttg tttcggttga
     4441 aaccacaaca gaattgagta aaaacgatgt tgtgctagat attcgcagcc cggaagaggt
     4501 tgatgaaaaa ccattccgtt tagacggggt tgaagtaaaa gaactcccgt tttataaact
     4561 ttccagccag tttagtacgc ttgaccaaag caaaacctac ttgctctatt gccaacgtgg
     4621 ggtaatgagt aaactgcagg ctctttattt gaaagagaat ggctacagca atgtaaaagt
     4681 gtttcgagtg aaataatgcc tctttgattg caccttaatg attgattaag gtgcaatttt
     4741 ttaccaaata aggcttgcta aaaagagtaa gatcacagga aattcaagca ttccaacttg
     4801 tttaacattc cagccaaagc ttggcacaat aatggctcgg gcagttgcaa ttaaataagc
     4861 aaaaaagacc gcttgtagag agcagagtat gtaaagcatt gctaaaacca aatgtattgc
     4921 aatactgatt tccatataaa ttgggtttct tcgctctcgc accatactct ttatatagaa
     4981 agtcgtagca ataaaaaata gggtagggtg gagcagaatc tcaaactgat attgtttcgt
     5041 taccagataa taagctgcca ttcccattat gccaaaggtt agaatgccgg caatatcatt
     5101 ccataaattg cgttcatctt tttgtttggc gtagtgaact tgcactaacc caagcggtag
     5161 aattatcggt aaaaattgca aaatcgaagg ctgagcgtag atcaaaggta atgcaaatag
     5221 aatgcttaag ccaaagtaga ttttcgccca ttttttattg cgttcagttg gctttttact
     5281 gaaaagtgag agaaaagggt aggaaaagaa gtagagaaac agccacgaca gcccaaagaa
     5341 aatatgcaaa gtgctaaaac cactttcaat aacggcgtag agaaacggca acattgccat
     5401 tgctaatgca ccgtgttggt tggatataac gggtttttct ttgaacattc aatttccctc
     5461 ttaatgtggc aaataaaaag gcgactaaac agccgccttt aaattgtaag aaaagttaga
     5521 ataattttct agaggcttca aataattctt ctttgaacgg acgacgcata ttattgatcg
     5581 catcaataat atcgtggtga accaactgct cgttttgaat accgacacag tgaccgccaa
     5641 agccttgcag taataattcc accgcataga cgcccatacg ggaggccaaa atacggtcga
     5701 aggcacaagg cgaaccacca cgttgaatat gacctaatac ggttgcacgg gtttcattgc
     5761 cgaaacgtgc ttcaatttct ttcgctaatg cgtgaacatc ggtcatcaat tctgtaattg
     5821 caataattga atggcgttta cctttgtgga aaccttcttc aatgcttcgc attaatgcat
     5881 ctttatctaa gcctttttcc ggtacgatca catattcgca accaccggcg agggcagcac
     5941 ttagggttaa atcaccacag tggcgaccca taatttccac aatcgaaata cgttggtgtg
     6001 aacttgaagt atcacgcagg cggtcaatcg catctaatgc ggtttcaagg gcagtttgat
     6061 agccgatggt gtaatccgtt cccacaatat cgttatcaat cgtacccgga ataccgatac
     6121 aagggtaacc aaattcttcg gttaataatt tagcccccat ataagaaccg tcgccaccaa
     6181 taaccactaa tgcatcaatg ctgtattttt ttaaggtttc gacacaatgt ttgcgaactt
     6241 ctggtctttt aaaatcaggg aagcgggcag aacctaagaa tgtaccgcct cggttgatgg
     6301 tttcagacac ggaacggcgg tcaagtggga tcactttatc gtggtaaagc ccatagtagc
     6361 cgtcttgaat accacaaacc tctaaacctt cattaagtgc ggtacgaacc acaccacgga
     6421 ttgccgcgtt cattcctggt gcatcaccac cactggttaa tactgcaatt tttttgattt
     6481 ttttactcat ttaaaaacac cttgttgata aattaaagtt aaattggaaa ctggtgcaag
     6541 gttacaatat tcagcctttt cgttctacta aaaaatacgt atttttttga tttagcttag
     6601 ctttcttgca aaatttcaag ggtaaaatct agagcgttga aaaaatgctc aacatcttgt
     6661 tgattattgt aatgggcaag tgaaagtcga actgttccga cctcttctaa atggcgtaaa
     6721 taaggcttgg cacaatgctc cccttggcgg atcgcaattt tactttgggt taagaaagcg
     6781 gcaatatcgg cagggtgctg atttttcacc acaaagctaa tagtcggtgt attttgttgc
     6841 ccgataattt gcaaattttg ataagaattt aaccgcttgc aggtgtattc agccaagtca
     6901 taaagctgat gattaagagc gacaaaatcc catttttcga gccaagctag cacttgccca
     6961 aagccgataa tgccggcgat attcggcgtg ccagcttcca agcgataagg taactctgcc
     7021 acagttaatt cactttccgt aatgtttttc agcattttgc cgccaaatac aagcggttga
     7081 atttgctcca aactttgcaa tttgccggta agcacgccca caccgtttgg accatacatt
     7141 ttatgggcgg aaaaagcgta gaaatctgca tctaatttct gaacgtccac ttgctctgag
     7201 caaactgctt gagcaatatc taacacaatt ttagcagagc aagattggcg gataagcggg
     7261 attatttgtt ccgctggctg gcgaactcct gttacgttag aaactaaatt aaaggcaaca
     7321 attttggttt tttccgataa cgcattttta agggtttcaa gctcaatttc atacttatca
     7381 ttaagtggca acaccacgag tttcgccctt gtacgctgtg ccaactgctg ccaaggaata
     7441 aaattagcgt gatgttccgc cactgaaatt acaatttcat cgcctgctgc aatttgatgc
     7501 tccaagccat aagccacggt gttaatactt tgggttgtac cgcttgtcca aatcaccgct
     7561 tcacgagttt ccacattgaa acgttttgcg actaaatctc gagctaattc atattgttcg
     7621 gtttgtggca aatcgtactg actgcgatgc accgaccccg cagaagcgta aaactcactt
     7681 gttgcttcaa tgagtacatc aggtttcagc gttgtagcgg cagaatctaa atacgtccat
     7741 ccgtcagatt tttcaaaaaa agggaaatgg gtgcgaaatt gggtgttaag cataagttaa
     7801 ttcctaagag ttgtggaaaa ttgagttacc aagaaaatac ctattataaa ggaatgtttt
     7861 g
//
LOCUS       DANMGB010000110         7847 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.110, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000110 DANMGB010000000
VERSION     DANMGB010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7847
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.110"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            18..4214
                     /locus_tag="PXG19_001787"
     CDS             18..4214
                     /locus_tag="PXG19_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6067066.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(4269..5363)
                     /gene="mobA"
                     /locus_tag="PXG19_001788"
     CDS             complement(4269..5363)
                     /gene="mobA"
                     /locus_tag="PXG19_001788"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6067067.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            5450..5719
                     /locus_tag="PXG19_001789"
     CDS             5450..5719
                     /locus_tag="PXG19_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL6067068.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5783..6421
                     /locus_tag="PXG19_001790"
     CDS             5783..6421
                     /locus_tag="PXG19_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL6067069.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            6505..7281
                     /locus_tag="PXG19_001791"
     CDS             6505..7281
                     /locus_tag="PXG19_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6067070.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            7291..7545
                     /locus_tag="PXG19_001792"
     CDS             7291..7545
                     /locus_tag="PXG19_001792"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL6067071.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            7547..7840
                     /locus_tag="PXG19_001793"
     CDS             7547..7840
                     /locus_tag="PXG19_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6067072.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2621 a         1555 c         1479 g         2192 t
ORIGIN      
        1 ggataaactt ctcatttatg aagaccaaaa catttactcg ttcttatctt gcttcttttg
       61 taacaatcgt attaagttta cctgctgtag catctgttgt acgtaatgat gtggactatc
      121 aatacttccg cgattttgcc gaaaataaag gaccattttc agttggttca atgaatattg
      181 atattaaaga caacaatgga caacttgtag gcacgatgct tcataattta ccaatggttg
      241 attttagtgc tatggtaaga ggtggatatt ctactttaat tgcaccacaa tatttagtta
      301 gtgttgcaca taatactgga tataaaaatg ttcaatttgg tgctgcaggt tataaccctg
      361 attcacatca ctatacttat aaaattgttg accgcaatga ttatgaaaag gttcaaggag
      421 ggttgcaccc agactatcat actcctcgat taaataaatt agtaacagaa gttgtgcctg
      481 ccgcagtcac caatgcaggt acatctatta aaccctactt aaatgaagaa cgcttcccta
      541 tgtttcttcg tgctggttca gggacacaag cgctaagagg aaaagaaagt aataaaacaa
      601 ctggaatcgc tggtgcttat gaatatctta ctggcggtac cacattacaa ttatctaaaa
      661 gctcccctga tcactggtta gattattcaa gtaaccttta tcaagtaagc tatggaccac
      721 tttcaaccta tgcactacct ggtgatagtg gttcaggttc ttacgcctat gatatgaacg
      781 aaaaacgatg ggtattagtt ggtgtgctca atttctataa tggtatggat aatcaattca
      841 accgctctgc gattatccgt aaagatttcc acgagaaaaa atttgccgaa gatattgcag
      901 gaacaatcaa taataccgta caaaatgcac aattcaattg gactgctcaa ggtaaatcca
      961 gctctcttag tcaatcaaat aatgtgcaaa aactcaacgt tgatctaaaa gatagtagca
     1021 ttgcaaacca aaacacttct ctgccacaag aaaatcacgg taaaaccatt aattttaatg
     1081 gtaaagatgc aactattgta ctaaaacagg atattgacca aggtgcaggt gcattaaatc
     1141 tgaacgctaa tctcactatt cgtcctgaaa cagaccaaac ttggcaaggt gcaggtatta
     1201 tcgtcggtaa agataaaaaa gtgaattggc aagtaaaaaa tccacaaggc gatcgtttat
     1261 ctaaactcgg ggaaggaaca ctctatgtaa atggacgtgg acagaatctt ggcgatatca
     1321 gtgtaggtga tggtattgta atacttaacc agcaagccga tcaccaagga agaaaacagg
     1381 cctttaatac agtaggaatc gtaagtggtc gccccactgt tgtgctaggt agtgcagatc
     1441 aagttaatcc cgataatatt tactttggat ttcgcggagg tcgtttagac ctaaacggta
     1501 acagcatcgc ctttaaacgt attcaaaaca gcgataaaca tgctcgtatt gtaaaccaca
     1561 atcgcgatca catttctacc ttaataatac aaggccaaga tcctctcact agtaatgatc
     1621 ttatatgggg aaaatgggca agtaatagcc cagcagacat ttacgaatat accaatcctt
     1681 atcaaaataa acgcaaagat tacttccgtc tgaaaggtaa ttcgagagta tattatccaa
     1741 cgaatgctac aagtaacgat cactgggaat ttctttccag taaccgcgag caagcaatac
     1801 agaaaatcct agatgccaaa aacttaagac agcgctatga cacgtttaat ggttttatag
     1861 gggaagatgc ttccaataaa actaatggga tattaaatgt cgtgtttgat acaaaaacag
     1921 aagtaaatac agaacaagat aaattaaaga atatctacac aatgtcggga ggatttaacc
     1981 ttaatggtga actcaccctt aaaggtggta cattgttgct ttctggtcac ccaacgccac
     2041 acgcttatga tattaagaat aagcatgatg ttgtgcgtga aaacgattgg caagacagcc
     2101 attttactgc taaaaatatc acggtaaata aaatggcaca actctatatc gggagaaatg
     2161 tcaatgaagt aaatagtcac tttactgcga ctgataaagc caaactcaat ttaggattta
     2221 ttaatcgttc aacgccaagt tgctatgatt ctgaatacac aggcactaca cattgtgaag
     2281 tgcaagcggt catttccgat aatatttttg caaatctagc aacaaccgcc attaaaggta
     2341 atgttaaatt acaaaaccat agccaattaa atttaggcaa agcaaacctc actggttctg
     2401 tacaagctga tcaaacaact catatcactt tagcaaatca cagtcactgg ttaaacaatg
     2461 gtacgagcca gattgggcat cttacaatgg aaaaagggtc gatccttagc ctaaacgata
     2521 aatttgctac cacggaaatc ccagtccgat tcaacaagat gatcatccaa ggtaatctaa
     2581 aaggtaatgg acgaattaac tataccgcaa atttagccaa gggcgaatct gatcatctcc
     2641 aagttgacgg tattgctgaa ggaaattttg tccttgccgt tagaaatagc acaactgaag
     2701 caaatccaaa aagctcatta aacctactaa gcttaaaaaa tagcaaccaa gaaggcaata
     2761 aagcttctat ttctctagaa aataattatg ttgatctagg tacttatcgt tatgtattag
     2821 aaaatcgtaa tcacaattac catttattta atccattaat accaaattca acctctaaag
     2881 agatgaatgc tacatctgta tcctctattc caaaaaagga atctgttact aatgttccta
     2941 ctttagataa gaaagaaact gaacaaaatc ttactcaact acaaaaagat ttttcagcac
     3001 accaattaga aaatcaaaaa gcaaaacaat ctatgataaa tgctcaatct gagctaagac
     3061 gactcaattc acaactgaat gtattgcaaa aatatgtgaa ttctcgtcgc ttaggttact
     3121 atactcagca ggcagtttta gaacaaatta gcattattca aaataaaatt aaacaaacac
     3181 aaacaatatt taatgacgct aatgcaactg taaaactcac agatcaaaag ctagaagaag
     3241 ccaaattagc tctaggctct gtaaacgatc ttgtattaat aaaagcctct gctccagcaa
     3301 tgcaagcaac taatcaagat acgagtatga tgaatattat tcaagcagat tggataagcc
     3361 aatacgctaa cacagcactt tctgaactct cggcacaggc taattctgct ctgcaaatca
     3421 gtaatagctt agatcgccaa ctcttcaaac aaagcgataa attcaacgta tggagcagcg
     3481 tcgaacatca gaaaaccgag cataaatcag atttataccg cccgtataaa caacaaacca
     3541 acctgaccca actgggcata caaatgccga tagataacgg tttaatgttt ggagttgcat
     3601 tatctaaaaa ccacgctaac gcggaattta acgagggtgt aaacggtaaa tcgaatctac
     3661 taatggcaag cctatatggt aagtggcaat ctcaacaagg cacttttatc agccttgatg
     3721 gcagctacgg taaagcaaaa aaccaactct acctatttgg tgaaaaccac tttacccgcc
     3781 gaatttcctc tattggtgct aacattggac atcaatttga cctcgcagga gttcaaattc
     3841 agccaacaat aggagcaaga tactaccatt tcagcggcca agactataca ctaggaggag
     3901 cgaaaatcag ctcaccaaat acccacttta tgacatatca agcgggtcta aaagctagta
     3961 aaaccttttc attggatgac tggaaagttg aaccaagcat tacaacccac tatgtggatg
     4021 caagtaacaa acgcttagca gtaaacgtca ataataacaa tatcaaccaa cgtttcggtc
     4081 gctatctgaa aaccgaagct ggtatccgat ttgaacataa ccaatggcaa ttcgacttac
     4141 acgctggttt cattaacggc aacgaaatca aaaaacaaca ttttgctggt gttaagctag
     4201 gatatagctg gtaagaaaaa gcccctagaa ctatttctag gggctttttc tactcttaaa
     4261 aagagtatct aacttgcctt attttctaac caattcttaa taaaatctgc tattccccca
     4321 atattattaa tatccaacca attttctctc tcaagcgggt aatccgttgc ggtggcaatc
     4381 gtccattggt ctagctctgg caatggtttt tcaatccctt tgcggtggag ctgaattttt
     4441 ggcaaggttt cgtgtttaaa gccttctacg aaaacgagat caacctcttg cgggttgaat
     4501 tttgcaatta attgagaaaa ttcgaccgct tgtttggttt ctgtcattaa tgcccaacgt
     4561 tcatcgcaca caatcattgt cgggtttgct cctgcttcac gtaggcggta gctgtctttg
     4621 ccttttttat ctacatcaac gttatggtgg gaatgtttaa tcagcccaac ccgaataccg
     4681 caagcggtca attttgggat taatttttcc aataaggtgg ttttacctgt gccgctgtag
     4741 cctgtaattg caaggttttt tacagggaat tggcttactc ggcttaaatc ttccaatgta
     4801 ttcacgttgg tgaatgccga tttttgttcg gaaaaatcaa ctgccacgct tttttgtgat
     4861 tggaagaacg caagcaattg ctgttggttt gagcctaaat aggctttcaa atcttcttgt
     4921 accgaacgat gaatcaacgc aaaagtggga tgtggacgct caccatcatg ggcatatgca
     4981 atttgtacgt tatttatccg caaagcagtt tttaattttt gcaataacag ctcaggcata
     5041 aagggcgtat cgcaaggcac aaaaagcaaa tagtcacttt caatttgctc aaatcctgcc
     5101 agcattccac tgagtggacc ttgaaaatca ggcaagctat cttgatagta agaaaaagca
     5161 ggataaagct gctgatattg ctcaatagaa cgattgacat taagccaaat gtcactaact
     5221 tgtggtgaaa gtcgggctaa aatgtgtgaa ataagcggtt ttccttcaaa aagttgtaac
     5281 cctttttcta ccccattcat tcgacgagct aaaccgcccg ctaaaatcac ggctgaaatg
     5341 cgttcttcta ttgttttact cacagcttta tcccttaaaa ttttgcaaaa ataagagtaa
     5401 aagtatatta tttcgtttaa tttccaacaa gttttttaag gggtaaaaga tgaaatgcga
     5461 acgtttagaa gagttattag agttacttgg cgaacattgg cgtaaaaatc ctgacttaca
     5521 cctcattgat attttgcagc agctttcagt tgaagtgggc gagcctgata atttcaaagc
     5581 gttaagcgat gaagtgttaa tctatcagct taaaatgcga aatgcaggca aatttgagcc
     5641 tattcccggc ataaaaaaag attatgaaga tgattttaaa acggctttat tgcgagctcg
     5701 tggaatttta aacgattaag attgtcttat ccgttagcta gtttagcatt tattatttat
     5761 caacattttt gaaggaatca ttatgaaaaa attggcatta aaaacggcat ttgttgcact
     5821 ttctgccctt tttacattta actcaacggc aatcgctgct gatccaaccg caggcaaaga
     5881 atatatcgaa gtgcgtaaag caccttctgc acaaaaagaa gtggtggaat ttttctcatt
     5941 ctactgccca cactgttatg attttgaatt aagctacaaa atcccaagcc aaatcaaaga
     6001 aaaattacca agcgatagca aattagtgca atatcacgtt aatttcttag gtcgccaatc
     6061 tgaagattta actcgtgctt gggcattagc aatggcatta ggtgcggaag ataaagtaaa
     6121 aaccgcatta tttgaaggtg ctcaaaaaga cgcattcaaa tcaatggacg atattcgctc
     6181 tgtattctta gcaaacggca ttacagctga acagtttgat agcggtatta atagctttgc
     6241 ggtaaatggc ttagtgaata aacaagttca attagcggaa gacttccaaa ttcgtggtgt
     6301 gcctgcattc ttcgtaaatg gtcaatacca actcaactta gaaggctttg cagattcttc
     6361 atcaacgaat gatttcatca aacgttatgt tgatgcggtt gtgttcttaa gcaagaaata
     6421 accccttaaa atagttaggg tttttacaat gctgagtagg taaatcctat tcagcatttt
     6481 ttatatgcaa actcggagaa caaaatgaca aagttatcta tcctaaacct tgtacctatt
     6541 cgtgaagggc aaactgccaa acaagcggtc gattctatgg tgaaattagc aaaacacgcg
     6601 gaaagtatcg gcattgaacg ctattggatt gcagagcacc acaatatgaa aaaccttgcc
     6661 agctcggcaa cacagctcct cattcagcat gccctttctc acactgaaaa attaagagtg
     6721 ggatcaggtg gcgtgatgtt gcctaaccat agtccttata ttgtggcaga gcaatacggt
     6781 acgcttgaaa cactctaccc taaccgtgta gaacttgggc ttgggcgagc accaggcacc
     6841 gatatgcgaa ccgctaccgc tttacgccgt aatgcacaaa gtctgccatt tcctgatgaa
     6901 atcagcgaac taaaaggtta ttttgaaggc acaaattctg tgtctgccta ccctgcacag
     6961 gggttgaatg tgccgtttta tattttaggc tcaagccctg aaagtgccta tttagcagca
     7021 gaacgtggct tgccttatgc ctttgcttca catttcgctc ctcgttttat ggacgatgcg
     7081 gtgcgaattt atcgcacaca ctttaagccg tctgaagtgt tagataaacc ctatgtgatt
     7141 ttaggtgtga atgcgattgc ggcagaaacc gaccaagagg cagaacagct tgctaccact
     7201 cagactcagt ttttcttaaa tgttgttacc aatgcccaaa actatttaca accgcccgtc
     7261 gaatccgatg ataaagtgtg aaaaaatttt gtgaaagcgg aaatcgtacc gcatttcggg
     7321 cctgtttcgt tccaacaaaa tgcgttatac aaccaagaga aacccgttgt tcgccaaatg
     7381 actgcttgtt cacttatcgg tagccgagag agcattgaac aacagctcaa gtcattaaaa
     7441 gcacgcattg aaattgatga aattatggcg gtaagctaca ttttcgatga gcaaaaacag
     7501 catcaatcct atacttggtt aaaagagatt gcagataagg tgtgatatga gcaaaacaat
     7561 gcaacaaaaa gccgctgatg cacataatat gtgtaagcta aaaggcgact ctatgttaga
     7621 taactcagac cgccaaattg cctttgaagc agtgtatgat agtgaagaaa tagctgtaca
     7681 agcggtcgaa tttttcacac aaaaagcaaa atcggtagaa accgagcctt gcgacattca
     7741 aagtgaaatc acacccatta tagatggctt tctgatgaaa atgtggataa ctttcagttg
     7801 ccaagcagaa gtaatcttat ttcaaatggc ggtgagatag atataaa
//
LOCUS       DANMGB010000111         7834 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.111, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000111 DANMGB010000000
VERSION     DANMGB010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7834
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.111"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(71..292)
                     /locus_tag="PXG19_001794"
     CDS             complement(71..292)
                     /locus_tag="PXG19_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067073.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            complement(379..1176)
                     /locus_tag="PXG19_001795"
     CDS             complement(379..1176)
                     /locus_tag="PXG19_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067074.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            complement(1178..2110)
                     /locus_tag="PXG19_001796"
     CDS             complement(1178..2110)
                     /locus_tag="PXG19_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6067075.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            2352..4085
                     /gene="dauA"
                     /locus_tag="PXG19_001797"
     CDS             2352..4085
                     /gene="dauA"
                     /locus_tag="PXG19_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL6067076.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            complement(4177..7005)
                     /gene="uvrA"
                     /locus_tag="PXG19_001798"
     CDS             complement(4177..7005)
                     /gene="uvrA"
                     /locus_tag="PXG19_001798"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL6067077.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            7160..7675
                     /locus_tag="PXG19_001799"
     CDS             7160..7675
                     /locus_tag="PXG19_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6067078.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
BASE COUNT         2210 a         1844 c         1537 g         2243 t
ORIGIN      
        1 atataaagcc aagcaaacgc aaagacgttt aaaattagca aacctatggt taaattccag
       61 cctagttcca tcacaacacc tcctttagct gccgtaattt tcgcccaagc gtcaaaaaaa
      121 cataaatact caataccaat aatgctaagt tagtcaattt aatcaacgtt ggttctttgc
      181 caaaaagtat aacaggaatt gccaaaatcg caactttcgc tacatcaacc gaaattttag
      241 cccaatcgtc tagcgtttct ttctctaccg gtgttttgaa aatgcttaac attgaatacc
      301 tccttttggg cttattattt aaaatttgac agccaaaaac aaaaggagaa attcattttt
      361 tcgatgcaga tcgcaaaatt aattgccgag taataatcca tcgtcactca actgctcgtg
      421 gcgactttgt tggaaaagtt gtaacagatc cggcacgtcc attttttgcc gttgctcgcc
      481 cgaaacatca aacgccactt gcccttggtg taacatcacg gttctatcgc catagtcaag
      541 ggcttgccgc attgaatgcg ttaccattag cgtggttaat ttctgttctc ttacaatttt
      601 attggtaagt tcaagcacaa aatcggtggt tttcggatcc agtgccgcgg tgtgttcatc
      661 taacaataag atattagacg gctgaagtga tgccatcagc aagctcaccg cttggcgttg
      721 cccgcctgat aaacgcccca tttgatcagt aagccgattt tccaaaccta gccctaacaa
      781 agcaagtttg tctttgaata actctcgcat ttggcgtttg atcgcaaagc ccaacccacg
      841 tttacgtcca cgttggtaag ccagtgccat attttcttca atcgttaaac tttcacaagt
      901 gccagccatc gggtcttgga aaactcgggc gacttgattt gcccgttgcc aagtggtgga
      961 ttggtttacc ttatttcctt gaattaaaat ctcaccggag tccaccgcac aatcaccact
     1021 gatcgcattt aataaggtag atttacccgc cccattgcta ccaattaccg acacaaattc
     1081 gccttgctca acttttaggg ataagcctct cagcacaggg ttctcaattg ctgtcccttt
     1141 gttgaaggta ataaataagt tattgagttc aatcatatta acctcgctta ccgagcaatt
     1201 tgtgtttaat tcgaggaacc gctaatacaa tcaccaccaa taacgccgta attaaattca
     1261 gatcttgcgg gccaaagcca atgccgttta aagtttcgtt atttaatgct agtgcgatga
     1321 agaaacgata aagaattgag ccaataatca ccgcaaaggt aagccaaata atccgtttta
     1381 ccgaaaaaat tgcttccccg ataattaccg ccgccaagcc aatcacgata gttcctaccc
     1441 caatcgaaat atctacacca ccgttgcttt gcacatacaa agcaccacct aaggcaatta
     1501 acgcattaga aatcgccatc cctaaaatcg tcattttatt aatcgcaata ccctgtgctt
     1561 tcgccattcg actattagta ccggttgccc gcacagccaa accgatttcg gtcgcaaaaa
     1621 agaggtcaaa caaacctttt acgataataa caaccagcaa tgccatcact aatcgtacta
     1681 aggctaactg tagatcgctt tcaatcggca ttacatcgta aatcgtggtt tcgcctaaaa
     1741 tagcaatatt cggcattccc ataatgcgta gattaatcga atagagtgcg atcatcatta
     1801 aaatactggc aagcaatttt tcgattttaa agccgatatg caaacttgca gtaaccatac
     1861 cggctactgc tccggcaagc gtgccgtata aagttgccag ccaaggatca acttgattca
     1921 aaatgctgat cacacacacc gcccctccta aagggaaact gccgtctgcg gtcagatccg
     1981 gaaaatccag aattttataa gaaattaata ccccaagggc aacaagggaa taaattaacc
     2041 ccagctctaa cgccccaatc caagtgatat tagttaaaaa ggcactcaaa aaatgaataa
     2101 gactgtccat ttgtttatta tagttaatga aatcacacaa atgcactact atagtagtac
     2161 aaattaaagt ggcattttac gctattttca aaataaaatc agctaattat ttgtatttgc
     2221 aaatttttcg cctaaaacaa ccgcttgtct ccaacatatt tcgtctttcc tgctttttct
     2281 tgcgttagct caaatttaat tttattcatt gcagtaaaat aagcgaaaca ttctcttcac
     2341 tcgaacattc tatgttaaat aaatggtttt taactaaaaa tgcttttctt gccgtcaagc
     2401 cttttagtgc attaaaagat gctctcaatg caggttatgg taaacaacat ttaatcagag
     2461 atattatttc aggcttaacc gttggcgtta ttgctattcc gttatctatg gcgttggcga
     2521 ttgccagcgg tgtgccacca cagcacggtt tatatacggc gattgttgcc gggattgtga
     2581 ttgccctaac aggcggttca agatttaata tttcaggccc aacagccgct tttgtggtga
     2641 ttctataccc cgtcacgcag cagtttggct taagtggatt actcatggca acaatgcttt
     2701 ccggaggaat tttagtattg atggcgttac tccgattagg acgcttaatt gaatacattc
     2761 ctctacctgt cacactgggt tttacctgtg gcatcggtat tgtgatcgcc accttgcaaa
     2821 tcaaagattt tctgggctta agcattgaaa aaatgcctga acactatctt ggcaagctag
     2881 aggctatttt ttcagcattg ccaaccataa attgggctga caccttagtg ggtgtcgtaa
     2941 cattgttggt tttaactcgt tggcacaagc tacggttgcc tattcccggg catttacccg
     3001 ccgtctttat cggcacgctg ttatcattac tgctgattca tttcggacaa aacgttgcca
     3061 ctatcggctc agcattccac tacacgctct ctgacggcac cactgggtat ggtatcccaa
     3121 gcgtattacc tgaatttgtg ttaccttgga atctcccgaa tgcagagggg aatcggatag
     3181 attggaactt aaccaccatt caagccttat taccggctgc cttttcaatg gcaatgcttg
     3241 gggctatcga atcgttatta tgtgcggtag tgtgcgataa tatgacagat accaagcacc
     3301 actctaacaa cgaactatta gcccaaggct taggtaatat tgcctcgcca tttttagggg
     3361 gaattaccgc cacagcagcg attgcgagat cggctgccaa tgttcgttcc ggggcagttt
     3421 cccccatttc tagtgtggtt cacgccttgt tggttttatt tgccctactc tttttggcta
     3481 aagcactttc ctatttgcct ctttcctcaa tggctgcact attattggta gtagcttgga
     3541 atatggcaga tattccacaa atcattcaac ttacccgccg ttcaggtaaa aatgaaattg
     3601 cggttttact gacttgcatt accctcacgg tattatttga tatggtaatt gccattacgg
     3661 taggggtgtt actggcaagc ctgctattta tccgtactat tgcagaaatg actaaatcct
     3721 ttgaaatggc tcacccaacc gatttgaacg atgtgttggt ttatcggatc agcggtccgt
     3781 tattttttgc tgccgccgat aatctctttg ccgatctgca caataaaacc gtacataccg
     3841 atcaccaaat taaacatatt gtgctgcaat gcgatgccgt tacagtatta gatgctggtg
     3901 gcattcacgc cctaacccgc tttgtacagc atatgttgcc acatcaacaa cttcatctct
     3961 gtaatgtgca atttcagccg atgagaatgc tagtccgctc acaaaaaacg gtaaacgaaa
     4021 tcccgcaaat tcaattcagt agcgatcttg aatctgcctt cgacaaaatc agacaggcta
     4081 actaggaata actccggata taaaacaagc ggtcatattt tccaactttt tgcaaattgc
     4141 aacattttcc gaaaatatga ccgcttgtgt tgaacgttag cctttagcca aaatctcttt
     4201 taagaagcgt gcggtgtgag aacgtttgtc ttttgccact tcttccggtg tgccggtagc
     4261 aataatttca ccgccgccac tgccaccttc agggccaaga tcgacaatcc agtctgcggt
     4321 tttaatcaca tctaaattat gttcgatcac cacaatcgta ttgccttgat cacgcaggcg
     4381 atgtagcacg ccgagtaact gtttaatatc ggcaaaatgc aagccggtgg tcggttcatc
     4441 taaaatatag agcgttttgc cggtgtctcg tttggaaagc tcggtcgcca atttcacccg
     4501 ttgggcttca ccgcctgaga gcgtagtaga agattgccct aaacggatat aagataaccc
     4561 cacgtccatc aaggtttgca acttgcgggc aatcatcggc ataggggcaa aaaattctct
     4621 cgcctcttcc accgtcatct ctaacacttg gtgaatagtt ttgcctttat agcgaatttc
     4681 caaggtttca cggttatagc gtttgccttt acagtgatcg caaggcacat acacatcagg
     4741 caagaagtgc atttcaactt taatcacgcc gtcaccttga caggcttcgc aacgtccgcc
     4801 ccgcacatta aagctaaacc gccctacgtt ataccctctg gctcgagctt cttgcgtgcc
     4861 ggcaaaaatc tcacgaattg gcgtaaataa tccggtgtaa gttgccggat ttgagcgagg
     4921 agttctccca atcgggcttt ggtcaatatc aattaccttg tcaaaatgcg ataagccgtc
     4981 aatcgattca taaggagcaa catcgctgtt ttccgctcgg tttaacgcat tctgtgccag
     5041 agggaatagt gtgtcattaa ctaaagttga tttgcccgaa cctgatacac ccgtgataca
     5101 agtaaataaa ccaaccggaa tctctaattt cacttttttc aagttgttac cacttgctcc
     5161 cgataaggtg agcaatttag ttggctcata aggcacacgc tgagccggaa tctcaatttt
     5221 ttgcttgcct gagaggaatt gtccggtaat agattcctca atttgcataa tttcagctgc
     5281 cgtaccttgt gcgataactt gcccaccgtg tacaccggca cccgggccta tatccacgat
     5341 atgatctgcg gctcggatcg catcttcatc gtgttcaacc acaatcacgg tattgcctaa
     5401 attgcgtaaa tgcaccaaag tattcagtag gcgttcattg tctcgttggt gcaagccgat
     5461 ggaaggctca tccagcacat acattacccc tactaaaccc gcaccaattt ggctggcaag
     5521 gcgaatccgc tgagcctcgc cacctgaaag ggtttctgcc gagcgggaaa gagaaagata
     5581 attcaagccg acattcacta aaaactgtag ccgttcacga atttctttga ggattttctc
     5641 agcaattttt tctttctgac cggctaattt cagctcttca aaaaaggtta atgcctcgcc
     5701 gatacttttt tccgaaacca tcggcaaatt ggttttatct aagaatacat aacgggcttc
     5761 acggcgtaac cgtgagcctt cgcaatccat acaaggacga ttattaatat acttcgccaa
     5821 ctcttcacgc accgagtttg attcggtttc tttatagcgg cgagccatat tattcagcac
     5881 cccttcaaaa gcgtgtttac gtttgacctt atcgcctcgg tcattgacat aaacaaactc
     5941 aatctcttct ttagtgccgt ttaaaataat gttttgatat tttttcggta gctgcccgaa
     6001 tggggtttct aaatcaaagc cataatgctc ggcaacggct tttaataagc caaaatagta
     6061 gaaactgcgg cgatcccagc ctttgatcgc accggcggct aatgaaacct cttcattttg
     6121 cactactttt ttggcatcaa aaaactgctc aacgcccaaa ccatcacaag tcgggcaagc
     6181 acctgccggg ttgttaaacg agaaaaggcg tggttctaat tcgtgtaaag agtaaccaca
     6241 atgcggacaa gcaaagctgg acgaaaacac aatttcttcg gcatttgggt cgtccatatc
     6301 tgcaataatt gcggtagagc cggataaatc taacgctgtt tcaaaagatt ccgccaaacg
     6361 ggtggctaga tcagccctta ctttaaagcg atccaccacc acttcaatgg tgtgtttttt
     6421 ctgtaattct aatgccggtg ggtcggataa atcgcaaatt tcaccgtcaa ttctagcccg
     6481 caaatagcca ctagcggtca aattttccaa taattttacg tgttcgcctt tacgctcttt
     6541 caccacaggg gcaagtagca tcaaccgttt tccttccggt tcttccaata ctcgatccac
     6601 catctgcgaa atagtttgag cagccaatgg cacatcgtgg tcagggcaac gaggctcgcc
     6661 cactcgagca aacaataaac gtaaatagtc gtgaatttcc gttaccgttc ctacggtcga
     6721 acgtgggttg tgagaggttg atttttgctc aatcgaaatc gcaggggaaa gcccttcaat
     6781 atgatccaca tcaggctttt ccattaagga gagaaactgg cgggcgtatg cagacagtga
     6841 ttctacataa cggcgttgtc cttccgcata gagcgtatca aacgccagag acgatttgcc
     6901 cgagccggaa agcccggtaa ttacaatgaa tttatctctc ggcaaggtta aattgatgtt
     6961 ttttaagttg tgtgttcttg ctccacgaat atcgatatgt tgcatatttt taatgtccag
     7021 tgctattttc tcaattttcg atcattatcg catattttaa taaaactgta caaaatatca
     7081 gttttttggt gttcatcttt tggattttca ggtagaatac ttagcaaatt ttagtttaat
     7141 ttatcaaaca gaggatttta tggctggtat caataaagta attattgtcg gtaatttagg
     7201 taacgaccct gaaatgcgta caatgccaaa tggcgaagcg gttgcaaata ttagtgtggc
     7261 aacctcagaa agctggacgg ataaaaacac cggtgcacgc cgtgaagtaa ccgagtggca
     7321 tcgtattgta ttctaccgcc gtcaagcaga agtatgcggg caatatttac gtaaaggctc
     7381 tcaagtttac gtagaaggac gtttaaaaac ccgtaaatgg caagaccaaa acgggcaaga
     7441 tcgttacacc accgaaattc aaggcgatgt gctacaaatg ctcggcagcc gtcaaggtaa
     7501 tgatatgggc ggtcagcaag gcggttgggg aaattctgct cctgcgggta atagctacaa
     7561 tcaaggcaac agcaattatg gttacaacca aacccaaagt gctgcaccgc aatctaaacc
     7621 ggcaccacag cctgagccgg caatgaacaa ttttgatgat gatattccgt tctaatcaaa
     7681 gtattgactt aagtagctca tgggttccat acaccgcatt tcgatgaaat aaaaagctac
     7741 tcatataaag cgcccctacc ttactcaaaa taatagggaa cacttccaag taataagtgt
     7801 tccctattaa ttaatataat taataaatcc actt
//
LOCUS       DANMGB010000112         7710 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.112, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000112 DANMGB010000000
VERSION     DANMGB010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7710
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.112"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1418
                     /gene="hldE"
                     /locus_tag="PXG19_001800"
     CDS             <1..1418
                     /gene="hldE"
                     /locus_tag="PXG19_001800"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL6067079.1"
                     /translation="YSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKVQDIE
                     ERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSHPTIT
                     KLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLESVQQM
                     IQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGLKLIA
                     DYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIADGRA
                     YEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVEEAKK
                     RGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPINDLAA
                     RMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWANGGDV
                     RVLNFENGCSTTNVIKKIQAL"
     gene            1432..1986
                     /gene="pyrR"
                     /locus_tag="PXG19_001801"
     CDS             1432..1986
                     /gene="pyrR"
                     /locus_tag="PXG19_001801"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL6067080.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            2059..3009
                     /locus_tag="PXG19_001802"
     CDS             2059..3009
                     /locus_tag="PXG19_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6067081.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            3071..3937
                     /gene="rsmA"
                     /locus_tag="PXG19_001803"
     CDS             3071..3937
                     /gene="rsmA"
                     /locus_tag="PXG19_001803"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL6067082.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(4048..4677)
                     /gene="upp"
                     /locus_tag="PXG19_001804"
     CDS             complement(4048..4677)
                     /gene="upp"
                     /locus_tag="PXG19_001804"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL6067083.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(4702..6387)
                     /gene="fadD"
                     /locus_tag="PXG19_001805"
     CDS             complement(4702..6387)
                     /gene="fadD"
                     /locus_tag="PXG19_001805"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL6067084.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(6365..6829)
                     /locus_tag="PXG19_001806"
     CDS             complement(6365..6829)
                     /locus_tag="PXG19_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL6067085.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(6826..>7710)
                     /locus_tag="PXG19_001807"
     CDS             complement(6826..>7710)
                     /locus_tag="PXG19_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL6067086.1"
                     /translation="YLTAMSEAHKKSTYELVYILQQGSDTESFRLRHAFTHNKEYAQL
                     LNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYANLKGYAFLDAG
                     KDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQ
                     SPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVE
                     SEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVIIGDVPL
                     QSAKQIMNNIGFKEGAQP"
BASE COUNT         2271 a         1673 c         1522 g         2244 t
ORIGIN      
        1 aatactctcc aaaatttaat aatgctaaag tgctggtgct tggcgatgta atgttagacc
       61 gttactggtt cggggcaacc aatcgaattt cgcctgaagc ccctgtgccg gtggtgaaag
      121 tacaagatat tgaagagcgt gccggcggtg cggcaaacgt ggcgatgaac atcgccagcc
      181 ttggcgtacc ggtaacatta cacggcttaa ttggcgatga tgatgccggg cgtgctttag
      241 ataaattact taattcccac cagatccaaa atcattgtgt ggtgattaat tcgcacccaa
      301 ccatcacaaa attgcggatt ctttcccgcc atcagcaatt attgcggttg gattttgaag
      361 agggttttca caatgtagat tctaccgccc tacttgcaaa actttcgcaa gaaattaccg
      421 cttacggagc attaattctc tcggattacg gcaaaggcac attggaatcg gtgcaacaaa
      481 tgatccaaat tgcccgcaat gctaaggtgc cggtgctgat cgacccgaaa ggcacagact
      541 ttgaacgcta tcgtggggca acattgctta caccaaatat gtcggaattt gaagcggtgg
      601 ttgggcattg taaagatgag gatgagattg tcagcaaagg gttaaaactg attgccgact
      661 atgatttatc tgcactatta gttacccgtt cggaaaaagg aatgacctta cttcgcccga
      721 accacgagcc ttatcatctg ccgacccaag ccaaagaggt ttatgatgta accggtgcag
      781 gcgataccgt aatcagtgta ttagccactg cgattgccga tggcagagcc tatgaagaag
      841 cctgctattt agccaatgct gccgccggtg tagtcgtagg taaattaggg acttcaaccg
      901 tcagcccggt tgagctggaa aatgcgattc accaacgcac tgccaccggt tttggcgtgg
      961 tttctgaagc cgaattaaaa gcgattgtgg aagaagcgaa aaaacgtggc gaaaaaatcg
     1021 tgatgacgaa cggttgcttt gatattcttc accccggtca cgtttcctat ttggaaaacg
     1081 cccgtaaatt aggcgaccga ttaattgtag ccgtcaatac cgatgcttcg gtaaaacgcc
     1141 taaaaggcga agctcgcccg attaatgatt tagctgcccg tatggcagtt ttagctggtt
     1201 tagcctctgt agattgggtt gtgccttttg atgaagatac accacaacgt ttaatcagtg
     1261 aaatcctacc tgatttattg gtaaaaggtg gtgattacaa gccggaagag attgccggca
     1321 gccaagaagt atgggcaaac ggcggcgatg tgcgagtatt gaactttgaa aacggctgtt
     1381 ctaccactaa tgtgatcaag aaaattcaag cactataatg gtaataagcg aatggcgaga
     1441 gaaaaaatca ttattgatac cgagcaattt cagcgcacaa tatctcgtat ttcacatcaa
     1501 attattgaaa aacacggtga tttgcaagat gtagtgattg tcggcatcaa acgtcgagga
     1561 gctgaaattg ccgagttaat ccaaaaacgc attgaagatt tagctcaaac acgcttgcct
     1621 tatatggcgt tagatattac gttctaccgt gatgacctag acttaattta tcaagatccc
     1681 gtatttatgg gagccgataa tcagctaaat ctgaacggta aaaaagtgat tttggttgat
     1741 gatgttctgt ttaccggcag aaccattcgg gcggcacttg atgcactctt agattttggc
     1801 agagctgcca gaattgaact ggtgattttt gtcgatagag gtcatcggga attgcctatc
     1861 cgagccgatt atgtcggaaa aaatattcca acggctaaaa acgagcaaat tcaggtgcaa
     1921 acgctctcgt atgatgggat taaccaagtg gtcttagttc ctgctgccaa taaagaaagt
     1981 gcttaaatta agtgaacctt ttcgctaaac ttatctctaa ggaaaagtta ctgcttaatt
     2041 acctccatta ggattgttat aaaaatgaaa ttagtcaaat cattatttgc tgttgccgtt
     2101 gcaacaatga gtcttaccca aaccgcccac gcatttgaag aaagagtggt ggcgttagtg
     2161 aatgataccc ctattatgca aagccaggtt caacgtgtgc ttggcaagaa aaaggcgaca
     2221 gaaactgctc aacgtgcggc tattgatcaa gtgattgatg atatgttggt gcaacaggca
     2281 atgaaagaag ccggcgttaa agtcagccca gctgcggtaa accaagcggt tgaaaatgta
     2341 gcaattcaaa acggcattac ttacggtcag ttattagatg cgttagatta tcaaggtatt
     2401 acacttgaac aattcaaacg taatattgct caacaaatgg caatggaaca agttcgccat
     2461 atcagcatta gcaaatcgat tcaggttgca ccacagcaag tgcaagctct ggcgaaagag
     2521 ttaatggcga aagataaagc agcaggcaaa ttgaaaaccg tttctggcaa agagcatcgc
     2581 attagtcata ttttgctcaa aaccaacccg attttaaatg atgctcaagc caaagcaaaa
     2641 cttagcagct taactactga tattaactca ggcaaaatca gctttgaaga agcggcaaaa
     2701 acccattctg ttgattatgc ctcaggggca gacggtggag atttaggttt taacttctta
     2761 gaaatttacg atccggcatt tgcgaatgtt gcatcaaaaa tcaaaccaaa ccaaatttct
     2821 gctccgttta aatcgcaatt tggttggcat attttaaaag tcaccgacac tcgtaacgga
     2881 gacagaaccg aagatgctta ccaccaacgt gcttatcagc aactggtgaa caagcaagcc
     2941 gaagaagcct ctaaagattg ggtaaaagcg cttagaaaaa ccgccaatat tcaatatgtc
     3001 ggtcaataat taaaattttt aagaacctcg cataatgcgg ggttcttttc ttatttcaaa
     3061 aaggataaca atgagttcta caaattccaa aaaacattta ggtcataccg ctcgtaagcg
     3121 tttcgggcaa aactttttgc acgatatgaa cattattcac agcatagttt cagccattaa
     3181 cccgaaaaac ggacaatttt tattagaaat cggtccgggt ttaggagcat taaccgagcc
     3241 ggttgccgaa ttggtagata aactcacggt ggttgaaatt gaccgtgatt tagcagagcg
     3301 tttacgccac cacccgtttt taaaccaaaa actcaccatt attgagcaag atgccctacg
     3361 ctttaatttc cgtgactatt ttaaccaact caacttagac gaagactcgg tgcgtgtgtt
     3421 tggtaactta ccttacaaca tttctacgcc cttgatattc cacctgctga cctttcacga
     3481 cttaattcaa gatatgcact ttatgttgca aaaagaggtg gtgaaacgtt tatgtgccgc
     3541 gccaaacagt aaagcatacg ggcgtttaac cattatggct caatactatt gccaagtaat
     3601 tccggtgctg gaagtgccgc caaccgcctt taaaccggca ccaaaagtcg attctgcggt
     3661 agtgcgttta gtgccttata accaactgcc ttatccggca aaagatgtgt attggctcaa
     3721 tcgggtcacg actcaagcct ttaaccaacg ccgtaaaacc ttacgcaatg ctctttcaac
     3781 cctgtttagt gcggagcaac tggacgcctt aggcgttgat ttaaccgccc gagcggaaaa
     3841 ccttaccatt gccgattatg tgcgtttggc taactggcta cacgacaacc cgccggcaat
     3901 tgatacaacc gaagaattgg ttgatgaaga ttgctaatca ataaattaca agcggtcatt
     3961 tttctaccaa gatttgcaaa tctttagtga aaaatggccg cttgtttaaa tcagctttac
     4021 ttgttttgct gttacttagt tttgatgtta cttggtgccg aaaattttat cccctgcatc
     4081 gcctaagcct ggaatgatat agccgttttc gtttaagtga ctatcgattg aggcggtgta
     4141 gagttcaaca tctgggtggg cggcttctaa tactttaatc ccctctggag cggcaactaa
     4201 cactagcact ttaatctgct tacagcctgc ttttttcagg aggtcaatgg ttgctaccat
     4261 tgagccaccg gttgcaagca ttgggtcggt gataatggct aaacgctcat caacatcgtt
     4321 ggctagtttg gagaaatacg gcacgggctt taaggtttct tcgtcacgat aaatcccaac
     4381 cacactaatt ctggcacttg gaatatgctc taacacaccg tccatcatac ctaagccagc
     4441 acgcagaatc ggcacaacag tcactttttt gcctttaatt cgctcaaccg caattttctc
     4501 tccgctccag ccattgatct ccacactttc catttccaga tctttggttg cttcgtaagt
     4561 aagcagacta ccaatttcat tcgctagctc acggaaatct ttggtgctga tttccgcttc
     4621 acgcattaag cccaatttat gctttacaag tgggtgtttt acttcaacaa ttttcatttt
     4681 aagctcctta attagtgtaa tttaagcctt attcaccttt gctaattctt cgtctcttaa
     4741 cactcggcga agaattttgc cgacattact ttttggtaat tcgtcacgga attcgatgtc
     4801 tcttggaatt ttgtagccgg ttaagaattg acgacaatag gttctcaatt catctcgagt
     4861 taaactttca tcttttttgg ttacaaaaat tttaatgctt tcgccggaag cctcactcgg
     4921 cacaccaatc gccactactt cattcacttt tgggttttgg gaaatcactt cttcaatttc
     4981 ggttgggtac acattaaaac cggagacaat aatcatatct tttttacgat caacaatgcg
     5041 taagttcaga tcatccccca ttaccacaat gtcaccggtt gccatccaac catcttgtag
     5101 cacttgtgcc gtttcatcag gacggttcca atagccttgc attacttgcg gccctttcac
     5161 caccagctcg ccccgttcgc cgagtggtac ttctttgcct tcatcatcca caatacgaat
     5221 gtcagtattt ggcactggca cgccaataga gccggaatat tccaccgaat cgccacgggt
     5281 tgcactaatc agcggagaac attctgtcat tccataacct tcgataatat gtacgccggt
     5341 taaatcgtgc cagcgttttg ccacgctaga ttggatcgct gcaccgccac ctacacttaa
     5401 ttttaggtgt gaaaaatcaa cctctttaaa actttcgtga ttaagtaatg cattaaacaa
     5461 tgtatttacc ccagtaatca ctgaaacttt gtactttttt aattctttaa taaagcctgg
     5521 aatatcgcgc ggattagtaa ttaataatcc ggtaagtcct aattcgataa agagcaagca
     5581 attcatcgaa agtgctaaga cgtgatacag cggtaaaggt accaatccaa tcatattggc
     5641 agaattaccc aacaatggct caacaatcca ttttgcctgc atcatattag caattaagtt
     5701 ttgatgagtc agcattgccc ctttcgctac acctgtagta ccgccagtgt attgtaaaaa
     5761 ggcgagatct tggctgacaa tattcggttt tacatattga cgctgtttgc caatgcttaa
     5821 ggcttcacgg aagctgaccg catgtggcaa tttatatttc ggcactaatt ttttgatgta
     5881 tttcaccaca aaattgacta aggtgcgttt gccgaatgaa agttggtcgc ccattcgggt
     5941 caaaataacg tgcttaatct cagtattaaa gacaattttt tctaaggtag ccgcgaagtt
     6001 cgagactatc acaatcgctt tcgcaccact gtcatttaat tgatgttcta attcacgcgg
     6061 cgtataaagc gggttgacat tcaccaccac aagcccggca cgtaatgcgc caaataaagc
     6121 gatcggatat tgcaataaat tcggcatcat caatgcgatt cgatcacctt ttttcaggcg
     6181 taattcattt tgcaaataag cggcaaacga gcggctacgt tcttccaatt tacggaacgt
     6241 taaaacctgc cccatattaa tataagctgg aatatcaggg tggcgttgta tcgctgcttc
     6301 aaacatttcc actaaagatt catattgatc tgtttcaatc gtttttggtg aataaggcgg
     6361 ataattattt agccatattt tttccattat agtctcctaa aaccttacct aaaaagatag
     6421 gtgaaaaatt tgcttgtttg ctgtgtttat gaatcaattt tcttacagcc cagaatgtta
     6481 tacctgttga aagcaacatt ataaataaaa caataagctc atttgcaaaa aattgcgaaa
     6541 atccgaccgc tgtcatcaca agaaccagca gaggaatgcc ataaattaaa aacacgcttt
     6601 tgagcaagat attttcagct aaccctagtt caaccttatc gcctactttt aggggttcat
     6661 ctacctcaat acgaaaacga gggtcaattt tttcacctgc taatgctgat aatgctttgc
     6721 tgccacaagc agactgagct acacagccac cacagctact tttagcataa cattgtacaa
     6781 tagccacacc attctgatat tccaccaccg tagcctgttc gatcatcatg gctgagctcc
     6841 ttccttaaaa ccaatattgt tcataatttg cttagccgat tgcaacggca catcaccaat
     6901 aatcacaata tctctatcat taatcgtttg atttaaaatc gttaatttac cttgttgcca
     6961 agcgtactca ttaaaactca cgccttggct aggcataata taaatagtta atgtagataa
     7021 accatcacta tatactctgc tatctacata ctcactttcc acttgatatg tcgcacctgt
     7081 gactgtttgt tgctgaatta acctaaaccc tgtcggcaac cacttcacct gccaaccatc
     7141 agacttagga aattcttctt ttttcactgt cgttaatgtt ggtaacatta gtgattctat
     7201 tacatttgca atcctatcca attctggaga ttgataaagt tgcaaaactc tgaattcttc
     7261 taataccaaa ttatccatat tcaagacttg gcttttaagt aataaatgtg tttcttcatc
     7321 aatccatagt atataggcat atcttaaagt atcatttggc ttcatacgaa ttacctttgt
     7381 aattcggtca gaaatacgat ctttaccagc atctaaaaag gcataacctt ttaaatttgc
     7441 ataatctgtg taaagtacat tagggaggtt atctaaaatc tgtgaactat ttaaactaaa
     7501 aggacgaaaa ttatacccca aatagctgac cttgttattt tttaaaataa tttcttctcg
     7561 gctgtgatct aaattcagta attgggcata ttctttatta tgggtaaaag catgacgtaa
     7621 acggaaagat tctgtatcac ttccctgttg aagaatataa actaattcat aagtggattt
     7681 tttatgtgct tctgacatag ccgttaaata
//
LOCUS       DANMGB010000113         7679 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.113, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000113 DANMGB010000000
VERSION     DANMGB010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7679
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.113"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            23..634
                     /locus_tag="PXG19_001808"
     CDS             23..634
                     /locus_tag="PXG19_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL6067087.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(688..1986)
                     /gene="aroA"
                     /locus_tag="PXG19_001809"
     CDS             complement(688..1986)
                     /gene="aroA"
                     /locus_tag="PXG19_001809"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL6067088.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(2032..3126)
                     /locus_tag="PXG19_001810"
     CDS             complement(2032..3126)
                     /locus_tag="PXG19_001810"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6067089.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            3398..4717
                     /locus_tag="PXG19_001811"
     CDS             3398..4717
                     /locus_tag="PXG19_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL6067090.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(4887..6830)
                     /gene="ftsH"
                     /locus_tag="PXG19_001812"
     CDS             complement(4887..6830)
                     /gene="ftsH"
                     /locus_tag="PXG19_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL6067091.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(6951..7577)
                     /gene="rlmE"
                     /locus_tag="PXG19_001813"
     CDS             complement(6951..7577)
                     /gene="rlmE"
                     /locus_tag="PXG19_001813"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL6067092.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2143 a         1718 c         1460 g         2358 t
ORIGIN      
        1 tcctagcttt agaggaatat atatgaagaa attatcatca gctcttctgt cttgtttttt
       61 actcggccta tctagccctg ctttaacggc agacacttac attactgaaa atctgagtac
      121 atttatgcgc aaaggtgctg gtgatcaatt ccgcatttca ggcgctattc aagcaggtga
      181 aaaagtcaca gtattagatc gtaaagagcg ctacagtctg attcgagata gtcgtaaccg
      241 tgaaggttgg gtacttaatt cagacttaag cgatactgct agtccaaaag agctgattcc
      301 tcaattaaaa caacaggttc aagatttaac caatcgcctg agcaaaatcg ataccgaatg
      361 gcaacaacgt accgcagaaa tgcaacgtag aacgcaagat tcagtgcaga aaagcagtga
      421 tttggttgag gaaaatgcac aactaaaacg tgaactggaa atcctgaaaa acaaaaatcg
      481 tgatttagaa acaatgcacg attccgagaa acgtgaaatc gtgattcagt ggttcatcta
      541 tggtggtgct gtgttaggcg caggtttact acttgggtta ctcgtgcctt tcctgatccc
      601 tcgccgcaga cgtaacaaca gcggttgggc ttagtctgcc acaataaaac gtaaaaagga
      661 ttcagttttc tgaatccttt tttactttta tctgaccgat aatttttcca actccctaaa
      721 gtaagtcggg aacgttttag cggtacaatt tggatctaag atcgtcactt ctgtattcga
      781 taacgcaatt aatgaaaaac acattgccat acggtgatcg ttataggttt caatttcagc
      841 gtgctggaag ttttctaacg caagcggttg aatccgaata aaatcttccc cttcttctac
      901 ctctgccccg actttacgca attcggttgc cattgctgtc aagcggtcgg tttcttttac
      961 ccgccagtta taaatattgc ggataactgt ttctccttcg gcaaataaag cggttgttgc
     1021 aatcgtcatt gccgcatcag gaatatgatt catatccata tctacgcctt ttagcgggga
     1081 ttgctcggct tgaataaaat cctctcccca agtgattttt gcccccattt tttccaacac
     1141 atcggcaaac aagcggtcgc cttggatcga ttttttacca atgcccgtta cttttacctt
     1201 gcctttaatc gcaccggagg ctaagaaata agaggcagaa gaggcatctc cctccaccaa
     1261 ataattacct tgtggagcaa catagccttg tttaccttta actaaaaagg ttttgtaatc
     1321 tcgattttca accgtaatac caaaatcgtt catcatcgaa agggtaatat caatataagg
     1381 ttttgatacc agatcaccga taatctcaat ttccatatcg ccttccgcta atggggcaga
     1441 catcagcaat gcggttagaa attggctgga aatcgagccg tcaatttgca cttttccgcc
     1501 ctgcaaaccg ctattgctaa ttgccaacgg tggatagcct tcattttcta aatactgtac
     1561 ctctgcccct acttggcgta aagcatcgac taagtgttta atcgggcgtt ctttcattct
     1621 tggttcaccg gtaagaatga tttgggattt ttcctcacct tttaaacaca atgctgctgc
     1681 aagtggtcgc attgccgtgc ctgcattgcc gagaaacagt gataagccgt tttgaacctt
     1741 aaaagctcca ccaatccctt caactacaca gacggtttta tcgtccgata gctcatattt
     1801 cacgcctaac gcttttaagg cattgagcat atgtcgaata tcatcactat ctaataaatt
     1861 ggtcacttga gtcgtaccgg tggctaaggc ggctaataat aaggctcggt tagacaggct
     1921 tttagaacca ggtaaattga tctcgccttc tactcgggaa atcggggtta aagttagttt
     1981 ttccattttt ctctttaaat ttgtaaaatt ttcataaaag gtaaccgctt gttaagctaa
     2041 cactttcaat aaggcagtaa aaaatctctc gttttcttgc ggtaaaccga tactaatgcg
     2101 taaatgattc ggcattccat aacctgctat cgagcgaaca atcacgcctt cacgcagtaa
     2161 tgcctcataa atcggagcgg caggacgttt gaaatcaata gtaataaaat tgcccttaga
     2221 agggatatat tccaagccgt ttgcttggca gaaagcctca tagcgagcca tttccaagcg
     2281 gttattttct gccacttttt tgacaaattc atcatcattc attaccgcaa tcgctgaagc
     2341 taaggcaaga ctattgcagt taaacggctg gcgaacacga tttaataaat ccgcaatttc
     2401 agggtttgaa accgcataac caatccgaag cccggctaag ccgtaagcct tagagagtga
     2461 acgtgacaca attaaattcg ggtattttgc caataagcca aacgaatcca cccgttcttg
     2521 aggcgcagta aactcggtat aagcttcgtc cagcaccacg attacatttg ccggcacttt
     2581 agctaaaaag ccctcaattt ccgcttgggt taaaaaatta ccggtcggat tattcgggtt
     2641 ggcaataaaa attaatttag ttttttcggt aattgcagcc aaaaaggcat ctaaattgtg
     2701 tccccaattt ttagccagaa tttcacgggc aacggcatta atcgctttcg tcaccaacgg
     2761 atacacaata aacgcatact gagaatagat aatttcatct tgctcaccgg cgaaggtgtg
     2821 ggcaaacagc tctaataaat cgtttgagcc attgcctaag gtgatttgat tggcttgtac
     2881 gccaaatttt tgggcaatag tggtttttaa ttcaaagccg tttgaatccg gatagcgggt
     2941 taaatcgtca agctgattca gaatcgcctt ttttgcactt tcaggaaaac caaatgggtt
     3001 ttcgttcgag gctaatttaa tgatattttg aatccctaat tcacgctcta gctcctcaat
     3061 cggctttcct gcttggtaag gcgaaaggga tttcacgccc tcatttgcga tgttgataaa
     3121 ttgcataata acctctgatt attcttataa aatataagtt cggattgtag taaagaatga
     3181 ttgcctttac cagtaaattt tttgttacaa ctggaaagaa attggtacaa acattcggat
     3241 tagctttgca aaaagcgtaa aaaatcttac cgcttgtcat ttatcagtta gggaaaataa
     3301 aaaatcactc tcttatataa aaacaattac gcaaacgatt gcttattaaa aaaacttcag
     3361 tataatgccg acatttttta actctcgagg aatcactatg aaccatttac tttattctgt
     3421 cgaagacaaa ccgcctttcg ggctgagctt attgcttgcc tcacaacatt tattagccgc
     3481 tttaggtggc attatcgctg tacctttagt gctagggaat gtactcaaac tctctactgc
     3541 ggatactata atcttagtta atgctgcact tttaatttca ggcatcgtca ctattattca
     3601 atgtcgaggt attggcccaa tcgggattag actaccgagt gtaatgggaa ctagctttac
     3661 gtttgttgca gcagcattag cgattggttt cagtgaaagt ggcattgccg gcattatggg
     3721 agcctcttta gttggctctc tagtgatgat tatcggcagt ttttttatgc cttatatccg
     3781 taagcttttt ccacccgtgg taacaggtac tgtcataatg atgattggcc taagtttaat
     3841 tcctgttgca gtagactggt ttgctggtgg tcagcgtact gatccacact atgcaacccc
     3901 agaaaatctt ataatggcta gttttgtatt aattattgtc gttgctttag tacaatgggg
     3961 gaaaggtatt ttttcagctg ctgctattgt gattggtatg atgataggtt atatcgtttc
     4021 gctagctctg ggttgggtaa gttttaatgg cgtgaaagaa gcacaacttt ttgcgttacc
     4081 acaacctcta cattttggct tagaatttcc aatctccggt atcatcggaa tgtcaattgc
     4141 ttatttagtt accattgtag aatctagcgg aaatttctta gcactaggca atgcaactaa
     4201 aactgaaatt accggaaaac acttacgtgg aggtgtatta tgtgatggtt taggctcagc
     4261 atttgcggca attatgtcca caactccctt ttcttctttc tcacaaaata ttggggtcat
     4321 ttcattaacc ggtgtagcca gtcgctatgt tgtagcattt acaggcgcat tacttgtact
     4381 agccggttta tttcctgtat ttggagcatt aatcgtgtct atcccgttac ctgtgcttgg
     4441 cggtgcaggc ttaatgatgt ttgccatgat tatcgcagcc ggtatccaaa tgttagataa
     4501 tattcaacgt agcaaacgaa acggtttaat tattgctatc tctatcggtt gtgggctggc
     4561 cgtaacaact cgacctgagc tattggataa gcttccacac ttctttaaag aagtttttgg
     4621 ctcaggtatt acggtcggct ccttattagc acttattttg aatttagttt tacctgaaga
     4681 taaaataacc aagaaagaaa ataagagtga tgaataaatc accctaaaaa aacaaggaca
     4741 gctcacaata caactttgat gctgtccttt attcccatag agagcatatt taaatttagg
     4801 ttaataaaaa aatctgcact ctatattggt gtttaccttt agagtacaga tttcttctta
     4861 ttctaacttt ctagcaaaca attagattaa tgttccgctt tggtatcggc taacgaatcc
     4921 ccaatgttat tatctttatt tggattatcc tctaaagttg aacttacatc cgctgcctgt
     4981 tcaccacttg gtggagtggc gttatcgtct ttagttgggg tatctgtcca acctgatggt
     5041 tcacccaccg gacggcgtgc cattaaatca tcaatttgct tgctgtctaa ggtttcgtat
     5101 ttcaataagg catctttcat tgcgtgtaag atgtccatat tttcttccaa agtttgcttc
     5161 gctcgttgat agttgcggtc aatgatctta cgcatttcca catcaatcaa tttttgcgac
     5221 tcttccgata cgcccttaat tgcacccatt ccatcttcat tttgatagaa aatcgggcct
     5281 aattcttttg agaagcccca ttgagtaacc attgctcgtg caatttgggt tgctcgatga
     5341 atatcagagg aagcccctgt ggtaatttta tcttcaccaa aaatcaagcc ctcagcaatt
     5401 cgccctgcaa atagggtgga aagttggctt tccaatttgg taaatgtttc gcttacacgg
     5461 tcaccttccg gtaagaattg agcaaaacct aacgcctgac cacgaggcac aattgtcact
     5521 ttattcagcg gatcgtgttc cggcattaaa tagccaacaa taacgtgtcc agcttcgtgg
     5581 taagcagtat tgatgatctc tttttccgtc attgtatttg aacggcgttc cggccccata
     5641 ttgattttgt cacgggcttc ttcgaaatct tccatcatta ccacacgttt attcttacgg
     5701 gcagcaaata aggcagcttc gttcaccaag tttgctaatt gagcaccaga gtaacccggc
     5761 gtaccacgag caatttgcat cgggtcaact ccctctgcaa gcggtacttt tttcaagtga
     5821 actttcaaaa tttgctcacg ccctttcacg ttcggcaaat cgaccgtgac ttggcggtcg
     5881 aaacgccccg gacgagttaa ggcatcatct aacacatcgg cacggttggt tgcagcgatg
     5941 ataatcacac cttcagagcc ttcaaagccg tccatctcaa ctaacatttg gttgagggtt
     6001 tgttcacgct catcgtgtcc accgctgaaa cctgcaccac cacgtttacg ccctaccgca
     6061 tcaatttcat caataaaaat aatacaaggg gcatttttct tggcttggtc gaataaatca
     6121 cgcacccgtg aagcacccac acctacaaac atttccacga agtcggaacc tgccattgta
     6181 aagaatggca ctcgtgcttc acctgcaatc gctttcgcca ataaggtttt acccgtaccc
     6241 ggagggccta ccatcaagat cccttttgga atgcgcccac ctaatttttg aaatttagtt
     6301 gggtcacgca aaaactcaac aacttcgcct acttcttctt tggcttcatc acagccggct
     6361 acatcagaaa atctggtctt aacttcgtct gcggtcaaca ttttggcttt atttttccca
     6421 aagcccattg caccacgtcc tccgccacct tgcatttgtc gcatataaaa cacatagaaa
     6481 ccgattaaca gcaacattgg gaaccaagaa atcaaaattt gcgagagcaa gccacgacgc
     6541 tcagcaggct gaccggtaat cactgcattg gtttttgcta aatctgccat taagtactca
     6601 tcatacatcg gcattacggt ttggtaggtt gcaccatcat ttttcgtcac caaaatggtg
     6661 tcatcattct gtttgaaatc gacccctttt aaacgatttt ctttaatatc gcttaaaaaa
     6721 gtcgaatatg gcactgtatt tgagctacca ctgaaattag aattaaaacc ttcataggct
     6781 gtcatcatca caatggcaat caccacccaa agtaaaatat ttttaaccat atcgttcaag
     6841 gttaatcccc tatctgctga ataaaaaact gttcaagatt actataaaag cggtcgaatt
     6901 ttccaatttt tttgcaaaat gttaataaaa aatgaccgct tgcttgtttt ctagccttta
     6961 taacctgtcg ctacaatata aacttctcga gaccgatctc gagacgcctc cggttttctg
     7021 acttttacca cactaaagag cgagcggatt tctcgaaggt attcatcaaa tccttcgcct
     7081 tggaatacct taaccacaaa actgcctttg gttgctaata cttggcgaca catatccaat
     7141 gccaattcca ctaaatacat tgcacgagga atatcaaccg acggcatacc gctgaaattg
     7201 ggagccatat ccgacatcac cacattcact ttgtcttcgc ctactcgctc aagtaacgca
     7261 ttcagcaccg attcttcacg gaagtcgcct tgtaagaaat ccacgcctac aatcgggttc
     7321 atatctaaaa tatcacaagc gattactctg cccttactgc cgatttgcgt caccacatat
     7381 tgcgaccaac cgcccggtgc ggcaccgaga tccaccaccg tcattcccgg tttgaataaa
     7441 cggtcggttt gttgaatttc atctaactta aaatacgccc gtgaacgcaa tttttgttta
     7501 tgtgcttttt gcacaaattg atctttaaaa tgttctgcaa gccaacgtga tgaactcgca
     7561 cttcgttttc tacccatttg ttcttctatc ttaattaatt caacgattta taataagggt
     7621 taaattagca aattcaagag atgttctaaa atttagctcg gcttattatg cttaattaa
//
LOCUS       DANMGB010000114         7657 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.114, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000114 DANMGB010000000
VERSION     DANMGB010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7657
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.114"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            14..700
                     /locus_tag="PXG19_001814"
     CDS             14..700
                     /locus_tag="PXG19_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067093.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            704..1222
                     /locus_tag="PXG19_001815"
     CDS             704..1222
                     /locus_tag="PXG19_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067094.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1240..1650
                     /locus_tag="PXG19_001816"
     CDS             1240..1650
                     /locus_tag="PXG19_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067095.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
     gene            1750..2010
                     /locus_tag="PXG19_001817"
     CDS             1750..2010
                     /locus_tag="PXG19_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL6067096.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            2042..2851
                     /locus_tag="PXG19_001818"
     CDS             2042..2851
                     /locus_tag="PXG19_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6067097.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKK
                     TAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWD
                     KLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR"
     gene            complement(3034..4272)
                     /locus_tag="PXG19_001819"
     CDS             complement(3034..4272)
                     /locus_tag="PXG19_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL6067098.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(4272..4709)
                     /locus_tag="PXG19_001820"
     CDS             complement(4272..4709)
                     /locus_tag="PXG19_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067099.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            complement(4711..5058)
                     /locus_tag="PXG19_001821"
     CDS             complement(4711..5058)
                     /locus_tag="PXG19_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067100.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            complement(5122..5238)
                     /locus_tag="PXG19_001822"
     CDS             complement(5122..5238)
                     /locus_tag="PXG19_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6067101.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            complement(5262..5576)
                     /locus_tag="PXG19_001823"
     CDS             complement(5262..5576)
                     /locus_tag="PXG19_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6067102.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            complement(5655..6161)
                     /locus_tag="PXG19_001824"
     CDS             complement(5655..6161)
                     /locus_tag="PXG19_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6067103.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            complement(6170..7351)
                     /locus_tag="PXG19_001825"
     CDS             complement(6170..7351)
                     /locus_tag="PXG19_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL6067104.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTILEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            complement(7458..7604)
                     /locus_tag="PXG19_001826"
     CDS             complement(7458..7604)
                     /locus_tag="PXG19_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067105.1"
                     /translation="MLAEKPKKRWRFWYAFVNGLFFDKKHCYAAYKAEVYRKQYPPEF
                     TEIT"
BASE COUNT         2235 a         1559 c         1573 g         2290 t
ORIGIN      
        1 taaggagttc ctaatggata ctttggcaag tcgtttgaaa atcgttttag accaaaaagg
       61 tttaacacag gaaaaatttg cagaacaaat aggtgtttca cagccatctg tttttaaaat
      121 cctgaatgga caaactcgaa atcccacaag gatttatgaa attgcaaacg tcctagatgt
      181 cgatgtaaat tggctcaaaa ccggcaaagg cgaagcacca gattttgcga aaatcggaaa
      241 aaatccgacc gcttatgaag aggaaagctc aatgcttcga cttgaggtgt tagatgtata
      301 tgcctctgcc ggcaatggta gttttgtcac gggagactta accgcttaca cgcacgcagt
      361 agaatttgaa aatgcctatt ttgcacaagt ctttcaacgt gcaaatgcca aaggcttatc
      421 aattattaat gtagatggcg actcaatgga gccaactatc ggtaacggtg atttgctgtt
      481 cgtagatacc actaaatccg cttatcaagg cgatggtgtc tatgttttca gctatggcga
      541 aaacttatat gtaaaacgct tgcagttcgc cggtgatgaa ttgttagtca tttccgacaa
      601 tccgctttat aaagagtgga gaatcacatc agaaaatgag cataaattcc aaattcacgg
      661 taaagtggaa tttatgcaag ggcatattag gagggtttag gtgatggaac atcaaaatct
      721 aactcatctt gtctatatta catcacataa acaaattgga gtttattcga tttctaattt
      781 gaatattgat gacctttact tcaaaggtta ctgtattcag aaaaatagag ttatcacatt
      841 aagagctgat cgcattatta aacaatttga tgatttagct cttgccgaaa attatgccaa
      901 aaatattcct caagatgtgt tttatctatt tgattctctt ctgaaccagc aacgaaaaga
      961 aaaaataaca ccgatctata aaatcggttt gtgttttact ggatttaagc aagctagaaa
     1021 aaatgaatta attcaactag cagtagataa tgatttgaga gtagtacaaa acgtaactgg
     1081 tgcagttgat tttttaattt tcgataaaga gtcgaaaact gttggaccag caaaactagc
     1141 aaaagctgaa aagttaggaa ttaaaatcat cgatgatgaa gaatttttat atatgttaga
     1201 aactggcgtt gtgccggatt aggtttgact tctcaataga tgtttatacc aaaatcatct
     1261 aaactaaaaa ctaacaatta catagaagaa ttaaacatca aatcaatagg ggaaaccgat
     1321 atgaaaaaag cacttacact acttgcacta tcactatttg cattgcctgt acaagccgat
     1381 agcctcgaac ttgctcgtaa taaagtaaag caaattttta tcagtgatga agagccaaag
     1441 gtaaaagatg cgacttggac tgcaccattt atctttaagg ttggagtttt tgatgacggc
     1501 acgaaaagag atggctacgc cgaatatgtt tgccaagttt tatacgacca cggatttaaa
     1561 ggtaaaggtg tgttggttag cgtaatcgat ataaaaaaac tagtccaaac aggtgattgg
     1621 gttgatcttg gcaaagctaa atgtcagtaa tacataaggg acagattatt ctgtctcttt
     1681 gtatttaatc attaatgaag aaaccttttt actacacagt taatactata ttttataatg
     1741 gggttcataa tgaaaaaatt agtcctctcg attttatttg ttatttcgcc tatggctttg
     1801 gcttatagct gcaatgaccc tatcccttac tgcaaagaaa tgcaatcttg cgagcaagca
     1861 aagttttatt taaatcaatg caatgccggt cgattagata gagataacga tggcatacct
     1921 tgtgaaaatg tttgtggcaa gaaaggaaag tccgagaaaa aagacgataa gaaatcagat
     1981 aaatcaaaat ctaaaaaaac ttcaaattag agacaggcgt tgtgcctgat taaaaggggt
     2041 aatgatgaat aaccagtcag tttggcactt attttgcgat gaatccggta taagcggtaa
     2101 gcctttttat gctttcggtg cattatggat aagagaagat aaaattagct tatttgaaaa
     2161 agaaatacag aaattacgag aaaagcacta ttgcactgat gaaataaaat ggcaaggtac
     2221 aaattctaaa cgctttagtg aattttatcg tgaattggtt agttttttct ttcaggctga
     2281 ttatttattt tttaactgta ttgtagttca acaagctatt gtcaataaag cttttcataa
     2341 cggtgattat gaaatggcaa aacagaagca ttttaattta ttgatttgca acaaaattga
     2401 acaatcctta tataaaaaca gaataaatag gtttgtttta tctgttgatg atctaccttt
     2461 taaatacaat aaagctgatg aggcaatgca cattatcgct aataatataa ttcgtaaaaa
     2521 gactgccgta gcaaatgcta ttctagcatt aaacgaagta gattctcgta aatcatctgg
     2581 cgttcaacta tgcgatttat tattaggagc aatattaagt agctatcaaa atgatattac
     2641 atcggaacgt aaaaaagaac taacaaaatg gattgctttg cacctaggtt gggataaatt
     2701 aacttatgat actttacagg aggaaaagaa atttaatatt tggtattttt acgaccctac
     2761 aaaaggacct agaatagtaa gaacgagaga aacaaaactt aaatacccac tattaaaaaa
     2821 gaaagagcag accttccagc ctgcacggtg agtgtcctca aggacttata tgtgtaaaac
     2881 aacgcccaat ttcctcactg ggcggaatca cacaaagtag ccgcccctat gattctttgt
     2941 gttttatgta aataaatctg taactttgat taatattact tgttcaagat cagagatgca
     3001 aggctttttt atagtgattt tataaaaata gcgttagtct tcagacttcg gcttcaactc
     3061 catctctaac gctgtcgtaa acccaccacc tttatttaaa ctgtgcgtaa cctgcgaaat
     3121 tatccactcg ttgctatcaa tctccgcctt aaagcctgaa acctgaaccg gtaattcggg
     3181 gataagctcc gcattgccct cggcaagagt taggctaaaa gttgccacac ctcgttgtag
     3241 tttttcaaaa ttccgtttac aagcattaat cgctgattgt gcggtagcgt aagtatgggg
     3301 tagggtttta attgcctcgc tatcactttc aatcggttta ctttgcacca ctgcattaac
     3361 ttgcctgcct ttgcctttta caaagacggt ctctttaatg ctcttgccgt ctttgccttt
     3421 tatcggcttg ccgtctgccc cacgttttac tttagtcttt ttccgcattg tgggcttagt
     3481 cactttttta acttggctgt tttcgtccca cgtcacctcg cctcgcttgc cggtttgcgt
     3541 gttgtgccaa taggctttaa ccgctttgta gttatcccct tcggcaatcg aaaagctatg
     3601 ggaatccccc gaactgcggg taatgcgaaa caggggtaac agtttaccgc ttgcggttgt
     3661 ggcgtttccg gctttaatga aaatcaaatt gccgtttttc acggtagcaa tggcatcaaa
     3721 ttgttctgcg aggcgttgca agagattaat agagctttcg tttgtttggt caatgtgttt
     3781 cacctcttcg ttttcaaact ccttgcccac catcggcttg agtttgttct cttcggcgat
     3841 ctgtttcaca attttaccaa tggtggtgcg gtgaaagctc cgctcgtggc gattggtcag
     3901 cgtgcctcgc aaatcagcac ttcttgcccg aatcgtgact ttatcaggtg ggccatcgtg
     3961 ggttagctcg tccaccgtgt attcgccctt gtaggtcagg gggctgtttt gccagcctaa
     4021 cccgaccgat aaaatcgctc ctcgacttgg caaagcgagt aagccatcag tgtcgtccag
     4081 ctctaaatcc agctggtctg cctcaaagcc tcggttgtcg gttaaggtga gttgaattaa
     4141 gcggtgcgtg atcagggtgg aaatatcttt ggctttttcg ccctcattat ctttgcttgg
     4201 ctttgggcga accgtcaccg aaacagccgg tgtgcggtgg ttatgattgg ttagctctgt
     4261 taaaaaatcc attaaataaa ccctgcgacc tcatcaataa tattggcgag cagactatca
     4321 tcaacccgtt taagcgacat cgaaaagcta attgcccggg gcgtgccgtc tgcaaaaaag
     4381 gtggtttcct gctcgctgat tcgatcaatc acaaaccagc ctagcaccat aaaggttgaa
     4441 ccactaatca acggataagc cgagccttgc tctgccatca tctcaagggc aaggattgac
     4501 attttgcccc cggtaatttc agggcgtagc tcggctgaaa tctccattgt ctcccctgcc
     4561 ttgccggtaa attggctttt tggcattgcc ccaaccacat cattttgaac gtgcgaccag
     4621 ttcatttctc ggctggtgtc ttgataaggg attgtcaatc gcataaacac aaaatagcct
     4681 agcgacatca ttgcgaattg ttggagcata ttatttaatc gttacagttt ggctatgata
     4741 tatgatgtaa gaaatcaaaa ataaaattgc cgcaataaga tgctcaaagt aaacaaactg
     4801 caagcataac gcaaaattgg atatgaaact aaaacaagca taagcttttg tttgtcggta
     4861 ttcctgaatt ttaagttctt caataccaac acacattatt ccaactacaa ggatgaatcg
     4921 cagagaaatg aagaaccacc aaaagaacat aaaggtagct tgagcttgct cattaagttg
     4981 agtaaaaaca aataacgtaa tgatatgaaa aatgaatgct gtaatcactt tactgaatgt
     5041 aactgtttta atttccattt taaaatcctt atagcaagcg gtcgagtttt gcaaattttt
     5101 tgcgaaaaac gaccgcttgt tttaactttc caccccattt cgtaagcggg ccttttctcg
     5161 ccattgccct agctcgacaa tcgtcatttc atcaaaggtg ttgggtgtcc aatgaaacac
     5221 ggtagcaata tcagcaatag cgtcatcaac aaactgtgga attaggctaa aatctcgccc
     5281 tttccctgtt cttcgctgtc ctcttcgtct gcctcatcga agtcttcgct cattaaatct
     5341 aaggctttgc cggagagttt tagcaaatcc gctgccgaca ttgtggcaaa atcggctttg
     5401 tctaattttg gcgtggtaat gcgtggcagt acaatacacc actcatcaac gcttaactgc
     5461 attaatgagg taagatttgt gccacgcagt tgtttggtta atggcttacg cacctcaatc
     5521 tcggtaatac gtttttcacc acgcaaaatg ccttgtttta atgttacttt tttcattgtt
     5581 taatccttaa ttatttatca ttaaaagccc cttgaaaaaa ggggaagggg ctttgggaaa
     5641 atttagggga aaatctataa acccattgcc ttacgaattt ccgctaagcg gtctttgcca
     5701 tcgacaatgt aaatttggtt gagggtgtcg atttcgataa tatcgacacc gttcaccgtt
     5761 tttttgtaat aggttagcga ggctttatag ctatgctcgg tgtcatcacc ggctttgctt
     5821 gagccttcgt caatttcagc gattcgccca cggcagacta actctaccgc atcgactgaa
     5881 tcgtcatcgt cgtgctggta cgcaccgttg aaacggaacg cattaccact gattgagcca
     5941 ccaaatagct tgagcaaatc ctcttcgtgt ccgccgattt tgaactcaag ctccagtttc
     6001 tctaaaccca tattgacacc cacaggggca atcattccgc ctgctcggta gtcttcaagt
     6061 tgcatagcca gtttcggctg tgtgacttcg gtggtttcgc ccaaatagct tgtgccgtcc
     6121 accgaaaaat taaaattctt aagttttgcc ggtaatccca tttttacctc tataacgctt
     6181 taagtgtatt gactaaatcc actacatatt catcattgac ccgttgctct aagcctaggc
     6241 tttcgaggga cggaatccaa tggtaatcgt atttaataac aaatttgcct gatttgataa
     6301 tatctgcggt gatctcttca gctacccaca cacgagcacc taaaatgcga gggtcatcac
     6361 ccgatgccca agagcgtagc ttgttgttaa tcgcctctag tattgttttc acacgcaacg
     6421 gtgtgagtgg catatccacc gcccaagcta agcctgctcc gattgtctct ttaatgattt
     6481 gagccgtccg caccgactgc tgaaacgccc agcgggtatc ggtggcaaga gtgcgggaac
     6541 cccaatagcg gaaaccgtta tggtttaagc aaatggtaat gcctttttcg ttcaggtagt
     6601 ttgcctcggt tgagctctcg ttaatatcaa actctaccgc tttagtgata ccggttacac
     6661 cgtctagctc tacgtttgag atgtttttat gccagccgac agttttgtcg atataggctt
     6721 gcaacgcaca agctcgggcc actgcataat cggtatcata ggctttttta tcagtgttat
     6781 aagatttcca gtcaccgaag atcatcattc cttcacgctg agagaaattc tggcgatagg
     6841 tatatgcctg ttctttggtg gttgcaccgt tgtctgaaat aaacgcaaac gcattcagct
     6901 ttttagccac gcttaatagt tcggtcgcaa cggcttgatt atcgtgctgt ggtacacaaa
     6961 gcaatttcgg cttaacaaac acggttgatt gagcggttaa taacgcctta ataccggtaa
     7021 atttgccgtt ttcctgcgtg ccgacaatat ttgcagttaa ggtgtcgcta tcgtccgact
     7081 cggcaactcg cacgatcacc gttggcgttt taacgattga gccaatcgaa ttaagtgtgc
     7141 ggcgtaacgt gccggtgcta cctgcttttt caaggtaatt taacgggtta gtaattaaaa
     7201 cgggcgtatt cagcggaaaa gtctcggcat cggcttggtc tccggtgcaa actactccga
     7261 taaccgaagt agcagcggtg gaaatggtga caccacctgc attgacctca accacctcaa
     7321 caccgtgtag ataggtatct aaaattgaca tagtattcct taattgggaa aggttagggt
     7381 tgaatgttgg ggtaaacttt aaaaaataac cgctcgggtt gcgagcggtt cgggctgtga
     7441 aatggggttt aacaggatta agtgatttcg gtaaactccg gtggatactg ttttcgatac
     7501 acctccgctt tataggctgc atagcaatgc tttttatcaa aaaacaagcc attcacaaac
     7561 gcataccaaa aacgccaacg ctttttcggc ttttccgcaa gcattgcacc acggtaacaa
     7621 cggctgctgg aaaaggtagc ggagcttgtt taaattg
//
LOCUS       DANMGB010000115         7579 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.115, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000115 DANMGB010000000
VERSION     DANMGB010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7579
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.115"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            217..2673
                     /gene="thrA"
                     /locus_tag="PXG19_001827"
     CDS             217..2673
                     /gene="thrA"
                     /locus_tag="PXG19_001827"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL6067106.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
     gene            2673..3620
                     /gene="thrB"
                     /locus_tag="PXG19_001828"
     CDS             2673..3620
                     /gene="thrB"
                     /locus_tag="PXG19_001828"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL6067107.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3735..5111)
                     /gene="cysS"
                     /locus_tag="PXG19_001829"
     CDS             complement(3735..5111)
                     /gene="cysS"
                     /locus_tag="PXG19_001829"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL6067108.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5267..5776
                     /locus_tag="PXG19_001830"
     CDS             5267..5776
                     /locus_tag="PXG19_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6067109.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5868..6797)
                     /locus_tag="PXG19_001831"
     CDS             complement(5868..6797)
                     /locus_tag="PXG19_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6067110.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6800..7558)
                     /gene="fdhD"
                     /locus_tag="PXG19_001832"
     CDS             complement(6800..7558)
                     /gene="fdhD"
                     /locus_tag="PXG19_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL6067111.1"
                     /translation="MKQKDDEENLISEVPVALVYNGISHTVMMATPANLEDFALGFSL
                     AEGILNAPSELYGLDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQL
                     EQVNQSCKIVKKNNRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLA
                     IREDVGRHVALDKLIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTE
                     MAVNMARENQFTLLAFARKGKATIYAGEERLALN"
BASE COUNT         2227 a         1622 c         1599 g         2131 t
ORIGIN      
        1 gcattatttt cacgcattct tgaaccatta ttcactctct tgaccgagat tccgccaatg
       61 aattgtttta atatgatgac aacgattatt accaccatta tgtcaccaac atagtgcggg
      121 ttttaattgg ctgaaataat gaaagaataa accgaaaacc cgctacaagc gggttttttt
      181 gtataaaaat ttacaaataa tttatcagga gtaactatgc gagttcttaa atttggaggc
      241 acttctcttg ccaaccctga acgctttatg caagcggcag agattatcga gaaagctcat
      301 ttggcagatc aagctgccgg cgtattatcc gccccagcca aaattaccaa tcatcttgtc
      361 gctattgtag ataaagcgat tgccggtgaa tcatttcaat ctaacctttc tgaagctacc
      421 gagattttcc acaacatcat taacggctta tatgctacaa ataatcactt tgctaaagaa
      481 gcactgttag ccttagtgga agcggaatta aaccaaattc agcaagtggc tgcagaagca
      541 gctcaaacta aatcgttgtc agataaaatt gctgccacta ttcactgccg tggtgaaaaa
      601 ctctctattg cgatgatgca agcgtggttc gaggcaaaag gctatgaagt cactcgtatc
      661 gaccctgttg aaaaattatt ggctcacggc agctatttgg aatcttcggt cgatattgcc
      721 gaatccacca agcgagttga tgcaggttca attccaaaga aaaatatcgt gctaatggct
      781 ggttttaccg caggtaatga gcaaggcgaa ctggtgttat tagggcgtaa cggttcagat
      841 tattctgccg cttgtttggc agcgtgttta aaagccgatg tttgtgaaat ctggacggac
      901 gtagatggcg tttacacctg cgaccctcgt ttggtgcctg atgcagtatg cttagaaaca
      961 atgagctatc aagaggcaat ggagctttcc tactttgggg cgaaagtgat ccaccctcgc
     1021 accatcgggc cattagtgcc gctcaatatt ccttgtttaa tcaaaaatac cggcaatccg
     1081 gacggaaaag gcacattaat tgatggcaat gtggcaaacg ataatctcaa agtaaaaggg
     1141 attaccaacc ttgataacgt ggcgatgttc aacgtttcag gttcaggaat gcagggaatg
     1201 gtgggcatgg ctgcccgtgt gttctcgacg atgtcaaaag ccggtatttc ggtgatttta
     1261 attacccaat catcatcaga atatagcatc agcttctgcg tgccggcaaa atcggcagaa
     1321 aaagcgttag cggctctaaa tactgaattt gcacaagagt tatctgaaaa cttacttgac
     1381 ccgattgata ttattaaaga tttatccatt gtttcggtag tgggtgatgg tatgcgtacc
     1441 gccaaaggaa ttgcggctcg cttcttctct gccctagccc aagccaacat cagtattgtg
     1501 gcaattgcac agggttcatc tgagcgttcc atttctgctg tcgtgccgtt aaacaaagcg
     1561 attgaagcag taaaagcaac tcacaaatcg ctatttaaca gtaaacgtgt ggtggatatg
     1621 tttttagtgg gtgtaggcgg tgtgggtagc gaactcatcg agcaagtcaa acaacaaaag
     1681 gagtttttgg caaagaagga tattgagatc cgtgtgtgtg ctttagctaa ttcagataaa
     1741 atgttactca acgaaaacgg cttaaattta gacaactgga aagaagattt agaaaaagca
     1801 attcagccgt cagactttga tgtattgctt tctttcatca aattccacca cgtggtaaac
     1861 ccagtatttg tagattgcac ttcggcacaa tcggtggcga acctgtacgc acgagcctta
     1921 aaagagggct tccacgtggt aacaccaaac aaaaaagcca atacatcagg ttacgattac
     1981 tacttagaaa tgcgtgaaaa cgcccgccaa agccagcaca aattcctcta cgaaactaat
     2041 gtaggggcag gtttaccggt aattgaaaac ttacaaaacc tattagctgc cggtgacgaa
     2101 gtagagaaat ttgaagggat tttatccggc tcgctctctt tcattttcgg caaattagaa
     2161 gaaggtttaa ccctttcgca agcaacttta atcgccaaag aaaaaggctt taccgagcca
     2221 gatccacgag atgatttatc cggtgcagat gttgctcgta aactcttaat tcttgttcgt
     2281 gaaaccggct taccgcttga atttgaagat attgaaattg aaggcgtatt gccaaaaggc
     2341 ttctcggaag gaatgagtcg tgatgagttt ttacaagctc taccgtcttt agacgaagaa
     2401 ttcagcaagc gtgtagaagc tgccaaggct gaaggcaaag tgttgcgtta tgtgggctcg
     2461 atcacaggtg ataaatgccg agttgccatt gaagccgtgg acgaaaacca cccactttac
     2521 aaagttaaag acggcgaaaa tgcccttgct tttctcacac gttactacaa ccctattcca
     2581 ttattattgc gtgggtatgg tgcgggcaat agcgtaaccg ctgccggtat ctttgcagat
     2641 attctgcgta ctttacaagg aggagtgaac taatggcgtt acgaatttat gccccagctt
     2701 caagtgcaaa tattagtgtg ggttttgact cattaggcgc tgcaatctcc ccgattgacg
     2761 gctctttgct cggcgatgta gttcaaattg aagagagtga acaacaattt gagctagaaa
     2821 gtgcaggtta ttttgtacgt aaattgccca aagaaccaca aaaaaacatt gtctatcaag
     2881 cctatgtgct atttagcgaa cgcttgaaat tacgtaacgg cagtgtaaaa aatttacgct
     2941 taacacttga aaaaaatatg ccgattggct cagggctagg ctcaagtgcc tgctcgattg
     3001 ttgcagcatt agtggcactc aataaattcc acgatgaacc gttctccaaa atggaattac
     3061 tggaaatgat gggcgaattg gaaggcagaa tttcaggctc aatccactac gacaacgttg
     3121 ccccttgcta tttaggtggc ctgcaattaa tgacacaatc gctcggcaat atttgccaac
     3181 ctctgccatt ctttgatgaa tggtattggg tgcttgccta cccgggcgtg gaagtatcaa
     3241 ccgccgaagc ccgtgctatt ttgccgaaaa gctatactcg tcaagatatg attcagcaag
     3301 cccgctactt aggatctttc gtccatgctt gccatacaca tcaagatatc ttggctgcta
     3361 caatgatgaa agacctaatt gctgagcctt accgtgaaga tttactgccg aactttccgg
     3421 ctgttcgtca aggctgtaaa gacttaggtg cgttagcggt tggtatttca ggttccggtc
     3481 cgacaatgtt tgcgatagcc cctgatctcg aacacgctca acgtttagtg agctatttag
     3541 agaaagaata tctgcaaaac aacgaaggct ttattcatat ctgtaaagtc gataatcaag
     3601 gagcaagaga gctgaaatag ccctctcgaa caaccatatc actaaataac ttaaaggact
     3661 gactccaata ccacttggag cagccctttt tgattaattt tttgaaaagt ctatcactta
     3721 taaacaatcg aaggctatgc cttacgccaa attgtgccgt ttggggtgtc ttcgaggaca
     3781 atatttatcg ctttgagctt atctcgcact tcatcggcaa ccgcccagtt tttagccgct
     3841 ttggcttcgt tgcgttgttt gattaaggct tcgatttctg ccgtttcatc gtcattcgca
     3901 tcacctttta aaaacgcatc ggggtcttgt tccagtaagc ctagcacgcc ggctaactct
     3961 tttaaacgaa cggctaaacc gttggctttt gccatatctt cggttttgag tttgttcaac
     4021 tcacgggcaa tttcaaataa caccgctaat gcccccgggg tgttgaaatc atcgtccatt
     4081 gcggttttaa aggcttctac atagtgttct ccgatggctt cgcccgacac atcacaacca
     4141 cgcagagcgg tatataaacg ctcaagagcc gaacgggcta aatcaaggtt gtcaatgctg
     4201 taatctaata acgaacggta atgagcggtt aagaagaaat aacgtaacga ttcggcatcg
     4261 tataagccta acatatggcg aatgctgaag aaattgccca aagatttcga cattttttct
     4321 ttatcaatgg taagcattcc agtgtgtaac caataattga cataatcgcc accgtgagca
     4381 cagcaagatt gtgcaatttc gttttcgtga tgcgggaaca ttaaatccga gccaccgccg
     4441 tgaatatcaa aatgttcgcc caactctttg ctattcattg ccgaacattc aatatgccag
     4501 cccggtctgc cattgcccca cgggctttcc cagcttggct caccggcttt cgacattttc
     4561 cacaagacaa aatccatcgg gtttttcttg atggatttaa tttcaaccct tgcaccggct
     4621 tgtagttgct ctaaattttg gcgggataat gcaccatatt tctggaacga ttccacatca
     4681 aacatcacat cgccatcggc tgcgacataa gcgtgtccgt tgtgaatcag tttttctacc
     4741 atcgcaataa tttcaggaat atgcttggtg gctcgtggct caacgtccgg gcgaagaatg
     4801 tttaacgcat caaaatcttt gtgcatttca gcaatcattc tatccactaa ttcatcgcaa
     4861 gtttcgttat tttctaacgc acgtttgatg attttgtcgt ccacatcggt aatgttacgc
     4921 acatagcgta aattgtagcc tgaataacgt aaataacggg caatcacatc gaaagagaca
     4981 aaagtgcgac cgtgcccaaa atgacaaaga tcgtaaaccg tgacgccaca gacgtacatt
     5041 cccacctgat ttgggttaat cggtttaaat tcttcttttt cacgttttaa ggtgttataa
     5101 attttgagca taaagtcctc ttgtgtaaca ttcagtaaca aatggggcta agtatagcga
     5161 ataagcggtc tgattttgag atttttttgc aatttggcgt aaacttttta ataatagcga
     5221 gcgaaattta ttttccattc catttttatt tataaaggaa caaagaatga ttacattaca
     5281 taccaatttc ggtgacatta aaatcgaatt aaactttgaa aaagccccga ttaccgctaa
     5341 aaactttgaa gattacgcta aagaagggtt ttataacggc acgattttcc accgtgtgat
     5401 tgacggcttt atgattcaag gtggcggaat gacggcaggt atggctgaaa aaccgacaaa
     5461 agatccgatt caaaacgaag cgaacaacgg tttaagcaac aagcgtggca caatcgcaat
     5521 ggctcgcact tctgatccgc attctgcttc gtcacagttt ttcattaatg tggcggataa
     5581 tactttctta gattatcgct caaaagagat gttcggcaga agtgtagtgc aagattgggg
     5641 ctatgcagta tttggcgaag tggttgaagg tatggacgtg gtcgataaaa tcaaaggcgt
     5701 aaaaaccggc aataaaggct tccaccaaga cgtgccggtt gaagatgtgg tgattgagtc
     5761 tgtaagcgtt gcctaattcc gcaaattagc ctacaagcgg ttgatttttc acaatttttt
     5821 gcatttctca gcgttgcaaa aaagtagcag aaatcgactg cttgttttta tagaaattga
     5881 tacagccaaa taatcagcgg cattgtaaac acacaaagta aagtggttac gccataaatc
     5941 gcactggctt ttttggcatc ttgcccgtaa gccaccgcca tttgggtcgc cgttgcagca
     6001 gaagggctga tggtggctaa gaatgtaatc attaccaccg tttttccatt ctctatccag
     6061 ctcgcaaaac cgccgagttt aatcaccgct aacaaaatca gcggaataaa aatcaagcgg
     6121 agaaaagcca ccaagtaaat gcgtttatcg gtaataatct ctttaaatgg aattgctgca
     6181 attaacatcc ctgccacaag cattgctaaa ggccctaaca tatgccctaa agttgagagc
     6241 gtgtttgcaa gcgtagcggg cagtttgata tgtagcaaaa acaacatcat accaatcaca
     6301 atcgcaataa tgttgatatt aaagatcatc tttctaaacg gcacattgcc tttgccacaa
     6361 atcagcagcc gtaagtgaga ccaaaacaac acattttgca ccacaataaa agccgttgaa
     6421 taaatcaccc attcattgcc gaacagggag gcaacaatcg gaataattaa gttgccggag
     6481 ttggaataaa tagcggtggc ttgttctatg ttgtctaatt tcaacgctct tttgagcagc
     6541 caaccaagca gaattaacaa gccgtttaat aagacggaga ttaaaaatgc cagatacaag
     6601 ccgtttagta tttcggtggt gtaatctact tgaaaagcag taatcagcat tgccgggctg
     6661 ataatgtaaa gtccgataac cgaaatcgga taactgtgct ccgatttgag taatttagtt
     6721 ttaacgatga ggtagccgag cagcaccatc agggttaatt gtagaatttt atcggctaat
     6781 aaaagggcta tttccattat caattaagag cgagtctctc ttctcctgca taaatggtcg
     6841 ctttgccttt gcgggcaaaa gcaagtaagg taaattgatt ttcacgagcc atattcactg
     6901 ccatttcagt ggtcgctgag atggcacaca acatttcaat gccaacggct aagcatttct
     6961 gcaccatttc aaagctggca cgactggtta caaacacaaa tccaatcgga aaatcagctt
     7021 tagcatacca accgattaat ttatccaacg ccacgtgtct gcccacatct tcacgaatgg
     7081 caagcagttt tccatccggg gtaaaaaatg cagcggcgtg gcttgcaccg gtttctttcg
     7141 ataagaattg agcattttct agctgtaata aacaatcctc taaaatcagt ggattgacgt
     7201 tctgcaagcg gttatttttc ttaacaattt tgcaactttg attaacctgc tctaattgct
     7261 ctacaccgca aataccgcaa cctgttctgc ctgccattga gcggcgttta tcttttaatg
     7321 caacaaattg gcggctcgat atttcaagct gaatttctac tccattttct tgttcaatta
     7381 catctaaacc atataattcc gatggggcat ttaaaatccc ttccgccaat gagaatccta
     7441 aagcgaagtc ctccaaatta gccggtgttg ccatcattac agtatgagaa ataccgttat
     7501 ataccaaagc aaccggcact tctgaaatta aattttcttc atcatctttt tgtttaatac
     7561 tattagttga taatgataa
//
LOCUS       DANMGB010000116         7577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.116, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000116 DANMGB010000000
VERSION     DANMGB010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.116"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            387..2882
                     /locus_tag="PXG19_001833"
     CDS             387..2882
                     /locus_tag="PXG19_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL6067112.1"
                     /translation="MSQAVFYLNNFKELFMTVEVGGVVITADLEFENLLRDTQKVDKA
                     MDDIGKSTLKAEKGLKGLETQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQ
                     MGSNASTVIAQQGSQILSIFGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAA
                     QKNLSEVVTQTESGVSALSAKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKA
                     FEQFDGFFGSFTNSSQSIRNAIDELKRYESKGKDVGAVIKELGGTYGGAIAEINALDS
                     VTSEMSKTLGITQSEALGLIKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNK
                     LTRTINDNSVSALDAETSVRLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKA
                     ATIGKTERETAKYAATLLATTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTA
                     DAKAAREAEAAAKKSAQAKKQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGA
                     AATKEQREEAEKLAQSIYGATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILY
                     PQKIMEAEAARAAIEEQYRQQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGL
                     LNGTMSVRDAFASIANTILNSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKAL
                     AASFAPAASMVSLATQGANAIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGE
                     NNQPEIFKASNGMQYMIPGQSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASA
                     NQAAVAKALSNQIKASVRLELQSQMRAGGVLAR"
     gene            2886..3215
                     /locus_tag="PXG19_001834"
     CDS             2886..3215
                     /locus_tag="PXG19_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067113.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            3237..3683
                     /locus_tag="PXG19_001835"
     CDS             3237..3683
                     /locus_tag="PXG19_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6067114.1"
                     /translation="MASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEIFRFHNGVS
                     QTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVEDFGQPVEA
                     KVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
     gene            3691..4407
                     /locus_tag="PXG19_001836"
     CDS             3691..4407
                     /locus_tag="PXG19_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6067115.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKDGNAGGVYR
                     FYSGLNELKTSVVWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKATSDPKADKCSHCLNG
                     CELRGNQRNFGGFVSVNKLG"
     gene            4411..5142
                     /locus_tag="PXG19_001837"
     CDS             4411..5142
                     /locus_tag="PXG19_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6067116.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPVLSTLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLAEKLDFDGILNDIAVNN"
     gene            5411..6001
                     /locus_tag="PXG19_001838"
     CDS             5411..6001
                     /locus_tag="PXG19_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6067117.1"
                     /translation="MITVKFYGHLRKFGTDFRLEVKDTAEAIRALCSQLTGLRETLRD
                     GIYKVRIGKQYLDASALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFQAVLGVALIGAA
                     FFLGPVGWGVLGASSAMMMGAMGASMLLGGVAQMLTKMPNAPNIGNEKEKENSTSFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETMTVEV"
     gene            6004..>7577
                     /locus_tag="PXG19_001839"
     CDS             6004..>7577
                     /locus_tag="PXG19_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL6067118.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQEVLEGYDSSQNEVSVGVEVKKKNGA
                     IVRTVTDERISRLRLTLGVRSLFRQNNQGDTNTTNVDLKITIGTRQYSHSFNGKYSSQ
                     YLESVVFDNLPSVPFNISVERVTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGI
                     SFDSEYFNNIPTRNYLIKAKKVKLPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEIYDL
                     APILSKMLGVEISFDKWALYDVSRYCDQLVPDGMGGQEPRFTCNVWLTEVKTAYDLLN
                     DFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVSGFERSYSARKSRHNAVQVTY
                     SDKTNGYESAIEYVSDDEEIKKHGLNLSQVTAFGCTSRGQAYRTGKWILETEKREKET
                     ITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFTY
                     INGEATHSSIKIQSVNG"
BASE COUNT         2438 a         1500 c         1757 g         1882 t
ORIGIN      
        1 aacaaccatt cagtgatata tttagagcag attcaagaaa tgtgcagctt agataaaata
       61 ggctcatacc agattgattt tgtacgacaa agtgggaatg agtacaaaga gagtattctt
      121 gttaatgatt ttgagttagc aataaaaacc gtattatcca cgttaagaag ggcaaaaata
      181 gatagtgtgt cagtaatatc taacacacct aatttattta ttatccaccg agctttctac
      241 aacgcaagag gtagtcaaga aggaaagaaa ttaggatcga taaggattgc aaaaatttaa
      301 tgtaacaaaa atatagatta aattgtattt aaccaatcta ttgctagata aattgtaaaa
      361 aaatcacaga aataaccgct tgtgctatgt cacaagcggt tttttattta aataatttta
      421 aggaattgtt tatgacggtc gaagttggcg gagttgtaat taccgcagat ctagaatttg
      481 aaaatctgct aagagatact caaaaagttg ataaagcgat ggatgacatc ggaaaatcaa
      541 cattaaaagc agaaaaaggg ctgaaagggc tagaaacgca ggcaaccaaa acggcgatag
      601 cagtaaatca agccacaaac aaaatgaaaa atatccgtgg agtagcaggt caacttggtt
      661 atcaaattca agacatctca ataatgcttc aaatgggttc taacgcttca accgttattg
      721 ctcagcaagg gtcgcaaatc ttaagtattt tcggtccaat gggagctgtt gcaggggcga
      781 tcttagctat tagtggtgct attggtgggg cgttactccc tagtttgttt gattcaactg
      841 atgcaactga gcttttggca gcagctcaaa aaaatctcag cgaagtagtt actcaaacgg
      901 aaagtggtgt ttccgccctt tctgcgaaaa tcattaaatt agcaaaagta agcgaagatg
      961 cagcaaaagc aaaaattgca gtagctatga gtgatgcaaa aatagctatt aaggcagcag
     1021 gggattcatc acaaaaggca tttgagcaat ttgacggctt ttttggatcg tttacaaatt
     1081 caagtcaaag tattcggaac gcaattgacg aattaaaacg ctatgaatca aaaggtaaag
     1141 atgttggtgc cgtaataaaa gaacttggag gcacatatgg tggtgcaatt gccgaaatta
     1201 atgcgctgga ttctgtgaca agcgaaatgt ctaaaacgct tggtattact caatctgagg
     1261 ctcttggttt gataaaactg ttggctcaat tagagcaaga caaaagccct gataatatta
     1321 aattactcgc gatagcttta tctgacttaa gcgataaaaa tgggtgggcg aacgaagagc
     1381 taaataagct aaccagaacg ataaacgata attcagtatc tgctttagat gccgaaacat
     1441 cagtaagact cttagagtct gctataaaag acttgcaaaa tgcaatccaa aactcccaag
     1501 gtgcattgga tggcaatgta gcaaaaatga atcaacttgc agatgcggca gaaagaaaag
     1561 ctgcaacgat aggcaagact gagcgtgaaa ctgctaaata tgcagctacg ctattagcta
     1621 caaccgatga agctaaaaaa aatcttgatt ccacattaag taggattgac gcatcatacg
     1681 atcaaatcga agcctatcaa gccgaacaaa aagccttaca agataaaaag accgcagatg
     1741 caaaagctgc cagagaagct gaagcggctg caaaaaaatc cgctcaagcc aagaagcaag
     1801 ttgtcgaaca gttgcgacaa atggctacac agtacgagat tgctgttttg aggcaaaagg
     1861 gaatgcatct cgaagccgta aaattagaag ctggtatgcg tttaggagct gcggcaacaa
     1921 aagagcaacg agaagaagct gaaaaactag cacaaagtat ttatggagca accgcagcaa
     1981 gtcagaactt taacgctata caagcccaag catctcctgt tactgcatta gaccaacgac
     2041 atcaacaaca gctagctcag atcgaagaat ataaaatctt gtatccacaa aaaataatgg
     2101 aagcagaagc tgcgagagct gcaatcgaag aacaataccg ccagcaacga atggaagctc
     2161 aatgggagga gtggaagcaa gcgagcgacg gggcgagaat gtttggtgat gcggttgatg
     2221 ctgttggttc aagtgcaaca agcacaatta cggggctact aaatggcaca atgtccgtgc
     2281 gtgatgcttt cgcatcaatt gcaaatacga tcttaaatag tgtagtacaa agccttgtcg
     2341 aaatgggtat ggctcaagtt aagcaaatga ttatggggca aactgctgcc aaggcttcta
     2401 tggcggcgca aatggtgcaa gctaaagcgt tagctgcttc atttgcaccc gcggcctcta
     2461 tggtttctct tgccacacag ggggcgaatg ctattcccgc tcaagctgcg atcacgtcaa
     2521 ctatgagtat ggctcaagtc gccgcggtga caggtcgtaa acttggcggc cctgtatcag
     2581 ctagacagat gtatcgtgtc ggcgagaaca atcagcccga aatcttcaaa gcgagcaatg
     2641 ggatgcaata tatgatcccc ggtcaaagcg gtcgtgtatt cagcaacaag cagtcgcaag
     2701 gtcaaggtgg aggcgaaagc aaaacagtag ctgtcatcgt aaatcaaacc aatcacttta
     2761 gcagcgatga agccagtgca aatcaagcgg ctgttgcaaa agcattgagc aatcaaatca
     2821 aggcttccgt gagattggaa ttgcagtcac aaatgcgagc tggtggagtt ctagcgaggt
     2881 aatcaatgca aacatttaat ttcaaggttg agcaagacta cactgttcaa aatgagccca
     2941 gtgtcgtcat actaaaattt gccgatggtt acgagcaaac cgctcccaaa gggttaaacc
     3001 acaatctgaa aaaataccaa ggcattaccg taaaagcgaa caaagcagaa gcggtgaaga
     3061 ttcagcaatt tctcaatgct cacggtgggt ataagaaatt caactggcgc gatagaacaa
     3121 gcgatgagac ggtaacggtt cgttgcagaa gctggagctc cactaaatta ggtgcagtca
     3181 ttgagtttac acttaatttc gatgaggtga tttaatgcca aaagcccccc aaaaaaatgg
     3241 catcagagtt gataaaactc gaacaagatg ccctgattga gctgtgggag atagatctca
     3301 ctcacatcta ctctagctca aacccaaatc agcgcggaga gatattccgc tttcacaatg
     3361 gcgtgagcca aacacaacag aacatctggt ggcaaggcaa tgaataccaa gcatacccga
     3421 ttgccgccga tggttttgag atttcgggtc aaggaccgtc aaatcgtcca acactcactg
     3481 tctctaacct gtacggtgtt gtcacggtat tagtagaaga tttcgggcaa cccgtagagg
     3541 cgaaagtcag cagtgaagag actgtagatg gcaatatcca aatgacggtg gaactgctga
     3601 aaaaaatgga tcaaatcgcc gatcaacgct accgtagaaa tcagttaaat gatttaagaa
     3661 caggtggaac attatctaaa taggtgaagt atgccaatta gtatttctaa ccaaatgaaa
     3721 ctcgaccttg ccaaacttga gcaaaatgca atgcttgatt tgtacgaggt agatttgcgt
     3781 aaattgcaag acaaagacgg caatgccggt ggggtttatc gtttttactc gggtttaaat
     3841 gagctgaaaa ccagcgtagt ttggcaaggg cggacttacg acccttaccc catcgaggca
     3901 acaggatttg agcgtaacag cagcggccca agcaatcgcc ctactcttac gctatcaaat
     3961 ctgtttggct tagttacggg tattgctaat cagtttgatg agtgtatcgg ggcgattgtt
     4021 cgccgtcatc aggtttacgc ccaatattta gatgccgtga attttgccgg gggtaatgcg
     4081 aaagctgatc caaatcagga aataatcagt cattttgtga ttgagcagct taccagcctc
     4141 acccgagaaa cggcgacctt tacgctggca ttaccgattg aaactgataa tgccaaaatc
     4201 cccagcagaa ttattatggc ggacacctgc acttggattt accgctcggc ggaatgtggc
     4261 tacaccggca agcagtattt tgatgaaaaa gacaaggcaa catcagaccc aaaagccgat
     4321 aaatgcagcc attgcctgaa cggttgtgaa ttgcgaggca atcagcgtaa ttttggtgga
     4381 tttgtatcgg tgaataaatt ggggtaatga atggaattgg aacaacaaat aatcgactac
     4441 gccctccaac acgaaccgca cgaaatgtgc ggctttgttg tttttgacgg caataaaaat
     4501 cgatttatcc cttgcgaaaa ccaagcggaa gacaaagcca attactttga aatctccgat
     4561 cttgattaca tcaaagcaga agaaaaaggc gaactggtag cagtagtgca ttcgcaccct
     4621 gagccaaacg gcaagccggt actctctacc cttgatcgca aaatgcaggt acagaccggt
     4681 ttagattggt ggctagtgca taatcggcaa atccataaat tccgcaatgt accacattta
     4741 atcgggcgtg agtttaaaca cggcacaatg gattgctaca cgctctaccg tgatgcctat
     4801 atgcttgccg gttacgagat ggacgagttc gagcgacaag atgactggtg gcataccggg
     4861 caaaatctat atttggataa tattcaaggg caaggtttcg agcgagtaga aaccccacaa
     4921 atcggcgatg tgattttaat gcaggttgga gctgatgtac ctaaccacgc agcgatttat
     4981 attggcgaac agatggtaat ccatcacagc ccgaaccgat tatctaagcg tgatttatat
     5041 gatggctact ggttacgcca tacccacagt atttggcggc ataaactggc ggagaagtta
     5101 gattttgatg gcatattgaa tgatattgct gtaaataact aacaaaaaat gaccgcttgt
     5161 aacaaaaaca aaccccgaag cgtttgcagc acttcggggt ttttcatatc cacttaccta
     5221 actaagagga cataaattaa atgaatgata aacgatttac attcaaattt ctaggagttc
     5281 ttatggaagc aattaatatt accccaaaag aaatcagaaa aacaatgtgg acagccgcaa
     5341 taattctctt tttgtttgcg ttcatctgga aagcccctga atttatcact gctattcgtt
     5401 ggtggtaact atgattacag ttaaatttta cggacatctt agaaaattcg gtacagactt
     5461 tagacttgaa gttaaagaca ccgcagaagc catcagagcg ttatgctcac agcttacagg
     5521 cttgcgtgaa acgttgcgag acggtattta taaagtccgc atcgggaaac agtatttaga
     5581 tgcctcagcc cttgaaaaag ggctttttta ttgcctgaag aaagggcaaa ccattcattt
     5641 tacccctgtt atcaaagggg cgaaaagcgg gggtgttttc caagctgtgt taggtgtagc
     5701 cttaattgga gccgcatttt ttctcgggcc ggtcggttgg ggagttctag gggcttcttc
     5761 cgcaatgatg atgggagcaa tgggggcatc aatgttgctt ggaggagttg ctcaaatgct
     5821 caccaaaatg ccgaatgccc cgaatatcgg taatgaaaaa gagaaagaaa actcaacgtc
     5881 tttttcaaat ttaaataact tggtggctca aggcaaacct gtgccgttgg cttatggctt
     5941 aattcggacc ggctcgcttg tgatttcaca gggagttgag acgatgactg tagaggtata
     6001 attatgggat tatttagtcg taagagaaaa aatcatactc ctaaagaagc accggaaacc
     6061 ggtcgctcta aacagattgt aaatattgtg gaattgctgt gcgagggcga aattgaaggc
     6121 ttggtagatg gctttaaatc gatttactta gacggcacgc agatccaaaa cgatgacggc
     6181 acctataatt ttaataatgt gagcggtcag ctaaatgtcg gtacgcaaga tcaagaggta
     6241 ttagaaggtt acgacagctc acaaaatgaa gtgagtgtgg gtgtagaagt caagaaaaaa
     6301 aacggtgcaa tcgtccgcac cgttactgat gaacgcatca gccgtttgcg tttaacgttg
     6361 ggcgtgcggt cactattccg tcaaaataat caaggcgata ccaataccac caatgttgat
     6421 ttaaaaatca cgattggcac acggcaatat tcgcatagct ttaacggcaa atacagctcg
     6481 caataccttg aatctgtggt gtttgataac ctgccgtctg taccgtttaa tatctcggtt
     6541 gaacgtgtaa cagaggatag caattctcaa cgactacaaa acggtacaat ttggagcagc
     6601 tataccgaaa ttatcgacac cgaatttact taccctaatt cagcggttgc cggtatcagc
     6661 tttgattcgg agtattttaa taatatcccg acccgaaact acctaattaa agcgaaaaaa
     6721 gtcaaattgc caagcaatta tgatccagtt aaacgcactt acaccggctt ttgggacggc
     6781 acatttaaag ttgcgtggac gaacaaccct gcttgggaaa tttacgattt agctccgatt
     6841 ttaagcaaaa tgcttggggt tgaaatcagt tttgacaaat gggcgttgta tgatgtttcc
     6901 cgctattgcg atcaacttgt gccagatggt atgggcggac aagagcctcg ttttacctgt
     6961 aacgtatggc tcacggaagt taaaactgcc tatgacttgt tgaatgattt ctgctcggta
     7021 ttccgtgcga ttccgatttg gaccggcacg gaagtctccg tgattatcga ccgtcctcgt
     7081 gatccggttt ggacttatac caacgctaat gtagtcagcg gttttgaacg ctcatattct
     7141 gcccgcaaat ctcgccataa tgcggtacaa gtgacctatt cggataaaac gaatggctat
     7201 gaaagtgcga ttgagtacgt ttcagacgat gaagaaatca aaaaacacgg cttaaattta
     7261 agccaagtaa ctgcctttgg ctgtacatct cgtgggcaag cataccgtac cggtaaatgg
     7321 attttagaaa ccgaaaaacg agaaaaggaa accattacct ttaccgttgg acgtgaaggc
     7381 ttaatgcact tgccgggcga tattatccgt gttgccgaca gccattatgc cggtacggaa
     7441 attggcggac gtgtactggc gattaatggg cgaaaagtta cccttgaccg tgaaattagc
     7501 attgataacg ccagttattt tacctatatc aacggtgagg caacgcactc tagcattaaa
     7561 atccaatcgg taaacgg
//
LOCUS       DANMGB010000117         7563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.117, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000117 DANMGB010000000
VERSION     DANMGB010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.117"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..1259)
                     /gene="tolB"
                     /locus_tag="PXG19_001840"
     CDS             complement(<1..1259)
                     /gene="tolB"
                     /locus_tag="PXG19_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL6067119.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFP"
     gene            complement(1275..2498)
                     /gene="tolA"
                     /locus_tag="PXG19_001841"
     CDS             complement(1275..2498)
                     /gene="tolA"
                     /locus_tag="PXG19_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL6067120.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(2512..2949)
                     /gene="tolR"
                     /locus_tag="PXG19_001842"
     CDS             complement(2512..2949)
                     /gene="tolR"
                     /locus_tag="PXG19_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL6067121.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(3091..3771)
                     /gene="tolQ"
                     /locus_tag="PXG19_001843"
     CDS             complement(3091..3771)
                     /gene="tolQ"
                     /locus_tag="PXG19_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL6067122.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(3793..4194)
                     /gene="ybgC"
                     /locus_tag="PXG19_001844"
     CDS             complement(3793..4194)
                     /gene="ybgC"
                     /locus_tag="PXG19_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL6067123.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
     gene            complement(4357..4644)
                     /gene="ybgE"
                     /locus_tag="PXG19_001845"
     CDS             complement(4357..4644)
                     /gene="ybgE"
                     /locus_tag="PXG19_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL6067124.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(4644..4742)
                     /locus_tag="PXG19_001846"
     CDS             complement(4644..4742)
                     /locus_tag="PXG19_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL6067125.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(4757..5890)
                     /gene="cydB"
                     /locus_tag="PXG19_001847"
     CDS             complement(4757..5890)
                     /gene="cydB"
                     /locus_tag="PXG19_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL6067126.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(5903..7453)
                     /locus_tag="PXG19_001848"
     CDS             complement(5903..7453)
                     /locus_tag="PXG19_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL6067127.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         2367 a         1674 c         1220 g         2302 t
ORIGIN      
        1 gggaatttat aatgtccacc tgcgccaggc aaattagctt taaaacgccc atctgcagac
       61 accaattgta gcactttact cgtacctttg gtagagctat aaataaccat aatgccattc
      121 ggtgaaatac ttggactttc gtctaagaaa gttgaactca gtacttctgt gccacctgaa
      181 gcgagatcgc gtttcacaac tctatcaccg gcaatcatga ttaaattctt accatcagat
      241 gatactttcg cattatagct accgctaccg cccattgggc tagcaccacc acctgatgaa
      301 ctcattctat aaacttgagg agaacctgca cggtcagacg taaagtagat tgtgctacca
      361 tctggagacc agcttggttc agtattattt ccagcattag cggtcaattt acttggtgta
      421 ccaccgccac tacctacaac ataaatattt aactcaccat cttgatttga ggcaaacgca
      481 atgcgagaac cgtctggaga gaatgatggc gcaccattat gtcctttcaa tgctgccact
      541 acacggcgag cacctgaacg aatatcgtga acaacaacct gcgctttttt attttcaaat
      601 gtcacataag ctaatctgct accatctggt gaccactctg gcgacattaa aggctcttta
      661 ctggttgtaa tagtaaaggc attaaaacca tcataatcag atactcgtaa ttcatacgat
      721 gatacgccac gttgaaccac atacgcaatt ttagttctaa atgcaccgcg aatttgggtt
      781 aatttttcaa atacctcatc acttactgta tgcgcacctt gacgaatttg ggctgccgga
      841 acaataaatg aaccttgggc aatgacacca cccgctgtac ccgatgtacc aagagtatca
      901 attaattgat aagcgacatt ataaccgcca cctgtgctac tcacttggcc aactacaata
      961 ttatcaatac cgatagcact ccattgatct gccaccactt ccgctgctga tcccggttga
     1021 gcaggcattt gagagcgttc aagcggtgta aatttaccac tatttcgcaa atcatcagaa
     1081 ataatttgtg caacatctgc cggcacaccg ctggctttaa atggcacaac cgcaatcggc
     1141 tgagccatac ttacaccttc atcaatagaa attcgcacat cagaatcagc aaccacctga
     1201 gttgtcaata atgctgaaaa gatgcctatt acacccgata tacgagagaa taatttcatt
     1261 tgtagtcctc taaattattt aacttttaaa ctaaaatcaa gtgttggtga tttaaacata
     1321 ttatataccg catctgatgg tgcaggtggt acttttctag ttgccactat tgcacttacc
     1381 gctgcatcac atactgcttt atcgccactg ataacttgat agttagtaat tgtgccatct
     1441 cgacttaaga atatcttaac atcacattgt tttccggcaa aacttggatc aacccgatat
     1501 cgagattgaa ttaatttctt aattcgttga ccatatgcat taccatctac attagtacct
     1561 tgccctaagc cacttgtacc accagaacct tgtgatcctg ctgagttttt gttaccacct
     1621 ttacttgaac caccaccgat gtctccacta ttgaggaaat catcaagtgc tttattgttt
     1681 ttcgcttggg cggcttttgc ctcagcagct gccttcgctt tagcttcttt ctcggctttc
     1741 tctttggctt ctttttctgc ttttgctttg gcttctttct cagccttttc ttttgcttct
     1801 ttttctgcct tggctttagc ttctttttct gctttttcct tcgcttcttt agcttctttt
     1861 gcctgctgtt ccttcagttc tttttgctct tttaactttt tctcagcttc cgctttcttc
     1921 tgctgttcaa gcttcttttc aagtgcttct ttagcttttt tctcttcttc agcttgttta
     1981 gcagcagcct ctaaacgctt agcttctgca tctgctttca gttttgctgc ttcagctgct
     2041 tttttacgag ttgcttcttc tgcttgctgc tttttaagct cttcttgctt agcttgttct
     2101 tgcttttgct gttcttgtag tttttgctga cgctcaattt cttgctgacg ctgtttctct
     2161 tgaatcgccg ctaactcagc ttgtttctgt ttttggatct cttccggagt cggtttatct
     2221 tccacatctt cttcaacagc ttcctcttta ggctctacct ttggcttcga tgcttttgag
     2281 ccttttttct ctgccaataa ctgcccatat tcagcagcca cttgcccagt atctaccatc
     2341 acagcttcaa agctatcgct atcgccacca ctgccaccag ccgcagcgag ttccgtctta
     2401 gtgaaaagag acccgagcaa taacaacccg attaacaata tatgcaataa gatcgaaaca
     2461 ataaccgcta gctctagtct atcttgttga gatttcacac gttatccttg gctatttacc
     2521 ttctgtcatt aaacctaccg atttcactcc ggcgtcttta agtagtgtaa tacctttcat
     2581 aatttcttca taaggtacta ctttatcacc ggcaactaaa aataaggtat tgttatcttt
     2641 ttgaaattgt tcccctgcat aggcaacaac ttctgattca ttaatattct cttgcccatt
     2701 actttgcaca tagttaccgt caattttcaa tttatattca ccaacacctg ccacctccaa
     2761 aatcactgga gttttatctt cattagaaac tgattggcta tgcgtatctt ccggtaaatt
     2821 aacttctaca ctttgactga taattggggc cgttgccata aaaatcagca ataataccaa
     2881 caatacatca agaaatggaa caatgttgat ttctgattta atgtcattac gttttaaacg
     2941 acgagacata tattcctctt tacaggtgct tagcacctta attgatctga aataaccggc
     3001 acagtgtccc ggtctcgaat aatgcggtta caagcggtct tttttacgaa aaactttaca
     3061 aattttcatt aaaaatcaac cgcttgtaga ttatcttttt gaaaaagcct gacggtgtaa
     3121 taaggtcgtg aactcatcaa tgaaattcac atacccttgc tcaactttac ctaaacgtaa
     3181 attcaaacgg ttatatgcca ttactgcagg aatcgccgca aataaaccga tagccgttgc
     3241 aattaatgct tctgcaatac ccggtgcgac tgattgtaaa gttgcttgct taactgcact
     3301 taatcccata aaggagtgca taattcccca aaccgttccg aataaaccaa tatatgggct
     3361 gattgaaccc actgtgccta aaaacggaat gtagttttct aaactttcca tttcacggtt
     3421 taatgctaag ttcatcgcac gggtagaacc ttgaataatc gattctggcg catctgggtt
     3481 cgcttgttgt aaacgggtaa attctttaaa cccaacataa aagatttgct ctgaaccatt
     3541 taatgcatca cgacgattct ctaaaccttg gtgtaaacgg tttagatctt cccctgacca
     3601 gaatcgatct tcaaaagcaa gggaatcttt tttggcttta gttaaaattt tgctgcgctg
     3661 aataatcacc gcccaagaca aaattgagaa tacaataagg atcagcatca cgatctttac
     3721 cacaatactt gcttctaaaa ataacgaaag aagactaaat tcagtttgca ttaataaaac
     3781 tccgaatagt ttttaaatag aaaaataact tttttgtaat gcttgacgaa tatcatcagg
     3841 aattgcaacc ggcttcattt tgattaaatc aacacaagcg accgtaacat ttgcctcact
     3901 cagacaatcg ccatctttcc acaatcgttg tttaaagata agggttgctt tcttcaattc
     3961 tgagagtgtt gtttccacat ttaataaatc atctaaacga gcagggagct tataatctat
     4021 ttcaatcctc ttaacaacaa aagcaaggga ttggctaaaa agttcctgct gtgagaaatg
     4081 ctgctgtctc aaaaattccg ttcttgcccg ctcaaaaaaa ttcagatagt tggaatgata
     4141 aactactccg ccggcatcag tatcttcata ataaacacga atcgggaaat ccataagcat
     4201 tatttctctc attcaaaatg aaaaaacgcc caaaatttag gcgcaaattg tgagatattt
     4261 taggatcaga aatattgtta tgcaagtata ttttttggta aattgcaaaa atatttttta
     4321 tctatcaaaa ataaaaatag agacataaaa atgcctctat ttaacaagta aaatccataa
     4381 tgccggaata acaataaggt aacctagaag tggtaaaaaa atcactttcc aaatagcagc
     4441 tcggatttca aatccaattc catgtaccca taaaatagcc ataccataaa ataccaacat
     4501 tgctaaatac ggcgtttttc caccaaaaga aagagcgaaa gcggtcgaat ttacccaaat
     4561 agttgcaaat aatacagccg ctaaaataaa agaaagggct tttaacaagc cctttgctgt
     4621 taagttatag agtttatgaa tcattactcg tcaaacttac ctgttttttc aatgctgatc
     4681 gtgatgactg ttgcaaagaa gattgcaagc aatacaccta agacccaagt tacataaaac
     4741 atattgtgtc tccttattag taagctgctt tattttcttc taaataacta gcatctaaac
     4801 gaccatacat tttgatatat gaccaaatag tatatgctaa tactaacggt acaaagatac
     4861 cagcaacaaa taacattaca gttaatgttg tgtggctagc agtagcgtcc caaaccgtta
     4921 agctcatttc tggatgagta attgacggca taatgaatgg gaacattgat actgcagcag
     4981 ttaaaatcac cccaacaatc atcaatgatg atgagaagaa tgctaaacct gaacgatttg
     5041 cttttgaggc aataatagtc agtaatgcac ctactacaac taatgcagga acaacccata
     5101 atacaggcat ttcagcataa tttctaaacc atgcaccagc ttgaaccgct acagttttat
     5161 tcgtcaatag agattgtgca ttatgatcta actcgcttgt gatcacaaaa ccatctttaa
     5221 aatataacca tacacctgca agaataaatg ccactaatac aatagaagct gtcacttgtg
     5281 ccacttttct tgagttgtta tgtagctcat cagtagtttt catttgtaac caagttgcac
     5341 cctgtgtggt taacatcatt aagctgataa taccgcacac taatgcaaat ggatttaata
     5401 aaccaaagaa tgaacccgta tattgtgatt ggttaatatt attaaattca aatggtacac
     5461 cttgtaataa gttaccgaat gcaacaccga atactaatga tggaacgaaa ccaccaataa
     5521 ataatcccca atcccaagca ctacgccatt tcggattatc aatttttgca cgatactcaa
     5581 aacctacagg gcggaaaaat aatgctgcaa gcacaagcac cattgcaata tagaaacccg
     5641 agaacgaagt tgcatagact gttggccatg cagcgaagat cgcaccacca gcggtcaata
     5701 accatacttg gttaccatcc cagtgagggg caattgtgtt gatcataata cgacgttcaa
     5761 cattactttt accaatgata ggtaaaaggt ttaatacgcc catatcaaaa ccatcagtaa
     5821 ttgcaaagcc aattaacaat accgcaatta agatccacca aataaagcgg agaatttcat
     5881 aatcgatcat ttctaactcc tattatttag ttgattgttc aaaataataa cggcctgttt
     5941 ttaatgcact agggccaaga cgaccatatt tgaacattaa atacatttct acaactaaga
     6001 atagtgtata taaaccacac aataagccga ttgtaaacca taaatcacct gttgttaatg
     6061 cagagtttga cacaccgaca ggtaacattt catagatagc ccaaggctga cggccatatt
     6121 cggcaaggaa ccaaccagat tcaatcgcaa tccaaggtaa cggaagaccg aataacaagc
     6181 ctcttaataa gaaacggcta ctttctactt taccacgcat attttgaata aatgctgtcg
     6241 taatcaagat aagcatcaag aagccagata acatcattac acggaatgcc cagaatgtag
     6301 ggcctacatt tggaattgta ttatctgctg ctttttgaat ttgttcttca gtcgcatcaa
     6361 ccacattagg tgtatattgt tttaacaata acccaaagcc taaatctttt tgtacagctt
     6421 taaatgcttc tttatccgcc tctgtataat tgccagaacg taatttttct aatagtccgt
     6481 aggctaccat accggtacga acacgttgtt cattaattac acgaatatct tttaggcctt
     6541 taatttcttt atctaaagaa cgggttgcaa taataccagc tgcataagga atatgaattg
     6601 agaattcatt tttcatttcc gcagtatttg gaatcacaaa agcattccaa gcagctggag
     6661 caggctgagt ttcgaattca ccttccattg cagctaattt agtcggctga gctttaccga
     6721 tttcataacc agattcatca cccataatca gtacagagat gatcgcaatt aaaccaaaac
     6781 ttgcacctac tgagaatgaa cgttttgcaa agcctaagtc acgacctttt aagatatagt
     6841 atgaactaat acctaataca aaaatagcac cacaaacata gcctgcggtt acagtatgta
     6901 agaatttaga ttgtgtaact gggtttaata caagttcaga gaaacttgaa agctccattc
     6961 gcatggtttc aaagttgaat tcagaagcaa tcgggttttg catccaacca ttagcaacta
     7021 aaatccatag tgcagagaag ttagaaccaa acgcaacaca gtaagttgct aataaatgtt
     7081 tcgctttcga taaacgttcc cagccaaaga agaacaagcc cacaaaggta gattctaaga
     7141 agaacgccat taaaccttca atcgctaatg gagcgccaaa aatatcacct acataatgag
     7201 aataatatga ccagttcata ccaaactgga attccattgt aataccagtt gttaccccta
     7261 gggcaaagtt aataccaaat aatttacccc agaatttagt catatcttta tatacttctt
     7321 tacccgtagt tacatacagg gtttccatca ccacaaggac gaaagaaaga cctaatgtaa
     7381 gcggtacgaa taagaagtga tagagtgcag ttagagcaaa ctgcaaacgt gagagttcaa
     7441 ctacatctaa catctcaaac ctcttatatt aatatactaa tttgacaatt agattactgt
     7501 aaaagtaatc acccacaaat tcactcaatt ctaataaata acccaaattg gttaatttta
     7561 taa
//
LOCUS       DANMGB010000118         7550 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.118, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000118 DANMGB010000000
VERSION     DANMGB010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7550
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.118"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            207..875
                     /locus_tag="PXG19_001849"
     CDS             207..875
                     /locus_tag="PXG19_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067128.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            872..1753
                     /locus_tag="PXG19_001850"
     CDS             872..1753
                     /locus_tag="PXG19_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6067129.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            1753..2568
                     /locus_tag="PXG19_001851"
     CDS             1753..2568
                     /locus_tag="PXG19_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6067130.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            2565..3701
                     /locus_tag="PXG19_001852"
     CDS             2565..3701
                     /locus_tag="PXG19_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6067131.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            3729..4127
                     /locus_tag="PXG19_001853"
     CDS             3729..4127
                     /locus_tag="PXG19_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6067132.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            4162..5865
                     /locus_tag="PXG19_001854"
     CDS             4162..5865
                     /locus_tag="PXG19_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6067133.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            5977..6621
                     /gene="adk"
                     /locus_tag="PXG19_001855"
     CDS             5977..6621
                     /gene="adk"
                     /locus_tag="PXG19_001855"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL6067134.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(6683..7498)
                     /locus_tag="PXG19_001856"
     CDS             complement(6683..7498)
                     /locus_tag="PXG19_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6067135.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
BASE COUNT         2216 a         1485 c         1484 g         2365 t
ORIGIN      
        1 tataataaaa atatatttag caccgttttc ataatagatt ttcatctact cattttcatt
       61 ttgattgatt tggtggggta atcccacctt ttttatgctc ttaaaacaca acactatgat
      121 tcaaataaat tccattagct actctgttga acaaaaccgt aaactgctaa gcaatatttc
      181 cctcaattta agcaaggggc gtttatatgg cgcataacgg ctcgggtaaa tcaacgttaa
      241 tgcgtttact aagcggagat ataacgccta ccagcggttc aattttagtc gatggattac
      301 cacttcatca gctttctacc aaagaagcgg caaaacatat tgcctattta ccacaacgtt
      361 tacctgaagc ggcggatttc ttagtgcagg aactggttgc tttagggcga tttccatatc
      421 aaaaatggct acaaaaacca acagaatttg atgttcaaat tgttgagcaa gcaatggaaa
      481 gcacctccgt tactcagttt gctaaacagc ctgtaaatag tctatcaggc ggagaaaaac
      541 aacgagtttg gcttgctatg tgcttagccc aacaaacacc ctatttactg ctagatgagc
      601 cattggctgc ccttgatatt gtttatcaag ttgaagtaat gcagcttatt cgcaagctag
      661 tgaatgaaca aggtctaact gtcattatca ttattcacga tattaatctt gcctcccaat
      721 tttgtgatga aattattgcg ttaaagcaag gcgaactctg tattcaaggt tctgttgatg
      781 aaattatgca agaacagaaa ttacttgaga tcttcgggct aaaactgcac ttgtttaacc
      841 accctgcagg cttacataaa gtggcggtat tatgatgttt aggcaataca agcggttcat
      901 ttttctcttt attttgcaaa tttctaccgc atttgctcaa cctaatattt ttacaccaga
      961 ttggtctatt gcctctgccc ttactgaaat gggaaatccg cccattgcga tgggggataa
     1021 gcgaatttat ccgctatggt cgcaccgccc tattcagcct aatagcgtgt tagatattgg
     1081 agcgcgttat cagcctaatc gcgaattatt agcacagctt cctgttgaat tggtgctatc
     1141 aaactttttc tacgctcact tggcttctgt ttacccgaaa gaaattccac aaatagacgt
     1201 gctatttgat ggtggcaata ctgaacctca gcaacattgg catacttacc aaaaagccac
     1261 tcgtatgatt ggaacagaga ttaaaaaccc taatgcggca gaagcatatt taacgaaaac
     1321 tgaacaaacg ttggctcaat gggggaaaga aatccttaac agtaatccag atattgatta
     1381 ctactctgtt gttcaatttg gctctccgag agagttacgc atatatgcgt ctaattcaat
     1441 gttccgtgta gcctttgatt tgatgggctt aaaacaagct gatttaggtg tgggagatcg
     1501 ctggggaaat aaacttattc ctgtgagtga tttagctaaa ttacccgaac gcacctgttt
     1561 aattgtcatc tcaccttttt ctaaaatgac gcaagcagat ttagaaaata gctacatttg
     1621 gcaacgttta ggatttggta aaaaccgttg tatgaaagta ttaccgcctg tttggctctt
     1681 tggtggggct gattccatct cgcactttgc tgagttttta cacaatgcaa tgacacaagg
     1741 agaaaaagag taatgaaatc atcattctta ttgattggct gtattctttt atccttagta
     1801 acagctgtta tccgtttaaa tatggtctgg gagtgggaat ggcagttact actcataaat
     1861 gttgatttat tgccaattaa tcaagctgcg gtaaaagcag ctcttttacc tgaaatgaca
     1921 acgtcatttt tagcaggcgg tttattggct atagccagca gtggcttaca acatattgtc
     1981 agaaataatt tagcgtcaga tagcacactt gccgtcagta gcggggctca acttgcattg
     2041 atgattgcgg ttatcttttt cccagccgcc gagctttttt ctagtttctg gattgcgtta
     2101 cttggctctt tagctgctat cgtactggtt ttatttattg ctaaagcctc taagctcaat
     2161 ccccttaccc ttattttagg gggattgatt gttaatattt tgtttggagc tattgcctct
     2221 ttactgaccc ttttctactt tgatttttta tttggcgtga tggtttgggg aagtggctca
     2281 cttttacaag atggttgggc aacttctatt accttagcga taacggtagt agttgcattt
     2341 tttatctttg tcttactctc tcgtccactc acaattttaa gtttagatga tgaacaagct
     2401 cgccgcttag gcgcgcctgt taatttacta cgctacttag ttatttttgt ttgtgccgcc
     2461 attacagcat tggttgtaag caaaataggt gtgattggct ttattggatt tgcagtgcaa
     2521 gtttggctca ttttgccaaa atacgacatt tattacttcg cctcttgatt gcttttctag
     2581 cgggcggatt tttactcttt tttaccaata atctcatcgg cattgttagc agaatttacg
     2641 acactctact acctgttggt gcatttaccg caacactagg cgcaccatta ttaattttct
     2701 tggtattacg ccaacgtaaa gcacaatttg aagcaagcaa tacagcatac ttccccgtta
     2761 aacgcctcaa ttcgtggaaa ctgccaatat tgttgttatg cgctggagtt atcctatttt
     2821 gtctattaca aatcattgct ccaacaatga atggctgggc tattagcatt gatgaaaacc
     2881 tgatgagttc ctaccgcttg cctcgtagtc taagtgcgat agcaacaggg gcaatgcttg
     2941 cggtaagtgg tagcctatta caaatcttaa cgagaaaccc aatggcaagc cctgaagtat
     3001 taggtgtgag ttcaggggca actattgctg cagtactgtc attcttactt ttcccaacat
     3061 tatctagcat tagcttcttg ttatttggtg tattagggag tttgactgtt ctcgctctta
     3121 ttatgtggct ctctcgtaaa ttacaaccat cagcgttaat gattacaggt gttgctattg
     3181 gagctttagt cagtggctta atggctatta ttcaactaag cggcagccct cgtttaacgg
     3241 cagttattag ttggctgtct ggctcaacct attacgctaa tccgaataca gtttggattt
     3301 tattatctgt tgcaatccta cttatcagtg ccactttact gtttatcaaa cctttacgtt
     3361 tgatctcact tggcgagacc gtttcttacc atttagggtt agaggttaaa aaagtacaaa
     3421 tgattgtatt acttttaatt gccctaatga gtgccgcctc tacacttgcg gtagggccaa
     3481 tgagcttcat tgggctaatg acccctcatt tagctaaaaa tttaggtgca attacaccgg
     3541 agaaacagat ccctatatcg gcattattag gggcaatgct aatgctcatt gccgattggc
     3601 tcgggcgtta tctaattttc ccttatgaga ttggggcagg cattattgcc tctattctcg
     3661 ggggtatcta tttcttactg ttactcaaac aacataaata attttttatt cattacttag
     3721 gagaaattat gaacacgcta tctaaagcga taaaacttgc cttatacagt tctggtatag
     3781 ggtttatctc aacagcttac gctgaaacag ttactcatct tgataccgta gaagtaagtg
     3841 ccgaaacgcc aaatgcctca tcggaagaaa ctggacgtta tgcacagaaa aaagccaaag
     3901 gctctaatgg aatggcattg agtgcgaaag acacgccaca aagcgtaacg gctgtaacgc
     3961 atcaacaaat cagagatcaa aatcttaata cgattgccaa agcacttgaa gcaactcacg
     4021 gtgtttctgt ttctttactt gacagaggac gctattcttt cagtgctcgt ggttttggga
     4081 ttgataaagt caaggtagat ggtatggatc tcaaagtaag taaataacca atggacaacg
     4141 ggcgaaaata caggcaacag cgtgttatac gaccgagtag aagttgtgcg tggtgctaca
     4201 ggcttaacta ctggggcagg cgatccttct gcaagtgtta atcttgttcg taaacgagcc
     4261 aatagcattt cccgttatac tattttagaa gctggaatcg ggcgttatgc tgatttcaat
     4321 acaatgattg accatagcca agcattgaat aattcaggat cagtaagagg ccgctttatt
     4381 gcagagcata aaaacggtaa tacgttcatt aaaaatgaaa aagaacgtta caccacgctt
     4441 tatggcaata ttgaagcaga cttaactgac actaccaaac ttgggttagg tgtaagctat
     4501 caaaaagaaa aacgtgatgc agcactttgg ggtggtttac ccgcattcta tagcgacggt
     4561 ggtgaaacta actggagcag aagcaaaaat gccagtccgg aatgggctta ctgggataat
     4621 gaatccgtaa actattttgc cgatattaca caaaaactag gcgaaaaatg ggaacttgca
     4681 ttaaaaggca attaccgtgt aggcaaacat aattcagaac ttttctattt cagcggctca
     4741 tcacttaatc gccaagatgg attaggttgg tcgccttggc cgggtaaatt taaaaatgat
     4801 aatacacaat ctaatgtgca gcttgatctt accggttcat tctctgcttg gggattagaa
     4861 cacgatgcgg caatcggtat tcaatacaat cgagcacatc gtaattccta cgctgccgat
     4921 aatagcacct ttgacggagc tttcgacttt aataattgga atggcattta tgctagacca
     4981 aactggggaa gtatgtctga aaaatactac caaaacttaa aagagttcgg ggtgtatgtt
     5041 tctacccgtt tacatcttac agatagactt tctatgcttc taggttctcg tatttcatcg
     5101 taccgcacag aaggcacttt ctatggttca acacaaaact tccacgctaa cgatgtttgg
     5161 acaccttatg caggattaac ctttgatatt aatccacaaa ataccgttta tgtaagttat
     5221 accgatattt tcaaaccaca aagtcaagtg gacatcaata acaaactact ctctcctgtt
     5281 acgggcgaaa cctacgaagc aggttggaaa gggagttatt tcaatgacaa cttgcaaact
     5341 caaattagcg tatttgaaac aagacaagat aatctagctc aatctgccgg tattaaccct
     5401 aatacattat tagcctacta cacagcctct aaaggtgcga aagttcgagg ctttgaagta
     5461 gaagcatctg gaaatgtaac tgaaaaatta aaactcagtg caggatatac tcagtggaaa
     5521 ggcgatgatg cttcaggtaa cccaattaac acaactcaac cacgcaaaca atttaaactc
     5581 tttgcaactt acgatatgaa ccgtttagtg caaggtttaa cggtaggagc aggtgtaaac
     5641 tggcaaagca gaatttatac caaacacgct acttatggcg aatatggtca aaaagcttac
     5701 actttagtga atttgatggc tcgttatcaa tttaatgaca acttctcagc acagcttaac
     5761 attgataact tattcgataa aaaatatcgt aacgccctca gctttagcca atatagctac
     5821 ggtgagccat tctatacacg cttaaattta cgctatgaat tctaattccg tataacaagc
     5881 ggtcaaaaaa ttaaaaaaat ttgcaatttt aggcagtaat cggtaaggtt actgcctaag
     5941 tgattttatt atttttagtt taattgaggt tttcaaatga aagtgatttt attaggtgcg
     6001 ccgggtgcgg gcaaaggtac gcaagctcag tttattatga acaaattcgg tattccgcaa
     6061 atttcaaccg gcgatatgtt ccgtgcagcg attaaagaaa gcactgagct tggtaaacaa
     6121 gcaaaagcat tgatggacga aggcaagtta gtgccggatg aattaacggt cgccttagta
     6181 aaagatcgta ttgctcaacc ggattgtgct aatggcttct tattagacgg tttcccacgc
     6241 accattccgc aagctgatgc gttaaaagag tcaggtgtaa aaattgattt agtgttagag
     6301 tttgatgtag ctgatgaagt cattgttgag cgtatgagtg gtcgtcgtgt tcaccaacct
     6361 tcagggcgta cttaccacgt ggtgtacaat ccaccgaaag tggaaggcaa agatgatgtg
     6421 actggtgagg atttaattat ccgccaagat gacaaacctg aaacggtatt agagcgttta
     6481 gcgatttacc acaaacaaac caaaccgtta atcgcctact acaccgcaga agcagaagcc
     6541 ggcaacactc gttatgagcg tttagatgga acaaaaccag tggaagaagt aagtgctgag
     6601 ttagcgaaaa ttttatctta aatggattat taaaatgaac aagcggtaat atttttcgag
     6661 aatattaccg cttgttcttt gcttaaacac aatatttggt gagcattaag atatcatcat
     6721 aaatcggtga aataaacact tccggatttt caatcttcat ctcctttggt ttttcttcta
     6781 gcttttctgg ctctttctta tctttattct ctaccggttg agtcgcttca tttaccacac
     6841 tagcttgagt tttatctgct acaggtatat ctattttgtt tggtgcttgc tctactgctt
     6901 gagaatccgc tttcagctct ttagaaactt cagtatttac gataggttct tgtaagtttt
     6961 ccgctactct ttcctctact tgtggcttaa tactttctgc ctctgctctc ggtttataag
     7021 atggatcaag taattgatgg ctaatatcca ttttcggatc aagccaaatt gctacaatag
     7081 catcattgaa agctttatta aacacatcag agactacttt atcatttaaa ataaaataac
     7141 ctctatcttc taatgcaata tagtgcaatg tatcttcagg cttaatatct gggaaagttt
     7201 ttctcaggtg ggtaataacc tcatctaact ctttttcagg tagcttaatg cctaaattat
     7261 tccaagttct tgctaaagaa accgcaaaat cacgcccctc ccacggtttt ttatattgta
     7321 gagtaagcat taaaggacgt gtaccttcta cataagtacc gctctcagta aaaagcgtaa
     7381 tatggtaaat attaaatggc ccccacgtat aattcacatc attaattttt gtccaatttg
     7441 catttgctgt tgataaaaat agagaaaaca acagcgaaaa gaccacttta tagctcatta
     7501 tttttgtgtc cttaaatcta aaattcctac tcattattat agccttaaat
//
LOCUS       DANMGB010000119         7547 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.119, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000119 DANMGB010000000
VERSION     DANMGB010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7547
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.119"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            1..170
                     /locus_tag="PXG19_001857"
                     /pseudo
     CDS             1..170
                     /locus_tag="PXG19_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            422..1612
                     /locus_tag="PXG19_001858"
     CDS             422..1612
                     /locus_tag="PXG19_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL6067136.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            1687..3198
                     /gene="nhaC"
                     /locus_tag="PXG19_001859"
     CDS             1687..3198
                     /gene="nhaC"
                     /locus_tag="PXG19_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6067137.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            3315..6914
                     /gene="putA"
                     /locus_tag="PXG19_001860"
     CDS             3315..6914
                     /gene="putA"
                     /locus_tag="PXG19_001860"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL6067138.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            7023..>7547
                     /locus_tag="PXG19_001861"
     CDS             7023..>7547
                     /locus_tag="PXG19_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL6067139.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFWSQAKRHLRK"
BASE COUNT         2163 a         1560 c         1776 g         2048 t
ORIGIN      
        1 gaattgagaa tttttggagc caagcaaaac gccatttgcg taaatttaac ggcataccta
       61 aagctcattt tgagctgtat ttgaaggaat gcgaatagcg ttttaatcac agtgacttaa
      121 aatctcaaat ttccatttta aaacagttgg ttaggggttg tttaagttag ttatctagga
      181 cagccctaaa ttttgtagtt ggaatttcaa cggagaaagt tatctataaa cttacaaaag
      241 ttatagaaaa tggaggcatt tttgcttaaa gtatgctatc tattcatatt aattgcatag
      301 ttaatcaaca actgaagaaa aattagaagt agatcataaa atcaacaaaa agtccgtgct
      361 ttttagctaa agattgttaa actcttttgt gttacaagtt tttaacataa aggagttttt
      421 tatgtctact tctcaacaac tcatccaaca aaccgaacat ttcggtgcca ataactacct
      481 acctctacct attgttatta gtaaagctaa aggcatttgg gttgaagatc ctgagggtaa
      541 tcgctatttg gatatgctta gtgcctactc agcggttaat caagggcatt gtcatccaaa
      601 aattgtacag gcactaaaag atcaagcaga caaagtaacg ctgacctctc gagcatttta
      661 taacgatcaa cttggtattt ggtatgaaaa aatctgcaaa ctcgctaata aagagatggc
      721 attaccgatg aatacgggtg cagaagcggt agaaacagcg attaaaactg ctcgccgttg
      781 gggttatgat gtgaaaggaa ttgcagaaaa tcaagcagaa atcatcgctt gtgttggcaa
      841 ttttcacgga cgaacaatgg ctgcagtatc tctctcgtct gatccggatt ataaacgtgg
      901 tttcgggccg atgttaggtg gcatcaaact tgttccatac ggtgatttag aagcattaaa
      961 agctgcgatt acaccaaaca cagcagcgtt tttggttgag ccaatccaag gtgaatctgg
     1021 cattcttatt ccacctgaag gtttcttgga acaggcttat gaactatgca aagagaataa
     1081 tgtgctgttt attgctgatg aaattcaggc aggtcttggg cgtactggca agttatttgc
     1141 aacagaatgg gaaggctttg agccagatat ttatattcta ggtaaagcac ttggtggcgg
     1201 ggtgttccca atctcttgtg tgttagcaaa tcgtgatatt ttaggcgtat tcaatcctgg
     1261 ctcgcacggt tcgacatttg gtggtaatcc attagcctgt gcggtatcta ttgcctcaat
     1321 tgatgtactg ttggaagaaa aacttgcaga gcgttcccgt gagttaggtg aatacttctt
     1381 ggcagagctg aaaaaaatcc aaaatccaat tattaaagaa gttcgtggac gtggactgtt
     1441 tattggcttg gagttacatc aaccagcacg cccattctgc gaaaaactca aagaaaaagg
     1501 cttactctgc aaagagaccc acgatacagt tatccgcttt gctccccctt tggtgattga
     1561 aaaattcaat ttggattggg cattggagaa aattcgggag gtgttggctt aattgtcatt
     1621 ttctctatat tttatcctgc caaatcgcct ttaacccttt ttggcaggaa gcaaaacagt
     1681 tgtaaaatgc tgattttgca aactttttcc aaaaatcaac cgcttgtaaa aggtggcttt
     1741 atgtcaaaca gaacagaaat aacagaccaa aatatccgaa tcccgtttcg ctatgctata
     1801 ttgcctgtga ttattatggt atcgattatg gcggtggcta tcatcaaatt tgaagcctca
     1861 cctcacgttc cgttgcttat tggggcaatt agtgccgctg tgattgcaat ggcacatggc
     1921 taccgttggg agacaattga aaaaggaatt tatagaggca ttcgtatggc tttaccagcg
     1981 attgttatca ttattatgat tgggctaacc atcggagctt ggctaggtgg tggaattgta
     2041 gctacgatga tttactacgg cttgaaattg atctctccgt cgctgttttt agtaactatc
     2101 tcaataattt gtgctattgt gacccttgcg attggtagct cgtggtctac aatgggaaca
     2161 atcggtgtag cggcgatggg gatcgggttt agtctcggca ttccggcacc gatggttgcc
     2221 ggtgcggtga tctcaggagc atatttcggc gataaaatgt cgccactgtc agacactacc
     2281 aatctggcag cagggattac cgaaaccaat ctgtttgaac atatccgcca tatgtttatc
     2341 actaccgtgc cggcgttcct gattgcgtta tctgtctatt tctattttgg tatggaattt
     2401 agagccgaaa atctcgatct tgctaaaatt gaagacatta tgcaggcaat gcaggaacat
     2461 ttcttgattt cgccttggtt gctattagtg cctttattag tcgtggtgtt ggtggcaaaa
     2521 aaagtgcctg ccttaccggc attagctgca gggataattc ttggttggct ctgccacgtt
     2581 tttgtgcaag gcggtgatgt cagcgtagca gtgattactc tgcacgacgg ctataaaatt
     2641 gagagcggcc acgagatgat tgataagctg ttcaaccgtg gtgggatcga gtcgatgatg
     2701 tacaccattt cccttacgat tgttgcgatg acttttggtg gcattgcaga gcaagctgga
     2761 atgttacatt cagtagtgga aaaaatcctt acccttgcaa aatcagcagg tagcttaatt
     2821 agtgctacga ttgtatcggc atttattacc aacgtaacga catctgagca atatatttct
     2881 attttattac caggcagaat gtatataaaa gcctataggg ataagggact aagttcgaga
     2941 aacctttctc gtgcattgga agacggagga acagttactt cggttcttgt accttggaat
     3001 acctgtggtg tttatgcgtt ctcaatgttg caagtgagtg cttttgaata tgcaccgtat
     3061 gcaataatga attggctcat tccactgatt gcgattggct tggcaacctt gaatatcaaa
     3121 attgagcgat tgccaccgga agaattagcc aaagaacctg aggaaattac tctgccaaaa
     3181 cgtggttgtt gtccataatt tatctaaata gtatttaata acaataggtt aagttaaata
     3241 acaagcggtc ggttttatct taaaatttgc aagtttatac ataaatttga tcgcttgctg
     3301 tatagaaagg aaaaatgatg tcataccaac ttttacctaa caccactatc cgtcctgaat
     3361 tgagccgtca ttaccgcttt gatgagcaaa ccctggtgca aaatctgata gaacaagcac
     3421 attgtgatga acaggctgat aacattaaaa agctcactac ccaattagtc ggtaaagtcc
     3481 gaactgcacg ccagaaagca agcggggttg atgcgttaat gcacgaattt tcactctcca
     3541 gccaagaggg ggtggcgttg atgtgccttg ccgaagcatt actacgcatt cctgacaccg
     3601 ccactgcgga taaattaatt cgagacaaaa ttgccaaagg ggattggcgt tcacacaccg
     3661 gcaacagccc ctctctgttt gtgaatgcag cggcgtgggg cttggtgatt accggcaaat
     3721 tggtttcaac ccacagcgaa agctcactct catcagcact ttcacgcctg atcgccaaag
     3781 gcggagaacc gctgatccgc aaaggtgtgg acgtagcaat gcgtatgctc ggcaagaaat
     3841 ttgtaacggg cgaaaccatt caacaggcga ttaaaaacgg cgaaaaacgc ttcgcaatgg
     3901 gttatcgtta cagctacgat atgctgggcg aagcggcact caccgccgaa gatgccaaac
     3961 gctattacaa cgactatgtt gcctctattc acgctgtggg tgccacctcg aaaggcttgg
     4021 gcgtgtataa atcctcgggt gtgtcggtca aactctccgc cattcaccct cgttattccc
     4081 tttcccaaca ccaacgtgtg atggacgaac tctatccacg tctgaaagaa ctgttcttgc
     4141 tggcgaaaaa gtatgacatc ggcttgaaca ttgatgccga agaagccgac cgcctcgaat
     4201 tgtcgcttga tttgatggac agactgcttg ccgaccctga tttggcaggg tttaacggca
     4261 ttggttttgt ggtgcaggcg taccaaaaac gttgcccgta tgtgatcgag catttaattg
     4321 agaccgcccg taaacataat cgccagctaa tgattcgctt ggtaaaaggc gcatattggg
     4381 acactgaaat caagcgggcg caaatggacg gtgcagaggg ctatccggtc ttctcccgta
     4441 aggtgcatac cgatttgaac tacatcgttt gtgccaaaaa attgctggcg gcgcaagatg
     4501 tgatctatcc gcaatttgcc acccacaacg ctcaaactct cgccaccatt taccacttgg
     4561 cacagggcaa acgttttgag tttcaatgct tgcacggtat gggagagagc ttgtacgacc
     4621 aagtggttgg cagcgataat cttaacgtgc aatgtcgcat ttatgcccct gtcggtactt
     4681 atcaaaccct gcttgcctat ttagtacgtc gcttgttgga aaacggagcg aacagctcat
     4741 ttgttagcca aattgtggat gaaaatctca gtgtagatga tctggctcaa gcccctgttc
     4801 aaaaagcaga actgaccaat ggcactatgc acccgaaaat tccattgcca gtcgatttat
     4861 ttgacgacaa tcgtgttaat tccaaaggct atgatttaac tgatgcagta agcctacaaa
     4921 atttagaaaa tgccctcaat gaacttacca aacagcatta ccgtgctgaa ccacagctgg
     4981 caaatgataa tacaagcggt caagaaagcc gaaaaattta caatccagcg aaccaagctg
     5041 aattagtcgg cgaagtgatt gatgccaccg aaaacgatat ggaacaggcg tttgaaagtg
     5101 cggcggcgtt ccaaagtgaa tgggcgaata cttcccctgc ggtgcgtgcc gagtgcttag
     5161 aaaaaatggc ggacttgatg gaagccaata tgccacaact gttcgatttg gcggtgcgtg
     5221 aggcaggcaa aacgctcaac aatgcaattg ctgaagtgcg tgaagccgtc gatttctgtc
     5281 gttattatgc caaagaggta cgcaacaaca ttgaagcata caaaaatccg cgtggcattg
     5341 tagtagcaat tagcccgtgg aactttccgt tagcgatttt tgtgggtgaa gtttcatctg
     5401 cgttggtggc aggcaatgtg gtactagcaa aaccagctga acaaacttcg ttaatggcac
     5461 attatgctgt cagccttttc taccaagcag gtgtgccgaa agcggcgttg caatgcttac
     5521 cgggtagagg aaaaacggtt ggggtggcgt tggtggcaga tcatcgtgtg aacggcgtga
     5581 tttttactgg ttcaacagag acagctaaaa acattaaccg caatttgcac aaaaacgaga
     5641 aaattatacc gcttattgcc gaaactggcg gacaaaatgc aatgattgtt gatagctcgg
     5701 cactgggcga gcaggttgtg atagatgttt taaactccgc atttgactca gcagggcaac
     5761 gttgttcggc attgcgtgtg ctgtatctgc aacgtgatgt tgccgatcac attctcacaa
     5821 tgctcaaagg agcaatggcg gagttgaaag ttggtcttcc acaacactta actaccgatg
     5881 tcggaccagt aatcgataaa gtcgcacaac aacgcttgct cgatcatatt gaaaatctca
     5941 aaaaatcggc gaaaagttac tatcaggtgg ctatctcctc tgaaattgcc gaaaatggta
     6001 ttttcgtacc gccaacgctg ttagaaatag atcatatcag ccagcttaaa cacgaagtat
     6061 tcggaccggt gctacacgtt atccgttttg atgcggataa actcgaccaa gtgattgccg
     6121 acataaactc cacaggtttc ggtctaacca gcggtttgca tagccgaatt gatgaaacgg
     6181 tggatttatg gttgaaatct gtccacgctg gaaatctgta tgtaaaccgt aacacggtag
     6241 gggctgtggt cggcgtacag ccattcggtg gaatggggtt atcaggaact gggccgaaag
     6301 ctggcgggcc gctctatcta caacgtttag taaaccgcca agaatggaca ttgaacggtt
     6361 tacagggcaa tgcacaagcg gtcgattttg acttaaattt tgcaatccgc aaggttctaa
     6421 gtggagctga gcagcaaacg gcgttagatc tggccaaaag ccttgcacgc cgctcgccac
     6481 tcggaaaaac ctacccaatg cagggtatta ccggcgagaa aaacgagatg attttcgtgg
     6541 ctcgcccaca gattgggatt agcaaaggta atttggcttc acaggtgcaa gccttgattg
     6601 ccattgtaac ggtcggcagc caagcggtgg cagaaaaatc aagcgagctg gcaaaacacg
     6661 cctctgcctt tggtaagaaa ttacaggtgg tggatgattt caacagtctc gatcacctca
     6721 gcacactcat tgtgcttgac ctgctttcta gtgaggaaaa attgcatcat gccgaacgca
     6781 aaggggcgat tttgacctac atcgaagggc tggatttagc gctctcactg ctgccgttgg
     6841 tacacgagaa agcaatcagc atcaacaccg ctgccgcagg gggaaatgcc agcttaatga
     6901 gtgaaatgga ttaagcaaca aacaaaagag tataagaggg cagatcacaa tgatctgcct
     6961 ttttatttta aggggctgtc ctagataacg actaaaactt ccatttaggt taagataacc
     7021 ctatgagaaa aagtcgtcta agtcagtaca aacaacataa actcatagag ctgtttgtag
     7081 caggcgtaat cgctcgaaca gccgcagagt tagtgaatgt aaataaaacc accgcagcct
     7141 attattttca ccgtttgcga ttgctcatct atcaacatag ccctcatttg gaaatgtttg
     7201 agggagaaat tgagattgat gagagctatt tcggcggtca tcgcaagggt aaacgaggtc
     7261 gtggtgcagc aggcaaaacc gccgtattcg ggcttttaaa gcgtgacggc aaggtttata
     7321 ccgtagtagt gccgaacaca caatctgcta cacttttgcc gattattcgg gaaaaggtga
     7381 agcccgatag ccttgtttac accgattttt atcgaagcta tgatgtgctt gatgtgagtg
     7441 aatttaacca ttttcgtatc aatcacagca cacacttcgc agaaaatcaa aatcacatta
     7501 acggaattga gaatttttgg agtcaagcaa aacgtcattt acgcaag
//
LOCUS       DANMGB010000120         7538 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.120, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000120 DANMGB010000000
VERSION     DANMGB010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7538
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.120"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..80
                     /locus_tag="PXG19_001862"
     CDS             <1..80
                     /locus_tag="PXG19_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HDL6067140.1"
                     /translation="EWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(81..968)
                     /locus_tag="PXG19_001863"
     CDS             complement(81..968)
                     /locus_tag="PXG19_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL6067141.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(994..1139)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(1316..2326)
                     /gene="mglC"
                     /locus_tag="PXG19_001864"
     CDS             complement(1316..2326)
                     /gene="mglC"
                     /locus_tag="PXG19_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL6067142.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(2340..3839)
                     /gene="mglA"
                     /locus_tag="PXG19_001865"
     CDS             complement(2340..3839)
                     /gene="mglA"
                     /locus_tag="PXG19_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL6067143.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(3911..4900)
                     /gene="mglB"
                     /locus_tag="PXG19_001866"
     CDS             complement(3911..4900)
                     /gene="mglB"
                     /locus_tag="PXG19_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6067144.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
     gene            complement(5175..6167)
                     /gene="mglB"
                     /locus_tag="PXG19_001867"
     CDS             complement(5175..6167)
                     /gene="mglB"
                     /locus_tag="PXG19_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6067145.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
     gene            complement(6252..6665)
                     /locus_tag="PXG19_001868"
     CDS             complement(6252..6665)
                     /locus_tag="PXG19_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL6067146.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            6785..7072
                     /locus_tag="PXG19_001869"
     CDS             6785..7072
                     /locus_tag="PXG19_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6067147.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            complement(7118..>7538)
                     /locus_tag="PXG19_001870"
     CDS             complement(7118..>7538)
                     /locus_tag="PXG19_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL6067148.1"
                     /translation="AYLDLDLSPYFNSGVLLINNILWKKYSVCDELVTINEKIVNLTY
                     GDQDALNIYFKGGWGALPIEYNYQVDAILELVLRREQEELARKNGYLDVIPKIIHYTS
                     KFKPWKKELHTMQISTRKKYWFYYHLEWNDILEQHQK"
BASE COUNT         2266 a         1643 c         1302 g         2327 t
ORIGIN      
        1 gcgaatggcg ttttaatcac agtgacttaa aatctcaaat attcctttta aaacaattgg
       61 ttaaaggggg gttaggttag ttatctagga cagcccctaa aagtaatata accgatattt
      121 aggcctgact tttcaaataa ttgaatatct ttattcgctt ttaaagcaga caaatctgac
      181 gggttcggat aaggcatcgc ttggcattcg ttcttctcca atttagctaa acgtactgag
      241 gcatcgggcg taatactaaa tacaaggcga tctatcttcg cttttccttc ccaatagtgt
      301 tcaaatgctg taaatcttac cgctgcgtcc ttttggtaac catagaactg gaatgcacct
      361 gtgcctatag gttctaaatc taatttttcc ggcgtacccg ctatttgcat tttatttgca
      421 tattccgcag aaaagatcgc cataaaatcc atagctaaat tagcaagaaa gggggcattc
      481 ggttcagata attcgatttt taccgtgtaa tcatctactt ttgttacatt tttgatgatg
      541 ttttgcatat tcattccgta gaaaaactca tagttaccgc cggacaattt gtgatatgga
      601 ttcgtcttat caaactgacg gttaatcgaa aaaataacat catcagcatt aaaataacga
      661 ctaggggtaa aacttttatt actctggaac tgcacattct gacgcaagaa aaaagtataa
      721 atttttccgc cttcactgat ttcccatcgc tctgccagag aaggagtgag gttagtggta
      781 cctttttcaa aatcaatcag gcgattatag attgcttgcc cgacatcaag agtagctcca
      841 tctgttgcaa tctgaggatt caatgctgcc ggagatgatt ccaaacagta agtaaaagat
      901 ttaggtgctg cgaaagcaga acctgtaaat gctaaagaaa taagtgcaag ttgtgtcagc
      961 ttgttcattg tcatatcctt aaatgttaag caataaaaaa ccctttcaaa agttgccttc
     1021 cgaaagggtt agaattgggt ttgcgatttt ggattgcgtt tgccatttca ggttttcgga
     1081 agatatcttc cgaacacgcc aaatgcccga aagattaatc ggtcaaatgg tagtgatgat
     1141 gtttaacgca atagctcata atattctcca aaattgaatg tttaggaatt tacgcttttt
     1201 aaaaatcaat tgcaaacgtt ttctttaaaa ttttgtaaaa aattcaacat ttttcaccgc
     1261 ttgtatcgta cctaggagca aatggcgatt tgctcctagg tttccaagca ataggctatt
     1321 ttttcttcgc atatttaagt gagtcaatcg ctaccgccaa gataatgatg ccacctttaa
     1381 taatatattg ccagtaaggg tttactccaa tataggttaa gccgtagttg ataacggtga
     1441 agattaacac ccctgttact acaccgatga tagtacccac accaccggca aaggataccc
     1501 cacctaccac acaagcggca atggcatcca tttcatacat aaagcctaag ttgttggttg
     1561 cactaccgat acgacctgct tctaacatac cgccgaaggc atagaagatg cctgaaagca
     1621 tataaatacc catcaggtta agcggtacgt ttacaccgga aactcgtgct gcttcagggt
     1681 tgccgccaat agcaaatacg tttttaccga agcgggtttt attccataac gtccacataa
     1741 taatggtagc aatcacggca taaatagtga tgtaggatag cctaaagtcg ccaaagcgga
     1801 agaagccttg tgcaaaggtt gagaaatcat cgctaaagcc tgcaattggc gatgagccta
     1861 ctgcatcgta gtaaagcgag ttgataccat acacaataat cattgttccc atcgtggcaa
     1921 taaacggtgt tacgttgagg taagccacca caaagccgtt aaataaacca atgacagcac
     1981 cgatggcaca cacggttaat acaaccacag gaatcgggat ttccgagagg tttgggaata
     2041 ccttgttcat attttccatt gattggagca aggtggcgga aattaccgct gccaagccca
     2101 cttggcgacc ggcagataag tctgtccctt gtgttacaat caagcctgca acccctaatg
     2161 caataatcaa acgcacagaa gattgcgata aaatgttact gaagttacgc aagctcaaga
     2221 aacttgggtc ttgcacaata atcacaataa gtaagattaa taatacgaag taaatcgcat
     2281 tttgtttaaa aaaatcgagt gttctatttt gttgtaaagc agacatactt cactccttgt
     2341 tataaatatt ttgctgcgag ttgcaagatt tcttcttgcg aggtgtgagc ggtttcgaca
     2401 atacctgcaa ctttcccgtt actcatcact aaaattcggt ctgtgacccc aagcaattcc
     2461 ggcatttccg atgaaatcat aatgatgcct ttatctttat tcgccagctc taaaatcaac
     2521 tggtaaattt caaattttgc cccgatatcg ataccacggg tcggctcgtc aagcatcaag
     2581 atttcaggct gggttaacaa ccaacgcccg ataatcactt tttgttggtt accgccggaa
     2641 agtgagccaa tatgcgtttg atgcgatggg gtttttacat tcatcgaatc aattacccat
     2701 tgggtatcgc ttttcatttt tttattgctc agtaagccga acttgcctag ataagacttc
     2761 atatttgaaa tcagagagtt aaactcaatg cttaagttgg cataaatccc tgttgaacgg
     2821 cgttcttctg taaccaatgc aaagccgtta ttaatcgcat caaaagcgtt gcggttattg
     2881 atttctttat cgtttagtcg gatagtgccg cctgctttct cccgtacacc gaaaatggtt
     2941 tcaacaatat cagtccgttt tgctccaact aagccggcga tgcctaaaat ttcccctctg
     3001 cgtaagctaa agctgacatc ttgaatagag ggttgatttt ttgccgttaa atgctcaact
     3061 tcaagaatca cttctttcgg cagattggtt ttttcaggga aacgctgggt cagctcacgc
     3121 cctaccatca ttgaaaccac ttgatccatt gaggtatctt taattgcaac ggtgtttacc
     3181 catttaccgt cacgcaaaat ggtaatttca tcacaaattt taaaaatttc gtccattttg
     3241 tgtgaaatat agataatgcc acagcctctg tctttcagtt tttggataat tttaaataaa
     3301 tgctcgactt ctttttctga aagtgacgaa gttggttcgt ccataatcac aattttggca
     3361 ttgtaagaga aagcttttgc aatctcgatc atctgcattt gtgaaaccga taatttggct
     3421 actttatcac gtggatcaac atcaatatct aattcatcaa aaatcgcctt agtatcacga
     3481 tacattttat cgtgatctac aaaaggccct tttagtgggt aacgacctag ccataagtta
     3541 tccattaccg tcacttgttt tactaggttc aactcttggt gaaccattga gatcccattt
     3601 tctaacgcct cttttgaggt cttaaaattc accggcttgc caagaaagag aatatctccc
     3661 tcatctttag cataaatccc aaataagcat ttcagtaacg ttgatttacc tgctccattc
     3721 tctcccatta aggcgtgaac actatgggat ttcaccgtta agttagcatt atctaaggct
     3781 tttaccccgg gaaatgactt gctaacattt gtcattgtga gtaaaacttc acctgtcata
     3841 tctcacccct gattacatcg aaaaatcgaa aaaaagcacg ggtatccatc acccgtgcta
     3901 aaagcgtgaa ttattttaaa aattcagata agttgtcttt atcgacacca acgtaaggaa
     3961 tacgcaccac acggttttcc aatttccatt gtgtaccagc aactgcatct ttaccgtctg
     4021 ctaagttagc agaaagctga acaaccgctt taccttggtt tacaccatca tttaataccg
     4081 taccggctaa ttcacctttt ttgattaatt gaagtgcttc tggcaatgca tctacaccga
     4141 agattggtaa ttttctaccg tgagctttgg ttgcttctaa tgcacctaac gccataccat
     4201 cattattaga aataattact tcgatgtctt tcgctttacc acttgataac caagcatcca
     4261 ctttatcttt agcttgggct gcatcccata atgctgcgtc cataaagatt tgctcactgt
     4321 cgataccttg tgcttttaag ctttctacca catatttagt acgtgcttcc gcatcagggt
     4381 gacccggctc accttttaat aaggcaaatt ggattttacc gtctttattc aagtctaatt
     4441 caggatgggc tttccactgt tttgcaatta actcaccttg aataatgcct gactctttcg
     4501 gctcagtacc tacataataa gctttcggat agctatcaat cgcagctgca cccgggtctt
     4561 tattgaagaa caccacaggc acatcttcac tttttgcttt ttgaataatt gttttataag
     4621 ctgatggatc cactaagtta attgctaatg ctttaacccc tttagaaagt aatacatcaa
     4681 cttggtcgtt ttgaatagat tgcgtatttt gcgagtcatt cattaataac tcgacttttt
     4741 gtgttttacc ctctttttcg atttctttac gcattaatgc cataaagtta tcgtcatatt
     4801 tataaattgt tacaccaata cggttttcag cttgagctgt actgatcgtt gcacctaatg
     4861 cgactgccat tgccactgca cttaatactg ctttcttcat agtagatcac ctcttttatg
     4921 tgtttatagg gaaatgaatt gcttaccata agcaacttgg tgcaaagtat aactaatttt
     4981 aaaaaaacaa tccgtgatca ttctcacaga attaagacaa agtggagaaa tttttaattt
     5041 taagtataaa atttgaatat tcgctctatt caaatctgtt ggaagaaaag agaaaggatt
     5101 tgcaagattt tactgaaaaa tgaccgcttg ttatcatcaa taaggggcgt atttataacg
     5161 ccccgctcct ccatttaagg taaaaattgc cctaaatttt ccttatcaat accaatatgt
     5221 ggaagataaa tcgttttaga ggaatggctt tcccactgcg tatctttcag cgcaggctta
     5281 ccttgtgcca aattagatac caatttcacc accgctttcg cttgtgcaga gctatcattt
     5341 aataccgtgc cggctatttc cccttttttc attaatgcta acgtctcagg caaggcatca
     5401 ataccaaaga tcggcaatct tttctcgtgt gcatttaacg catctaaagc accaattgcc
     5461 atttcatcat tgtttgaaat cacaacttca atctcagctg cacggttttc caccagccac
     5521 tcattcattt tattgcgagc caatgttcta cgccatctcg ccgtgtcact gtaaatttct
     5581 tctgcctgaa caccttgttg attaagcgat tcaaccacag cttgagaacg ctcagcgctc
     5641 acatcactcg gctcgccctt aagcaataca aattgcaatt tcccgtcttt atttagatcg
     5701 aaatcggggt ttgatttcca cactttcgca attaattccc cttggattct accggcctct
     5761 ttaggatcag cgctcacaaa gtacgccttt tcgtaacttt ctaacgcttg tttactcggt
     5821 gtgcggttaa aaaagacaac cggcacatta taagccttcg ctttttccac aatagttttc
     5881 gactcatttg cattcacaat attcaccgcc aacacacgca ttttatgctg aagtaaggtt
     5941 tcaatttgcg ctaattgctt cacttgggaa ttttgtgcat cattcataaa ccacttcaac
     6001 ccagcgaagc ctttcgcctc gttttgcata tccttacgca tttgagtcat aaaatggtca
     6061 tcatatttgt aaatcgttac ccccactctg ctttcagatt gtgcgtaact tagattcaca
     6121 ccgcaaataa cagaaagtgc aaaagcactc aagattgtac gcttcataga atgtccctct
     6181 tgctatgcca aatatgaacc aattcaagca tagcgaattt tgtgtaagga aaccgtgatc
     6241 tagttcacaa tttagccaga tttaacccac ctcaggcgta aatgatcgta cacccaatta
     6301 aaaactaccg aataaactaa tacaaataag gtcattccaa tatccatcac aaacgcctgc
     6361 caccagccga tatcgagcat atacattacc aatgggatag taaaaaccag caaaccgccc
     6421 tcaaaaagga atgaatgcaa aatacgaatg cctaaaccac gttgcactcg ctcaccggta
     6481 aacaccttat caaaacccca gttaaaaata acattccaca ccattgcaat caccgaaatc
     6541 atcacaatca ctgcggttaa atcaaccata cgatgagaag tcagccaaga agttaagata
     6601 accgtaaaaa taatagcgaa acattcaaat aacagcgcgt gaaacacacg ctcccaagcg
     6661 gtcatttttc ctccaaactt tgcaaaatac caactaaatc aaataatcgt tcactgatga
     6721 ttgcaggtta cgcaatttag ttttaaagta cctacattat tcatcaattt agaaggatta
     6781 gccaatgaaa aacgataaac cgattgaatg cgaaggctgt aacacatttg atgtaggttc
     6841 tattttagat aacagcgaaa cagtcgctac tattcagcgc acttatgaaa gcgaaaatga
     6901 agctaaagcg gcacttgaaa aattcactca aaaagcccgt gatgtcgaat ctgaaccctg
     6961 tgaaatcagc agtgaaatca ccccgattga aagcggtttt gaactggttg ctcacttcaa
     7021 atttagctgc caagcagaag tggttatttt tcaattagga acacgtttct aatacaaaaa
     7081 gctgattcaa acacttgaat cagcttttgt atgatagcta tttttgatgt tgttccaaaa
     7141 tatcgttcca ctctaaatga tagtaaaacc aatatttttt acgcgtagat atttgcattg
     7201 tatgcagttc ttttttccaa ggtttgaatt tactcgtata gtggataatt ttcggaatca
     7261 catctaaata gccatttttt ctcgcaagtt cctcttgttc tcttcttaat actagttcaa
     7321 gaattgcatc aacttgataa ttatactcta tcggcaatgc tccccaaccg cctttaaagt
     7381 aaatattgag agcatcttga tcgccataag ttaagtttac aattttttca ttgatagtaa
     7441 ccaactcatc acatactgaa tacttcttcc aaagtatatt attaattaat agtaccccag
     7501 aattaaaata agggctgagg tctaaatcaa gataagcc
//
LOCUS       DANMGB010000121         7478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.121, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000121 DANMGB010000000
VERSION     DANMGB010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.121"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            20..520
                     /locus_tag="PXG19_001871"
     CDS             20..520
                     /locus_tag="PXG19_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6067149.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            808..2202
                     /gene="fumC"
                     /locus_tag="PXG19_001872"
     CDS             808..2202
                     /gene="fumC"
                     /locus_tag="PXG19_001872"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL6067150.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2329..2439
                     /locus_tag="PXG19_001873"
     CDS             2329..2439
                     /locus_tag="PXG19_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL6067151.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2544..3794
                     /gene="lysA"
                     /locus_tag="PXG19_001874"
     CDS             2544..3794
                     /gene="lysA"
                     /locus_tag="PXG19_001874"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL6067152.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3808..4437
                     /locus_tag="PXG19_001875"
     CDS             3808..4437
                     /locus_tag="PXG19_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL6067153.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4508..5953
                     /gene="tldD"
                     /locus_tag="PXG19_001876"
     CDS             4508..5953
                     /gene="tldD"
                     /locus_tag="PXG19_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL6067154.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            6017..6898
                     /gene="prmA"
                     /locus_tag="PXG19_001877"
     CDS             6017..6898
                     /gene="prmA"
                     /locus_tag="PXG19_001877"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL6067155.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7073..7148)
                     /locus_tag="PXG19_001878"
     tRNA            complement(7073..7148)
                     /locus_tag="PXG19_001878"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7113..7115),aa:Trp,seq:cca)
     gene            complement(7214..7290)
                     /locus_tag="PXG19_001879"
     tRNA            complement(7214..7290)
                     /locus_tag="PXG19_001879"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7254..7256),aa:Asp,seq:gtc)
     gene            complement(7301..7416)
                     /gene="rrf"
                     /locus_tag="PXG19_001880"
     rRNA            complement(7301..7416)
                     /gene="rrf"
                     /locus_tag="PXG19_001880"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2230 a         1667 c         1649 g         1932 t
ORIGIN      
        1 cttacatcgg agtacatata tgcaaacaat caatgaaatt aaagaagaaa tctaccctat
       61 atttgagcct atcattggaa caattcggct aaaaacctac ttttcctact acgcagtttt
      121 taaggatgga ttgatgattg cattgtatca aaatggagca acttatttac gtattgcgaa
      181 aaaagatatt gaatacattc gtcagtatcc taaaacctgt atcttatgcg atgaaaaaat
      241 tggtatacaa agtagaaaat ttcattatat tccgcaagtt ctcatagatg atacaccaaa
      301 atttagctcg ctactctttg gaattataga ggaactccga acggagaagt acaaaataag
      361 ccaaaagcga gctacacaaa tccgaaacct accaaatatg aatttaaagt tagaaagaat
      421 gttgaaaaaa atagggattc attccattca tgattttact caagaagggt atatgtcaac
      481 ttttatcaaa ctgattctcc accgaagact tactgtttaa gctaaacgga gctttaaatc
      541 accaatatat ttacaccttc acagatcaac aaaaaaggga actaatgcaa gaagcaaatc
      601 aagcgctata taattcaggc ctaagaaaaa gatttaacgc cctgtagtta aataatgtga
      661 tccaaatcat aaaatataaa aaaaccaata aggaattgca attcgcagtt cctttctttt
      721 tcttttatat gctagtatca ccttatacct ctaaattatt agtgcctact gattttcaat
      781 taatccaaca atttaggaga gcgcatcatg gaattccgta tcgaaaaaga cacaatgggc
      841 gaagtgcaag ttcctgccga taaatactgg gcggcgcaaa ccgagcgttc acgcaataac
      901 ttcaaaatcg ggccggaggc atcaatgccg gcggaaatta tcgaggcgtt tggctatctg
      961 aaaaaagcgg ctgcctatgc taatcacgat ttaggcgtac tagcggtcga aaaacgggat
     1021 ttaattgcaa aagcctgtga tgaaattttg gcgaacaaac tcgatgatca attcccgctg
     1081 gtgatttggc aaaccggctc gggtacgcag tcaaatatga acgtgaatga agtcgtggca
     1141 aaccgtgcac acgtgttaaa cggcggcaag ctgggtgaaa aatcgattat tcacccgaat
     1201 gatgatgtga ataaatccca atcttctaac gacacctacc caactgcaat gcacatcgct
     1261 gcttacaaaa aagtggtgga acacacccta ccttgtgtga aacgtctgca aaaaacctta
     1321 gcggaaaaag ccgaagcctt taaagatgtg gtcaaaatag ggcgtactca cttaatggat
     1381 gctaccccgc tcacgctcgg tcaagagttc tctgcctatg cagcacagtt agcattcggc
     1441 atcaaagcat tggaaaacac cctgccacac ctgcgtgagc tggcactcgg cggcacagca
     1501 gtcggcaccg gcttgaatac cccgcaaggt tacgatgtga aagtggcgga atacattgcg
     1561 aaattcaccg gtttaccgtt cgttaccgcc caaaacaaat ttgaggcatt agcgactcac
     1621 gatgcgattg tcgaaaccca cggtgcatta aaacagcttg cggtgtcgct ctacaaaatt
     1681 gccaacgatg tccgtttatt agcctccggt cctcgttcag gcattggcga aattctgatt
     1741 ccggaaaacg agccgggttc atcaattatg ccgggtaaag taaacccaac ccaatgcgaa
     1801 gcaatgacaa tggtatgtgc ccaagtatta ggcaacgatg taaccatctc ttttgccggc
     1861 acgcaagggc atttccaact gaatgtctat aaaccggtga tggcgtacaa cttcctgcaa
     1921 tcggctcaac tgctaggcga tgcgtgcgtg tcgtttgacg aacactgtgc agtcggcatt
     1981 gaaccgaact accctcgcat taaacaacag ctcgaccaat cgctgatgtt agtgaccgca
     2041 ttaaatactc acattggtta tgaaaatgca gcgaaaatcg ccaaaactgc ccacaaaaac
     2101 ggcacaacac tgaaagaaga ggcgattaac ttaggcttag tcacggcaga acagttcgat
     2161 gaatgggttc gtccggaaga tatggttggc agcttgaaat aagcccaacc cttctcttgt
     2221 aatctgattt acacctcaat ctaccggtaa gattgaggtg taatttttta tagcgagggt
     2281 actgattttg ttttagaatg aagcatcatt ttttaagcgg aaaaacctat gaaaaaactc
     2341 attttaatcg cattagttac tactttaggc ttaagtgctt gtggggtcaa aggcccactc
     2401 tacttccctg agcaagcccc taaacatgaa caaaaataag cattgcaagc ggtctgtttt
     2461 ggctaaaatt ttgcaaattt ttgtgaaaaa atgaccgctt gttgcctctt ttctttcaaa
     2521 atcccaaaca caacggactt tcaatgaacc attttgaata taaaaacaac caactttttg
     2581 ctgaagaagt cgctattgcc gatattatcg agcaatacgg cacgccagct tatgtttact
     2641 ccagatctac ccttgaacgc cactggcacg cattcaataa tgcgtttggc tcgcacccac
     2701 atttagtttg ctttgcagtc aaatccaact ctaacattgc cttgttaaat gtaatggctc
     2761 gtctcggttc aggctttgat attgtctctc aaggcgagtt ggagcgtgtc ttagctgccg
     2821 gcggcgaagc ctctaaagtt gtcttttccg gtgtggcaaa atcgcacagc gaaatcaaac
     2881 gagcattgga agtcgggatt cgttgcttta acattgaatc ggtttccgaa cttcaccgca
     2941 ttaaccaagt tgccggtgaa ctaggcaaaa tcgcaccgat ttcactgcgg gtaaacccgg
     3001 atgtggacgc ccacactcac ccatacattt ccaccggttt aaaagaaaac aaattcggcg
     3061 tgagcgttac tcaagcccgt gaagtgtatc gcttagccaa aaccttaccg aatgtgaaaa
     3121 ttaccggtat ggattgtcac atcggttcgc aattaaccga attgcaacct tttttagatg
     3181 caacggatcg cttaatcatc ttaatggagc aactgcgtga agacggcatt gagctacacc
     3241 acttagactt aggtggcggt ttaggcgtgc cttacaacgg cgaagagcct ccgcatccga
     3301 ccgaatatgc caaagccttg ctggaaaagc tcaaaggcta tgaaaactta gaaatcatta
     3361 ttgaaccggg gcgtgccatt accgcaaatg ccggtatttt agtgacgaag gtggaatact
     3421 tgaaacaaaa tgaagatcgt aattttgcga ttgtcgatac cggtatgaac gatatgattc
     3481 gcccggctct gtatgaagcc tatatgcaaa ttacggaagt ggataaaacc ttaaaccgtg
     3541 acaaagctgt ttacgatgtg gtcggtccga tttgcgaaac ctcggatttc ttaggcaaac
     3601 aaagagaatt ggcaatttct gaaggggatt taatcgctat tcgttctgcc ggtgcttatg
     3661 gggcggcgat gtcttcaacc tacaactctc gcccacaagc ggcagaaatt atggttgatg
     3721 gcaaccaagc ccatttaatt aaagcccgag ccacttttgc tgatttatgg cgtttagaaa
     3781 aattattacc ttaatgagga agaaaagatg aaattatatg gattaaccgg tgcttgttca
     3841 tttgtaccac acgttgccct agagtgggtg aaattgcgtg ccaatcaaga ttatgcgttt
     3901 caagctgtta gccgtgaatt tattaaatcg gcggaatatc tggctttaaa ccctcgtggt
     3961 aacgtaccat tgttggttga tggcgacttg gccctcacgc aaaaccaagc tatcgtccac
     4021 tatttagacg agctttatcc ggaagctaaa ttattcggca gcaaaaccgc tcgtgataaa
     4081 gccaaagcgg ctcgttggtt agcttttttc aattcagatg tgcataaatc attcgtgcca
     4141 ctgttccgct tgccaagtta tgcggaaggc aatgaaacgc tcaccaaaac tattcgccaa
     4201 caatcggctg agcaaatttt agaacaactg gcttttgcga atgctcattt agaaaatcat
     4261 attttctttg gcgaagaaat ttcggttgcc gatgcgtatc tctacattat gctcaactgg
     4321 tgtcgcctac tagggttgga tttctctcat ctttcccaac tttctgcctt tatgcaacga
     4381 gtggaggcag accaaggcgt agataatgtg cgtgagcaag aaggcttaaa aggttaattc
     4441 accattgttc atttaagacg gtagatttta tgttaaaatc taccgtcttt tatttttagg
     4501 aatcaccatg ctaaatcagg tttcaaacag cttgcttgct ccaagtgggc ttgaattatc
     4561 gcacttaact caagtgttag atcacttctc cggccgtcat attgattatg ccgatctcta
     4621 cttccaactc agccaagacg aaagctggag cttggaagac agcatcatca aagaaggcgg
     4681 tttttatatc gaccgagggt tcggtgtgcg agccatatca ggcgaaaaaa ccggctttgc
     4741 ctacgccgat caaatcacgt taaaacagct tgagcaatgt gccgctgccg cacgttcaat
     4801 cagcccaaca agcggtcaat tatcggtaaa aaatttcaaa aaaacgaccg cttgttctcg
     4861 ctacccggca atcaacccgc tagagaccat cagccgtgaa caaaaggtcg aattgctcca
     4921 tttggtggat aaaaccgctc gaatggcaga tccgagagtg attcaagtga atgcgaatct
     4981 ctcagcggta tatgaagaaa tgttagtggc agcgactgac ggcacactgg ctgcggatat
     5041 tcgcccgtta gtgcgtttat ctgtgtcggt actggtggaa caaaatggca agcgtgaacg
     5101 aggttcagca ggtgccggtg gtcgctttgg tttagattgg ttcttagcac caagcgaaac
     5161 cggctttagc cgtgcggaat cgcttaccaa agaagccgtt cgccaagccc tcgttaatct
     5221 cacagccatt cctgcaccgg caggcacgat gccgattgtt ctcggtgctg gctggccggg
     5281 cattttgctc cacgaagcag tcggacacgg cttggagggt gattttaacc gtaaggaatc
     5341 ttcgctcttc agtggtaaaa tcgggcaaat ggtcacctct gagctttgca ccattgttga
     5401 tgacggtacg gtgccgaata tgcgaggctc aatcacggta gatgacgaag gcgtgccttc
     5461 gcaacgtaat gtgttaattg aaaacggcat tctaaaaggc tatatgcaag acaaactcaa
     5521 tgcccgcctg atgggagttg ccccaaccgg caacggcaga cgggaatctt acgctcattt
     5581 gccgatgcca cgaatgacca acacctacct caccgaaggc aatcacgaat ttgaagagat
     5641 gattgaatcg gtcgaatacg gtttatatgc tcctcacttc agtggtggac aagtggatat
     5701 tacctccggc aaatttgtgt tctccaccgc cgaagcctac ttaatcgaaa aaggcaaaat
     5761 caccaaacct gttaccggtg caaccctgat cggcagcggc atagaagcaa tgcaacaagt
     5821 ttcaatggtc ggcaaaaaaa tggaactcga ccccggcatc ggcacttgtg gcaaagaagg
     5881 gcaatccgta ccagtcggcg tagggcagcc tacagtgaag ttggataaaa ttacggtggg
     5941 gggaagaggg taatctctcc ccgtttgcaa aatataaaga aaatatcacc gcttgtagcg
     6001 ataaaaggaa aacaaaatgg cttgggtaca aattcgttta aacagtacag ataaacaggc
     6061 tgaggaaatc agcgattttt taaccgagat tggagcggtg tcagtgactt ttatggatag
     6121 tcaagatacc ccaatttttg aacctcttcc gggggaaacc cgtctttggg gaaataccga
     6181 tgtggttggg cttttcgatg cggaaactga tatgaatctt atcgtagaag cactaaaaac
     6241 cagcaaattg gtggacgaaa actttgctca caaaatcgag caaatcgaag acaaagactg
     6301 ggaacgggag tggatggata atttccaccc aatgcagttt ggcaaacggt tatggatctg
     6361 cccaagctgg cgtgaagtac cagacccgaa tgcagtgaat gttatgttag accctggttt
     6421 agcatttggc accggcacac acccaacgac ctcgctttgc ttacaatggt tagatagctt
     6481 agatttagaa ggcaaaacgg ttatcgactt cggctgtggc tccggtattt tagctatcgc
     6541 tgcacttaaa ctcggtgcaa aacaagccat cgggattgat atcgacccac aggcgatttt
     6601 agctagtcaa aacaatgctg aggcgaacgg cgtagcagaa aaactacaac tattcttagc
     6661 caaagatcag ccaagagagt tacaagccga tgtcgttgtt gcgaatattc tagccggccc
     6721 actcaaagag ttagcaccga atatcatcac gctggttaaa ccaaacggca atttaggctt
     6781 atccggcatt cttgctactc aggctgaaag tgtgtgtgag gcttatagcg aagcctttac
     6841 gctagaccct gttgtagaaa aagaagaatg gtgtcgtatt acaggccgca aaatctaata
     6901 taagaagccc tgttttaaac agggcttact ttttgataaa ttctactact ctttacctgt
     6961 cttgggaatc gttctcccta aattaattaa cacaagcggt agaaataaca ggaaaattta
     7021 caaattacat aaatgaaaaa agccgactga aatcagtcgg ctttctaaat aatggcaggg
     7081 gcggagaggc tcgaactccc aacacccggt tttggagacc ggtgctctac caattgaact
     7141 acgcccctat tgataggtat tcattttgca cttatagggg cgaattacta ttcgcccctg
     7201 cattaaagat tattggcgga acggacggga ctcgaacccg cgaccccctg cgtgacaggc
     7261 aggtattcta accagctgaa ctaccgctcc taaattaata gattgataat gccctactct
     7321 cacatggcga atcaccacac taccatcggc gttactgcgt tttacttctg agttcggtat
     7381 ggagtcaggt agagccacag cactctggtt atcaatcaaa ttctttcatt tagtcagttt
     7441 actaaaatat agtttatact ttctaataaa ctcactaa
//
LOCUS       DANMGB010000122         7468 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.122, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000122 DANMGB010000000
VERSION     DANMGB010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7468
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.122"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            64..582
                     /locus_tag="PXG19_001881"
     CDS             64..582
                     /locus_tag="PXG19_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL6067156.1"
                     /translation="MQKKLFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIA
                     EIEKTVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNI
                     HRLAPNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLK
                     AIEDLEQELLFK"
     gene            complement(586..659)
                     /locus_tag="PXG19_001882"
     tRNA            complement(586..659)
                     /locus_tag="PXG19_001882"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(625..627),aa:Cys,seq:gca)
     gene            complement(675..750)
                     /locus_tag="PXG19_001883"
     tRNA            complement(675..750)
                     /locus_tag="PXG19_001883"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(715..717),aa:Gly,seq:gcc)
     gene            complement(960..2384)
                     /gene="lpdA"
                     /locus_tag="PXG19_001884"
     CDS             complement(960..2384)
                     /gene="lpdA"
                     /locus_tag="PXG19_001884"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL6067157.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
     gene            complement(2584..4494)
                     /gene="aceF"
                     /locus_tag="PXG19_001885"
     CDS             complement(2584..4494)
                     /gene="aceF"
                     /locus_tag="PXG19_001885"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL6067158.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            complement(4698..7355)
                     /gene="aceE"
                     /locus_tag="PXG19_001886"
     CDS             complement(4698..7355)
                     /gene="aceE"
                     /locus_tag="PXG19_001886"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL6067159.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
BASE COUNT         2131 a         1682 c         1391 g         2264 t
ORIGIN      
        1 ctttaaaata gaagttatat gaaataaaat tcacttaaat tttctttatt gataacatca
       61 accatgcaaa aaaaactttt tatcgcccaa ataaaacaaa acctctcgga attaaatgta
      121 ttttcaacgg ataatatttt tctgaattca ccctatttct cacagcaaac cggtttggtg
      181 agtgtgttca ttgctgaaat tgaaaaaaca gttgagctat tattgaacca aactgaggtg
      241 ttatatagtg aattttacgc tgaaaaattg gttaaacaag ttgatgcatt aaagaatgcc
      301 gtagaaaaaa tccaaagtaa gccagaatca gctcaattcc attcttccta tcaattttct
      361 ccaaatattc atcgtttagc gcccaacaaa cgcttacaag aataccgtaa agcgttacgt
      421 gcattgaacg agaaaattag ctggttagtt gagcaaaatt taaatacgca aaatgaagca
      481 actaaacaaa ccctgcaaaa tcaaattaca gagacagaat atcgcaaaat gaaatgttta
      541 aaagcaattg aagatttaga acaagagttg ctatttaaat agtgatggag gcgtgtcccg
      601 gagtcgaacc gagctacatg gatttgcaat ccagtgcata accgctttgc taacacgcca
      661 taagatttgg aaattggagc gggaaacgag gctcgaactc gcgaccccga ccttggcaag
      721 gtcgtgctct accaactgag ctattcccgc atctgaattc ccacaacatt gcgctgtgga
      781 acgaggtgca ttttacggat ttatcatttt atgtcaatgc taaatttaac attctagatt
      841 caaatgctga aaaaaaactc actattcaat agtttagttt taaaaataat caagcggttg
      901 tattttgcaa aaaatttaca aaatacaacc gcttattttt tagagattaa ataatctgat
      961 taacgctttt tggctttcgc atttggtaag tctgtaattg aaccttcaaa tacttctgcc
     1021 gctaatccta ccgattcgtg taacgttggg tgagcatgaa tggttaatgc gatatcttca
     1081 gcatcacagc ccatttcgat tgcaagaccg atttcgccta ataattcgcc accattgcta
     1141 ccaacaatcg caccacctaa tacacggtga gtatctttat caaaaattaa cttggtcata
     1201 ccttctgagc attcagaagc aatcgcacga cctgaagcag cccaagggaa tttcgccact
     1261 tcgtagttca agccttcttg tttacactct ttctcagttt taccaaccca agccacttct
     1321 ggttcagtat aagcgatgga cggaatgact ttcggatcga agtaatgttt cattcctgca
     1381 atcacttctg ctgccacgtg tccctcgtgt acacctttgt gagctaacat cggctggccg
     1441 acaatatcac caatagcaaa gatgtgtggc acattggtac gcatttgttt atctacacga
     1501 ataaagccac gctcatctac ttccactcca gctttaccgg catcaattaa tttaccgttt
     1561 ggcacacgtc cgatagcgac taataccgca tcataacgtt tagtatcgtt gcaagcctta
     1621 ccttccattg atacatagat accgtcatct ttagcttcta ctgcggttac tttggtttca
     1681 agcattagct tgaatttttt ctcgatttgt ttggtgtaaa tcgctacaac atctttatct
     1741 gcagcaggaa ttacttggtc gaacatttca accacttcca cttctgaacc aagcgcgtta
     1801 tataccgttc ccatttctaa accgataata ccaccaccca taataaggag ttttttcggt
     1861 acttctttta atttaagagc atcggttgaa tcccaaactc gtgggtcttc gtgtggaata
     1921 aatggtagtt gaatcggacg agaacctgct gcgataatcg cattatcgaa cgtgatagtt
     1981 gtaggattgc cgtcacgatc acgagcgact aacgtattcg gaccagtaaa tgcagccaag
     2041 ccttctacta ctgtcacttt acgagcctta gccattcctg ctaagccacc ggttaatttt
     2101 gaaacaacgg cttctttacc agcacgtacc tgatctaaat caatcgttgg ctcaccaaag
     2161 gtcacaccgt tgtgtactgc atttttagct tcttcaatta cttttgcaac gtgtaataat
     2221 gctttagaag ggatacaacc tacgtttaag caaataccac ctaaggttga ataacgctca
     2281 acaattactg tttctaagcc taagtcggca caacggaatg ccgctgagta acctgctgga
     2341 cctgcaccaa gtacgacaac ttgggtttta atttctttgc tcatagtttt tcctcttttt
     2401 attccccccc tttagcaaag aggggtaagg gagatttggc agaatataaa gcgaagtgag
     2461 agagcaatca atcaaacaca aatttctacc aaataattta ttctcttcgt aaattacgtc
     2521 tatcaaatct ccccctaccc ctcttttcta aagagggact tttttaggag gagctttacc
     2581 gaattacatc actaaacgac gaatatctgc caacacgcta ttaatatagc ttaagaatct
     2641 cgcaccatca gcaccatcga tcacacggtg gtcgaatgat aatgaaagcg gaagcattaa
     2701 gcgtggttca aactctttgc cattccaaat cggttgcatt tcagatttag acacacctaa
     2761 aatagccact tccggtgcat tcacgattgg cgtaaagtgc gttgtaccaa taccgcctaa
     2821 acttgaaatt gtgaaacagc caccttgcat atcagatgct gtcaatttac cttcacgggc
     2881 ttttttcgag acttccatta attcgcgaga aagttcgata atgccttttt tgttcacatt
     2941 tttgaacacc ggcaccacta aaccgtttgg cgtatcaacc gcaaccccga tattgatgta
     3001 ttttttcaag gttaaacgtt gtgcatcttc agaaattgag ctgttgaaac gagggaaggc
     3061 ttctaatgca cttgccactg ctttcataat gaagaccaca ggggtaattt tcacgtctaa
     3121 tttacgtttt tccgcttctt tattttgctc tttacggaag ttttctaact cggtaatgtc
     3181 tgtgcgatcg aaatgtgtaa cgtgaggaat cattacccag ttacggtgta agttcgcacc
     3241 ggaaatctta ttgatacggc ttaattcaac ttcttcaact tcaccaaact tgctgaaatc
     3301 tactttcggc cacggtaata aacctaagcc tgcaccgttt gccgcacctg ttgctgccgc
     3361 tgctgttccg ccttgttttt caaatacttg aacagccgtt ttaacgtatg cttgaatatc
     3421 ttctttaacg atacggcctt tacgacctgt accttttact ttgtctaggt ttacaccaaa
     3481 ctcacgagct aaacggcgaa ttaccggtgt tgcgtgtgca tagccagctg aagccaccac
     3541 ttgttcttgg cttaaacctg attggttttg acctgccgga gctgcgtcag ctttcgccgg
     3601 agctgctgct tgtggagcag gagcaggagc tgaagccgct tgagcagccg ccggagccgg
     3661 tgccgcaccc gctacttcaa atttcataat taatgaaccg gttgaaactt tatcacctga
     3721 tttcactaaa atttctttca ccacaccggc aaatggagcc ggaacttcca ttgaagcttt
     3781 atcaccttca accgtgatta aagattgttc ttctgaaaca gaatcaccca ctttaaccat
     3841 aatttcagtt acgtttactt catcaccacc gatgtccggt acatttacat ctttaatcgc
     3901 tgatgccgaa gcttgagctg gagcagcttc cgcaaccggt gtagattgtg ctgtagctgc
     3961 ggaagccgtt tcaaatttca taatcaattt accagttgaa actttgtcac ccacattgat
     4021 taagatttct tttactacgc cggcaaccgg tgcaggcact tccattgagg ctttatcacc
     4081 ttcaacgttg atgatagatt gatccacttc aacgctatca cctactttaa ccataatttc
     4141 ggttacgtta acttcatcgc caccgatatc aggtacattt acttcaacaa cggctgaagt
     4201 tgttgctact ggagcagcag gagctgcttc tgcttttggt gcttcttgag caggagcagc
     4261 atctgctgac tctaaaatta acattggtga accggttgaa actttatcac ccactttcac
     4321 taaaacttct tttaccacac ctgcttcagg agccggcact tccatagagg ctttatcgcc
     4381 ttctacgtta ataattgatt gatctactga aatagtatca ccaactttta ccatcacttc
     4441 agtcacactg acttcatccg aaccgatgtc cggcacatta atttgttttg acattttgaa
     4501 atccttcttg agttaccccc tctcccattg tgggagggac agatttttct ttgtaagaag
     4561 aaaaatcagg gagaagggaa tgcaagcggt tgattttctc aacatttttg caaataaaac
     4621 taataccctc tctgctaaaa gtttctaaac gaaaccttta gctgtctctc tcccatcaag
     4681 ggagagagta ttagaaatta cgcatataat gggttaatac gatctacatt taagccgaat
     4741 ttagtaatag cttccgcaac cactttgttt tcaactgtac cttctttcgc taattgagcg
     4801 agggctgcaa ctactacata acgctcatca acttcgaagt gttcacgtaa gtttgcacgg
     4861 ctgtctgaac gaccgaaacc gtctgtacct aacacgtgat agtgtttact tggtacataa
     4921 gcacggattt gctctgcgta cattttcata tagtcggttg aagcaacagt cggtaaatct
     4981 tgtaacactt gagcaacgta cggtacacgt ggtgtttcag ttgggtgtaa taagttccaa
     5041 cgagccacat ctgctccatc acgacctaat tcattgaatg atggtgctga gaatacatct
     5101 gctgtaatgc cgtagtcatt cgcgagaatt tgtgcagctg cacgcacgtg acgcataatt
     5161 gcacctgagc ttaataattg tacgtgacct ttacctttac cctcaacggt ttcaaattta
     5221 tataaacctt tacggatacc ttcttccgca cctgccggca ttgccggctg ttcggtaatt
     5281 tcatttaagg tagtaatgta gtagaagata tcttcttggt tttcaccata catacgacga
     5341 ataccgtctt gaacaataac cgcaacctca aaggcaaatg cagggtcata agtgacgcag
     5401 ttcgggatta cacctgcttg aatatggcta tgaccatctt cgtgttgtaa accttcaccg
     5461 tttaatgttg tacgacctga agtaccacca atcataaagc cacgagctaa ttggtcaccg
     5521 gctaaccaca tcatatcgcc tacacgttgg aaaccaaaca ttgagtagta gatgaagaat
     5581 gggatcatcg gtaagttgct aacagaataa gaagtcgctg ctgccaccca agaggctgtt
     5641 gcacctaact cattgatacc ttcttgtaac acttggccat cttttgcttc acggtagtaa
     5701 gctactaaat cacggtctga cggtacatag ttttgaccat gtgggttata aataccgatt
     5761 tgacggaata aaccttccat accgaaagta cgggcttcgt ccgcaataat aggtacgatt
     5821 tgctgaccga tatttttatc tttcaataaa gtattcaata cacgagagaa cgccattgtg
     5881 gttgaaatac cacgtggttg ctcatccaat aatgcttgga attcgcttaa ttcaggcact
     5941 ttgaaatcaa ccgtaaattt cggtttacgt acaggcacat aaccgtttaa ggctttacgt
     6001 tgtccgtgta agtagttgta ctcttcagaa ccttcaggga atcttacata ctctaggctt
     6061 tctacttgct catcggttaa tggtagctcg aagtagtcac ggaagccttt taagctgtct
     6121 aatgacattt ttttcgattg gtgagcagta tttttacttt ccgcttcagg aatacggtag
     6181 cctttcactt ggtgagctaa aattacaact ggtttgtccg atttttgtgc ttttgcatag
     6241 gctgcataaa gtttttcaga atcgtgtgca ccacggcgta atgcccaaat ttcatcgtct
     6301 gtcatatcag caactaatgc tgcagtttca gggtaacgac cgaagaagtg ttcacgaacg
     6361 taagcaccat ttttggattt gaaggttaaa tagtcaccat caagcacttc catcattaac
     6421 tgtttaagtt tgcctgaagt atctttttca agcagtttat cccaaccact accccataac
     6481 actttaatca cttcccagcc acaaccggta aagagtgctt ctaattcttg cacgattttg
     6541 ccgttaccgt taaccggacc gtctaaacgt tgtaagttac agctaatagt gaagattaag
     6601 ttatttaatt tttcacgacc ggcgaatgat aatgcacctt tagattcgat ttcatccatt
     6661 tcgccatcgc ctaagaatgc atatactttt tgagccgaag tatcttttag accacggttt
     6721 tctaaatatt ttaagaaacg agcttggtaa atagcattta ccggtcctaa acccatagat
     6781 acggtagaga attgccaaaa ttcaggcatt aatttagggt gtgggtaaga agataaaccg
     6841 tctgtaaatg cttcttgacg gaagttatcc atttgttctg cggtaatacg accttctaag
     6901 aacgcacgac catacatacc cggtgctgcg tggccttgga agaacactaa atcaccacca
     6961 tctttttcgg ttggtgcttt gaaaaagtgg ttaaaacaca cttcatacat agttgccgca
     7021 gattggaaag ttgaaatatg accacctaag tcaagatctt tcttctggct acgaagtact
     7081 gccgcaatcg cattccaacg taccgcagaa cgaatacgac gttcgatttt atgatcaccc
     7141 ggataagctg gctgctcgga aacagggata gtattgacat aatctgttgt tacgcctgtt
     7201 ggtaatgcca cgccacctgc acgagcttgg ctaataactt gttcaatgat aaattgagcg
     7261 cgctctaaac cttcttcacg aattaatgaa tcgagtgatg ctaaccaatc ctgagtttcg
     7321 attggatcta cgtcatttct taagttctct gacatagtat tcttccttat aaattaacga
     7381 ttgaggtgat aaataacaaa attttaacaa attttgtttg tttggtgatt tttagaccaa
     7441 ttcttatcga aaaaatttca gtaaaaca
//
LOCUS       DANMGB010000123         7447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.123, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000123 DANMGB010000000
VERSION     DANMGB010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.123"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1995
                     /locus_tag="PXG19_001887"
     CDS             <1..1995
                     /locus_tag="PXG19_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6067160.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXG19_001888"
     CDS             1995..3287
                     /locus_tag="PXG19_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL6067161.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXG19_001889"
     CDS             3290..4417
                     /locus_tag="PXG19_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067162.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXG19_001890"
     CDS             4419..5081
                     /locus_tag="PXG19_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6067163.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXG19_001891"
     CDS             5200..5550
                     /locus_tag="PXG19_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL6067164.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXG19_001892"
     CDS             5563..6624
                     /locus_tag="PXG19_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6067165.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
     gene            6624..7214
                     /locus_tag="PXG19_001893"
     CDS             6624..7214
                     /locus_tag="PXG19_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL6067166.1"
                     /translation="MVTINSKHGKALGGLLPPVSYDPNGRWLALSLEVEGRELDRIDA
                     RAKTLIDAVDVSTGIFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQ
                     VAKELGYCIKISEPQPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMA
                     GDALMGRYKDPILESLLEEVKPAFSRVWVRYLGDIE"
     gene            7211..>7447
                     /locus_tag="PXG19_001894"
     CDS             7211..>7447
                     /locus_tag="PXG19_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067167.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDAT"
BASE COUNT         2197 a         1376 c         1887 g         1987 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc taaacacggc aaggcattgg
     6661 gcggtttatt accgcctgta tcgtatgacc caaacggcag atggctagcg ttatcccttg
     6721 aagttgaggg gagagagcta gaccgcattg atgcgagagc caagacttta atcgatgccg
     6781 ttgatgtatc aacaggcatt tttattgatg attgggagcg ggtttgtggc ttaacggcga
     6841 atagctcact accgcttgaa acccgaattg agcgtgtgat tgcaaagctg aatcagttgg
     6901 gtggattgtc gataggctat atcactcaag tggccaaaga gcttggatat tgcatcaaaa
     6961 ttagtgagcc acaacccttt attgctgggc taagccgagc tggggatatg ttatggcata
     7021 aagacattat gtggacattt tttgtggata tttgcaaccc cacagatgat tacaagcgtt
     7081 ttagagcaag tgtgtcaatg gctggcgatg cgttaatggg acgatacaaa gacccaattt
     7141 tagaaagtct acttgaagag gtaaaacctg catttagccg tgtgtgggta agatatttag
     7201 gagatattga atgaaacaag tgatgaatcc gattaatacc ccaacacagc gttttaaaga
     7261 tggcaaccct gccactggtg aatatggcac gattgtgact gctgaatttt tgaataacgt
     7321 ccaagattcg gtcattaaca cccaacaaga attgcacagt gtacttgctg aagcaggaat
     7381 cgaagcaaat gacgaacaag ttaatcaggt ggctaaagca atcaagaaaa ttgcgggcga
     7441 tgctact
//
LOCUS       DANMGB010000124         7404 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.124, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000124 DANMGB010000000
VERSION     DANMGB010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7404
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.124"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            43..300
                     /locus_tag="PXG19_001895"
     CDS             43..300
                     /locus_tag="PXG19_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067168.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(347..967)
                     /locus_tag="PXG19_001896"
     CDS             complement(347..967)
                     /locus_tag="PXG19_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL6067169.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(969..1622)
                     /locus_tag="PXG19_001897"
     CDS             complement(969..1622)
                     /locus_tag="PXG19_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL6067170.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            1671..2330
                     /locus_tag="PXG19_001898"
     CDS             1671..2330
                     /locus_tag="PXG19_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL6067171.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(2367..3413)
                     /locus_tag="PXG19_001899"
     CDS             complement(2367..3413)
                     /locus_tag="PXG19_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL6067172.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(3413..4366)
                     /gene="dusC"
                     /locus_tag="PXG19_001900"
     CDS             complement(3413..4366)
                     /gene="dusC"
                     /locus_tag="PXG19_001900"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL6067173.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(4444..5070)
                     /locus_tag="PXG19_001901"
     CDS             complement(4444..5070)
                     /locus_tag="PXG19_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL6067174.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(5070..5927)
                     /gene="djlA"
                     /locus_tag="PXG19_001902"
     CDS             complement(5070..5927)
                     /gene="djlA"
                     /locus_tag="PXG19_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL6067175.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(5975..6685)
                     /locus_tag="PXG19_001903"
     CDS             complement(5975..6685)
                     /locus_tag="PXG19_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6067176.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(6921..>7404)
                     /locus_tag="PXG19_001904"
     CDS             complement(6921..>7404)
                     /locus_tag="PXG19_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6067177.1"
                     /translation="KKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAAG
                     EFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADERG
                     TPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLEY
                     "
BASE COUNT         2191 a         1628 c         1433 g         2152 t
ORIGIN      
        1 cctaaaaaag gttcaacatt atttgtacct aatataggtg caatgaaaaa tcttagatta
       61 tcaatacatt ccagcgagca tatttggtta agagaactat tcttaaaacg ccgtttggaa
      121 ctagggctaa cacaacgcac attaggagaa aaaatgggcg ttctttactc atttatcgga
      181 aaagtagaaa caggagatcg cagattagat atttttgaat ttatcgctta ttgcaaaggg
      241 ttagatttag atcctttatc tgtattgcaa gaaattgaac aacaatttcc tcataaataa
      301 aggcattgag ttataactca atgcctttat tttctatgtc aaatctctac atgctcggct
      361 tagtctctgc cagaatggcg tatttattat tcatttcctc tgcccaagcg gttaaatttg
      421 ggtaattttt tgcaagatcg tagcctatct tatctaagcg gaatgcccac cagtcaatta
      481 atgctactgc ggttaatgtg cctaaattca gctctgtgcc aaactcttgc aatgcctctt
      541 ctaattgtct gaacgaacgg atattgcgtt ccattaattg ctcgtggcgg ctgacccacc
      601 attcattctc ggggcgagcc atacgttctt gtaataaagt tggcatcgta ttttccataa
      661 tgccgtccgc caaattatgt aatgccaaca ctgcccagcg aggtttaccc tctttaggta
      721 acagtggagt gttattgcct ttttggtcaa gatattcgct aattaacaaa ctaccgaaaa
      781 gccaacgtcc gcagttgcgt tgtagggcag gaatacgtcc taacgggtta tcttgattat
      841 gtggcgaatt tggatccatt gcttttgtca cccgcaacat ttcgacttta tcgtctaatt
      901 ggtggtgttt aatcaccgca agggctttgc gggcgaaagg gctggtggtt gagtaccaaa
      961 gtttcatact attctccgtg tttgatgtga ttggatttgc aaattttttg ccaaaaatga
     1021 ccgcttgtcg gcaaggcttg cactgagatt ttctcatttt cgtattcaaa atcaagctga
     1081 taagcgtgca aataaacacg gtcggcttgg ctacctgaat agagtttatc acctaaaatc
     1141 gggctgccca aacttttcat tgccactctt aattggtgag ttttgcctgt tttgggttgc
     1201 aaaataaaat gcctgagcga gtcttcaaca gaatgagaaa taaattgcgt tactgccggg
     1261 ttttccttac tgtggcataa tttccacgct ccatttctgc ttttttgcat atcgccaaca
     1321 attctaccct gctttttctt cggcttttta tcgcttaatg cccaataggt tttgtagatt
     1381 ttatgctgtt caaataaatg gtaaaacctt gctgccgcct ctttattcaa cgctaaaatc
     1441 agtaaacctg aggtgatttt atccagacgg tgaaccagcc aaacctgctt tacattcagt
     1501 tggcgagcca ctaattccgt taagccgatt tcagcctcat ctttatgcac actcaagcct
     1561 tccggcttat tgataataat aaaatcacga tgttgataac aaataggcaa tgttggggtc
     1621 attttgctat aatccttcca atttttgact attttagcaa ggaaattaca atggctgtta
     1681 ccatttattt agtacgacac ggcagaaccg tgtggaattt ggaaggcaga ttacaaggct
     1741 cgggcgattc cgctttagta gaagaaggga ttatcggagc gaagaaaacc ggcattgcgt
     1801 taaaacatat tccgtttacc gccgcctatt ccagtatgca gaaacgggct caagataccg
     1861 caaactacat tttagcagaa aatgaacgca gtaatattcc gcattttcat cataaaggct
     1921 tgaatgaatt tgattttggc agctgggaag gaatgaaatc tgtcgatttg caagaaaatg
     1981 atgaatattg ggtgatgaaa cgtacaccgg cagaatatct ggcaaaagca aacggtggcg
     2041 agcgatttga gcaactttat caacgggtga ctcaggcgtt caatcaaatc gccgagctac
     2101 accaaaatga cggcaaagtg ctgattgttt cacatggtat gaccttaacc ttactcacgg
     2161 ctgtgttaaa aggcattgcg tggcaagatt tccgcaatga agaaaaacat agctttgtgt
     2221 tcaatactgc cattacgaaa gtagaagtag agaatggcaa agtaacggtg ctggaattta
     2281 ataataccga ccatttggat aatgtgccaa caagccaata caaacgataa tattaagggc
     2341 ggaacattgt ccgcccatag cattttctaa tcagagaaca ctttttcttt cgtttctgtt
     2401 ttagcaaata ccgtattttt gaccgaagta agcaactcct gacgaatagc tgaaattctt
     2461 ggcttctcat tcgcttgaaa agcaacagga cgacaaaatt ccattgcttt aatgccaagg
     2521 cgagcagtga gtaaacccac accaatacct tgtgcggcac ggagcgataa tttcgccgta
     2581 aggttttgcg agaagaaatc cattccaaca tcagtagcga tttcggttgc accggcgaac
     2641 accatatttt tcagcaccat tttgaacagt tttaagcggc tgatataacc caattccatt
     2701 ccataggctt tggtaatttt attcactaaa gcgatatttc ttgccgccat taacaacaca
     2761 tcaactattg ccagcgggct aaccgccaca atcaccgcat tttctgccgc attgcgggaa
     2821 atcatctgct taacctgttt atctatcggc tttagcacat tttcgctaaa cagatatagt
     2881 acctctttgg cattataagc ctcgttcagt tcgcttttcc aaagttgctc ggcttgagca
     2941 atgctcggca agtgattaag ctgatttgca atattttcgc aaaatttgac cgcttgttcg
     3001 ccatcattgg aaggcagctg ttccagcaat aattggttac tcatttgttg atttttctga
     3061 tgatttcgca aatacaccaa ctttcgccat tcggaaataa tcgccccaac gcccaacaag
     3121 ctgacaataa aaaagactat cgagaacgca aaatagatcc actctctttg ctggaacgta
     3181 tcaatcaacc actgaatact ttgagcaatt accgccacgc caaacaaggc aagtgtggca
     3241 agtagtactc gaatccaaaa gcgggaaggc ttaaggcttt cttcaataat cagctccgcc
     3301 tcaactgctt tttcctcttc ttcaataatc gcattttcga gatcaaactc ttgtttaggt
     3361 tcaaaatgct cggttgtttt tagctcttct tcattaaaaa tttgcttact cattattcct
     3421 ccactgcctt ttcaatatgt gcttttagac catcatagcc gtgttcggtt ttcaagatat
     3481 caaataattc taccgcttga ggatattctt tatccaaata acgtagccat tgtttgatgc
     3541 gagcaacgtg gtaaaaaccg gtatcaaact gattttccat ctgaacgtac ttaaacaata
     3601 gctgtagcac ttcattccac gccattttcg gaacattata tttcaccact ttgcttaaat
     3661 tcggtgtgtt taacgcccca cgccccatca ttaatgcctt gcaagcggtt attttttggc
     3721 aatttttcgc cgattcaaaa tcccaaattt cgccgttggc gataacagga atagacagcc
     3781 gttgttgaat ttcgccaatc gcctgccaat taattctttc tgctcgataa ccatcaactt
     3841 tggttcgccc gtgaacggta atttcattcg ctccgccctg ttctaccgca tcggcaattt
     3901 caaaacattg gctaacggaa tcccaaccta atcgcacttt tacggaaacg attttatcgc
     3961 ttggcacagc ttcacgcatc gctttggttg cacgataaat cagttccgga tcttttaata
     4021 acgaagcccc accattgctg ccatttaccg ttttagaggg gcagccacag ttgagatcta
     4081 ccccgtgtga accaagctca atggcaagag ctgcattttc tgccagccac tgtgggtgtt
     4141 gccctaaaag ctgtacccgc actggtgtgc cggaatcggt taatccgcct tgatatagct
     4201 caggggctag gcgataaaag gttttcttcg gtaaacgttg atcgaccact cgcacaaatt
     4261 cggaaataca gagatcgtag tcattcactg aagttaaaag gttgcggaca aaagggtcta
     4321 aaaccccttg catcggggca agaataacgt taggaattgg attcattggt aaaataaaaa
     4381 atacaagcgg ttattttttc tcaacatttt gcaaaaaatt ggcaagaaac aaccgcttga
     4441 aggttaaaaa tgtctatcgt gaatgcgcaa atcggggcga gcgatcaggt aaatcatcag
     4501 tgcggttaat gccccaagag tatccgcaag catatctttt tgagcgtccc aaatatcccc
     4561 ttgcgagcct agaaattcca cgccggcatt gccaccttca atcacggcat attgccattc
     4621 aataatttcg taagctgccg ccaccgacat aatgaaaaac agcgagaaga aaaatgctac
     4681 gcccattccg cacttgcgtt tacgcagtaa ccattctgcc atcgggaagc tgtaaaaacc
     4741 gataatgtaa tgtgctactc gatcaaaatg gttacgatct tcacctaaaa tcggggttag
     4801 aaattgattt gcccactcaa acggcacatt ggcaaaggta tattttgccc cgatcaagtg
     4861 cataatcagc caaagcgaca tcaaaaaata agctaaccca ctaaactgaa atttagggta
     4921 agtgataatt aaaagggcaa aaacgataaa aatcggtatc acttccgcat accaaactgc
     4981 gcggtctgtc ggatttaacc ctgaccaaac cgcaatcacg gtaataacaa tcgctaaaaa
     5041 tagagggatg atatgcgagc gtgaatccat tatttccact ctttcacttt acaaattaaa
     5101 tcgtacgccg cttgaatttg ttgagctttc tcttttgcca actccatcat ctcatcaggc
     5161 aaacctttag cggctaattt atccgggtga tgttcgttca ttaacttacg ataagcccgt
     5221 ttcactgtat tttgatcgtc ttgtgcggtt acgcctaata cggtataggc tgcctcaatg
     5281 cttggttgtg caggctgctg ataactgccc tgatagccac cttgagattg ctgatgataa
     5341 ctcccatttt gctgataata gccaccattg cggaattgtt gagctgccat aatcattgcg
     5401 atcatctgct caaattggaa gcgagacatt cccattgttt cggcaatcgt aaacagaatt
     5461 tgttgctcgt tcacatcaag ttgcccatct tgcaaggctg cctgcatttg cacttcgaca
     5521 aagaaacgta ataagtcagt tcttgcccca caggcttctc tgaactcttg aatgacttgg
     5581 cgtaacggga agtcaggctc tttacctaag gtaaaggcat tttgcgctaa ttgctgggct
     5641 gcactatcta attttaagcg agccattaac gctcgggcta attcaatatc cgcttcagta
     5701 acacgccctt ttgctttcgc aatatgcccc aacaccgcaa aagtggtttg ggtgaaaagc
     5761 gattggcgag ttaaattttt accgaaaaga cttgaacgaa ctgaacctaa ttcatagagt
     5821 tttttatcgg ctaaatgccc gataaaagcg ccaagtatcc caccaaataa accgtgaaaa
     5881 agctgatagc ccaagaaaaa accgactatt tttccgataa attgcatttt tttatccttt
     5941 tatagaaatg aataaacgtt attctaacaa aattttactt tgattgcttt ttagttaata
     6001 caaacataag ccagcttgag acaaaaataa ttgcataacc tagccaactc aacatatccg
     6061 ggtattgttc aaagaacaac aaccctaaaa ttgcactaaa tagcacagag gcataactat
     6121 aaattgagat gtctttcgcc gccgcatatt tataggcggt agttacacaa aactgcccga
     6181 ccgctgaagt tacccctgct aacactaagt agattgtctg taaattggtt agcactacat
     6241 aatcaatggc gacaaaaggc aataatatca aggtcgaaaa ggcagaaaaa aagaaaacaa
     6301 tggtattagg tgattctact tttttggttt ttgccaataa ccttaagcat aaataggcaa
     6361 tggctgcaaa cacagagcca atcacgccaa ccagataagg cataaagcga atatcaactg
     6421 ccggtttgat aataaaaagt gccccgataa aggcaataag gcataaaatc cattgcagga
     6481 gagatgctct ctcttttaaa aaaatcgcag aaagaataat taaaatgaac gacgtgagtt
     6541 tgccaatcat atcgacatca cttagcacaa ggtgatcgat gatatataca ccacataaaa
     6601 tccccaataa cccggtgatg gaacggctta ataataacaa acgattttct gcataaccaa
     6661 agaataattg gcgatttttc cacacaatat aaccgcttat caatgctgtg cgttgcgaaa
     6721 aatcgctttt tgtgcaatcg gtacatcccc cgaaagacga agaaaagcag ccataatcgc
     6781 aaagcttagt gccgacaaaa gcacacaaaa aatggcttta aataacggcg agagcgaatt
     6841 ccaaaaattc atagcataaa ggcttttaat aaaaataaag ccctgattat tcagggcttc
     6901 aatttagaat caactaagaa ttagtattct aatactgcac gacggttttt cgcgtagtca
     6961 gcttctgagt gacctaatac tgctggtttc tcttcaccgt aagaaacagt tgaagtgttg
     7021 ttagcacctt tagctgctaa gtaaccttta actgcatctg cgcgacgttg acctaatgcg
     7081 atgttgtact ctggagtacc acgctcatca gcgtgaccag caatagttac gttaccttga
     7141 gtttttgcta ataattgagc gtgagcgtct aataattgac ggtattcacc ttcaactgca
     7201 tagctgtcaa aaccgaagta tacagtgttg tattgtgctt ttaattgttc agctgttaaa
     7261 ccaccgaatt cgcctgctgc atttgctgct gcatttgctg ctgcgtttgc tgctgcgttt
     7321 gctgctgcat catctgatga gctgctacat gctgctaatg cgaaagctgg tactgctacc
     7381 attaatactt tagcaaattt tttc
//
LOCUS       DANMGB010000125         7304 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.125, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000125 DANMGB010000000
VERSION     DANMGB010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7304
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.125"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            31..450
                     /locus_tag="PXG19_001905"
     CDS             31..450
                     /locus_tag="PXG19_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL6067178.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            521..2077
                     /locus_tag="PXG19_001906"
     CDS             521..2077
                     /locus_tag="PXG19_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL6067179.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2135..2392)
                     /gene="rpsQ"
                     /locus_tag="PXG19_001907"
     CDS             complement(2135..2392)
                     /gene="rpsQ"
                     /locus_tag="PXG19_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL6067180.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2392..2583)
                     /gene="rpmC"
                     /locus_tag="PXG19_001908"
     CDS             complement(2392..2583)
                     /gene="rpmC"
                     /locus_tag="PXG19_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL6067181.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2583..2993)
                     /gene="rplP"
                     /locus_tag="PXG19_001909"
     CDS             complement(2583..2993)
                     /gene="rplP"
                     /locus_tag="PXG19_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL6067182.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3007..3714)
                     /gene="rpsC"
                     /locus_tag="PXG19_001910"
     CDS             complement(3007..3714)
                     /gene="rpsC"
                     /locus_tag="PXG19_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL6067183.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3734..4066)
                     /gene="rplV"
                     /locus_tag="PXG19_001911"
     CDS             complement(3734..4066)
                     /gene="rplV"
                     /locus_tag="PXG19_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL6067184.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4077..4352)
                     /gene="rpsS"
                     /locus_tag="PXG19_001912"
     CDS             complement(4077..4352)
                     /gene="rpsS"
                     /locus_tag="PXG19_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL6067185.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4383..5204)
                     /gene="rplB"
                     /locus_tag="PXG19_001913"
     CDS             complement(4383..5204)
                     /gene="rplB"
                     /locus_tag="PXG19_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL6067186.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5223..5528)
                     /gene="rplW"
                     /locus_tag="PXG19_001914"
     CDS             complement(5223..5528)
                     /gene="rplW"
                     /locus_tag="PXG19_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL6067187.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5525..6127)
                     /gene="rplD"
                     /locus_tag="PXG19_001915"
     CDS             complement(5525..6127)
                     /gene="rplD"
                     /locus_tag="PXG19_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL6067188.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6143..6772)
                     /gene="rplC"
                     /locus_tag="PXG19_001916"
     CDS             complement(6143..6772)
                     /gene="rplC"
                     /locus_tag="PXG19_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL6067189.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6798..7109)
                     /gene="rpsJ"
                     /locus_tag="PXG19_001917"
     CDS             complement(6798..7109)
                     /gene="rpsJ"
                     /locus_tag="PXG19_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL6067190.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2124 a         1556 c         1359 g         2265 t
ORIGIN      
        1 tattaatgga gattcaacac ggctgaacaa attgttcctt caaatgaagc tgttttaaaa
       61 gcagtccacg atactttagt tatttcaaca actgatttac aaggtgttat tacttacgct
      121 aacgaccttt tctgcaaatt aaccggtttt acccgtgaag aattaattgg acaaccgcat
      181 aatatcgtac gccacccagc tgtaccaaaa gaagtttata aagatatgtg ggatacaatc
      241 caagccggta aaatctggac aggtatcgta ccaaactgcg gtaaaggcgg tgtagtttat
      301 gtggttgata ccaccgttca accaatgttt gatgaaacag gcaaaattac aggctatatc
      361 agcgttcgcc gtgtaattaa tgatttaatg accaactttg aagcagtaga atcagcaaaa
      421 gaaatctttg atgacttcta cggtgaataa ttaaaaaaca atgattgcgt gtaaaagatg
      481 atctctttta cacgcaattt tttattttcg aggagtttgt atgtctctca ttccccatat
      541 ccacattgct tatggttcgg agtctggtaa cgcagaaaag cttgcccaac aattagctat
      601 ccaacccttt ttacttccct actcacccac actttctaca ttaaacgaaa ccgatttaag
      661 ccaattatct gccgagagtt tattgcttat tgtaaccagc tcctttggtg atggcgaacc
      721 acctgaaaac gccgatgaat ttgcagaaaa attggaaaat ttgaccgctt gtaatctgca
      781 atatgcgata ttcgggctag gtgatattac ttatgataaa ttctgtggct atagcaaaca
      841 actagattca ttattacaac aaaaacaagc taaagctgtg attgcaaggg ttgatgccga
      901 tttaaactat caagaaattt ttaaacaatg gctaccccta gtggagcagg cattacattc
      961 aacaaacaaa gaaacgatcc aacattccct ttctgttcaa gcttacggcg aggaaatggc
     1021 ataccaagca gaagtgttgg aaattaagca tttggcaaac tcaagccctg cggtgtatca
     1081 cattcgttta tcattaaaag agagcggtat tttctatcaa gcaggggatt taatttatgt
     1141 caaagtgcag caaccagaca gactattaaa tgaatatgca gaatggttta acgatcaaaa
     1201 tgcagttgca ttactacgcc ataaagaact ccgactacta agtaaaaatg tactgcgtga
     1261 tattcaaaaa atttgcggca gtaatgaact caaagattta actaaaattt ccaataaaaa
     1321 agcattggaa caatatgtct atgggcggga tttattagac gtattacgcg attttgaccc
     1381 aaacaaaagc gtgacattag ccgatttaga gccaatttta tctaacttag ccgcacgagc
     1441 ctattcaatt agctcttgcg gtaaaactca ccctgattat gttgatttat gtatccgcca
     1501 cgtttcgtat catttaaacg gtagagatta tcaagggact gcaagtgggt atttatccga
     1561 attacaagcg ggcgattttg tctcgatttt tgcaaatgcc aatccgaatt tccgtttacc
     1621 cgaaacatta accgctccgg tggtgatgat tggctcaggt actggcattg ctccgcatat
     1681 cgcattttta caagcgttag agcagcaata tcagggggtt gaaagctatt tattcttcgg
     1741 cgagcgttat cgtgataaag attttctgta tcaaacggaa ctggaaaatt acttagcaaa
     1801 aggcacctta actcagctgt ttactgcttt ttcacgtgat caggcagaga agttttatgt
     1861 gcaagatgcc ctatcgcaac aagcagagtt agtttggcat ttaattcagc aaggggctta
     1921 tttctatatt tgtggtagca aagcaatgag taaagcaata gatgcggaac tcatcaaaat
     1981 tgcagatcaa attggaggcg atccttatat tgatgatttc aataatatta ttgcaaaatt
     2041 ggtcgcagaa ggccgattaa tgcgagatgt atattagcaa atgaaaaaaa ctaaaaaccc
     2101 agcaaaagct gggtttttat ttaatcatag ttcattaagc aacaactgct ttctcaacta
     2161 cacgaactaa agtccaagat ttagtttttg aaataggacg acattcctta atttcaacaa
     2221 catcacctaa tttagcttca ttgttttcat cgtgtacatg aagtttagta gtacgacgga
     2281 taaacttacc gtataacgga tgtttaactg tacgttcgat agcaacaaca aatgatttat
     2341 ccattttgtc gctaaccact ttaccttgta ctgtacgaat tttatcagtc attattcacc
     2401 cgccttttcg gttaatacag ttttaacttg tgcaatacta cgacgcactt gttttaactg
     2461 gtgggtttgt tgaagctgac cggtggctgc ttgcatacgc aatttgaatt gttcacctaa
     2521 aaggttcact aactcaccat tcagctcttc aacactttta ttacgtagtt cttgagcttt
     2581 cattacatca ccgtcttagt tacaaatgtg gttttgaacg gaagtttagc tgccgctaat
     2641 gcaaacgcat tgcgtgcaac ttcttcagaa acaccatcca tttcatagag aactttaccc
     2701 ggttggatta aggctaccca gtactcaacg ttacctttac ctttacccat acggacttct
     2761 aatggttttt cagtaattgg tttgtctggg aacacacgga tccagatttt accttgacgt
     2821 ttaaccgcac ggctcatcgc acgacgagca gcttcaattt gacgagctgt taaacgacca
     2881 cggccaatag cttttaaacc aaatgaaccg aagctcactt ctgtgccacc cgcgatacca
     2941 cggttacggc ctttgtgtac tttacggaat tttgtgcgtt ttggttgtaa cattcagtga
     3001 ttctccttat ttacgacctt tgccacgtgg cgccttttta ggctgtgccg ctggttcttt
     3061 ttcagattca atcactgcag ccattccacc aagaatttca cctttgaaga tccacacttt
     3121 tacgccgatt acgccgtaag tagtgtgagc ttcagcagta ctataatcga tgtctgcacg
     3181 aagcgtatgt agaggtacac gaccttcacg ataccattct gagcgagcaa tttctgcacc
     3241 acctaaacga ccgctaactt caactttgat acctttagca cctaatttca tcgcgttttg
     3301 aactgctttt ttcattgcac gacggaacat cacacgacgt tcaagttgag aagcgatgct
     3361 atctgcgact aatttcgcat ctagctctgg ttttttcact tcagcgatgt tgatttgagc
     3421 tggaacgcca gcgattttcg caactgcgtt gcgtaatttt tcaacatctt cacctttttt
     3481 accgataacg atacccgggc gagctgtgtg aatagttaca cgaatgcttt ttgcaggacg
     3541 ctcaatagtg atgcgtgata cagaagcgtt cgctaactct ttgtttaaaa atttacgtac
     3601 tttgaagtcg ccgtctaagt tatcagcgaa atcttgtgta ttcgcgaacc aagtagagtt
     3661 ccaaggttta acaataccta ggcgaatacc attaggatgt actttctgac ccatttgtta
     3721 ttctcctact taattaacga tctgacacaa ccacagtgat gtggcttgta cgttttaaaa
     3781 tacgatctgc acgacctttt gcacgtggca ttacacgttt catgcttgga ccttcatcaa
     3841 cgaagatttt agcaacttta agatcatcga catctgcacc gtcattatgc tctgcgtttg
     3901 caatagctga ctctaatact ttcttaacaa gcgtcgctgc ttttttgtta gtgaaagtta
     3961 agatttctaa tgctacagaa acttttttac cgcgaattaa atcagcaact aagcgagctt
     4021 tttgggcaga agtacgagcg taacgatgtt tagcaatagt ttccatcttt tacctcttat
     4081 ttcttagctt tcttatctgc ggcgtgaccg cggtatgtac gagtcggtgc aaattcacct
     4141 aatttatgac cgatcatttc gtcggaaaca taaacaggaa cgtgctgacg accattatgg
     4201 actgcgatgg tcaaaccaat cattgatgga atgatcattg aacgacggga ccaagtttta
     4261 attggttttt tatccccgct ttccaccgcc ttctctacct tcttcaacaa gtgtaggtca
     4321 aggaaaggac ctttcttgag ggaacgtggc attggtgttt accttttagt taatgaatta
     4381 aattatttgc cacgacgacg tacgatgaat ttatcagtac gtttgttgtg acgagttttc
     4441 ttacctttgg tttgaacgcc ccaaggtgta acaggatgtt taccgaagtt acgaccttca
     4501 ccaccaccgt gtgggtgatc taccgggttc attgcagtac cacgaacagt tggacgaata
     4561 cctctccaac ggtttgcacc tgctttacca agaacgcgaa gcatatgctc tgagttacct
     4621 acttcaccaa tggttgcagt acactcagct aatactttac gcatttcgcc tgaacgaaga
     4681 cgtaaagtta catagttacc ttcacgggca atgatttgaa cgtaagcacc agcagaacgt
     4741 gcaatttgac cacctttacc aggttttaat tcaacgttgt gtacagttgt acctactggg
     4801 atgttacgca ttggtaatgc gttacctact ttaatcggag ctgaagcacc cgcttgaatt
     4861 tgatcaccag cagttaaacc ttttggtgct aaaatatagc gacgttcacc atctttataa
     4921 agtactaatg cgatattcgc agaacgattt ggatcgtatt ctaaacgctc aacaacaccc
     4981 ggaatgtcta atttattacg tttaaaatca attaaacggt agtgttgttt gtgaccgcca
     5041 ccaatgtgac gagttgtgat acgacctaag ttgttacgac caccagtttt agatttagta
     5101 tctaaaagtg ctgcaaaagg tttacctttg tgaagctcag cgtttacaac tttaacaacg
     5161 tgacgacgac cagcggaggt cggcttacat ttaacgatag ccatttattt tatctcctct
     5221 gattactctg ccgcaccttc aacgaagtca agcgattgac cttcttgaag agttacataa
     5281 gcttttttcc agtcactacg acgaccaact ttagcaccac ggcgtttagt tttaccttta
     5341 actactacgg tacgaacaga atcaactttt acttcaaaaa gttcttcaac tgcatttgca
     5401 atctcaactt tgtttgcatc taatgcaact ttgaatacga ttgtattgcc tttttctgcg
     5461 ttgtttgtcg ctttttcaga gatatgtggt gctttaagca cgtttagcaa acgttcttgt
     5521 tgaatcatgc taacatctcc tcaatttgtt ttactgcatc tacggttaca accactttat
     5581 cgaaagcaat taagctaact gggtcaatac cttgcacatc acgcacatca actttatata
     5641 agttgcgtgc tgctaagaat aaattctcat ctacgtttgc agtaatgata agagcgtcat
     5701 ttaacgccat atcttttaat ttttgtgcta atactttagt ttttggtgca tcgatttcga
     5761 atttctcaac aaccactaaa cggtcttgac gaactaattc agaaagaatg cttttgattg
     5821 caccacggta cattcttttg ttcacttttt ggctgtgatc ttgtggtttc gcagcaaaag
     5881 ttacactacc cgaacgccaa attggtgatt taatatcacc agaacgtgca cggcctgtac
     5941 ctttttgacg ccaaggtttt ttacctgaac cagacacttc agcacgagtt ttttgagcac
     6001 gagatccttg acgagcacct gctgcataag caacaactac ttggtggatt aatgcttcat
     6061 tgaactcacg tccgaaggta gtttcagaaa cagttagtgc gtttgcacct acaacttgta
     6121 attccatctc tatctcctag acttatgctt taactgccgg ttttacgata acatcaccat
     6181 tagttgcacc aggaacggca cctttaacta ataataattt acgctcaaca tctacacgaa
     6241 caacttcaag tgattgaacg gttacacgct ctgcacctaa gtgtcctgcc atttttttac
     6301 ctttaaacac acgacctgga gtttggtttt gaccaataga accaagtaca cgatgtgata
     6361 aagagttacc gtgagttgca tcttgagtac ggaagttcca acgtttaaca ccaccttgga
     6421 agcctttacc ttttgatgta ccagtaacat cgactttttt aacatcagta aagatgtcaa
     6481 cattgatttc ttgacctaaa gtgaattctt caccttcagt agtacgaaat tcccataaac
     6541 cgcgtccagc ttcaacacct gctttcacga aatgacctgc ttctggttta gttacacggc
     6601 tagctttttt agagccagta gtaacttgaa ttgcagagta gccatcgttt tcaagggttt
     6661 taacttgagt aacacggttg gcttcgattt cgataacggt aactggaata gacacgccgt
     6721 cttcagtgaa aacgcgggtc ataccaactt tacgaccgat taaaccaatc attgtaataa
     6781 cctcttaaaa ttcccaatta acctagacta atctgaacgt caacgccagc agctagatct
     6841 aaacgcatta atgcatcaac agttttttct gttggttcaa caatatcaac taaacgtttg
     6901 tgagtacgga tttcatattg gtcacgtgca tctttattca cgtgtggaga aatcaataca
     6961 gtgaaacgtt ctttacgagt tggtaaagga attggaccac gaacttgtgc accagtacgt
     7021 ttagctgttt ctacgatctc cgcagtagat tgatcaatta aacgatgatc aaatgctttt
     7081 aagcggatac ggattctttg gttctgcatt agaccagagc tccaattaaa aaatttagct
     7141 aataaaaaaa ccaaactacc acttaacaaa ttagttaagg gagctcagtt aaacctatat
     7201 agttccaaaa ttaggaacat tgtatacact acaatatctg tagtgccatt tgataaatga
     7261 ttacatcaaa tgtctttaga tacctaaagc tttgctatca tact
//
LOCUS       DANMGB010000126         7247 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.126, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000126 DANMGB010000000
VERSION     DANMGB010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7247
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.126"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..314)
                     /locus_tag="PXG19_001918"
     CDS             complement(<1..314)
                     /locus_tag="PXG19_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067191.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NEL"
     gene            complement(324..530)
                     /locus_tag="PXG19_001919"
     CDS             complement(324..530)
                     /locus_tag="PXG19_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL6067192.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(1000..2214)
                     /locus_tag="PXG19_001920"
     CDS             complement(1000..2214)
                     /locus_tag="PXG19_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6067193.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(2417..2492)
                     /locus_tag="PXG19_001921"
     tRNA            complement(2417..2492)
                     /locus_tag="PXG19_001921"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2457..2459),aa:Ile,seq:cat)
     gene            complement(2586..3323)
                     /gene="pgeF"
                     /locus_tag="PXG19_001922"
     CDS             complement(2586..3323)
                     /gene="pgeF"
                     /locus_tag="PXG19_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL6067194.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(3355..3741)
                     /locus_tag="PXG19_001923"
     CDS             complement(3355..3741)
                     /locus_tag="PXG19_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6067195.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
     gene            3822..4823
                     /gene="yejK"
                     /locus_tag="PXG19_001924"
     CDS             3822..4823
                     /gene="yejK"
                     /locus_tag="PXG19_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL6067196.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLIWDELNDTLTIKGLPANLRDQLERNK"
     gene            4890..5231
                     /gene="bamE"
                     /locus_tag="PXG19_001925"
     CDS             4890..5231
                     /gene="bamE"
                     /locus_tag="PXG19_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL6067197.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            5424..6764
                     /gene="gdhA"
                     /locus_tag="PXG19_001926"
     CDS             5424..6764
                     /gene="gdhA"
                     /locus_tag="PXG19_001926"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL6067198.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            6926..>7247
                     /locus_tag="PXG19_001927"
     CDS             6926..>7247
                     /locus_tag="PXG19_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6067199.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQNDLSLILYLTHNRE
                     DREKQ"
BASE COUNT         2062 a         1307 c         1557 g         2321 t
ORIGIN      
        1 agttcattct gctgttggaa taatatttct tgctctgcgt agcatttatt ttctaaatca
       61 acaatcaacg cttgataata ttctatgcgt gcttgtaaac cactattttt atttttgatt
      121 tcaacatatt catctgctga aagcgtgccg atattggcta aattcgtttt ttgccgtgcg
      181 acaaattccg ctttttcgtt ttgcaatgcc tcaagaatat ttttcgcttt gtctaattcg
      241 gtctgaatag ctaaaacggc tttttcttgt tcgtggaatt tagctttttg ttggttaaat
      301 gtttcaagtg tcataatttg cccttattgg ttgcggtgtt gttcaatttt gcgttgaatc
      361 cattgctgga tttcactttc tagccatact ttgctatttg ccccaatact gatactttgg
      421 ggaaaatcgc cggctttcat tttgcgataa atctgcgttt ctgaaagcgt agttacggct
      481 gaaacttcat ctattttcat aaatcgctgt tttgctggtg tgttctccat tttgttttac
      541 tccgtaaaaa tttgctttgg cgtgctattg cctgctaacg tgtgaaagaa taaatcatct
      601 tggatttttt gctatttgtt agggctgtga aaggagattt tacagattag aggggcttaa
      661 ttctgatttg gaaaacttgc aagcggttat ttttctctga ttttttgcaa gttttcagcg
      721 gttctttcat cgttctgtca tcgagttttt aaaagtggtg tttctgcctg cgtaaatttg
      781 cgttttcttg cgtaaaattg cgtaataaaa aacggctata tgaaagtttt tcacgctata
      841 cggggcaatg tttgggctta attttgcatt tgcgtagaaa tcgagacttt aagtgtgcgg
      901 gcgaggcgtg ggatagacgg cacgggctgg gagctgatag gaaaaaatga aaatttttca
      961 tcaagcaaaa agaaaggcgg attgctccgc ctttgtcatt taaatgctct tgcattgttc
     1021 tacaaaatcc gcccattcct gcattattcc acgtctgcgg tctagccagt ttttacggtg
     1081 gtatgcactc attacggtgt ctttgttcgt gtgggataaa caagcctcaa ttactagcgt
     1141 ttcagtagta aaacgttcgt gtaaataggt gctggcaatg cttcttaaac cgtgagccac
     1201 taaaagccct ttatattttc caccgcttaa gcgttttatt gcattattca cggtttggct
     1261 attagccggt ttgtttcggt ctgttcggtg tgtaaaaata tgtttatggt gtccgttata
     1321 tttcttcatt tcctctagga ttgcgatagc ttgttttgtt agcggtacag aatgcggatt
     1381 ttttccgcct ttcattctat ctgccggaat gttgagcgtc ttagtttccc aatctatatc
     1441 gctccattgc accgctacgg cttcaaacgg tctaagaata ttcaagagtt gccattcaac
     1501 taataattta atttgaggcg ttctatttga tttctgcaag tcttgcataa attcggctaa
     1561 ctcttcgggc attattgctg gctggtgtgt cgtgcttacg ctggaaaacg cctttttaat
     1621 gacgctgatt gggttaaaat taattctccc acacaatacc gcataatcaa gaatttctat
     1681 taaattccct gctattctgt gcaaagtgtc gggcattatc cgatctaagt ccgttaagcg
     1741 gttgattgta tcggttaagg taaaatcttc cagcgtatag ccttcaaaac gtgggaataa
     1801 atgattttct aaccgctgta agcatttttc cattgtttta ggcttgcatt ttccctttga
     1861 tagcttccaa tcagcccatt tataggcgaa agattgaata gattcttgct tttccttagc
     1921 ttctctttgc attttggcta aatgctcgaa agggtctaag ccttgtaaaa caagggtatt
     1981 tagttcgtct ctctttaagc gtgcttcggc taagctcatt tgcggatagc taccgattct
     2041 attttttgtg cttcgcttgc ctgttttggg gctgatatag ctataaatcc atactttcgc
     2101 ttttttctgt gcaagaataa atagcccgtt gctgtctgcg ataggcttcg catttgggga
     2161 atatttgaga ttttttagta atgtgtctga aagtggtttt ttagttgcag tcatttcttc
     2221 taatccttga tatataaggg tttatcgaag tttatgatcc ctaaattttc ccgttttcaa
     2281 aatagggatc attttaggga tcataaacac taagatacaa tgcaactaaa gaagacaata
     2341 agagactata aaagaatcta agttcttgat tttatagtaa atttgagaca atgaaagaca
     2401 atatgcaacg cttagatggt ccccccagcc ggacttgaac cagcgaccaa gcgattatga
     2461 gtcgcctgct ctaaccactg agctatgggg ggatttgaaa agtggttgga attatagaga
     2521 aaaaccgagt agtcgtctag aggcagaaga ttactcggtt aattattgaa cgagagaaaa
     2581 tagggttatt ctgttcgcca aattaaggtt gccattcgcc cggtttgttt gtctcggcgg
     2641 taggaaaaaa acagttctgg ttggctgtag gtgcaatatt caccgcctga aatggcggta
     2701 atgcctaatt tattcagacg ttgggtggca atttggtaaa gatttcctaa aaatttaccg
     2761 cttgtagtgc tgtcttcaat aagggcttct ttcgctcttg ggtcaaaagc acagaattgg
     2821 tctgccactt cactcccgac ttgaaaagca ttcggtccga tagccggccc tagccaagct
     2881 gatatttcgt gtggcgggca gttgaatttc tctaccgtcg cctctaatat gccatcgcat
     2941 aacccacgcc agccggcgtg tgccgccgca atttccgacc cgtcttggct ggcaaataat
     3001 accggcaaac aatctgcagt catcactaag cagacttggt ttggttgatt ggtgtaaatc
     3061 gcatcggctt taatattatc acctgaatag ggaagttcaa tcactcgggt gctgtgagtt
     3121 tgggttaaaa acagcggagc ttgtggtaat tgaaatttct caaccaataa agcacgattt
     3181 tgagcgatat cttgtggctc gtcattaacg tgatcaccta agttgaaact gtcaaaaggc
     3241 ggtttgctta ctccgcctgt tcttaaggtc gtcagtgcgt gaatatgttt aggcacattc
     3301 caatttggaa taattttatc catttgcaaa aaatctcaag aaaatgaccg cttgttatcg
     3361 gcgtactgca atcgcttcga tctcaatgcc aacatctttt ggtaaacgag ccacttctac
     3421 gcaagaacga gccggaaaat tagggtgttc gttttcttgg aagaaggctt ggtattccgc
     3481 atttaccttt gcgaagtcgt taagatcttt gacaaatacg gtggtcttta caatatcggc
     3541 aacggttaag ccggcttgtt cgataatggc tttcacgttg ttcagagatt ggcgggtttg
     3601 ttgcacaata tcactcggga tttcgccggt ttcaggattc acgggaattt gcccagaagt
     3661 taaaaccata ttgcctaaat caactgcttg cacataaggc ccaatcgctg ccggtgcatt
     3721 ttctgtgtgg ataactgtca tcttgtgttc ctcttaatga aaaataaacg gattaatgat
     3781 aatatctttt cttattattt ggaataaaga gaagtgaatt aatgagcatt aatgtttctg
     3841 aaatcgtgtt acatcaatta caaaaaacag agggcgagaa cccggagctt aatacgtttt
     3901 tgcgagaaaa tttattggca atttcccctg aagtcgatca aatgatgttg caattacatc
     3961 aagcctatca aagtaaagca aaggcttacg gtatatttaa accggagtcg gttttcgctc
     4021 aacagctcaa ccgcttgttg gagcaagaaa ccgatttttt accttttagc catagctgtg
     4081 ccaaaatgct tgcagcagag ctgattaaat atccgtttgc cgatggtggc acttttattt
     4141 tgtgtcgtta cactttttta gctaccgaat atttgtttat tgcgttgatt gatagccgta
     4201 attcaatgct ggttgatgag cagttagaga ttaaacgcac gcaatatctc gaaattgcac
     4261 aatatgatat tgcctgccgc attaatttaa ctgaactgaa acttgacgca acgtcaaatc
     4321 gctatttaac ttttgtgaaa ggcagagtag ggcgtaaaat tgccgatttc tttatggatt
     4381 ttttaagtgc ggaagaaggg tttaatccac aattgcaaaa tcaaaccttg ttgcaagcgg
     4441 tgagcgatta ttgtgagcaa ggggagttat ctgcccctca aactcgagaa gtgaaaaagc
     4501 aggtgtttga atattgtaaa gggcagataa atagtggaga ggaaattgcg ttaaatgagc
     4561 tttccaacgc attgccaaca ctgaatgaaa tcgattttgc ccaatttacg caagagcaag
     4621 aatacggctt ggaagagaat attccgccta tgcgaaatgc ccttaaaacc ctgacgaaat
     4681 tttccggttc gggcaaagga gtaacgatta gctttaacgc agaattatta ggagagcgtt
     4741 taatttggga tgaactaaac gacacactga caatcaaagg attaccggca aatctgcgtg
     4801 accagctgga acgtaacaaa taatggaaaa tttttatcag tttaggtatt atctcgttat
     4861 ctgaattttg gattatcaaa aggtcaatta tgaaaatgaa atctctttta gctgcaatgt
     4921 tgcttgcact gggtgtaacg gcttgttcaa ccgttgagaa agtggtgtac cgtattgatg
     4981 taccgcaagg caattactta gaacaagata aaattgctca acttaaagtc ggtatgacag
     5041 cggaacaagt tgaatatttg cttggtacac caatgttaaa gaacattttt gaaacccacc
     5101 gttgggatta tgtgtttatt aaacgtgaag gttataaaga tcctgaacaa cgcaatctgt
     5161 ttatttattt tgatgctaaa gggttagtat caaaaattga tgacagcaat gcgaatgcag
     5221 aacaaaaata ggacgatttg ttggttcgaa aagcccactt ttaaaagtgg gcttattttt
     5281 ttgaataaaa aataagcatt taaacttaat ttttcttatt ttaatgataa atttttctaa
     5341 tctatctttt caaagctaaa attgcttgct agacttcgct catcttaaat acacaacatc
     5401 atcaatttat tcaggagtat aatatgagcg atttaaacgc ccttttccaa aaaatcaaac
     5461 aacgtgatcc gaaccaagcc cctttccatc aagcggttga agaagtgttc ggtagccttg
     5521 cccctttctt agctaaaaat ccgaaatata cccagcaagg tttattaggg cgtattgttg
     5581 agcctgagcg tgtaattagc ttccgtgtca cttgggttga tgataaaggt caagtgcaag
     5641 taaaccgtgg ttaccgtgta caaatgaact cagcaatcgg tccatacaaa ggcggtattc
     5701 gtttccaccc aaccgttgat ttaggcgtat taaaattctt agcctttgag caagtattca
     5761 aaaatgcgtt aacgacattg ccaatgggcg gtggtaaagg tggttcagac tttgacccga
     5821 aaggcaaatc tgatgccgaa gtaatgcgtt tctgccaagc gtttatgagc gaattatatc
     5881 gccacattgg tgctgatact gacgttcctg caggcgatat cggcgtggga ggtcgtgaaa
     5941 tcggctatat gttcggtcaa tacaaaaaat tacgcaatga atttacttca gtattaaccg
     6001 gtaaatcgct gacttggggt ggtagcttaa ttcgtccgga agcaactggt tatggtgcgg
     6061 tgtattttgc agagtctatg ttagcgacta aaggtcagca gatcgaagga aaatcagtgg
     6121 taatttccgg ttcgggtaac gtggcacaat atgcagctga aaaagtgatt caaaaaggcg
     6181 gtaaagtatt aacggtttca gattctaacg gttatgtctt attccctgaa tccggtatga
     6241 cagaggcaca attacaagca ttattagagt tgaaaaacga acgccgtgaa cgcttatctg
     6301 tgtatgcaac agaacaaggc ttaaaatact ttgacggtca aaaaccgtgg ggtgtgaaat
     6361 gtgacatcgc tttaccttgt gcaacccaaa acgaattaga taccgaagat gctaaagaat
     6421 tagtgaaaaa cggctgtatt tgtgtggcag aaggtgcaaa tatgccaacc acattaggtg
     6481 gtgttgaagt ctttatcggt gcgaaaatcc tttatgctcc gggtaaagcg gctaacgcag
     6541 gtggtgtggc aacctcaggt ttagaaatga gccaaaatgc aattcgtcta tcttggagtc
     6601 gtgaagaagt agatcagcgt ttattcaaca ttatgaaagc aattcacgaa aactgcgtag
     6661 aaaatggtac tgaagcagat ggtttcgtaa actatgtaaa cggtgcgaat attgctggtt
     6721 tcaaaaaagt ggcaaatgcg atgttagaac agggtattgt ttaatttatt atccctatta
     6781 ttcaagaact gcctcgatat atcgaggcag tttttttatt ttaggttgta gctagagaca
     6841 agctaaattg aaatcgtatt tcatttgcca attatggtaa aatctatgcc aatctcagtt
     6901 ttagcagtat gtgaaagggc agtatatgat cattacgatg aaagatatcg caaaggaagc
     6961 aaatgtttcg ttaggaacag tatcgaatgt attaaacgga aaaagtaatg ttagcttagc
     7021 taaaatagaa aaagtacaag ctgccgttga aaagttgggt tatcgtaaaa atattcaagc
     7081 ctctacgtta aaaagtggca caagtaataa aattgctatt atattgccca atattacaga
     7141 gctgaaatat gcctgtttat atgaaaatct tgatttaatt tgtacgcaaa atgatttatc
     7201 tctcattctt tatttaacgc ataatcgaga agatagagaa aaacaaa
//
LOCUS       DANMGB010000127         7171 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.127, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000127 DANMGB010000000
VERSION     DANMGB010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7171
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.127"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            70..1161
                     /gene="ulaG"
                     /locus_tag="PXG19_001928"
     CDS             70..1161
                     /gene="ulaG"
                     /locus_tag="PXG19_001928"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL6067200.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1245..1991
                     /gene="ulaR"
                     /locus_tag="PXG19_001929"
     CDS             1245..1991
                     /gene="ulaR"
                     /locus_tag="PXG19_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL6067201.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2046..2906
                     /locus_tag="PXG19_001930"
     CDS             2046..2906
                     /locus_tag="PXG19_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL6067202.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2903..3622
                     /locus_tag="PXG19_001931"
     CDS             2903..3622
                     /locus_tag="PXG19_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL6067203.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3843..6320
                     /locus_tag="PXG19_001932"
     CDS             3843..6320
                     /locus_tag="PXG19_001932"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6067204.1"
                     /translation="MYLLEGNQKVKNRNYFVAIATILALSPEVNATELSDQLASRTRY
                     YPSATDSYYSYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTK
                     VYTTHNGRTTVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIV
                     DNKPITDTQPNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWND
                     RSRGYNIDDPNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTA
                     PASATHGIEVAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRG
                     ARIFNQSYGIPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRG
                     DLDPSLQAGLPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVT
                     AMGDYIFNLGGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGA
                     PGVDDVYGWGLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKN
                     GQGELILSGASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEG
                     TVVNQGYSTIKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQ
                     KGLSMSAITSDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSA
                     LDNQIEGNNGSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFEN
                     SETVNKDLSNRLVMLGTLDNVGETAGV"
     gene            6330..7145
                     /locus_tag="PXG19_001933"
     CDS             6330..7145
                     /locus_tag="PXG19_001933"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6067205.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
BASE COUNT         2236 a         1338 c         1623 g         1974 t
ORIGIN      
        1 atttttgtga ttgtttatga ttggttttga ttgcattgtt cttattttag cgtaaatcag
       61 gagactatta tgagcaaaat tcaagaaatc actcgtgaaa gctggatcct ttcaactttc
      121 cctgaatggg gtacttggtt gaatgaagaa attgaagaag aagttgtacc ggaaggcaat
      181 tttgcaatgt ggtggctagg ctgtgtcggt gtgtggatta aaaccccagc tggtgcgaat
      241 atctgtatgg atttatggtg cggtcgtggt aaatccacca agaaagtaaa agatatggtg
      301 cgtggtcatc aaatggcaaa tatggcaggg gtgcgtaagc tccagcctaa tttgcgggct
      361 caaccgatgg tgttagatcc gtttgcgatt aacgaagtgg acttcattct cgcttctcac
      421 tatcactcag accatattga tgtaaacgtg gcagcggcta tttgcaataa cccgaaatta
      481 gaccacgtta aatttgtcgg cccttggcac tgtgcagaat tatggaaaaa atggggcgtg
      541 ccggaagaac gtattattgt ggtaaaaccg ggcgatgtcg tgaaattaaa agatgtagaa
      601 attcacgccc tagattcatt tgaccgtacc tgtttagtga ccttaccggt agaaggtgca
      661 gaagaacgtg gcggagaact tgcaggctta tgcccatcag atgaagaaat gggacgcaaa
      721 gcggtgaact atgtgttcaa aaccccgggc ggtacgattt atcacggtgc agattctcac
      781 tactcaatcc aattcgctaa acacggtaag caatttgata ttgacgtagc gctgaataac
      841 tatggcgaaa acccggttgg tattgcggat aaaatgactt cagttgattt attacgtatg
      901 gcggagtgtt tacgctgtaa agtgattatt ccggttcacc atgatatttg gacaaacttt
      961 atggcaagta cgcaagaaat tattgattta tggcgtatgc gtaaagatcg cttacaatac
     1021 caattccacc catttatttg ggaagtgggc ggcaaatatg tttacccacg tgataaagac
     1081 ttaattgaat atcatcaccc tcgcggcttt gatgactgct tcgagcaaga gccaaatatt
     1141 caatttaaat ccatgctata ggtgagcagt cgccactctc actggagagt ggcgttttag
     1201 caagttcatt atggagcagt agtgattagt aatgggataa agtagtgaac gaaagttata
     1261 gacacaaaga gttattagcc ctgttggaag agcggaaagc actgtcaaca gcagatatta
     1321 tgcagctgtt aaatatttct ccggcaacag caagacgtga tatcagtaaa ttagatggtc
     1381 aaggtaaatt aaaaaaggtt agaaacggag cagaagcaat tctggctcct acatttttac
     1441 agcacacaaa aataactaac aatgcgcagg agaaacgtag aatagcggaa gctgccggtc
     1501 gtttatgtaa agatggggaa agtcttattc tgacgtgtgg ttccacaatg gaaatgctcg
     1561 gtgaagtatt atgtggtaga aaattgcaaa ttattaccaa ttatctaccg cttgcaaacc
     1621 agttgattgc aggttgccac gatgatgtag tgattatggg tgggcaatat aataaacata
     1681 aaaaagtgat gctctcaatt aacacccaaa atgagatgac ttatgccgct accacaatgt
     1741 ttaccagtgg caaaggctta accagcgaag gattatttaa aaccgatatg attattgcca
     1801 atgccgagca acaaatggca aagcacgcag aacgttatgt ggtgttattg gatagcacca
     1861 agctcggcaa aaaagtcggt atgctgttta aagagttcga taaaattgat ttattgatta
     1921 ccggcaaaga ggcggatccg actattatcc aagcattaag aaacaaaggc ctggatatta
     1981 tcttggctta gcctgtagcg gtcaaattta atcaaaattt tacttatcat cttcaaggga
     2041 aaactatgag aaaacataaa ctgggtattt acgaaaaggc cttgccgaaa aacatttcgt
     2101 ggcaagaccg cctttctatc gccaaagtct gcggttttga ctttgtggaa atgtcgattg
     2161 acgaaacgga cgaacgctta gcccgccttg attggagcaa aaaagaacgt gccaagctgg
     2221 tgaaaaccat catcaacacc ggcgtgacca ttccgtcaat gtgcttgtcc ggtcatcgcc
     2281 gtttcccgtt tggttcttgt gatgaagcga cccgccaaaa agcctatgaa attatggaaa
     2341 aagccattca actggcggtc gatctcggta ttcgcaccat tcagcttgcc ggctatgacg
     2401 tctattacga agagcaggac gaaggcacaa tccaacgctt ccaacaaggc ttagaatggg
     2461 cggtggagct ggcggcaagc aaccaagtta ccattgcggt ggaaattatg gacacccaat
     2521 ttatgagttc gatttcccgc tggaaaaaat gggacgagat catcaaatca ccgtggttca
     2581 ccgtgtatcc agatttaggc aacctctcag cgtggaacga caacgtagcg gaagagctga
     2641 aactcggcat cgacaaaatc tctgccattc acttaaaaga cacttacaaa gtgactgaaa
     2701 cctgcaaagg gcagttccgt gatgtgccat ttggtgacgg ttgcgtagat ttcgccgctt
     2761 gttttaaaac ccttgccgag ctgaattacc gtggcgcatt cttaattgaa atgtggacgg
     2821 aaaaagccga agagccgatt actgaaatca tcaacgcccg ccgttggatc gaacaaaaaa
     2881 tgcaagaagg aggatttacc ctatgacgca attaactgaa ttaacccctg cattacaagc
     2941 cttaagagag cgtgtgttaa aagccaattt agaattaccg aagtatggct tggtaacttt
     3001 cacttggggt aacgtaagtg aaatcgaccg tgagaccggt ttagtcgcca tcaaaccttc
     3061 cggcgtagaa tacgatgcga tgacggtgga agacattgta ttggttgatt tacaaggtaa
     3121 tcgagtttac ggagataaaa aaccgtcttc tgatacagaa acgcacttag aactttatcg
     3181 ccaattcact gatattggcg gtgtggtaca cactcactct cgcaatgctg taggttgggc
     3241 acaagcaggg cgtgatttat tggcacttgg caccactcaa ggcgattatt tctacggtgc
     3301 gattccttgt actcgcaaaa tgaccgcaga ggaaattgcc ggcagttatg agctggaaac
     3361 cggaaaggtg attgtcgaaa ctttccgaac tcgaggtatt gaaccgaaag cagttccagg
     3421 tgtgttggta cattcacacg gtccatttac ctggggaaaa gatggacacg atgctgtgca
     3481 taattctgtg gtattagaag aggtggctta catgaatttt attagccatc aaattcgccc
     3541 acaaattggc ccaatgcaac aggaattatt agataagcat tatctgcgta agcatggtgc
     3601 aaatgcttat tatgggcaat agctaataac ctaaaaatta ttttccaaat tatcaacagc
     3661 tttcgagggg ctttctataa tcggaatagc tcctcagtct gtttgagttt atggatagat
     3721 ccacaaataa ttaccatttt ccttttcttg attttaattt tgatttttgt tctaatctct
     3781 gcctcttgtt tttacaagtc tattaaggat ccgtagtaga tttgaaataa acaagagtat
     3841 ctttgtattt attagaagga aaccaaaagg tgaaaaatag aaattatttt gttgcaatag
     3901 caacaatatt agccttatcg ccagaggtta acgcaactga actttcagat cagcttgcaa
     3961 gtagaacaag atattatcct tccgccacgg atagttatta tagttactat aaatatgcac
     4021 cgatttattc gggctactat acatcgaata gccgtaatgg ttattcgtcg tggtattatc
     4081 caggtagcaa tgcaggtgta acaaccagaa ctgtttcgac aacagttaat ggcattacag
     4141 ttacaaaagt ttatacaacg cataatggga gaacaaccgt tcgtaccact tatgctcctg
     4201 ctgtgaacaa accaattgta aataaaccga caccgattgc caataaaccc gttgtagata
     4261 cgccaactca accggttatt gatgccaacc caattatgga tccgccagtc caaccaatag
     4321 ttgataataa acccatcact gatacacagc ctaatccaat tacagataac aaacctgtca
     4381 ttgaatcgcc aattgatgac acccgtccag ttatcattag gcctacaaca ccggtaaatc
     4441 ttcatcctga acctgtagct gttggtgtac ccaatgtagg tattcgatgg aatgaccgct
     4501 ctcgtggtta caacattgat gatcctaata acaaacaaaa tgttaagtta actggtgaag
     4561 gtgttaaagt cggtatctta gatagtggtt ttaaaaacta tttaatgcag gacgatatac
     4621 tcaaaaaatt tggtaatcgc gctgttatta ttgaaacagg gcgtactgcc ccggcttctg
     4681 caacacatgg tattgaggtc gcagaaatgg ttgggggagg gaactctcgc aatggagtag
     4741 cgtctaagtc aacgttatta cttgcggata ttaccaaaac aacaaatgcg ggtacaggat
     4801 tatccgcaac agctccaatt tattatgact tatggaatag gggagcccgt atttttaacc
     4861 aatcatacgg tattccaaag cctcttactt attttaataa caatagaaat tctagctatt
     4921 actatttaca ccaatttgat ggtaatgtgt tgcaattcta taaggataaa gtaaaagagg
     4981 ggggcttatt tgtctgggct gcggggaata accgtggtga tcttgatcca tcactccaag
     5041 ctgggttacc tcattatgaa gctgacttgg aaaaaggttg gatttctgtt gttgcggtag
     5101 caaccagaac taatcaggga ttgggtaact ttgaatggag caatttattg ccatattctc
     5161 aagccggtgt ggcaaaaaat tggaccgtta ccgcaatggg tgactacatc tttaatttag
     5221 gaggtagaaa cattattgct agtggttcat cctttgcagc tccagccgtt acgggtacag
     5281 cagctctcgt gaaacaaaaa tatccttgga tggatggtaa ccttatcaaa caatctattc
     5341 tctcgacggc aaccgatatc ggcgctcctg gagttgatga tgtatatgga tggggtttac
     5401 ttaatattga aaaagccact aatggccctg cgcgttttgg taaacgactc gctttagccg
     5461 ataacgtgac tgtaaatatt ccaaatggaa gctatgagtt ttccaataat attaacggtg
     5521 atgcaggctt ggtgaaaaat ggccaaggcg aattaatttt atcgggtgct agtacttttg
     5581 aaggggatac aacactcaat gaaggtgctg tcactattaa cggtaaaaaa tatgtgtcta
     5641 aagtaaacgt atctccaagt ggtacattgg ttgtcaataa taccacgtta gaaaatggcg
     5701 taaataacga gggtacagtt gtcaaccagg gttattctac gattaagaga gcttacgttg
     5761 cttcagcaca aagtacgcta gtgtcagatt taggttcaaa cttaaatgta aaaggagaag
     5821 ttgacttaaa cggctctact ttatcactag ctgcggtaaa agagggtaaa gctcagtatg
     5881 tgacccaaaa aggtttatca atgagtgcta ttacttctga ttccgcaatt aagggtaact
     5941 ttgctgcaat agaaacctca gggttattaa ctgcgacggc ggaaaaaacc aatgagaatg
     6001 aagtaaaagc aacagttagc cggaaaaatg tcgcgactgc tttagagagc tcattttcgg
     6061 cattggataa ccaaattgaa ggaaataatg gttctacaaa tgctacaaat gatgaattcg
     6121 cacaacaagc ggctacttta caaaacagta ttgcaaacat caatacgcaa agtgtggttt
     6181 tagatagctt atctggtcaa atttatgcgt ctgcgcaagc gcttactttt gaaaactcag
     6241 aaacagtgaa taaagatctc tctaaccgtc ttgtaatgtt aggaacgctg gataatgtag
     6301 gtgagactgc tggtgtgtga gtaacgggta tttatgggaa tggtactcta aaagaaatag
     6361 ggtttggtga aggtaaaacc aatacctatg ctggccaaat aggttttgat aagccagtta
     6421 cagaccatgt gattttaggt gcggcactta attattctaa agcaaaagtg aacttcgatc
     6481 gttatggcgg tagttcaaaa gcagatggaa taggtgcatc attatatgcc cgtataggca
     6541 ataagcataa aacaccttgg tatttacaag gtcgagccgg ttatggcagt gttgattcag
     6601 atgtagagcg tcatattatt ttggcggata ataacgcaag tacagcaaaa atcaaccacc
     6661 gagacagagt attttctgct tatgttgaat caggctatga cttcaagcaa ggtcgctttg
     6721 cgttaactcc atttgtcggt tttagtcatg atgttgtcag acgtggcgca ttcagtgagc
     6781 aaaacagtca atttggtctc accgcggaca aagcaaccta taaacaaaca agcggattga
     6841 ttggtttacg aacatcttta gaggtgaatt tagctgggat gaaaacgact ttccaaggct
     6901 atgtaaatca tcaaaaagcg tttaatcgag aagatcttag ctttaaagca agttatacag
     6961 gtttacaaga tgcaaaattc gacgtaaaag gtattgggct tgcaaaacat aaaacgtggg
     7021 tagggattgg tgcattggcg gaagtaaata aaaatacttc cttatatgtg aattacgacc
     7081 ttaaactcgc aaaaaatagt ggtcacaaca acgttgtgac tgctgggatt agaattaatt
     7141 tctaactgaa tctttttaaa caaaacgggc g
//
LOCUS       DANMGB010000128         7049 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.128, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000128 DANMGB010000000
VERSION     DANMGB010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7049
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.128"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..877
                     /locus_tag="PXG19_001934"
     CDS             <1..877
                     /locus_tag="PXG19_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL6067206.1"
                     /translation="PLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLLEDFLGA
                     SLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQTFGMHW
                     LVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRLTESRIV
                     ILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGSIFSHTF
                     MVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSAQVQKVQ
                     FFVEWIQQKMKECCA"
     gene            953..1636
                     /gene="yjjG"
                     /locus_tag="PXG19_001935"
     CDS             953..1636
                     /gene="yjjG"
                     /locus_tag="PXG19_001935"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL6067207.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            1633..2616
                     /gene="cysB"
                     /locus_tag="PXG19_001936"
     CDS             1633..2616
                     /gene="cysB"
                     /locus_tag="PXG19_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL6067208.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            2617..3261
                     /locus_tag="PXG19_001937"
     CDS             2617..3261
                     /locus_tag="PXG19_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067209.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(3335..4384)
                     /gene="ansB"
                     /locus_tag="PXG19_001938"
     CDS             complement(3335..4384)
                     /gene="ansB"
                     /locus_tag="PXG19_001938"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL6067210.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            4648..6285
                     /gene="pyrG"
                     /locus_tag="PXG19_001939"
     CDS             4648..6285
                     /gene="pyrG"
                     /locus_tag="PXG19_001939"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL6067211.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            complement(6453..7049)
                     /gene="nfuA"
                     /locus_tag="PXG19_001940"
     CDS             complement(6453..7049)
                     /gene="nfuA"
                     /locus_tag="PXG19_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL6067212.1"
                     /translation="MEEQTIHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAE
                     CGVSYCPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNA
                     KMRKVADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSM
                     VDVTLKEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
BASE COUNT         2112 a         1291 c         1512 g         2134 t
ORIGIN      
        1 accactcaat gcattgaaag catttgaatc tgctgcacgc catttaaatt ttactaaagc
       61 ggcagaagat ctcttcgtca cacaagctgc agtgagccac caaattaaac tattagaaga
      121 ttttttaggt gcttccctgt tccatcgccg taaccgtttg ctggaattaa ctgagttagg
      181 cgcacaatat ttctatgaag ttcagccatt attagaacaa attgctctcg caacagataa
      241 aattaggcag caaagtagtc gtcaaattct gactattagc gtaccacaaa catttggtat
      301 gcattggtta gtcccacgtt tggcggattt ccacgaaaaa tatccagaag tggaagtacg
      361 tattaagggt gttgatcaag atgagggatt attaggtaaa gaaacagatg ttgctattta
      421 ttatggtaag ggggattggc aaggtctgga atctatccgt ttgacggaat cccgtattgt
      481 tattttagct tcgcctgagt atttatcgca aaataccatt catttaccgg cggatttagc
      541 aggtaagcat ttattacatt cctccaccca taataagtgg aaaagaatgg ttgaacattt
      601 gcatatagaa gatatagtag atgcggaaac tggctcaatt tttagccata cttttatggt
      661 gcttcaagct gcaatgcacc aacaaggcat tgcgattgcc aaccagttgt tggcacagca
      721 cgaaattgaa aaaggtactt taatagagcc tttcccaacc acattgtttg atgaaaaatc
      781 gttctatgtt gtctatcctt cgcaatcagc ccaagttcag aaagtacaat tttttgttga
      841 gtggattcag caaaaaatga aagagtgttg tgcttaagcg tggctttatc agcggtatgc
      901 gaaaaattag aaaaatttga ccgcttgtta tctaagttaa aaaaggaata ttatgaaata
      961 tcaatgggta ttatttgatg ctgatgaaac cttgttttca tttaattctt atcttggttt
     1021 aaaagcgatg ctggctcgtt accaaattga ttttagtgaa caagattatc aagactttca
     1081 agcggtaaat aaaccacttt gggtggctta ccaaaataat gagatcactg ctcaagatat
     1141 tcaaaccaga cgttttgtaa aattatctgc tcaaacaggc gtagatccgc tacaacttaa
     1201 tcaagagtta atggcggaga tggcattcgt cagtcagcct ttagaaggtg taatggatat
     1261 gttaaatgct ttatatggta aagtaaaaat gggcattatc accaatggtt ttaccgattt
     1321 gcagcaaaaa cgtttagata atactcaaac ttcacatttt tttgatattg tagtgatatc
     1381 agaacaaatt ggtgccgcaa agcctgatcg ccaagtgttt gattacgctt ttgcattaat
     1441 ggacgaattt gatcgtacta aagtgcttat ggtaggcgat accctcgctt ctgatatttt
     1501 aggaggtaat aatgctggaa ttgatacttg ttggttaaat ttgcttagta aagagaatga
     1561 tacggatatt aagccaactt acgaagtgca tacgatgcaa cagattattg cgattgtaga
     1621 ggggaaatca ttatgaagct acaacagtta cgttatatcg ttgaaatagt aaaccagaac
     1681 ttgaatatta ccgaggccgc agaggtgctt tacacttctc aaccggggat tagcaaacaa
     1741 gttcgtttgt tggaaagtga gttgggaatt aatatttttg agcgtaacgg taagcacgtt
     1801 aaggggctaa cgcctgctgg tgaaaaaatt gtggcgattg ctcgtgaatt attggtaaaa
     1861 gcccagagca ttaaatcggt tgctgaagaa caaactcgac ccaacaaagg catcttacgc
     1921 attgcgacca ccaataccca agcccgttat atgctaccga gtgtaattga gaagtttaag
     1981 gctcgctatc ctgaagtaag tttgcatttg caccaaggct ccccgaatca aatttatgat
     2041 gctttggtgg ctggagaagt ggatttagcc attaccacag aagctcaata tttatttgat
     2101 gaagcggttt tattgccgtg ttattggtgg aatcgttcag ttattgtcaa accagagcat
     2161 cctcttgcgg cttttgtgaa ccaaagtaaa aatttgactg tcgaacaatt aggtagatat
     2221 gatttgataa cctatacttt tggttttaca gggcaatcgg atttagatca tgccttcaat
     2281 aaggaaggta ttttgcctaa tatcgtattt acggcgacag atgctgatgt aatcaaaact
     2341 tatgtacgct taggcttagg ggttggtatt atggcatcaa tggcacatac ggaaacggat
     2401 aaagacttag tcgctatcaa tgcaagtcac ctgtttcaac cgagtatgac gcaaatcgcc
     2461 tttaaacgag gaacttttct tcgtaactat atgtatgatt ttattaatta tttttcgcca
     2521 catttaacac gggtacaagt ggagaaagcg gaacaattac gagataacaa tgcaatttca
     2581 aggttgttcg aaagtatatc tttagaggag aaatagatga gaatttggca gaagttagcg
     2641 agcgtaatcg tggtcacttt gggcttgatt tcaaacgcca gtgcggagaa ttttaagttg
     2701 aaatacagct caaattattt aatgccagcc tacattaact ttaataacgg tggtggccaa
     2761 tataatattc aggcaaaaat taatgtgcct ttatataata ttgtcttttc tgcgaaggga
     2821 acagaaaaaa acgaacaatt tcatatgttg agctaccgag atacccgtaa cggcaaaact
     2881 tatgcgatgg cagaaattga ttctaaaacg gtaaaatatg gcaaagtgaa agagccacta
     2941 aaagaagaag cgctgactat gccaacttat gatttgttca ccacagcctt tcagttgagc
     3001 tattacgata aattaccgag cagttttcaa actactaacg gtaaaaaact ttacccaaca
     3061 ccgaatgtgc agctacgcaa agcccaaaaa gaggtaaaag taggcggcaa aacctaccaa
     3121 gaaattacct acaagtttag aaccagtgat aaaaaagaca ttacggtgaa aaaatttgaa
     3181 ggtgaaaaat tccctcgcta tatcgcctat agtcgtgatg gcgacaatta tgagctaact
     3241 tttgatagct ttgtaaaata ataaagatta gtaatgagac aagcggtcta ttttgtgatt
     3301 tgttttgcaa aatagaccgc ttgttattta ctttttagaa atcttcaaaa tattgttgaa
     3361 tagtttttat atcatttgtt tgtgttaagg cgagctgcag taatactcga gctttttgag
     3421 gatttaatgt gccggaagca ataaaaccat acttgctatc atcaatttct gcatctcggg
     3481 tagtatatcc ggttggcact cgagacgagc gaaccacggt aattcctttt ttagctgctt
     3541 cttcaagtaa agccaaatta gccgcattca tattgccatt gccaactcct gcaaccacga
     3601 tgccttgata actcgcatct aataatgctt gaagcggttc ggttggcata tttgaataag
     3661 cataaataat gccgactttt ggcaattccg ttaattcatc tactttgaaa ggggtgttta
     3721 cggtgtgttt actttcagga gagcgctcat aatcaacttt gctattatgg atatagccta
     3781 gtgcgccaaa gtttggtgag ttaaatgttt gcactgatgt agtactggtt tttgtaacat
     3841 cgcgagcgcc caatacaata tcattcattg caaccaacac ccctctgcca ctagatttag
     3901 aatctttggc gacaacaact gagttatata aatttaatac gccgtcggca cttttttcag
     3961 ttgctggtcg catggccccc actaatacta cgggtttttc gcattttaca gtcatatcaa
     4021 ggaagtatac ggtttcctcc atagtgtctg tgccgtgcgt aataacgaag ccatctgtgt
     4081 ttgggcattg ttgattaatt gcttttgcca gttttagcca tacttcatca gacatatcct
     4141 gagatccgat tttaacgatt tgttctcctt tgatatttgc taatttttta atatccggga
     4201 cggcttctat gagtgtttca atatttagct gcccagcttg ataagctgag gttgccgtat
     4261 ttttttggct accggcaatt gtccctccag ttgcaagaat tgtaatatta ggtaggtcgg
     4321 ctgcttgaat tggcatagta gcaatgctta acagagttgg cagtagtaat tttttgattt
     4381 tcattgtatc gtctccagta ttagaaaaac aggtattatg atatctataa acatgtaggt
     4441 taattctgat ctatcgcaaa taatagtgta ttaattaaga ttagtcggca ttattgaaaa
     4501 aagaattaat ctgactgctt gccgattttc cattagcaaa aaaatgtaat ttgatgtaaa
     4561 ctactttccc gtcctgatag tttctttttt acgaagtaaa ctgatattct gaatttccaa
     4621 cctaatcaat cagcaaaggc aatcacaatg acaacgaatt atattttcgt cacaggcggt
     4681 gttgtatctt ctttagggaa gggtattgcg gcagcctctt tagcatctat tctggaagct
     4741 cgtggtttaa atgtaaccat tatgaagctt gatccttata tcaatgtcga tccgggtaca
     4801 atgagtccaa ctcagcacgg ggaggtattt gtgaccgaag acggtgcgga aaccgatttg
     4861 gatttaggtc actacgagcg ttttatccgt tcaaaaatga gcaaagccaa caactttacc
     4921 agcggtaaaa tttactctga agtgttgcgt aaagaacgcc gtggcgacta tttaggtgca
     4981 accattcagg ttattccgca tattaccaac gagattaaag cccgtgtgtt agaaggcggt
     5041 aaagggcgtg atgtcgccat tgtagaagta ggtggcacgg tgggggatat tgaatcactg
     5101 ccattcttag aagcactccg ccaattagcg gtggatatcg gtcgtgaaaa aaccttgttt
     5161 atgcatttaa ccttagtgcc ttatattcca accgcagggg aagtgaaaac taagccgact
     5221 cagcattcag taaaagagtt gctttcaatc ggtattcagc cggatgtgtt aatttgccgt
     5281 tcagatcgtg ctattccgga aaatgagaag aaaaaaatcg cccttttctg taatgtgccg
     5341 gagcgtgcgg ttatttcgct taaagatgta gattcgattt atcgcattcc ggaattattg
     5401 aaatcgcaag ggttagattc ctttgtgtgc gatcgtttcc gtttagattg caaagaagcc
     5461 gatctttcag agtgggaaca agtgctatac tgccaagcaa acccaaccgg cgaagtgact
     5521 atcggtatgg tcggaaaata tgtggaatta cctgatgcgt ataaatcggt gaatgaggct
     5581 ttgaaacacg caggtttaac gcatcgttta acagtgaata ttaaatacat tgattcacaa
     5641 gatattgaaa ccaaaggcac agagttattg gcaggcttag acggcattct tgtgccgggc
     5701 ggctttggct atcgtggcgt ggaaggcaaa attcgaaccg cacaatatgc ccgtgaaaac
     5761 aagattcctt acttaggtat ctgtttaggt atgcagatcg ccctaattga atatgcccgt
     5821 aatgtggcag gtttaaccga ggcaaattct tctgaatttg ataaagattg ctcacagccg
     5881 gtgattggct taattaccga atggcaagat gcggaaggga atgtggaaac ccgcagcgat
     5941 gagtcagatt taggtggtac aatgcgttta ggctcacaac aatgccattt aattgaaggc
     6001 tcaaaagctc gtgagttata tggtgcggaa acgattgttg aacgtcatcg ccaccgttac
     6061 gaagtaaaca ataagctgtt accacaaatt gaagcggcag gcttaaaagt gagcggttta
     6121 tcggcagatc gtaaattagt ggaaattatt gaagtgccaa atcacccttg gtttatagca
     6181 gcacaattcc atccggaatt tacctcaact ccgcgtgatg gtcatccatt atttgcaggt
     6241 tttgtgaaag ctgcgaaaga tcaccaagag agtcgtaagg cttaatcaaa cttaacaagc
     6301 ggtcgaattt actcattttt ttgtacaaac gcttgcgttt gaacatcggc tttgctgatg
     6361 gcacgaagtg cgagcgaaag cgagtaaatt tgaccgcttg ctcattaatt ataagaaagg
     6421 gataaatcaa tgatttatcc cttttagtat ttttaatagt aagaatgttc accgtgttgg
     6481 tgttcggtaa tatctttcac accaactaat tcatcaggga acattgccag aagctgtttc
     6541 tcaattccct cttttaaggt cacatccacc attgagcaac cgttacaacc accgccgaat
     6601 tgtagcacgg catatttatc ttcggtgatt tcaattaagg tcactttacc gccgtggctg
     6661 gcaagttgtg gattgacttg ggtttgaatc acataatcta aacgctcgat aaacggtgca
     6721 tcatcagcca ctttacgcat tttggcgtta ggggctttga gggtaagttg tgaacccatt
     6781 gggtcggtta cataatcaat ttccgcttcg tctaaaaacg gtaagctaat atcatcgaca
     6841 aatgcagaga aacggttaaa tttaaattcg gtatccgtct cttcaactgc attgggtggg
     6901 cagtaagaga caccgcattc tgcccccggt gtgccgggat tgaccacaaa aatacggata
     6961 ttagttccct cttcttgctg ttctaatagt ctggcaaaat gggcttgtgc tgcatctgat
     7021 attgaaatat gaatggtttg ttcttccat
//
LOCUS       DANMGB010000129         6998 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.129, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000129 DANMGB010000000
VERSION     DANMGB010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6998
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.129"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXG19_001941"
     CDS             complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXG19_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL6067213.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
     gene            complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXG19_001942"
     CDS             complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXG19_001942"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL6067214.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            complement(908..1639)
                     /locus_tag="PXG19_001943"
     CDS             complement(908..1639)
                     /locus_tag="PXG19_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL6067215.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXG19_001944"
     CDS             complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXG19_001944"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL6067216.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            3790..4773
                     /gene="epmA"
                     /locus_tag="PXG19_001945"
     CDS             3790..4773
                     /gene="epmA"
                     /locus_tag="PXG19_001945"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL6067217.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            4855..5745
                     /gene="rarD"
                     /locus_tag="PXG19_001946"
     CDS             4855..5745
                     /gene="rarD"
                     /locus_tag="PXG19_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6067218.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(5756..6367)
                     /locus_tag="PXG19_001947"
     CDS             complement(5756..6367)
                     /locus_tag="PXG19_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6067219.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(6395..6930)
                     /locus_tag="PXG19_001948"
                     /pseudo
     CDS             complement(6395..6930)
                     /locus_tag="PXG19_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         2044 a         1577 c         1351 g         2026 t
ORIGIN      
        1 atcttttttg cagatattta atacaaaacg atcgttttat cggcaaaatt tctaatattt
       61 gcaaattttc ttataaattc gaccgcttgt tagcatatta aaaatgaaaa gaccatctgc
      121 tttatacaag atggtctttc tcatttaaat ctgcacgact gcgatgatta ctagaattgt
      181 gtataagata gacaatccgt agaaaatcac attacctgct ggcgtgtgaa ctttcaggtc
      241 gtgtaatcca tgatggatac ggtgcattcc tgcccacata gggaaaatcg ctaataccat
      301 aatagcgagc ttgccgatcc aagtatgggc aaaggaaatg atattatctg gtgatactaa
      361 cccgaatggc agtaataaac cgataataaa gattaccaca gggaaaaata atgcacttac
      421 cattccccca gcactaaaaa gcaaccatac cggcggttca tttgaacgtt ttgggttttg
      481 atcaagactc attttcttcc ccttcttaaa tataaaccaa gattaatgca attacgctaa
      541 ttacgcctgt tgctgcccaa agaatatttc ttccaaccga gactggtaag tgtttacctt
      601 taaccatcac ggacatgacg gcaggtgtca tcacaaaaag tgttgccgca tgatataaca
      661 ttgctgccaa tgaaattatg tttaggataa caactaacgg attttgtaag aaatccacaa
      721 aatcggtagt aaatgttcct ttacttaacg caactgctcc ataaaataat acaatgcaga
      781 accaaacagt tggaagacag gtagcttcac gcaccatata cattttatag aagtcgagtt
      841 ttttccacca gctggctttc attcccctta cataaggtct acgttttgtt gctgacattt
      901 cttcctccta tctcggtttg atcattgaga taacataatc tttcgcactt tcaagtttac
      961 cttggtttac agccgaagca gggccgacgt gtttcggaca gacttccgag cagtaaccca
     1021 cgaaagtaca gctccaaaca ccgtttttgc tgctgagtag cttcatacgc tcttcacgac
     1081 cattatcacg gttatccaag ttatagcggt gagccaatgt aatcgcagca ggtccgataa
     1141 attcagggtt caaaccaaat tgtgggcaag ccgcataaca taaaccgcag ttgatacaca
     1201 ttgagaattg acgatatttc tctaattgtg ccggcgtttg tttagtacgc tgtccttccg
     1261 gtgctttatt atcaataata taaggtttaa ttgcctcgat gctatcaata aagtggctta
     1321 aatccactac taagtcacgc tcaatcggga agttcgccag cggctcaatt cgcataaaac
     1381 cgctgtaatc acgcaggaat gttttacaag ctaacttcgg cttaccgttt accatcattc
     1441 cgcaagaacc acaaatcgcc atacggcaag accagcgata agaaagttcc ggttctaatt
     1501 cgtctttaat gaagcccaat gcatctaaaa gtgaagtttg gctgtcatac ggcacttcat
     1561 atctgtctaa atgtggctcg ctatctgatt cagggttgta gcgtagcact tcgatggtca
     1621 ttttatctaa atttgccatt ttactactcc ttctctattg ttgtgcttga gcttctgctg
     1681 cttttttgac tttttcttgg gcttcagcct ctgcaccata cacacgttta gccggttgtg
     1741 atttagtgat tttcacatcg ctgtatttaa tcgtcggtgt accctctgca ttgtagtacg
     1801 cttgtgtgtg ttttaagtag ttcacatcat cacgctcaac atagtctaaa cgttggtgag
     1861 ccccacgaga ttctttacgc tctaccgcag agcaagcaat ggattgagcc acatctaaaa
     1921 tgaagcctaa ttcaattttg tagagtaaat cagtgttaaa cacacttgat ttatctttta
     1981 cgctgatgtt tttataacgc tcttttagct cttggatttt gtttacagtc gcttccatac
     2041 tttcttgggt acggtaaata ccacaacctt cttccatcgc atcacccatt tggttacgga
     2101 tatccgacca agattcatta ccctcttggt tcgctaatgc gtgcaagcga gccaccacat
     2161 cttttgcttg tgcatcaatt tgtggctggt tgcgagcagt cacttctaac gcacggcgag
     2221 ccgcattttc accggcaact ttgccgaaca ccacaagctc tgctaatgag ttagaaccca
     2281 aacggttcgc accgtgcaag cctgatgaag cacattcacc tactgcgaat aagcctttaa
     2341 ttgaggtttc cgcattcata tccacttcaa taccacccat cgtgtagtga accaccgggc
     2401 gaacaggaat cggcgcttta gccggatcga ccccttcata ggctttcgct aattcacaaa
     2461 taaacggtaa acgctcaagt aaatattttt cacctaaatg gcgtaaatct aagtgaacta
     2521 cgtccacgcc ttttgcggtt tttaaggtgt tccctttacg ccattcttgc cagaatgctt
     2581 gtgaaacctt atcacgaggg cctaattcca tatatttgtt ttccggtttg ccgataggtg
     2641 tttccggtcc taaaccataa tcttgcaggt aacggtagcc atctttatta actaaaatac
     2701 caccttcacc acgacaacct tctgtcatca aaataccggt atttggcaaa cctgttgggt
     2761 gatattgtac gaactccata tcacgcaaag ccacaccgtg acgatacgcc attgataaac
     2821 cgtcgccggt tacaataccg ccgttagtgt taaagcgata agtacggcag ccgccaccgg
     2881 ttgcaatcac aactgcattt gcattgattt gaacaagtgt gccttccatc atattcattg
     2941 ccacacaacc acgagcttcg ccgttgtcgg tgagaatatc cagcacaaaa tgctcatcaa
     3001 aacgcacaat attcggatat ttaatcgaag tttggaacaa agtatgcaaa atgtggaaac
     3061 cggttttatc cgccgcaaac caagtacgct caattttcat tcctccaaaa cggcgaacat
     3121 tcacttcacc gtcttcacga cgactccaag ggcaacccca gcgttctaat tgtgtcattt
     3181 caatcggcga atgctctaca aaatactcca caatatcttg ctcacataac cagtcaccac
     3241 caccgacggt atcattaaag tgattgtcga aagagtcggt atctttaatt accgccgctg
     3301 aaccaccttc tgctgcaacc gtatggctac gcattgggta aacttttgaa attaaagcaa
     3361 tttttagatt tggatttgct tcagccgccg caatagcagc acgcaagcca ccaccaccgg
     3421 cacctataat cgcgacatca aaattaacac tttgcataat gcactccgaa agttaaataa
     3481 cttaattcat taaaaagtaa tcatattgtg ccactatttg agcaatgaga taacctattt
     3541 ttacaaattt gtaacataaa aaatgtaatt ttgtgatcta cctcaaaaaa ggtaataaag
     3601 cttcataaag gtattgagaa tggctcttaa ttggacagtg atagaaagaa aatttctaat
     3661 gtttaaaatg agaaaattta atttgttgca aaaaagttaa aaccctctct ttatttttct
     3721 tgatcggtaa ctagggcaac tcactttttt aggctaaaat agcctcacat tttcaagcgg
     3781 tcatttttta tgaacaattt acaactcgat aatattgatt ggcaaccaac agcctctatt
     3841 cctcacctga tccaacgttc aaaaatcatt acggaaatcc gcaagttctt taccgatcga
     3901 gggcttttag aggtagaaac cccgatttta agcgaatttt cggtgacaga cgttcatctt
     3961 tcgactttca atacgcagtt tcaatcgcct ttttcccctg aggcgaaaac actccatctg
     4021 atgaccagcc cggaatatca tatgaagcga ctacttgctg ctgggagtgg accgattttc
     4081 caactgtgta aagtatttcg caacgaggaa gccggtaagc gacacaaccc tgaatttacg
     4141 atgctggagt ggtatcgccc gcattttgat atgtatcgct taatcaatga agtggatgat
     4201 ttactgcaac aaattttgga ctgcgaaccg gcagaatcat tcagctatca atttgtgttc
     4261 caaacctatg tcggattaga tccgctttct gccaccaaag cacaacttgt ggaaaaagcc
     4321 cgaaaacacg gcttgcaatg tgatgatgat gaacagcgtg acaccttgtt acaattttta
     4381 ttcagcgagg ttgtcgaagc caatatcggg caagaaagac caactgccgt ttatcatttc
     4441 ccttccaccc aagcggcatt agctcaaatt agctcggaag atcaccgtgt tgccgaacgt
     4501 tttgagtttt actacaaagg cttggaactc tgtaacggct tccacgaatt agacgatgct
     4561 gatgagcaaa ttcatcgctt cgagcaagat aatctgcaac gtgaaaaaat ggggctggag
     4621 ccacagcaac tagatgtgcg ttttcttgcc gcactcaaag cgggttttcc aaactgctca
     4681 ggtgtcgccc ttggggttga taggctgtta atgctggcaa tggatgcgga aaaaattgaa
     4741 gaggttattt ctttcggcat tgaaaaagcc taatttttta tgccgttttg tgatttgcaa
     4801 tttgcaaaaa aatcgacaaa tatgaccgct tgtacactcg tttaggaaag caaaatgaat
     4861 atttcaggca aattacaggg ttggcactat gccctactgt gctacttaac ttggggaacc
     4921 tttccgattt attggtatcc gatcaaccaa tcgggaatgc ctgccgagca aattttggct
     4981 caacgggtgc tttggtctgc cctatttgct gtgtttctgc tgctgatttt ccaacaaggg
     5041 cgagcggtta ttaatgcctt taaacagcca aaggtactcg ggctgttcgt gctttcttct
     5101 tttatgattg gcgtgaactg gctggtttac ttatgggcaa tcgtcaatga gcatatttta
     5161 gatgccagtc taggttattt tatcaacccc attttcaacg tgtttgtcgg taggcttatt
     5221 ctaaaagagc agctgaataa agcccaatta ttggctctgc tgtttgcaat tagcggcatt
     5281 ttatggcttg ctattcctgc cggacaaatt ccgtgggtcg cattgattct agccgccagt
     5341 ttctgtattt acgggctgat tcgtaaactt gccccaatgg aacctttgtc tggtttggcg
     5401 ttagaaactt tgctgatgtc gccttttgcc atcacctatc tctgcttttg ttaccaccaa
     5461 aacattttgg tattcagtga actcaatcct ttacaaatgg cagtgctact ctgctccggc
     5521 attgccacta ccttaccatt gctatggttt gcaatgggtg caagacgcat ttcaatgtcg
     5581 ctactcggta tgctgcaata tatttcacct accctgcaat ttttatgcgg tgtgctgatt
     5641 tttaatgaga cactttccgc cgaacgtgct gtaggctaca ttctggtttg gattggggtg
     5701 ggggttttct tattgggtat gaaaaaagct ggtgtcaaac gctaaaaata aaacgttaaa
     5761 tatttcgttt tggtagccct aatgcagcaa aaccaagtag tggcaaatag gcacaggctt
     5821 taaaaatact ctccaagcca tattcatccg caaaaaaacc caatacggcg gcacttaagc
     5881 cgccaatacc aaacattaaa ccgaacattg tgccggaaat cagccctact ctgcctggta
     5941 cggcttcttg agcataaacc accatagcgg agaacgctga tgacataata aaaccggcaa
     6001 aaatcgcaca cacaatcgtc caaaagagat ctgcgtgagg caacaacaaa gcaaaaggtg
     6061 ccatacctaa gaaagagaac caaatcaccg catttcgtcc aatcttatcg ccaatcggcc
     6121 cgccgacaaa agcgcctaaa gcaactgcac ctaaaaaggt aaatagagag agctgtgcca
     6181 ttgctatatt gagttggaat ttttccatta aataaaaggt gaaatagtta ctgaggctcg
     6241 caatataaat aaatttcgct aacatcaata aagcgataat taataatgct ctggctaata
     6301 atttaccgtg taagcgttgt tgaatatggt ttggtgaaat aatgagcggt ttggcttcat
     6361 atttcaccca acggcttact ttatataaaa cccatcataa tgccaataat acaaatgcaa
     6421 caacccaaat caccgcactt tgccctaacg gcacaataaa taatgcaact aagagcggac
     6481 ctaacgccga tccactgttt ccacctactt ggaaaagcga ctgagctgta ccaaatttac
     6541 cgcccgatgc cattcgagcc acccgagagg cttcagggtg aaaaatggca gagcctatcc
     6601 ccattaacgc agcggctatc agtaacacgc caaaattcgg cgaaaaggca agtaaaatca
     6661 cggaaagaag cgtaatcagc atactgacgg gcaataaatt cggttttggg tatcggtata
     6721 aagcccaata cccggctgaa taatagatgc ggtaatttga taaatgagtg aaatcatacc
     6781 aatttgagca aaactcagtt ggtaattttc ttttagcatt ggatagatcg aaaccattac
     6841 tgcttgaact aaatcattca acaaatgaga aagggaaatc agcagtaaaa tgggcaaaac
     6901 cattttttga gcgttatgtt gtgtgtgcat tctttattcg ttttttataa atgaaaaata
     6961 ttctactcgc aaataatgaa tgtgcaagcg gtcaaatt
//
LOCUS       DANMGB010000130         6961 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.130, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000130 DANMGB010000000
VERSION     DANMGB010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6961
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.130"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            4..1266
                     /locus_tag="PXG19_001949"
     CDS             4..1266
                     /locus_tag="PXG19_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL6067220.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            1411..2187
                     /gene="deoC"
                     /locus_tag="PXG19_001950"
     CDS             1411..2187
                     /gene="deoC"
                     /locus_tag="PXG19_001950"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL6067221.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            2208..2927
                     /gene="deoD"
                     /locus_tag="PXG19_001951"
     CDS             2208..2927
                     /gene="deoD"
                     /locus_tag="PXG19_001951"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL6067222.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(3003..3854)
                     /locus_tag="PXG19_001952"
     CDS             complement(3003..3854)
                     /locus_tag="PXG19_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL6067223.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            3969..4400
                     /locus_tag="PXG19_001953"
     CDS             3969..4400
                     /locus_tag="PXG19_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL6067224.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            4417..5097
                     /locus_tag="PXG19_001954"
     CDS             4417..5097
                     /locus_tag="PXG19_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL6067225.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            5161..6285
                     /locus_tag="PXG19_001955"
     CDS             5161..6285
                     /locus_tag="PXG19_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL6067226.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            6369..>6961
                     /locus_tag="PXG19_001956"
     CDS             6369..>6961
                     /locus_tag="PXG19_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL6067227.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKAL"
BASE COUNT         1955 a         1410 c         1592 g         2004 t
ORIGIN      
        1 tctatgggta ctcttaacag ctttttaggc attattgttt tactattcat tgcattttta
       61 ttttcgagca ataaacgtgc aataaacgtg cgtaccgtat taggcgcatt agcattgcag
      121 gtagctattg gtgcattggt gctttatgtg ccggcagggc gtgatgcctt gaatgcgatg
      181 gcaacaggtg tgtcaaaagt gatttcttac ggtaatgaag ggatttcatt tttattcggt
      241 ggcttagtca gcgacaaaat gtttgaagta tttggcggcg gcggctttgt gttcgctttc
      301 cgtgtacttc cggtgattat tttcttctct gcactcattt ctttgcttta ctacattgga
      361 gtgatgcaat gggtaatccg tattttaggt ggtttattac aaaaagcatt aggtacatct
      421 aaagcggaat ctatgtctgc ggcagctaat attttcgttg gccaaactga agctccattg
      481 gtagtaaaac cttatatcag caaaatgaca gaatctgaac tctttgcgat tatggcaggg
      541 ggcttagctt ctattgcagg ttctgttatg gctggttacg caggaatggg cgtaccatta
      601 acgtacttaa tcgcagcctc ctttatggcg gctccggcag ggttattatt cgccaaaatt
      661 atggtgccac aaaccgaaaa attccgtgat gaactagaag cggtagattt agaaaaaccg
      721 gcaaatattc ttgatgcagc agcttcaggt gcttcttcag gtatgcaact ggcattaaac
      781 gtaggggcaa tgttaattgc attcgtggcg ttaattgcat tagtgaatgg tattttagga
      841 ggtattggcg gctggttcgg ttatgatacc ttaaacttag gtcaaatttt cggctgggta
      901 tttaaaccgc ttgcgtgggt aatcggtgtg ccttgggaag aagcagaaat tgcggggcag
      961 atgatcggct taaaattagc ggtaaatgaa ttcgtgggtt atttagagtt tgctaaatac
     1021 ttagctcctg agtcaaccgt acatttaacg gataaaactg ttgcgattat tacctttgca
     1081 ctttgtggct ttgcgaactt cagctcgatt gcgattttaa tcggtggtat cggggcaatg
     1141 gctccaagcc gtcgtggtga tattgcccga cttgggatta aagccgtcat tgctggctca
     1201 cttgccaact taatgagtgc aaccattgcc ggcttgttta tcggcttggg tggagcagtt
     1261 ctctaatcca gtttgtataa aaccactaga aatagtggtt ttatcttttt ttatctgacg
     1321 taaacggttg cttttggttt gtctatttac aagcggtcag atttttataa aattttacca
     1381 accaccacgc atttaataaa aggagacact atgaatttaa aaaaatccgc tgagattgct
     1441 ctttcgttga tggatctcac cacattaaat gacaatgata ctgatgagaa agtcatcgca
     1501 ttatgccaac aagcgaacac caagtttggc acaccggcag caatttgcat ttatccacgt
     1561 tttatcccga ttgcccgcaa agcattgaaa cagcaaggta tcgagcaagt aaaaattgcg
     1621 acagtcacga atttccctca cggtaatgat gatattgaaa ttgcggtagc tgagaccaaa
     1681 gccgcagttg cttatggggc agatgaggta gatgtggtat tcccttataa agcattaatt
     1741 gcaggtaatg agcaaatagg tttcgacttg gtaaaacaat gcaaagcagt ttgtgctgcc
     1801 aataatgtgt tgcttaaagt gattattgaa accggcgagt taaaatcagc agagcttatt
     1861 cgcaaagcaa gcgaaatttc gattcaagca ggggctgatt ttattaaaac ctcaaccggc
     1921 aaggtggcag tgaatgctac ccttgaatct gcccgcatta tgcttgaaac cattcgtgat
     1981 ttaggtgtgg cagaccgtgt tggctttaaa gctgcaggtg gggtaaaaac ctcggaagaa
     2041 gccgcccaat atcttgcact tgcggaatct attttaggca atgactgggt gagtgcatca
     2101 cattttcgct tcggtgcatc aagtttatta gctaatttat tagcaacatt gaatgatgaa
     2161 cagcagcaag ctgttcaagg ttattaatta ataaagagga acataaaatg gctactccac
     2221 acattaacgc acctgaaggt gctttcgctg acgttgtaat tatgccgggc gatccgcttc
     2281 gtgctaaata tatcgctgaa acctttttag aagatgcaaa agaagtgacc aatgttcgca
     2341 atatgttagg ctacaccggc acttataaag gtcgccgcat ttcagtaatg gggcacggta
     2401 tggggattcc atcttgctcg atttacgcta aagaattaat tactgaatat ggcgtgaaga
     2461 aaattatccg tgtcggctcg tgcggtgcgg tacgtaatga tgtcaaagtg cgtgatattg
     2521 tcatcggtgt tggggcttgt accgattcta aagtaaaccg tattcgcttc cgtgataacg
     2581 attttgcggc gattgctgat tttgatatga cattagctgc tcaccaagca gctaaagcga
     2641 aaggcattga agctcgtttc ggtaatttat tctcagccga tttattctac tcacctgatg
     2701 tcgaaatgtt tgatgtaatg gaaaaatacg gcattttagg cgtagaaatg gaagcagcag
     2761 gcatttatgc ggtagcggca gagtatggag caaaagcatt agcaatttgc accgtttcag
     2821 accatatccg caccggtgag caaactacct ctgaagaacg tcaattaacc tttaatggta
     2881 tgattgaaat tgcgttagag tcagtattaa ttggcgataa gcagtaattt ctaacctgac
     2941 aagcggtgaa attttgcaaa aaatttgcag aatttgaccg cttgttattt ttgattcttc
     3001 ctttatcttc ctttcgggct ttcgccaaac tgccttttat attctcgact aaactggctt
     3061 gggctttcat agccgacttg ataggcggtt tcactcacgc ttactcctgc ttgtagtttt
     3121 tcccttgccg catttagtct taacgatttc tgatattgca gtggtgtcat tgaagttacg
     3181 cttttaaaat gagcgtaaaa ccccgccacg ctcattccta cctcttcagc cagtgctgac
     3241 atatttagtg tatcggcaaa ttttctttct aagatttttg ttgcattggc aattttagca
     3301 atattgccat cttgagagag tagagagcgt atatagccac cttgctcaga ttgtaataaa
     3361 tagaaataga gttcgtttaa tatcaatggt gcaagaaaat gaatatgatt tggagaatta
     3421 agcaaattta gtaagcgtaa caaacagtct ttaatttcat tctccagctc ccatttagtg
     3481 cgttgattaa tgttttcact tattttctgt gggggaagct gcgtgataat tttggcaata
     3541 agatcaaaat ccaagcgtag tgaaatcgca agataaggct gattttctgc aactgataag
     3601 gtttgggtaa caatcggcaa attcacaggg caaaacatca tttcctgatt accgaagact
     3661 tggcaatgtc cattggtaca gatttgccgc tcgcctaata atactacaca taaacttggg
     3721 tcttggatat aaccgttaaa tctaatagaa cgatcggcag cgtgaacggt tagccctgaa
     3781 atgggagtag cccaaagttc atttttcgga gcgagggcaa aaatagattc aataatagct
     3841 cgatgagttt gcataataat ctcactttta gaaaattagg catattttat agaaaatcag
     3901 gcaagacgac aaatagcaaa aagcggataa tatccccaat caaataaagc atttaatagg
     3961 agcaaaatat gaaaattttt tatcacacat cagcaactgc aaccggtggt cgtgacggca
     4021 gaacccaagt ggatgacggt tctatcggtt ttgatttagt cggtttccaa aatgaaagtg
     4081 gcaaagtagg cactaatccg gaacaattat tcgcaatggg ctatgctgcc tgctttgaca
     4141 gtgcaatgaa tcacgttgcc ccaaccttag gcattaagcc aaccaaatcc agtaccactg
     4201 ttgcagttgg gattggtcaa aaagctgatg gtgctttcgg cttagattta gatattacca
     4261 ttactgtgga aggcattagt gcggaagaag cgaaaacttt aattagcaag gcacacgaag
     4321 tttgcccata ttcaaatgca acccgtggta atgtagatgt gcgtttacac gttaaagtcg
     4381 tgagtgaatt tgacttataa aaaataaata ggggaaatga aaatgttaga ttttgaaacc
     4441 acggtaaaaa cacgacaatc aatccgcaag tttttaccgc ttccgatgac ggaaactgaa
     4501 atcaaacaaa ttcttgccga tgcacaaaat gccccttcgg cttgtaatac acagccgtgg
     4561 ttagtacacg ttgcctctgg tgaaacgcta gcacgcttaa aagctcgttt taaaaagact
     4621 tttgaagcgg gcattaatga tgcggatttt gagttcaatc aaacgaaatt taccggtgac
     4681 tacgaaccac gttggcgtaa ccaatacagc cacgttttta ccaccagcta tggcattccc
     4741 cgtgaagata aagccggtcg ccaagtggtg tatgatgaca atattgtcgg ttatggtgcg
     4801 ccacatatgg cattcctatt tatgccaagc attgacggac acgatgtcaa tattgccagc
     4861 gatgttggta tgtattcgca aactttcttg ctctcactca ccgctcgtgg ttttggcggc
     4921 attccgcagc ttgcccttgc gatgtttgct aaagatgtgc gtgaagagtt aggcattcct
     4981 gaacattaca agctcctcca cgccatttct ttcggacacc cagattggga cgctatgcag
     5041 aacaaacacc atttagggcg tgtgccggtg gaagagagtg cgaccttaca ttggtaataa
     5101 acaagcggtt gatttttcgc aaaaatttgc gaaatcaacc gtatttttta ggagaatacg
     5161 atgataaatt tatttacccc ttatactctg aataacgatg tagaaattaa aaaccgcctt
     5221 gtagttgccc caatgaccca ttccgcctcc aacgatgacg gcacaattag cgagcaagaa
     5281 cgccatttct tgcataatcg tgcagcagat atgggcttat ttatcaccgc agcaaccggg
     5341 gtaatgcgta acggcaaagc gttttacggt cagccggaag ctcttgatga acgctatttg
     5401 gcaagcctga cagaaactgc caatatcttg aaaaatcaag gcaccaaagc gattttgcaa
     5461 attttccacg gtggggcaca agctattcct gccttgcttg acggggcgaa tgcagttgcg
     5521 ccgtccgagc acgccaacgg tgctaaagcc ctaacggcgg acgaagtgaa gcaaatgatc
     5581 caagctttcg ctaatgccac cgatttagct attcaagccg gttttgatgg tgtggaaatt
     5641 cacggggcga acggctattt aattcaacaa tttttctcta ctgaatttaa tcaacgcact
     5701 gatgaatggg gcggtagcct tgaaaaacgc ttgcgtttcc cgttagcggt ggttgaggca
     5761 gcggtcagcg tgcgtgaaaa acaccaacgc cctgatttta ttatcggcta ccgtttctca
     5821 ccggaagagc cgggcgaaca cggcttaacc atgaccgata cctacgccct gattgatgct
     5881 ttgtgcgaaa agccgttgca atacttgcac atttcactct gggatttcgg caaaaaagcc
     5941 cgccgtggtg cagataccaa cttcacccgt atgcaactgg tacaccaaca catcaacggg
     6001 cgtttaccgc tgatcggcgt gggtaactta ttaaccggtg aacagatccg taaagcttat
     6061 gcaacaggct gggcagaatt tatcgcctta ggtaaagcgg taatgctcaa cccgaacgtg
     6121 gcgaccttgt tgaaagataa tcgagacagt gagattgtca gcgaactcga cccgcaacaa
     6181 gccgaccact acggcattcc cgatagacta tggggctact gcgtgcaagg tggtgcttgg
     6241 ttaccgccgc ttaaagggca aaacgggcaa ccaatggata tttaatcatt acagacaagc
     6301 ggtcattttt ttgtaaaaat ttgcaattaa gtgaccgcat tttttcaatt atctgaagga
     6361 gaaaaattat gattacgtta cattacctga acagttcctg ctctcaccgc atcgtttggt
     6421 tgttggaagc cttaggcttg gattacgagc taaaaatcta ccatcgtgaa gagagcggtt
     6481 ttgcacctat ggaggtaaaa gccttgcacc cacttggcaa agcccctgtg ttgcaagatg
     6541 gcgatttggt gcttgccgaa ggcaatgcga ttatccagca tctgattgcc cgttacgccg
     6601 aagggaaatt tgagccgact cgtggtagcg aagcctattc aatgtatcac tactggttgt
     6661 cgatttctgc ttcattattc tcggcaaacc ttgtgacaat gttggctaat cgctctgatc
     6721 tcggagcttt tggcgactac gcaaaagcgc agactccgct gtattttaac catattgagc
     6781 aaacactttc agataaaaaa tggattgtgg gtgatgaact aaccggtgcg gatttttctc
     6841 tctgtttccc actacaatgg gggcgtaatt ttgttgaaat ggcaaattac ccgaatattg
     6901 cacgctattt agaacaggtg gaaaatcacc ctgcttacca aaaagcgaat caaaaagccc
     6961 t
//
LOCUS       DANMGB010000131         6953 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.131, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000131 DANMGB010000000
VERSION     DANMGB010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.131"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..523)
                     /gene="hemG"
                     /locus_tag="PXG19_001957"
     CDS             complement(<1..523)
                     /gene="hemG"
                     /locus_tag="PXG19_001957"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL6067228.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQ"
     gene            complement(524..2008)
                     /locus_tag="PXG19_001958"
     CDS             complement(524..2008)
                     /locus_tag="PXG19_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL6067229.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            complement(2012..2623)
                     /locus_tag="PXG19_001959"
     CDS             complement(2012..2623)
                     /locus_tag="PXG19_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL6067230.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            2738..3691
                     /gene="fmt"
                     /locus_tag="PXG19_001960"
     CDS             2738..3691
                     /gene="fmt"
                     /locus_tag="PXG19_001960"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL6067231.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            3809..5182
                     /gene="modF"
                     /locus_tag="PXG19_001961"
     CDS             3809..5182
                     /gene="modF"
                     /locus_tag="PXG19_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL6067232.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            5183..5773
                     /locus_tag="PXG19_001962"
     CDS             5183..5773
                     /locus_tag="PXG19_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL6067233.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            5862..6902
                     /locus_tag="PXG19_001963"
     CDS             5862..6902
                     /locus_tag="PXG19_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6067234.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
BASE COUNT         2040 a         1578 c         1435 g         1900 t
ORIGIN      
        1 actgattggc taataatttg ccaaaattct ccacctgctg ccaatcggtg tactcatatt
       61 ctttggaggt atcggtttcg cctttggtaa ttttcataat aaagcgaatc atcaatcggt
      121 cgaatggctt atagcgtagg taaagtaatg ccccagcaat tacctcaatg tgggttggtt
      181 tccatttcac tttagctaaa aatttacgca cataagtatt ggtttcaggc gtgtttcgat
      241 tatctttgcg agcggtcaaa ttcacaccgt aaaaggcagt tttcttggcg tttaatgccg
      301 gataatgctg ttccacaaac tgataaacca acgggttaaa atgcccatag cgaattgaag
      361 caccgatgac aatttggtcg gcatttgcaa ttttttcggc aaaatcgacc gcttgatctt
      421 ttagcgaaat cagctcgact tcgtgagtaa tcacgtccgc caatcgttcg gcaatttttt
      481 tggtttgacc atcggtcgta aaatagagaa ttaaggtttt catttaatct ttccaaaaaa
      541 cagggcttaa aatcaccagc aaggtaaaca cttccagacg tccgcatacc attgcaaaag
      601 tcagcactaa cttggcactg tccggcactt gggtgaaatt gctgctcacg ctccctaatg
      661 caggacctag attatttagt gaggcaatta ccgcatttag agcatcaaag gtttccattc
      721 cacaagcgat ggtagcaagc cagcagatca cgaacacgaa aaagtacgcc gagaaaaacg
      781 cccaaatacc atcaaccacc cgttccgata aaacgtggtt gcctaattta atcggttgaa
      841 tcacattggg gtgaatgtag cggtggattt cacgtttact ttgtaaataa agcagcaaca
      901 cccgaatcac tttcaagccg ccaccggttg agccggcaca accaccgata aatgaagaca
      961 gcaccaacag cgtgggtaaa aacgaactcc attggctaaa atcattggta gtaaagccgg
     1021 ccgtggtgga aatggacacc gattgaaaca acgcttgctc aatcgtaaca gaggtattat
     1081 cgaaataacc gtaacccact aacaccaagg tacaaaccaa gaaaagccct aactgcacca
     1141 tcaagaaaaa acgaaactcg taatcgcccc aatacaagcg gcttaaaata cccccttttt
     1201 tgcgtgattg tgcatctcgt atgcgatcaa tcaccgcaaa atgcaatgca aagttgcagg
     1261 cagaaagtag caggaaaaac acggtaatat agctaattgc cgcattatta aaatagccga
     1321 tgctggcatc gtgggtagaa aatccgccaa tcgaaaccgt ggaaaagcta tgcgaaatgg
     1381 catcaaacac cgtcattccg gcgagccaaa atgcgaccgc acacagaatc gtcaggctga
     1441 gataaatcag ccacaacgct tttgccgttt ccgcaatgcg aggtcgcatt ttctgctctt
     1501 tgagcggtcc gggcatttcc gcacgataaa gttgcattcc accaatgcct aacagcggaa
     1561 taatcgcaac cgctaacaca atgatcccca ttccccctag ccattgcaaa aattggcggt
     1621 agaataaaat cgctttgggc aagctatcta agccggtgat gacggttgca cccgttgtag
     1681 ttaagccgga aaaggattca aaaatggatt ccgccacgtt taaatcgggg ttttccaaaa
     1741 taataaaagg cacagccccg agcaaaccca gcaccaccca aaacagtact acaatcaaaa
     1801 agccctcacg ggaacgtagc tcgtttttgt tgtcacggca cagccaccaa agcagcgtac
     1861 cgaccataaa attcagagcg aaggcttcta aaaacgcccg cccaccgcca tcgccataaa
     1921 ttagggcgac cgttgccggc acaagcattg tgaatgaaaa acacatcacc aaaatgccaa
     1981 caatacgaat aatggaaaaa aattgcatag actagatttc ttcttttatt aatgcgagct
     2041 tgcccgaaaa gcgttgggtt aattcatctg caaaggcctc aacctcgctc gggttaaatg
     2101 ccagcaacaa atccacttta tcgctaaaaa gttgctcgac aatcacaata tctttctcgc
     2161 taatgagatg agaaatggta ttaaactgct catattcaca ttgcaagcgg tagttttttc
     2221 gcaaaacttt gcgaatccgc tccaactgca ataacgcctg ttgcacccca ttgccatagg
     2281 ctttcaccaa gccgccggtg ccaagctgga taccaccgta gtagcgaacc accaccgctg
     2341 taatttcccc caagcctgac ccaagcaaat aattgagcat tggcttacct gctgtaccag
     2401 acggttctcc atcatccgaa aagccgtatt gttgcgaatc attcggcaag cctgccaccg
     2461 ttgcccaaca ccaatggcgt gcgtgcggat gctgaatttt cagctcctgc caaaatgcct
     2521 tggcctgctc cataccctca gtatggcgaa ggtaggtgat aaatcggctt tttttaatct
     2581 cttcttcaaa aattgtatcc gctttgggga taaaaaattc cattgtttga ttctcttatc
     2641 ttgaatgtgg caatgatacc atattcaagc cactttttat ttgtgctgtt taatggttta
     2701 ataagtcttt cattgataac ttgaacgaat aaaaaatatg tcaaaactca atattatttt
     2761 tgccggcacg cctgattttg ccgctcaaca tttacaagcc ttattagatt ccgagcataa
     2821 cgtgattgcg gtttatactc agccggataa acctgccggg cgaggcaaaa aactgcaagc
     2881 cagcccggta aaacagctgg ccgaagctca caacattcct gtttaccaac ccaaatccct
     2941 gcgtaaggaa gaggctcaag ctgaactgaa agccctaaat gccgatgtga tggtggtggt
     3001 agcttacggc ttaattctac ctgaagcagt attgaatgct cctaaatatg gttgcctaaa
     3061 cgtacacggt tcgctactac ctcgctggcg tggagcagct ccgattcagc gttcgatttg
     3121 ggcaggtgat acagaaaccg gcgtaaccat tatgctaatg gacgttggct tagacaccgg
     3181 tgatatgtta cataaagtca caaccccgat tgagccgaat gaaacctccg cctccttgta
     3241 tgccaaactg gcagaacttg cccctctggc attgcttgag gtgttaaacg gtttagccaa
     3301 ccacacattc aaagcggaaa aacaagatga agcactgtcc aattacgccg agaaactttc
     3361 caaagaagaa gctaaattgg attggcaact cccagcagtt caactggaac gcaatatccg
     3421 agcttttaac ccttggccgt ttagtttttt aaccttaacc gttgatggcg ttgagcaaag
     3481 tatcaaaatt caccaagcca cggtgttacc tcaccaagaa aaagcagccg gcacggtaat
     3541 taatgtggat aaaaccggga ttcaaattgc cacccaacag ggcgtgctga atattaccca
     3601 acttcaaccg gcgggtaaaa aaccaatgtc ggtgcaagat ttcttaaacg gtcgagcgga
     3661 ttggttcgtc agcgggacac aactaagtta aaacgggaaa tatatgcaaa cacagccttc
     3721 acttacaata accaatgccc gattttcact ggttaaacaa cataaactca cgattgacgc
     3781 cttacagatc caacccaatg acttttaggt ggtcgtagac ggaaacggtt caggcaaaac
     3841 aactttttca ctcgctttac agggtaaaat ctcgctctat tccggcgact atggtaattc
     3901 gttccaacat attcagctcc tctctttcga gcaacaacaa aaaatgttgg agcagatttt
     3961 caaagatcgg aacaacgata gtgtctcgcc cgatgatttc ggcttaaccg cacgacaagt
     4021 aattttaaat ggcagtccaa aagaggcgtt atgtgaggaa tatgcccaca aattgcatat
     4081 tcaacatctg cttgaacgcc cgtttatgca cctttccacc ggtgaaagcc gcaaagtgct
     4141 attttgccaa atgttagtga gcgagccgga tttattcatt ttagacgaac cgtttgaagg
     4201 gctggatcag cagtcggtgc aatattggca acaactgatt gccgaactac aaagcaaaat
     4261 ggcgttagtg ctgattgtaa atcgttttaa cgatattcct gatgctgcca atcatattga
     4321 gttattagat aatttatcat taattctgca aggagagcga gcagaaattg aacaacaagc
     4381 ggtctattct cagctaaaat ttgcagaaga gaatgtcaat gtgccactgc ctgatagtgc
     4441 agctccgcta ctcagcctgc cggaaaacat caatccgttt gagttggaaa atgtgaatat
     4501 tcaatatggg gagaagaaga ttttagataa cctaagttgg acggttcagc ctaaacaaca
     4561 ctggtggatt aaaggcccga atggagctgg gaaatcgacc ttgctttcga ttatcaccgg
     4621 cgatcaccca caatcttatg ccaataaagt ccgactattt ggcaaacaac ggggaagtgg
     4681 cgaaaccatt tgggatatta agaaaaatat cggctatgtc agcagccagt tgcatatgga
     4741 ttatcgggta aattgctccg caatggaggt cattctttct ggcttttttg acagcatcgg
     4801 cgtgtatcaa caagtgccga atgccttgca attaaaagca atggaatggt tggaacgcct
     4861 caatttaagc aatgttgcca aaaagccgtt tcgctctctc tcgtgggggc aacaacgctt
     4921 acttttgatt acccgagcaa tggtgaaaca cccatcaatt ctgattctag acgaaccgtt
     4981 acaaggttta gacggcatta accgcaaatt agtcaaacag ttcattgaac aattagtgac
     5041 taacagccaa acgcaactac tttttgtttc gcaccaagac agcgatgctc caaattgcat
     5101 tacgcattta tttgagtttg taccgaaagg cgaaaccaac gagtttgggt ttgagtatca
     5161 ccaaactgca cttggagcat aaatgaattt tcttacccat tcgctgattt cacttgaaat
     5221 tgacacccaa accaagcaac agaccctata tggcaacttt gccggtgatt tctataaagg
     5281 tttaattccg catctcaatt tagcggataa cttaaaaagc ggtgtggtgt tacaccgctc
     5341 gattgataag atttcggacc gaccggacag cctcacaacc caattactcc aaggcacatt
     5401 cgggcgttat aaaggcattg tgtcggatat tatgatcgac cattttctcg ctaaacattt
     5461 ccaacggtta tttgctaaag atttaaatga ggtacaagca cagatctttc agcaaatcga
     5521 acaacaacgc acgatttttc ctgaacaatt tgtgccgatg tttaactggt tacagtcacg
     5581 aaaagcatta actcattatg ccgatttaga tttcttagaa caggtattct tgggaatgtc
     5641 atcaagagtt aagaaaggtg agattttaag aaatgctgta accgaaattt ggcagaatta
     5701 tactctttta gaagaagccg ctattcagga gttttttact gtaaaagaca gggctactcg
     5761 agaacttagt tgaatacttt agtcggtatc ttggatattc ttgaatttat cgatcttttc
     5821 tcttatcctg tctgataata attctcaaac attacatttt tatgcaaaca acgctctctc
     5881 cccaacaaat agctaaaaag caccgaacta ttgaaaagaa acgcagtttt ttattactct
     5941 ttttcttact catttgttta ctcagcctca ttttcgatat tatgacaggc ccttccctgc
     6001 ttccgtttaa tgaagtttgg aaagccttat tccaattagg cgaaattgaa gaaaccacca
     6061 aagtgattgt ctatgagcta cgcttaccaa tggcaataat ggcattggtg gttggagcag
     6121 cacttggtgt tggcggagct gaaattcaaa ctttgcttaa taatccaatg gcaagccctt
     6181 atacattggg tttagcagct gcagccggct ttggtgcttc gattgtgatt gcctttggtg
     6241 gatttggttt acccaccgaa atttctgtac ctgtcggggc ttttgtgatg acactatttt
     6301 cttccgccat tttatttgcc ttttcctctt taggacgttt tagctcggca atattagtgc
     6361 tggtaggaat tgccttattg tttttatttc agtctttact gtcattggtg caatttattt
     6421 ctgcacctga ggtatcccaa caaattctgt tttggctatt cggtaattta actaaagcta
     6481 cttggcagac tatctcaatt gcctttggcg taactacagt ctgtatttta ttattattca
     6541 aagatgcgtg gaaattaact gccttgcgtt tgggcgaagc tcgagcattg agcttaggca
     6601 ttaacttaac ttggttacga atgaaaacat tgctgattgt gtctgtaatg acggccacct
     6661 gcattagctt tgtaggcatt atcggcttta ttggcttagt tgccccgcat attgcccgaa
     6721 tgttgctagg cgaagaccaa cgctttttcc tgcccggttc aatgttagtg ggtgcggcat
     6781 ttttatcgat gtcatccgtg ctatcaaaaa gccttgtgcc gggcgcatta tttccggtcg
     6841 gtattattac ggcattagtc ggtgtgcagt tctttttctg gattgtattg gcgaaacgat
     6901 aaggattttc tatgctcaac ttaaacgatg taactattaa gcgtggaaac tta
//
LOCUS       DANMGB010000132         6908 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.132, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000132 DANMGB010000000
VERSION     DANMGB010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6908
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.132"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(180..2528)
                     /locus_tag="PXG19_001964"
     CDS             complement(180..2528)
                     /locus_tag="PXG19_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6067235.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2713..4170
                     /locus_tag="PXG19_001965"
     CDS             2713..4170
                     /locus_tag="PXG19_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067236.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRDDVKENGDSYAEYGVFT
                     QSGKEAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNES
                     KLNGKIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQL
                     EEAVGVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            4234..5646
                     /locus_tag="PXG19_001966"
     CDS             4234..5646
                     /locus_tag="PXG19_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6067237.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(5896..6219)
                     /locus_tag="PXG19_001967"
     CDS             complement(5896..6219)
                     /locus_tag="PXG19_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL6067238.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(6188..6715)
                     /locus_tag="PXG19_001968"
     CDS             complement(6188..6715)
                     /locus_tag="PXG19_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL6067239.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
     gene            complement(6717..>6908)
                     /locus_tag="PXG19_001969"
     CDS             complement(6717..>6908)
                     /locus_tag="PXG19_001969"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067240.1"
                     /translation="RLSLAAKELNWSQKQFNDYVNARPENFRLENISENRSHKNEMPG
                     KDNIKSIIDDMKKFQQIGK"
BASE COUNT         2079 a         1529 c         1302 g         1998 t
ORIGIN      
        1 attgtcttat ttaacaacaa acaggaaatt ttggtaagct ccgaaaataa caagaaagga
       61 aaaacagcac tattttatcc aaattaccaa tacctgagtt ttaaacaagc ggttattttt
      121 agccgttttt ttgcaaaatt tgaagaaaaa ataaccgctt gtcttgttat gtcgagaact
      181 taaaatttca tctccattcc caacataaaa tttcgtccca tttgtggtac aaattggtga
      241 tacgaagtgt ggatatacac cggctgattc agtaagtttg tgccgtttag actgattttg
      301 taatccagct ctttccactt attgctatac gacaacccga cattcaacat cgtattacct
      361 tcggtaatat attccaactg gctcgtacgg cgttgggtaa aggtgcggat cagctctaaa
      421 tcccccgacc aatttggggt aaattccgca ttaaagcgaa aacctaaacg cattggcggt
      481 gtacgagggg tgttttggtc agcccgatat agaagataat ctttcccttt ttccacattt
      541 tccggcagat aatctttgaa cacactataa tcgctattta tcttcaatgg tggtaaattt
      601 gttagccagc ctcgtaccat atcgccgaaa atcgtggctt ggtattggtc gttaaagcgg
      661 tagcttgcct ctgcttctac cccgtaaaaa cgggcttttg cctgattata acggcgcata
      721 aatagctgat tttcacggaa aagattttca ttgtagatgt agtttttaaa gtgattgtaa
      781 taaacactca ctttatagcc aatacgttca gcttgatagc ccaagcccaa ctccacatta
      841 tttgactgct cttttttcaa gtctttattg ccgtattcaa acgaattagt agcaatatgc
      901 tgcccgtgat aatacagctc cattggcgtt ggcaagcgtt cattgtgcga ggcagtaaac
      961 gaaagctgat agtcagggtg gaagaaccag ttaagcgtgc cggaataggc ataagccgtt
     1021 tcatcatagg gtgaaagatc tggctcaacc tgtttgccgc cactgatacg gtagtgttct
     1081 tgtaaccgtt tgatttcatt gcgatcatac tcaatctcaa tcttctgctt ttccattcgt
     1141 ccggcaagct caacagcaac gctatcccac atatactgct caaccccaaa caggctgaac
     1201 tgtttattgg tattttcaac cagcgggaat ttcacttcgc gatctttcgg cgcattcata
     1261 ctgctttttt gcgtttgata ctgaacaccc catacaccgg ttaagccacc tagcggtgcg
     1321 tgatagacct ccaagcgggt atttttgccc cgatttttga aaatattcac cggcttgccg
     1381 taatcctgat cttttttcag ctgtttatgg taacgggtgg caagcacgcc tgcatctttt
     1441 tcatcgtggt aataatcggc atcagcatag cttgccttaa ttttatctac gcccttaaac
     1501 ggctggcgta gctcggcttt cacatcaatc cgttttgatt ctaaatccac ccacgggcct
     1561 ttgtgagtgt gatcgtgggc gtgtccgaac gggttatcgt ggctgtgtgt gccgtcctcg
     1621 gcgtggttgg ttccacagtg gaagtgcgga ttgctcccaa tattttcctc accaatcaaa
     1681 tgcggataga gataggtata agcgtattta tcccgcttat taccgtagat atgaccggta
     1741 cagaaatcaa atttatggtt atgccccggc aagccataat tatcccgccg tttgctgtat
     1801 gaggcaccaa tatagcctcg ttcaccgaca aaggataagc ccaacgtgcc gactttggat
     1861 ttattgtaag tgtccggcac atagtttaag cgctcgccta agttgatccc cggcacacgg
     1921 tagttatcac tatgacgact cagcccttcg actcgcaccg caatgtggtt accgatgcca
     1981 aaggttgccc ctaatgcgcc gactttctct ttggcggcgg tatcaaaacg gctattgagt
     2041 tcaacctcat atcccttttc aggaatagcg gtcggaatac gtttatccac cacatttaca
     2101 attcctaccg gcgaactgct ggcataaagc aaggtgctgg aaccacgcaa gatttcgacc
     2161 tgatcggcaa gcagtgaatc agcaacaacg gcgtgatcag gagataggtt cgacatatca
     2221 atcacgtctg aaccgttttg caaaatgcga attctcgccc cttcctgccc acgaataatc
     2281 ggcttactcg ctccgccacc aaacgggtta ctatgcacgc ctaattctga cgccaacgca
     2341 ttacccagcg ttgccgaacg ctttttaaat tccttacctg caataatttt atcactgact
     2401 tttagcaagg taacttcact cccctgcgat atacttggag tgctgccaac gaccgaaact
     2461 tcatctaaca ccgctacatc gttattttcc gcccaaacaa gcgggctaaa ttgagccgaa
     2521 atcagcaatg ccaatcctgt tttcttaaac acaatctttc tccttaaaaa aattaaggat
     2581 aataaggtac tgcaaaatat gagtctttac aataataacc ataaaaaaat tatatttttt
     2641 aaattttccc tattgccaaa caggaaatat atccattaaa attttatgga tttaatctga
     2701 cggagacaaa atatgcgttc tacattcaaa cttactcttg cagctttagc tgtttctatt
     2761 gttttaagtg gctgtaaatc tagccaaggt ccatctattg ttgcagacag ccctccacct
     2821 aaggaaataa cagctactga tggcaacgat aaagagaaaa ccgataacaa agagaaaaag
     2881 tctgcgcaac caaataaatc cgatcctcaa ccggataaac ctgctaacgc aaaagaccca
     2941 gtaaaacctg atgcggagac aaataaacca agtaaaaaag ataaagaata tacaccacct
     3001 gctactgaaa aaatcgataa ctcatcagta cagccggata aaatggtgcc taatcctatc
     3061 gagaataagg aaaacgacag taataaacct aaccccaaag aaagcgatag cgataataat
     3121 gacaaagtca ctgaaggcaa taaaccaaat gccccaacag aaacagtaaa taaagataaa
     3181 gaagctgaga aaagtaaaaa ggagaataaa gaggactcaa gcaataatac tcctaacatt
     3241 aattttgacg gggcaaagcc tatagataca gatagtaaag gtagcccgta ccgagtaata
     3301 aacctaaatc cgagaaaaag cgtagtaaat gcaagtgcta tgcaaaaagt agatttcgac
     3361 tcttttacgg atgaatctgt tgaaaattca ccatttgtca gtagcgatac tgaaaaagaa
     3421 tacaataata cacttgtttt tgggcttggt gccggagata aagattctta ttttaagaac
     3481 ttaaatcaaa aaggggataa acatttaggt attcatagtg gcgtgtatga agatgcgaat
     3541 ttagaaggta atactaaaaa aattaactat ctctatgtaa atcaacctta ttcgagctat
     3601 ggtgctttat ttacggacca aaaagacagc catttattca acgttcgtct gaccgctggt
     3661 agagatgatg taaaagaaaa tggagatagt tatgccgaat atggtgtatt cacacaatca
     3721 ggaaaagaag ctaaatggaa tgataacctg attggtgatg ccacttacaa aggtcaagct
     3781 attgctcgcg ttattcgtca ggtaaatggg gaacaagtcg caggtattcc tcaatttgat
     3841 ggtgatgtta cattaaattt acacctttcc aaagaatgga atgaaagtaa actaaacggc
     3901 aaaattgata gccaaagtgt tggggtaatt acacttaaag aaagtgaaat agctaaccct
     3961 accgcactcc gctcaaatat tggttttgga gaagaagtca tagttgagaa taaagagaat
     4021 cttgtgggtg attacgctgt cgattttacc gggcctcagc ttgaagaggc ggtaggcgtt
     4081 gttgaattag aaaacgaagc cgagacattc tctgaaaatg aagtcattaa atacaatgcg
     4141 gtatttggcg taagcaaagc ggcgaaatag tattttttgt atcttacaaa gggctgttaa
     4201 gcccttttat ttttattatt ttaaggataa aaaatgaaaa aaattgcctt actggcactt
     4261 ttcccaatga tgttatttgc ccgagatcct aatactacac aggcttatat tgagcatact
     4321 gcacagccaa ctacaacccc ccaaagggtc aagatcgaaa aatcagtgcc tatttttaac
     4381 gaaactgaat tacgtgctaa tcaattattg accgaaaagc tacttatcca agctatttat
     4441 agtcgtaggc ttgctaacat ggaaaaatta actgcgattt atcgggattt tacccacatt
     4501 gacccggttt tactgcgtta tgcacaaggt aaaattgccc tactgaaagg cgattacgca
     4561 caggcaattc agcacttcca aaccattctt gccaaacaac ccaaactaaa cactgtaaga
     4621 attgagctgg cgattgctct attgtacgat cagcaactta atcaagccca agcacaattt
     4681 gaaaaagcca aaagtgccga acatctaccg cctaaagttc acgcattaat tgagcaatat
     4741 cagcaacatc tggcaaaaaa acaggaatgg aaatttagtt tttcagccaa ttatgtgcga
     4801 gacggcaaca ttaaccgaac ctcgaaacag ccgaacattg agcaaaccgg ctatgtaaaa
     4861 caacctaatt tgttgcccca aaccgcacat ggtgttcact atgcgtttgg attacagaga
     4921 gatttcaacc tgttcgactc acactatgtg agttttgaca accaaaccca aggtgaactt
     4981 tattgggata accacgatta tgatgaaatt accaatcgca ccttgtttgg atacgcttac
     5041 aaaaaatccg accaaaccac ccgcttgtta ccgttttatg aaaaacgctg gaaacatcac
     5101 cgttcggaac gctggacaaa cggaattcga cttgaacacg cacaatggtt ttcaccgcat
     5161 tggcaactcg ccaccgcatt ggaatacggc aaaaaacgtt attttgattt gccgatttat
     5221 aacggcagct acaaacttgc ctctgccaca ttgctttggt tacgcaatcc acaacaattt
     5281 ttctttgtcg gcactgattt caatcaagac aaaactcagt taaaacaata tagctctgat
     5341 actaaaggca tacgctttgg ctggcaacga gaatggcaag ccctcgagct ttccagtcgc
     5401 ctcacgcttg gctatactga cagacgttac aaagacaccg ctatattggg aggaaaactt
     5461 aatcttggca gaatccgcca tgaccgtgtg caaagtgcta acctcacgct ttggaaacga
     5521 gattggcact ggctcggcct gatgccgaag ctgcaattta gttacgccaa acaccgtagc
     5581 aacctgccga gcctctatgc ctacaccgat aaaaacatca atttaattat tgaaagtcgg
     5641 ttctagctcc ataaaaacaa caagcggtta aaattcctag aaattttgca aattgcaaaa
     5701 aatgtagaaa atttaaccgc ttgtatctat actgcagctt cttttccttc agtataaatt
     5761 aatatacacc gttgcaacaa taatggctgc tccctgtcat caccttgaac tgaaaattgc
     5821 tcaaggtgga tatgactatc gcagccgctt ccaccgcacc cagtaatgta tgggcaagca
     5881 ggttggcttg ggtatctact ttttaatttg ttcgttgaga tatggcgaag ctaagcctac
     5941 tgctgcttgt cctgaatctt tcgccgctaa accttgtaag gctgccgtca ccgcatccac
     6001 cgcacgcttg gttttgctgc ccgtgccgta ggcgttatca aaagtctgct gtttatcgtt
     6061 taaatcccgt tttaattgga gatattcagg atgttgagcg atttcttctt ttgtttttcc
     6121 ctcatttctc aaacgggttt ccactttgcc caattccagc ttcgcttccg tcactttttc
     6181 acgctcacta tgcgtgtaaa tctgataagc cttctgcaat ctcgcctatg cccttcacca
     6241 gctcctgtgt ttctttcacc tcactaatat cgtgttctat taactctatc tctttaggaa
     6301 ctgctccaat catagacaat ggaataactt gatctttatt ttcaatattc ggatctgccc
     6361 ccgcatttaa taatgctatc gctgcatcaa cattctttgc cctcattgca taatgtaaag
     6421 gggtcattcc gtagcaatct tgggcattaa catctacccc atgtttaatg taaaattcga
     6481 ctacagaaag aggagatggt gaataactat ttaagttaca catatgtagc cagttccatt
     6541 tttcttttgg tgtgctatcc gtaatagtca gttcaccttt tacgaaaaat gtttcttgta
     6601 aaagatcgag atcgccttct gagtttgctg caataactct taattcagga tcttgatcat
     6661 ataattcttg ataacgttct aatgtctgct gacgttcttt attcttatct ctcattttac
     6721 tttcctattt gttggaattt tttcatgtca tcgattattg atttaatatt atctttcccc
     6781 ggcatctcat tcttatgact ccgattttca gatatatttt ctaatctgaa attctccggt
     6841 ctcgcattaa cataatcatt aaattgtttt tgactccaat ttaattcttt tgccgctaat
     6901 gataatcg
//
LOCUS       DANMGB010000133         6821 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.133, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000133 DANMGB010000000
VERSION     DANMGB010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6821
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.133"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            18..1481
                     /gene="ubiD"
                     /locus_tag="PXG19_001970"
     CDS             18..1481
                     /gene="ubiD"
                     /locus_tag="PXG19_001970"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL6067241.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            complement(1566..2390)
                     /locus_tag="PXG19_001971"
     CDS             complement(1566..2390)
                     /locus_tag="PXG19_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067242.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            2517..3362
                     /locus_tag="PXG19_001972"
     CDS             2517..3362
                     /locus_tag="PXG19_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL6067243.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            3819..6761
                     /gene="rne"
                     /locus_tag="PXG19_001973"
     CDS             3819..6761
                     /gene="rne"
                     /locus_tag="PXG19_001973"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL6067244.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
BASE COUNT         2146 a         1478 c         1490 g         1707 t
ORIGIN      
        1 cgaaaaatat gaccgctatg aagtataaaa atctccgtga atttctcgat ttccttgagt
       61 ctcagggtga attagtccgt attcagcaag aaatcgatcc ttatttagaa atgacagaaa
      121 tcgccgaccg caccttacgc aaaggcgggc cggcattact gtttgaaaac ccgaaaggct
      181 atcaaatgtc ggtgttgtgt aatttattcg gcacgcccaa acgggtagct ctgggaatgg
      241 ggcaagaaga taccaaagct ctgcgtgagc tgggcaagtt acttgccttt ttaaaagagc
      301 ctgaaccacc gaaagggttt aaagatttga tcgggcaact gccacaatgg aagcaaattt
      361 taaatatgcc gcctaaggta ctgagcaaag ccgattgtca gcaagtggtg atttcgggtg
      421 atgaggttga tctctacaaa ttaccgatta tgcactgttg gccgggcgat gtcgctccac
      481 tggtcacttg ggggctgacg attacgcaag ggccttacaa aaaacgccag aatttaggca
      541 tttatcgtca gcaacttatc ggcaaaaaca aactgattat gcgttggctt tcccaccgtg
      601 gcggtgcgtt agacttccaa gagtggaaag ccgaaaaccc gggtaaaccg tttctggtgt
      661 cggttgcgat tggtgcagat ccagccacta ttttagcggc agtcacccct gtgccggata
      721 cgctttcgga atatgcgttc gcagggctgt tgcgagggca taaaaccgaa gtggtcaaat
      781 ctatttccaa tgagttagaa gtgccggcaa gtagcgaaat tgtgctggag ggctatatcg
      841 atctggaaga aaccgcattg gaaggccctt atggcgacca caccggctac tacaacgagc
      901 aagagtattt tccggtattt accgttaccc atattacgat gcgaaaagat gcgatttatc
      961 attctaccta cactggcaga ccacctgatg aaccggcagt attaggtgaa gcattgaatg
     1021 aagtctttat tccgattttg caaaaacagt ttccggaaat tgtcgatttc tacttgccac
     1081 ctgaaggctg ttcttaccgt ttagcggtag tgacgatgaa aaaacaatat gccggacacg
     1141 ctaaacgggt gatgatggga gtttggtcgt tcctgcgtca atttatgtac accaagtttg
     1201 tgattgtgtg cgatgacgat gtgaacgctc gagattggaa agatgtaatt tgggcgatca
     1261 ccacccgttg tgacccggct cgagatacga cactgattga acacacgccg atagattatc
     1321 tcgattttgc ctcgccaatt gcagggttag gctcaaaaat ggggattgat gccaccaata
     1381 aatgggcggg tgaaaccacc cgagaatggg gaacacccat cgaaaaagat gacaatgtgg
     1441 tgaaacgcat tgatgagatt tgggattctc ttggcattta aggcaacatt taaccgcttg
     1501 tgcaacataa caagcggtta aattttttga catttttacc attcggctat ttgtttctca
     1561 tcaggttacg actctttatt ttgagccagc cactcggtag gcgaaagccc taattcccgc
     1621 ataaagacac ggctgagagc agcattatgg ctataaccga cttgctctgc caccaatgct
     1681 actggtatcc ctttttgtaa taaatgctgg gcaaccgcta gtcgccagtt agtgagataa
     1741 tccatcggtg aaacccccat cgtttgttta aaataagcag caaagcgtga gcgagacatt
     1801 aatgccacat ttgccaactc ctctacattc caatctcgct ctggtgcatt gtgaatagct
     1861 aacagcactt tccccagttg cttatctgcc aagcctttta acaaacctgt ttgaatatac
     1921 cctttttcca aacattggcg ggcaactttc aaggtaaaat aggcacataa atgatgaatc
     1981 attgcctgat aaccacaccc tttctgattc acttcactaa aaatttgatc ggctaatacc
     2041 cccaattccg gatactgtgc caactctaag atcacaatat tgtgcaaggt atgagttaat
     2101 gggttgcgaa tccctttgcc aaaatcaaaa ttaatacaaa atatatctaa cccactatca
     2161 tctaacgggt gcaaactatg caaaatattg gttggtgaaa aaataatcgc tgggcgttca
     2221 atcgtaatcg ggcgttcggc agcctgattt aaaataaaac gtccctgacg aacgaaatgt
     2281 aaatagcctt tattctcttc attaaaactc ccgatttggc ataactgacc tagatgaaat
     2341 aaatccgtgc gaaactgaaa ttgggtaaaa agatgagtca aactatccac attaagctcc
     2401 ttgggtaaag aattgagacg aacggttaaa acaggagaaa tgcgatcact ataatagcaa
     2461 cccgttcggt aacgcaagtt atcattacaa tttgtatatc tattaatgag gataaaatga
     2521 tgtcacagga acaatttgaa gaaatcaacc aagaacgccg tcaagccctt aaccacggct
     2581 ctcgtattgc aatggcagcc agtgtattag gtgcattagg tattgcatca acagcaaatg
     2641 caaaacaagc cagtgcagaa aaatcacctt atgccgagcc ggaacaatac ggtttaaaac
     2701 gccatggaat gaccattgat ccaaaacgtg tggcattagt ggtagttgat ccacaaattg
     2761 acttcctagg cccgaaaggc gtgatgtggg gcgtgttagg tgactcaatt aaagaaaaca
     2821 acactgtagc taacattgaa agcttattta aagcagcaaa agcagtcgat atgccaacct
     2881 ttgtttcgcc acactactat tacccgactg atcacaaatg ggaatttggt tcaccgggtg
     2941 aacactttat gcacgacagc ggaatgtttg cgagaaaagg tcaatacacc atggaaggct
     3001 ttgaaaattc aggtgcagac tttatgcctg agtacaaacc atacattttt gatggcaaaa
     3061 cagtgattac ctctccacac aaaatctttg gaccggaaac caatgactta gtgttgcaat
     3121 tacgcaaacg taaaatcgac caagtaattt tagccggtat ggctgccaac ttatgtattg
     3181 attcacactt gcgtgaatta atcgaacaag gttttgaagt aacagtggtg aaagatgcaa
     3241 ccgcagggcc tcgtattcct gaaggtgacg gctaccttgc agcattaacc aactaccgta
     3301 ttatcgcaaa tgacctctgg accactgaag aagcagtgaa aaaaatgacg gcaaaagcat
     3361 aatattcgct ttacaagcgg ttaaatttag ctcttttttt gcaaatttaa ccgcttggat
     3421 ttcacgctta tctccagcac tcacactaaa tctcattatt tttccttatc accccattca
     3481 ttttcattat attcatctcc acaacaaata acagctacca tacaacaatt accttgcctt
     3541 tttcagggtt aaaatgcgat aatgactcgt tatttttggc ttgaaaaagc aatagaaaat
     3601 tgcaaaaaat aaagcaaaaa taaccgcttg taatagagat aaacaagcct taagtgattg
     3661 attttgcagt ttctttaaga caagacaaag taaacgtaag acaaccatca atgcactatc
     3721 gggaatgaag acagtcgtga gatagacatt aaatccattc ccttattaat gggtcaaaat
     3781 gaccgtgtaa gacaaaaaca aaataatgag aaaacacaat gaaaagaatg ttaatcaatg
     3841 caactcaaaa agaagagttg cgtgttgccc tcgttgatgg gcaacgctta tttgacttgg
     3901 acattgaaag cccgggtcac gaacagaaaa aatccaatat ctacaagggt aaaattaccc
     3961 gtgtcgaacc aagccttgaa gctgcattcg tagattacgg tgcagaacgc cacggcttcc
     4021 tacctttaaa agaaatttcc cgagaatact tcccgtcaga ctatgtgttt aacggtcgcc
     4081 cgaatatcaa agatattatt caagaagggc aagaagtgat tgttcaagtc agcaaagaag
     4141 agcgtggtaa caaaggagca gccttaacca cctttatttc gcttgcgggc agttacttag
     4201 tcttaatgcc gaacaaccct cgtgccggtg gtatttcccg ccgtattgaa ggtgatgagc
     4261 gtttagaact caaagaggct ttagactgct tagatgtacc ggaagacgtg ggcttaatcg
     4321 ttcgtaccgc cggtgtcggc aaatcgccgg aagagttaca atgggactta aaagtcttgt
     4381 tacaccactg ggaagcgatt aaaaaagcgg cggaatctcg cccagctccg ttcttaattc
     4441 accaagaaag tgacgtgatt gtgcgtgcaa ttcgtgacta tctacgccgt gatattggcg
     4501 aaatcttaat cgacaacaaa aaagtgttcg agaaagccaa aaaccacatt cgccttgttc
     4561 gcccggattt catcaaccgt gtgaaattat acgaaggcga agtaccacta ttcagccact
     4621 atcaaattga atcgcaaatc gaatcggcat tccaacgtga agtgcgttta ccttccggtg
     4681 gctctatcgt tattgatgta acagaagcct taacagcaat tgatattaac tcctcacgtt
     4741 caacccgtgg cggcgatatt gaagaaaccg ctcttaacac caacttagaa gcggcagatg
     4801 aaattgcccg tcagttacgt ttgcgtgact taggtggttt gattgtgatc gactttatcg
     4861 atatgacacc ggttcgccac caacgtgaag tagaaaaccg tattcgtgag gcgacacgcc
     4921 aagaccgtgc gagaatccaa tttgcccgta tttcccgttt cggtttgtta gaaatgagcc
     4981 gtcagcgttt aagcccatca ttaagtgagg cttcatcgca tatctgccct cgctgtcagg
     5041 gaactggtaa agtacgtgat aatgaatcaa tcgcactgtc aatcttacgt ttattagaag
     5101 aagaggcaat caaagaaaac actgcacagg ttcacaccat tgtgccggtg caaatcgcca
     5161 gctacttact caacgaaaaa cgtaaagcga tttccagcat tgaaaaacgc cacgatgtac
     5221 aaattgttgt agtaccgtct gaaagtatgg aaacgccgca tttcagcgta tatcgcctgc
     5281 gtgaaaatga aattactcca acgttaagct acgatttaac caagcattac gaagctcgtc
     5341 atgaagaaga acacccacat catcaccatc aagaagatgt gctggttacc cgtaacgagc
     5401 cggtgattac ggtagagtca gtgttacaaa gctcggagct gaatctccaa ccttcgccaa
     5461 caccaaccga accaccaaaa ccatcgctgt taagccgctt aattgcgacc attaaaggct
     5521 ggtttagtga agaaaaagtg gaagaaaaac cgaagccgaa agcacgcaat cagcgtgagc
     5581 gtcgccaacg ccgtgaacgc ccgaaccgta atgctaaagc ggaaaatcaa gagcgtaaaa
     5641 ctccgcaagc tcaaactact ccagcggaag aaaaaccgat gcgtagcgag aaaaaagcac
     5701 gccgagcggt agtggaagaa gtttccggtg taaccgagca agagagtcgt agcaactccc
     5761 gtgaggttca aactgaacgt cgccaacgcc gtgatctacg taaaaaagtg cgtatcgaaa
     5821 cacaagaagt agaagtggaa aatctaacac ctgctgttga ggaaacggtg gcaaaacaag
     5881 ttgaaaatgt gcaaaaaaat caacaaattc aaccgcttgc aacccaagaa gtacctgttg
     5941 aaacagctcc tgaggtagaa acaacgaacg aaggacgtga aaataaccgc caacgccgtt
     6001 tacctcgcca tttgcgtgtg ggcaatcagc gtcgtcgtga aaatcaacgc aatcaggtta
     6061 tttctcctat gcctctaact tcagctgttg cttcgcctga gcttgcgagc ggtaaagttt
     6121 gggttcaggt tacctctact gtcaaagtag aggaaaaagc atcattctta tctgttgatc
     6181 aaatgcttga acagcaagaa aatcagcttg ttgagacaga gaaaaaatca gaagagaaga
     6241 agcttcatac agttagtccg ctaggtggct ttgtagcaca agcaactaac cgtgatttgg
     6301 ttaaggagaa gcaagaacag ctttccaaac cgaaagaaga aaaagttgct tctgaagacg
     6361 taaaaccagt agaggtaaaa gagcatattg ctccatttgg tagtgttgtt gctcagcatt
     6421 ctgaacgtga tttagttaaa gagaaaaatg agcgagtcag taaattccaa tcgcaagcaa
     6481 cggttgcacc agcgattgtg gaagaggtta ctaacccgat tgaagtgcca aaatcaactt
     6541 acgaaagcga ttatcgattt aacggcagat taggtacatt ctctcgtgtt gagcataccc
     6601 aagccgctat gaccattgct tctgcaccaa gtgacaagct tgaagtagtc gaaattagcc
     6661 aatggcaaaa ctctaaatac tatttctatg gcaaagggtt tggcggatat accagcgcag
     6721 tgagccaagt gcagtcagcg cctcgttcaa ccaatggtta agtacaatta attggtttaa
     6781 atgcctatta gttataacta ataggcattt ttttatcaaa g
//
LOCUS       DANMGB010000134         6633 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.134, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000134 DANMGB010000000
VERSION     DANMGB010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6633
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.134"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            266..1183
                     /locus_tag="PXG19_001974"
                     /pseudo
     CDS             266..1183
                     /locus_tag="PXG19_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(1185..1853)
                     /locus_tag="PXG19_001975"
     CDS             complement(1185..1853)
                     /locus_tag="PXG19_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL6067245.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(1897..3264)
                     /locus_tag="PXG19_001976"
     CDS             complement(1897..3264)
                     /locus_tag="PXG19_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL6067246.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(3383..3478)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(3649..4701)
                     /locus_tag="PXG19_001977"
     CDS             complement(3649..4701)
                     /locus_tag="PXG19_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6067247.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(4748..5173)
                     /gene="ruvX"
                     /locus_tag="PXG19_001978"
     CDS             complement(4748..5173)
                     /gene="ruvX"
                     /locus_tag="PXG19_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL6067248.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(5173..5733)
                     /locus_tag="PXG19_001979"
     CDS             complement(5173..5733)
                     /locus_tag="PXG19_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL6067249.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(5733..6464)
                     /gene="rsmE"
                     /locus_tag="PXG19_001980"
     CDS             complement(5733..6464)
                     /gene="rsmE"
                     /locus_tag="PXG19_001980"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL6067250.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
BASE COUNT         1940 a         1321 c         1359 g         2013 t
ORIGIN      
        1 ggtgttatat ggcggttggc tcttttgggt agtattagct ttttccttta tctattttat
       61 tcttcgaatg gttacttatt tagtttatcg tcaactgaat gaagagcaga ttattaaagg
      121 agcaaaagcc cattcgcatt ttatggaaac tttatatggt attacaacgt taaaatcatt
      181 aggattggaa aataaacgac aagaacagtg gatgtcgctc aatgcggatg cttttaacac
      241 atcaattaag gtaactaaat ttgatatgct gttttccggt attcatacct ttatttctac
      301 catcgaacag attttaattc tttggattgg ggcgacaatg atgattgaaa atgtgatgac
      361 attaggaatg tttgtcgctt ttaatgccta tcgaggctct ttctcttcac gaatggggaa
      421 tttaattgat attattttta gcctaaaaat tctttcatta catagagagc ggattgcaga
      481 cattgcttta aatgaagtcg aagatgaaag taaatatcaa gaactcagat ttgaacataa
      541 ccaaacagat atagaagtta aagacctttg tttcaaatac gatccttttt ctaaaaatgt
      601 gcttgaaaat gtcaatttag tgatcagaag tggggaaagt gttgctatta ccgcaccatc
      661 aggttatggc aaaacaacgt tattaaaatt aattgcaggt ttattaaaac caacctcagg
      721 ttctgtgtat tttaacggca ttgatattta tcagttagga ttaagtcaat atcggagcca
      781 aattgcttgc gtattacagg aagataaatt cttttctggt tccattttag agaatattgt
      841 tagttttgaa agtaattatg atcgagaatg ggctatcgaa tgtagcaaac ttgcgaatat
      901 tcacaatgat attatggcaa tgccgatgaa ttatgaaacc ttattaggag aattaggaaa
      961 taatttgtct ggcggacaaa gataacgatt gtttattgct cgagctttat ataaaaagcc
     1021 taaaattctt ttgatggatg aggcgactag ccatttagat gaagaaaatg agaagcttgt
     1081 caatcaagct atttcacgaa tgaagataac aaggattatt attgctcata gacaatcgac
     1141 tattcagtcg gcggatagaa ttattgccct gaatgacagg taaattaatt cctatttttc
     1201 tgttcttgcc gataaagttt attgcacgga atgctgtcgt tgttgccgtc tagctctttc
     1261 cagccgcatt gttgaaagta gcgttttgcc tgtgcgtaat tgccgatttg gttgcagctt
     1321 aatttaattt ggcaatcaat cgttggtggc tggtttgcaa tattttccgg ttttttgacc
     1381 gcttgtggta aggttgaggt gtgtgttttt cgccattggc tcgggttaat cgggaatttg
     1441 tcctgccata agccgatttt agcttgctgt gcttgatctt gtgcttcgat atattcccgc
     1501 tttgtggtgt aagcccacgc cataccgttt tccactaagg ctaagttgat gtttttatcg
     1561 tttaagtaga gggtggcaag taatcgttgg taacgatcat agcctgaaac tatggcagta
     1621 atgttttgtt gaaacacgaa ttgagccaga gcttgtttgg ctttgttgcc gtaaggctgc
     1681 gcttgttcgg gggcatcaat atgttgtagc cttattttta gtggtgtttt attgaccaaa
     1741 caagtgaggg tgtcgccatc gctaatgcca acgactttgc attgtagttg gcgttcggcg
     1801 gcatataccg atgagaaaaa taagctaaaa atcagggcgt aaagatattt cattattaaa
     1861 aaagagaggg ctaataagcc ctcattctat cattttttat tcggctttac ctgttttaag
     1921 gcgagcgaag aaatcttttg tttcactaat aatcactttg cgtaacgcaa tcaatgcgat
     1981 taaattcggg aatgccatta agccgttcac gatgtctgcc agcgtccaaa ttgtatcgag
     2041 ttgtaaaaat ggagcagagg cgatgagtgc aataaacagc aagcggtata atttaatgta
     2101 ttgggtgcga cctcgagtga gatagacaaa acagcgttca ccgtagtagc accagcctaa
     2161 aatggtggta aaggcaaaga agactaaacc aactgtcaca attatcgcac cgaatgagct
     2221 gtttaaacct tgagtaaaag cggttgtggt gagttctgcg ccttttacat cgcctgccca
     2281 agcccctgaa atcacaatta ctaagccggt cattgtgcag acgataatag tgtctaagaa
     2341 cgtgccggtc attgaaatta ggccttgacg taccggctct ttggtttggg cggcagcggc
     2401 ggcgatgggg gcagagccta atcctgattc attcgagaaa ataccacgtg caacccctaa
     2461 ttgaatcgct tgcatgacgg tgaatccgac tgctccgcct aatgccgctt gtgggttgaa
     2521 agctgcgtgt acaatagtaa taattgcttg tgggactttt tccatattca gtagaatgac
     2581 ggataaagcg gcgatgacat acccaatagc cataaacggt acaacaatgg ttgcaatttt
     2641 agaaatccgc tgcacgccac ctaaaataat agcggtaacg ataagggtta aaatgatcgc
     2701 actgaagata atcggcacat caaaggtgct ttctaaggcg tgggtaatgc cattcacttg
     2761 ggggaacgtg ccaataccaa gcaaagcgac caatacgcca aaaaacgcaa aggctttagc
     2821 aagccaacgc catttttttc ccattcccag ttcgatatag tacatcggac caccagccac
     2881 aaatccggct ctatctttag ttcgatattt aattgccaat aagccttcgg catatttcgt
     2941 agccataccg aataaggcaa tcagccacat ccaaaataat gctccaggcc cgcccgaatg
     3001 aatagcggtt gccacgccga caatattccc cgtgccgata gtagctgcta gggcagtgga
     3061 aagggctgca aaagcggaaa tatcgcccga ttgccctttg cctttttccg gtttgaacat
     3121 atagcgaaag gcttgcccta gttggcttaa ttgaatacct ttgagtgaaa aggttaaata
     3181 taaccctacg cctgaaatta aaatcaggag tggcgggccc caaacaaaac tgttgatttg
     3241 attaagaata gtgtcgatag acatttgatg ttcctcgtaa aaactgctta caaggaaaga
     3301 aaaggaatgc aagagacaag cggtcaaaaa acggaaattt tttgcaaaga attagcaaaa
     3361 aaacaccgct tgtatcgtat aacttttctc ccctgtcctt ttgcctgagc gtttcacaca
     3421 ttgctgtatt ttcgccttcg gcggcggatt ttaatccgct ctctccaagg gttcgtccag
     3481 taacagtccc cgcagtgttc actgcacctg aaagagttta cctcgtcggt gaaatgttaa
     3541 ttcatttctc tccagctacc ttcatccgaa caatctaatt tattttataa tgtaaaataa
     3601 aaaagatttg ccaaattcta gcaactcttt tgcttccgtc aagtgaattt aacgatattt
     3661 ttgttctttc ggtacttctt ctaaatcgct aaataatacg gcatattttt gggtggcttt
     3721 attggattct aatgccactt tacacgccat cgtaagtgga acagaaagta acattcctac
     3781 ggtgccaagt aaccaccccc aaaatagaag tgagaggaac actacaaggg tagaaagccc
     3841 gagtttcttg cccattaatt taggttcaag cgcattaccc acaaccatat taatcacgac
     3901 aatgccgatt aaagtgccta atcctataga aaagccattg agtaccaagg cttgaatcac
     3961 aattggaatt cccgccaaaa tagagccgat attcgggacg tagttaagca ggaaggttag
     4021 aattgcccat aaaatcgcat attctacgcc tagaatttct agtaagatcc aaactaaccc
     4081 tccggtgagt aggctcacaa aggttttaac tccaaggtaa ccaatcaccc cttcaagtac
     4141 ttggttgata tactcttttt cgttgcttaa atcatcatct gggctaagtg cgagggctaa
     4201 tttatatttg gcaaccggca tttccaatag cataaaaatg acgactaaga aaatcacaaa
     4261 aatattcgat aatgcaccgg atagccccat tagcagtttg ctgaccaaat tcattattga
     4321 gcttgggtca aatttgctca taatctcttc ttgtgagagg gtaagtggaa tatgccatct
     4381 atgggcgagt tctagaatca cctggattct agatgaaagc tgaattttgt attgcggaat
     4441 agcattagta aattcttgca aggtgttatt aataatgcct gctaagaaac tgaatcctaa
     4501 gataaaaaca ataagtaaaa tggtaatggc taaccataat ggcactttac gcttagtcat
     4561 aaatttgatc attggtgaac aaataatggc aataaatagc gaaagtaaaa atggcacaac
     4621 aatttcattg gataatttaa tccctgccag aataatgata atggaggcta tcgccacgag
     4681 agttttggtg gaatgtgtca taatttttcc ttttacaagc ggttaaaaat cagcaatttt
     4741 ttacaaatta gtgattctca aaccaacttt ctaaaattaa acaagcggaa atggaatcca
     4801 ctttatcctt ttttaatgct ttgtaaccac cacgagaaaa aatttccgct tttgcttcaa
     4861 cagtagtgag gcgttcatct tgtagctcaa ccggcagatt aaagcgtccg tttaagcgat
     4921 tggcaaattt tctggcacgc tgagttaaag gctgctctgt gccgtccata ttcaagggta
     4981 gcccaacaac cagcatatct ggtttccaat cttgcaagag ttttccgatc tcttcccagt
     5041 ttggaatacc gtcttgggct ttaaatgtag ttaaaccttg agctgtgccg gtaatacttt
     5101 gtccaactgc acagccgatg ctatttgtgc caaaatcaaa ggcaatcacg gtttttgttg
     5161 tggtttctgt cattaagctc tcccagctct tgacggtatg cttgaaagcc ccatcatttc
     5221 ataggcttct gcccaacgct ctaaataacc ggtttcaaac agcgtttttt cattcgcatc
     5281 agacacaatc caataatttt gagcaatttc ttgctcaagc tggctgccac gccaagtgga
     5341 acaacctaaa cacacaataa atttttcagg tgaagccagt gtgccaaagg agtctaacac
     5401 atcaccggag gtagtgagcg taattttatc ggtgatcgga taagtgtgaa taaaatcatt
     5461 ggcggttttg gtgtgaataa taaagccacg atcttgattt accggcccac cgcttaacac
     5521 catttggtct tttttgtaat cacgctggtt cgccatttgg aaatccattc gggtaatcag
     5581 ctctagaacc gacagatcgg taggagtgtt aattactact cccattgcac cttgcggatt
     5641 atgttcgcaa atatagacca ccgtacgctc gaaatagtca tcgtccattt ccggcgtggc
     5701 aattaaaaat ttaccttgta aattctctaa cattaaatat ctccaaaaca aacttgtaac
     5761 gcagtaattg ccgcaagtga ggcggtttct gtgcgtaaca ctcgtttacc cagtaatact
     5821 tcagtaaaac cttcgctctc ggtcatggcg atttcttcgg cagataatcc gccctcagag
     5881 ccaatcagta aacgaacacc agctttcggc acattcggca gttcacgaat ggtatatttg
     5941 gctcttgggt gcaaattcag tttcaacata tcgtcttgtt ctttgcacca gtcggtgagt
     6001 ttcataatcg ggcgaatttc agggatttca tttcgtccgc attgttcaca ggcggcaatc
     6061 gcaattttct gccattgctg taatttttta tcttgccgtt catcattgag tttcacgcca
     6121 caacgttccg accaaagtgg ggtaatagtt tttaccccca gctccaccga tttttgaatg
     6181 gtaaattcca ttctatcgcc tcgggaaatc acttgcccta aatggatcgg caggttggat
     6241 tctcggtcat ctaattcact tgaatcaatt tttgcaataa tttgcttttt ttcgaccgct
     6301 tgtaacgtag cgtggaaaac gtggtttgaa ccatcaaata aaatgatttg ctctccttgt
     6361 ttcattcgta gcactcgccc aacgtggtta gcggcatctt cacttaacac gcaactttga
     6421 agaccagcta acggctgtgg ttggtaaatt cttgggattc tcataattat ctagttataa
     6481 attaaaggca gacgattgtc tgccataggt aagttaaaac gggttaagga taaagtcttg
     6541 aacaatgcac aatagtaata atcgaaattt cattctcttt aacttcacac actattctat
     6601 agccgttatg atatagttct ctcgtattaa taa
//
LOCUS       DANMGB010000135         6630 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.135, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000135 DANMGB010000000
VERSION     DANMGB010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6630
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.135"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(71..1762)
                     /gene="dld"
                     /locus_tag="PXG19_001981"
     CDS             complement(71..1762)
                     /gene="dld"
                     /locus_tag="PXG19_001981"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL6067251.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1974..3071)
                     /locus_tag="PXG19_001982"
     CDS             complement(1974..3071)
                     /locus_tag="PXG19_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6067252.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
     gene            3401..4117
                     /locus_tag="PXG19_001983"
     CDS             3401..4117
                     /locus_tag="PXG19_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6067253.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(4160..5078)
                     /locus_tag="PXG19_001984"
                     /pseudo
     CDS             complement(4160..5078)
                     /locus_tag="PXG19_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(5080..>6630)
                     /locus_tag="PXG19_001985"
     CDS             complement(5080..>6630)
                     /locus_tag="PXG19_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL6067254.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1910 a         1346 c         1246 g         2128 t
ORIGIN      
        1 agcaactgtt ttgtccactt ggcatagttt ttgacggatc agcaactatt ttgtctacta
       61 tgcctttttg ttacttccag tattttttct tcgaggtttg cccgatcccc ggattaaagc
      121 tgttggttgg atcaagctgc cggtagaatt tgcgtaaggt cggttttgct tcgtaaagat
      181 gaccgacatt atgctccgca gggtattgtg ccccacgttt atccagtaat tctaacatct
      241 gatgttccaa cgccaaacaa tctacacctt ttttcacaat atagtcttga tggaaaacat
      301 ggcacataaa atgcccataa taaagtttgt gcgtgatttg actctctatt tccggcggta
      361 gcacttcaaa ccacgcttta tcatttcggc gaagggcaat atctaaagca acaatatctt
      421 ccacctcttt atcgtgaatg gctcgatagc gaatcgctgc cgaagcaacg gcaaaacgat
      481 gtaacattgc cgcttggctt tcagtcggat tacactccaa ataaccgcct ttttgtgtat
      541 cagcaaaata acgggcaaga tagtctcttg cttcttgaac gccttttcca cccattttga
      601 taattaagtg atgttcatac tggttacggt agtctcgaag actttccggc aaatgttgcg
      661 gtaacatttt tgagattgcc tgtaatattt tatcactgag atttgccggt aaaaaggtga
      721 gtttcttcgc cattctgtcc acttttgctt taagtgaaaa gagttgtggt aagcggtgtg
      781 taccgagttt tttaatcacc caaaaagtat ctttaccgta atcagcggca atatcaaagg
      841 catcacgatg aatatattca ccggaaatcg gcaatacctc aaagttggct aacatatagc
      901 gacgaatatc gtttaatgtg tccgtatgat ttgtcccgat ataaaaaaca gccgtgtctt
      961 tttcaagcgg aaaggtatct aatcgcaccg caaacaccgc taactttcct gcactaccgg
     1021 cagcctcgta gtggcgggca ggatcggcat taaaacgggc aggggagtct tcatcaattt
     1081 ggcggacgtg attacaatag gcgtgatcgt gtccttttcc gcacgcttgc tgaatatcct
     1141 tacgctgata acgttgggct tgcagatttt ctaaaatttc ttccggcgta tcacctaaat
     1201 caatacctaa atggtttttt aattccagcg tgccgtcttc atttaactgg gcaaacagtg
     1261 ccatttcagt ataagccggc ccacgttgca ctaatgcacc ccctgaatta ttacaaatac
     1321 caccgataac cgaagccccg atacaggacg atccgatcac cgaatgcggt tcacgtccgt
     1381 gcgttttcag caacaattcc agctcattta atgtcgagcc cggtaagcaa acgacttgat
     1441 tggcattgtt aattaactga atgccgttca ttcgcattgt gttaatgatc acaatatccc
     1501 gatcataatc gttgccgctt ggtgttgaac caccggttaa tccggtattg gccgcttgtg
     1561 agataacaat gacatcggcg gcgacacagg cttttaatac gttccagtat tctaataacg
     1621 ttgtaggttt taccactgca atcgcactac ccgtgccaaa gcgatacccg ctacgatagg
     1681 cttccgtctt agtcgggtca gtgatgatat aagactgccc gacaatttca gtaagctgag
     1741 aaatcagtga attatttgac attatgcttc cctcaaaggt agaaatagat agggcagtat
     1801 agcaataaac aaaagagagc aaagcagaat gttacaaaat tgtgaactac tgcacagaat
     1861 aaatgaagaa atgaagtaaa agaaagcgag ctaaaagagc gtcgcccgct ttatttgtag
     1921 aaaatcaaac ctaatctgac agtcccccgt ttaaaattac cgtgtctgtc agattaattt
     1981 gagcttaaat tcttttctgc ccaaatgcgt tttccatcaa ctaatgtctc catcggtgtt
     2041 cttccacagc acatttttcc ttgatgggtt cgatgatggt tataatacat taaccattca
     2101 tctaagtcag cttgcaatgc ctctaaatcc atataaatcc gttttctgaa tgccacttgg
     2161 tagaactcct gcaaaatcgt tttgtgaaaa cgctcacaga tgccgtttgt ttgtggctgt
     2221 ttcactttgg tttttgtgtg ctctatgtca ttgatagcca aataaagctc ataatcgtga
     2281 ttctcaactt tcccacaata ctcactgcct cggtctgtca gcactcgtaa cataggtaac
     2341 ctctggcttt caaagaatgg taatactttg tcatttagca tatcagcagc agtgatagcc
     2401 gtcttcattg tatacagttt tgcaaatgcc actttactat aagtatcaat aaacgtttgc
     2461 tgataaatac gacccacacc tttaatattg ccgacataaa aggtatcttg tgaccctaaa
     2521 tagccggggt gtgccgtttc aatttcacca caggcaatct catcttcttt cttccgctcc
     2581 aaggcttgta tctgtggctc actcagaata atgccttgct ctgccaccaa tttttcgagg
     2641 gcagttaagc gttgcttaaa attagctaag tgatgtctca accaaatgga acgtacacca
     2701 cctgcagaga caaaaaccac ctgcagagac aaaaaccacc tgcagagaca aaaaccacct
     2761 gcagagacaa aaatcccctg tttacgcagt tcattactca ctcgaacttg accaaaagca
     2821 ggattatcta aagcgaattg tacaaccgct ttttctgtgg attcatccac acgattttta
     2881 atgttgggaa cacgtcgatt ttgatttagt aatgcctcaa caccgccttg ttcgacagcc
     2941 tgttgatagc gataaaaagt atctcgactc atccccatta ccttacaggc ttgtgagata
     3001 ttacccagtt cttctgctaa atttaataaa ccggtcttgt gtttaataag tggattgcta
     3061 gaataaaaca tgagagtttc ctttttgttt agattgattt ttgacactca tattctaaac
     3121 gggaaactct cactttttag agtgaattgt cagatcaagt ctgatcttct acagacgatc
     3181 caggtcttac acattctttc aagtttgtaa agcctgaaaa ttatttttta tacttgattt
     3241 ttgtcaaaaa gtctctacac tatatggcag ggtcagtttt cgctgtttaa cggtgtttaa
     3301 tgagattttc attactggct ctccttaata gaaatttatg gaagagctat ctgatagagt
     3361 aatctagcga tagctctttt tcattgaaca aagaggctat atgtatctta tgtatgttga
     3421 tgagtctggt tctacgacag atcctactca aaaatatttt gtattatcag gtatcgctgt
     3481 atttgaacga aatactcatt ggattgagaa aaaaatgaat gtgatagcct ctcaattctg
     3541 tcaatattct gaagggagtg atccatattt ctatgagtta catggttcac caatgagatc
     3601 tggaaagagt gaatggagag gcattccaat gagtgagcgt attaatgcca ttcaagattg
     3661 cttgaaatta gttcaaagta ataatattcg tatatttgca gcagttatag agcaagggta
     3721 ttctagtggt caggatacta ttacagaatg ttttgagcaa atatcatctc gatttgatat
     3781 gtatctgagc cgtttacatg cccaaggtaa tacccaaaga ggcatttcta tctttgataa
     3841 atcatcgact gagaagtcaa tccaagcact tgcaagaaca ttcaaaaata gtgggcatac
     3901 ttatgggaaa cttagaaatt tctcagaagt tccattattt cttgactcaa agtcatcgag
     3961 attaattcag ctagcggatc tagtttccta tgcgatattt agacactatg aacacaatga
     4021 tagctcattt tacgatatta taagaaataa ctttgattat cataacgggc gtattcatgg
     4081 tttatattta cggaacaaag aagatattat ttcataaaaa ttcgccccaa aagggagaag
     4141 tatctccctt ttgtattttt tataacaaat taaccgtttc tctcaacatt tccacatcgt
     4201 gttcaatata tcctagtgtc acactgatat ctttatgccc taacagtttc tgaaccacat
     4261 aaacattttc gggcttcttc attaattgag tagcaactgt atgtcgaaat ctgtgtggtg
     4321 atgaagtaaa accgaccaag tcagaaatat gccgaaatat atgtgtaagc tgattttggc
     4381 tcatcggctg tcctcttctt cgagagcatc gagaaaataa attgagattg aacaattggc
     4441 aattatctgt ttgttttctt atttttaatt cagtaataag cctttctata tgaatataaa
     4501 gtgaatctga aatcggtacg atatggtaat catgattttt attgatttcc ggcgaaatat
     4561 aaatcgtcct attagaaaga tctacatcac taattttcag tttcactaat tgtcctcgcc
     4621 gaatccccgt acatctcaat gtcataataa ttgcaaggac aaaccagctt ggttttagaa
     4681 agtcaggtaa tacaacgtta ttattgagta tgtggtctat tttatgtaat tgttcggttg
     4741 aataagtttt ctttctcctt ttcgattctc gaataaataa ctgattaaat ggatttcgat
     4801 ttatattaag taatccttgc gatataccaa agttatataa ggcttttaaa tgtctgacat
     4861 aattattcca cgttactgct ttgattttat cgccaacaat ttgattacgc cattcaatga
     4921 gcatatcggt ggtaatgtca ttggcattta actttggata acgctttttg ataattcgga
     4981 ttacgttgtt gtagctccgt ttggtatccg gacgaagata gtgacgatag aaaaaaaaat
     5041 cggtctagta gcgaatcaaa agagatagaa gttatcattt taagtttcct ctttctgtaa
     5101 agttaaacag tgattattta atagtacctt atccccaaaa aagagacggg tattttttat
     5161 caaatatcct gttaaagagg aagtctttct cggtccaatg acatcacatt tccaaaaatt
     5221 gatggtatcc ggcttaccgt tggtcattgt gtttttaggt gaatgaatcc ctaatccttg
     5281 aaaatcatac tggagattat taattgtttc cttatcataa ggctgtccag tctcttgcaa
     5341 atacatttca aaaataacgg gggtaactaa aaacaggtgg tcttcaacaa tatggagctt
     5401 ggcagtaggc ttgttaattg caaatttgtt ggtcgcaata cctgatttga gccactttac
     5461 aaagttatct cctgtaattg agttctcctt attctgtaac tgtagctctg atagtgttaa
     5521 tgtttcgggc gtttctactg cactttgtgt tactttgagc tttttagtgg tagatttatc
     5581 ctgtacttct tgtttggatg gcatacttgc aatttcctgt cccttaccaa ttgaaatatc
     5641 atcaaggctt ggttcggaac tttccgtagg tgcaaacata tccagcacaa aggaggttaa
     5701 atcattttca tcatttatga tgatttctga ggatggtgca ttatccgagt ttgtctctac
     5761 ctgagatatt tcaacttctt tagaggcaat aatgccccct gtctgaacac tcggtaatgg
     5821 agctggttta gtggtcccat cgactaatgt agactgagtc tctatattac tttcttctgt
     5881 tatctgctcg actattttaa cttttccggc aaaataattt ggtcgatcat taatattctc
     5941 ccaagccact tctggtttaa ttctcaataa tgtaaaggta tttgctggcg tccaacctga
     6001 atcagcttga atacggcaac tccaaattgc tccaccagcc ggtgattctt ctacaatacc
     6061 gagagactgc atttcatcaa ataactttgg attatcctta ggcactgaaa ttccctgccc
     6121 cagtaagtaa gctcggatat tatcagcagc agttttgcta acaagccaca atccttcctc
     6181 agtgaaccaa ccgtctgccg gacctttggg tgtatttaac tttattttct gttccagcaa
     6241 ataacgtagt gccaagacca gttgctttga cagagaattg acaggacgtt gaaccagttt
     6301 atttacatcg ccaccgagtg cgagggtaac actatgctga tcggctttct gcacgatctc
     6361 agataaaagc ccggctttat cgttatgccc agacattgca tacatcagtg aagaaatgac
     6421 ttctggatac tgtcccagcc aatcaaacgc agattttgga ataagttgat ttgcaaggaa
     6481 gcctcctagc accggatgaa gatggtagtc tcgacctttg atgtatttga atttataagg
     6541 ttgaggtggt aacccattcc aagcaaacca acgtgaaccg tctttgagtg taatttcaat
     6601 atcaacgaca actttgccaa tatcgtgaac
//
LOCUS       DANMGB010000136         6561 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.136, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000136 DANMGB010000000
VERSION     DANMGB010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6561
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.136"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            93..788
                     /locus_tag="PXG19_001986"
     CDS             93..788
                     /locus_tag="PXG19_001986"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL6067255.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            804..2114
                     /locus_tag="PXG19_001987"
     CDS             804..2114
                     /locus_tag="PXG19_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6067256.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            2292..3743
                     /locus_tag="PXG19_001988"
     CDS             2292..3743
                     /locus_tag="PXG19_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6067257.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(3819..4643)
                     /gene="iolB"
                     /locus_tag="PXG19_001989"
     CDS             complement(3819..4643)
                     /gene="iolB"
                     /locus_tag="PXG19_001989"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL6067258.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            4862..6373
                     /locus_tag="PXG19_001990"
     CDS             4862..6373
                     /locus_tag="PXG19_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6067259.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
BASE COUNT         1826 a         1251 c         1528 g         1956 t
ORIGIN      
        1 tttgcatact gattcgattt attgcatttc ttttttgcat aacttgtttg tataagtcat
       61 cgcagtaaat taaatcttat aaggagaagt gtatggcaag aaatattatt ggcattttag
      121 gtggaatggg acctgcagca acagcagata tgttccaaaa atttatccgc ttaacaccag
      181 ctgattgtga tcaagctcat attccattat tgatttcctc tattcccgac ataccagata
      241 gaactcgcta tattttagca aatggagaga atccggctcc ggtaatggaa aaatatattg
      301 aagggcttga gagtgcaggg gcaacctgca tcattattgc atgtaatact gcacattatt
      361 ggtttgaaca cttgaaggcc aaaagtcagg tagagatgct aagtatgatt gattgtgtgg
      421 ttgatgaggt tttgaagtgt ggaaaatggc gggttggatt gttggcaact gatgcaactt
      481 tggcggtaga cctatacaaa aaacagcttg aagcacaagg actgactttt atttgcccga
      541 cagaaaatgg tcaaaaggca gtaatggata gtatctattt attaaaatca ggtgagttag
      601 agaaagccac agagctaatg ttacaacaac gtgatgaact cattcgttta ggtgcagaag
      661 taattatttt aggttgtaca gaagtaccta ttattttagc tcaagaaata gagcgtgagc
      721 caatgcgtta tgtagattca acgttggtat tggttaaaaa agcaattgat tggtatcaaa
      781 ctcattaatt taaggagatg gatatgattt atgcagaaat ctttgtggta cttgctgcaa
      841 tctatttagg actgcgttct gggggcttag gaataggact atatggtggt ttagggcttg
      901 cgattctaac tctaggtttt ggtttaccta tgggttctat tccagttgat gtaatgctga
      961 ttattatgac tgttgtaata ggtgctgctg tgttacaagc agtaggaggt atggatttac
     1021 ttgttcgtta tgcggaagta ttgatgcgta aaaatcctaa atatattaac tttattgcac
     1081 cgatgattac ttggttaatg acgattatgg ctggtacagg ttttatcgtc ttttccacct
     1141 tacctgtgat tgcagaagtg gcaaaagaga gtggtattcg cccttcaaga gcattagccg
     1201 gctcggttgt gtcttctcaa ttagctattg caggttctcc attgagtgct gcaatggcgg
     1261 ctatgatagc agtaatggaa aacaacagtg ttacattttt tcaagtaata gcagtatgct
     1321 tacctgtttc ttttattgcc tctatggttg ctgcatttgt tgcttctaag cagggctgtg
     1381 aattgcaaaa tgatgttgtt tatttagaac gtttaaaagc aggaatcgtc agcccatctc
     1441 gtaagttagc gagtgaatct acctattcaa aaggagcaaa actatcgatt ggcattttct
     1501 tactagcaac tgtattggtt gttctacttg cagccgttcc agggttaaag ccagtatatg
     1561 aaaatgggaa gtcaatgagt acccgagata taattattgt gatgatgtta gcctcttcgt
     1621 gcttaatgat gttggtagga aaaattaaac ctgatacgat tgtggctagt ccaattttcc
     1681 gctcaggaat gacttctatt gcggtaatta tcgggattgt tacattaggt atgacttttg
     1741 tcgatgcaca tttaatagaa attaaagcct ctattggaaa tattttaact gaatatccaa
     1801 tgttgttagc tgtagtactc ttttttactt gtgcattact ttattcacaa gggtcaactt
     1861 ctgctcttat tattccatta gcagtaagct tggggatccc taactgggca attttggctt
     1921 ctttcattgc aattacaggc atttttatcc tgccaaccta cccaacttca ttagcagcga
     1981 tggaattaga tactacgggt tcaactcgtg ctggcaaata tattatagat catccgttta
     2041 tgcttccagc tttagttggg gttgctgttg ggcttgcttt tggattcgta tgggctccaa
     2101 tgattgtatc ttaattatta aatatgtaga gaatttaagt taattctcaa taataaatgg
     2161 ctgcacctta gaagaacgct tgtctaaggt gctttattat tgagtaaaaa gttatttttc
     2221 agctcttttc tctttactga aattggatca tagtcaatat tgttctcttt ttaaccattc
     2281 aaggagtgat tatgccaaat cacaaatttt tgctactccg tttccaagcc tatattaacg
     2341 gtaaatttgt ttcaagccaa aatgggaaaa cctttacggt acagaatccg actaatggtg
     2401 agaaaatcgg tgaggtggct gatttaggca cggaagaaac cgctcaagcg attgaagcag
     2461 ccgcagttgc ccagaaaaaa tggcaggcat tattgcccaa agagcgttcc gtgattttgc
     2521 gtaaatggtt tgagctgatt atgcaaaacc aagaagaact cgcccagatt ttaagtctag
     2581 aacagggtaa accattggca gaaagtcgag gcgagattgc ctatggagcc agttttatcg
     2641 agtggtttgc cgaagaaagc aagcggattt atggcgatgt cttgccacaa gataaagccg
     2701 gtcgccgctt gtttgtgact aaacaaccca ttggcgtggt ggcagcaatt acaccgtgga
     2761 atttcccaaa tgcaatgatt acccgtaaag cggcaccggc gttagcggca ggttgtgcga
     2821 ttgtgattaa accggcggca gaaaccccgc tttctgcctt agcattagcc caattagcgg
     2881 atcaagcagg tattcccaaa ggggtattta acattattac cagtagcgat gtcgaaggtg
     2941 tagggcggga gttgagcact aatccgaccg tacgcaaact cacctttacc ggctccaccc
     3001 gtgtcggcaa aattttaatg caacaatcgg cagggacggt aaaaaaattg gcattggagc
     3061 taggcggtaa tgcaccggcg attgtgtttg atgatgcgga tctagataca gcggttgagg
     3121 gcgtgtttgc ctctaaattc cgtaacggtg ggcaaacctg cgtctgtgct aaccgaattt
     3181 atgtgcaagc gggcatttat gagcaatttc ttgcaaaatt gagtgagaaa gtggctcaaa
     3241 tcaagcttgg ctcgccattt gaggaagagg tcacgatagg tgcactaatt agtgaacgag
     3301 cggtggaaaa agtcgaaagc cacattaacg atgccctttc acttggggca gaactggtgt
     3361 taggcggtga acgccacgca ctgggtggca cattcttcca gccaaccatt ctgaaaaatg
     3421 tcactcaagc gatgaaagtg gctcgtgagg aaacctttgc tccccttgcc ccgattttca
     3481 aatttgaaac cgaagaagag gttatccagt gggcgaatga tactgagttt ggtttggcgg
     3541 cttacttatt cagccaaaat atcgggcgaa tttggcgagt atcggagcag ttggaatatg
     3601 gcattgtcgg gattaatgag gggatcatca gtaacgaaat cgctccgttc ggcggctgga
     3661 aagagtctgg acttgggcgg gaaggttcga agtacggtat tgaagagttt ttagaaataa
     3721 aatatctttg tatgaaagta taaccgaatg ggacgccaaa agcgtcccat ttttaatccc
     3781 ttattttgta aaaaattggt ggaaaaagac cgcttgcatt actcaaattt ggctttatag
     3841 gtttcactgt tcacccaaag atgatcttgt tcccaagtaa atttccattt gcgtaccggc
     3901 cctgccataa catttaggta gtagttgtta tagccggcaa tggtagcaac agggtggtag
     3961 ccacgaggca ctttaaccac atttttatca tacaccgcca tacattcatc aagtgtgcga
     4021 tcatcggtat aaacccgttg cattgcaaaa ccttgtggtg gatcgaagcg gtggtagtag
     4081 gtctcttcca aataggtttc ttcggtagag tgtttgtcat cgtgcttgtg gcttgggtag
     4141 gaactggtat tgccttcatc ggtaaagact tccaccacca gcaaactgtc ggctgcttcg
     4201 gtttccggca gaatattatg caccaagcgt tgattgttgc caaagccccg tttttccaca
     4261 ccgatatggt tcgggctaat caaacgcacc ggataattac cctgacttgg tgctttgcac
     4321 actgccaatt ctaaattgag ttcggtttta accaacacgc ttttgtgtgg cgggatatag
     4381 accgcataag gcggaatttt ttcaaatggc gtggtacggt tgccgatatt ttcaaaagca
     4441 taatcatcaa catagacaga gccaaaaccg gtcacaaaga ctagacaaag ttcattttca
     4501 ccactttcca gcgtaatttg ttgcttactg agctgataaa catcaaatcc aacatattcc
     4561 cactgtgcat tttcaggggt aatgtgctga attaaccctt catgttggtt gaaattgggt
     4621 ttagacaata atggactaga cataggaaac ctcgcttaac gaaatggaat acgctttcaa
     4681 actatacgaa attttgtctc attttaatac cggcaatctg taaacttgct acttagatca
     4741 caaaaatgaa ataaaatttt cattttttag tattatgtat tgatattttc catttttagc
     4801 ggtagtttat cggctgtatt ttatccgttt ttcctctcaa tcagttgata aggagcctcc
     4861 aatgagccaa tttgtccaaa attttattaa cggtgcagtc gttgaaagcc aaagccagcg
     4921 tgttacctcg gtatttaatc ccgcaaccgg tgaagagacc aaaaaagtca aattaagcct
     4981 gccaaacgaa gtcgatgcgg caattgcagc ggccgatcag gctttcaaaa gctggtcaca
     5041 acaatcacca ctacgccgtg ccagaatttt atttaaattc aaagagttat tggaagcaaa
     5101 ctttgatgag ttggctcgtt taatcagctc agaacacggc aaaatctatt ccgatgcgat
     5161 tggcgaatta acccgtggtt tagaagtggt ggaatttgcc actggtattc cacacttaca
     5221 aaaaggtgag ttctccgcca atgcagggcg tggcattgat attcactcaa tccagcaacc
     5281 gttgggcgta gtggcaggca ttaccccgtt caatttcccg gcaatggtac cgatgtggat
     5341 gttcccagtg gcacttgctt gcggtaacac tttcgtttta aaaccgtctg aaaaagaccc
     5401 aagtgtgtct attcgcttgg cagaattatt aaaagaagcc ggcttgccgg acggtgtatt
     5461 caatgtggtg caaggtgata aagaagcggt agatattctt ttaaccgact ctcgcattca
     5521 ggcggtgagt tttgtcggct caactgcaat tgcacaatat atttatgaga aaggctcagc
     5581 aaacggcaaa cgggttcaag ccttgggcgg tgcgaaaaac cacgctttga ttatgccgga
     5641 tgctgatgta caaggcacaa ttaatgcctt actgggcgca gcatttggtg cagccggtga
     5701 acgttgtatg gcactatcgg tagcggtagt tgttggtgat gaattagccg ataaaatcat
     5761 tgaagagcta attcctaagg tcaaagcatt gaaaatcggt tcaggcttac taccacaagg
     5821 cgtgcttgaa aatgatatgg ggccggtgat ttccaaagag cataaagcca aaattgagag
     5881 ctatatcgat caaggggtgg cacagggggc gaaactctgt gtcgatggtc gaggctataa
     5941 agtcgaaggg tttgaaaacg gttactttgt cggaggtacg ctgtttgata acgtgacacc
     6001 tgaaatgacc atctggcaag atgaaatctt cggaccggtt ctctctgttg tgcgtgtgaa
     6061 agattatgcc gaagggatcg cactcattaa cagtcaccaa tacggcaatg gtagtgcaat
     6121 tttcaccgca gatggcgatt cagcacgtca attcacccaa gatgtacaag ccggtatggt
     6181 gggcgtgaat attccaattc ctgtgccaat ggcgttccac tgctttggcg gttggaaagc
     6241 ctctattttc gggcctctca atgtgtacgg cacagacggc gtgcgtttct acacccgtat
     6301 gaaaaccatc acaacccgtt ggccggacag ctcggtgcgt agccaagcgg catttaattt
     6361 cccaacctta taataacgag tacatttctt ttttgagtgt ttagcggtga gaaatcaccg
     6421 cttttttatt ggttttcatc tcacaagcgg tcatttttat tcaaattttt gcaaaaaagc
     6481 gacctgtttt gaccgcttgc atttatctct tcctaaaaat gtgatctacg taacaaattt
     6541 gaaacaaagc atttggtttg g
//
LOCUS       DANMGB010000137         6542 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.137, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000137 DANMGB010000000
VERSION     DANMGB010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6542
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.137"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            80..1507
                     /gene="aspA"
                     /locus_tag="PXG19_001991"
     CDS             80..1507
                     /gene="aspA"
                     /locus_tag="PXG19_001991"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL6067260.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(1582..3600)
                     /gene="rep"
                     /locus_tag="PXG19_001992"
     CDS             complement(1582..3600)
                     /gene="rep"
                     /locus_tag="PXG19_001992"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL6067261.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            3848..4963
                     /gene="potA"
                     /locus_tag="PXG19_001993"
     CDS             3848..4963
                     /gene="potA"
                     /locus_tag="PXG19_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL6067262.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            4950..5813
                     /gene="potB"
                     /locus_tag="PXG19_001994"
     CDS             4950..5813
                     /gene="potB"
                     /locus_tag="PXG19_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL6067263.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            5813..>6542
                     /gene="potC"
                     /locus_tag="PXG19_001995"
     CDS             5813..>6542
                     /gene="potC"
                     /locus_tag="PXG19_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL6067264.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTL"
BASE COUNT         1897 a         1310 c         1300 g         2035 t
ORIGIN      
        1 gatttagatc gcattatttg tctattaaaa tcgttattat ctaccaaaat cgattgtcat
       61 ttattttaag gagatgaata tgtcagatgt gcgtattgaa cacgatttac ttggtgaaag
      121 agaagtacct aatagtgctt attggggcat tcatacatta agagcgattg agaattttaa
      181 tatctcaaat gtcaccattt ctgatgtacc tgaatttgtg cgtggcatgg taatggtaaa
      241 aaaagctact gcgttggcaa atggtgaatt gggtgcaatc ccgaaaaaaa ttgccaaagc
      301 tattgtggca gcctgtgatg aagtattagt gaaaggacgc tgtctcgatc aattcccttc
      361 agatgtttat caaggtggag ccggcacatc ggtgaatatg aataccaatg aagtgattgc
      421 caaccttgca ttagaaattt tgggcgaggc aaaaggtaaa tatgatattg tcaatccaat
      481 ggatcacgtt aatgcaagcc aatccaccaa tgatgcctat ccaaccggtt tccgcatcgc
      541 ggtttataac agtatcacta aattaatcaa taaaatcact tacctacaaa ctgcatttga
      601 aaataaagcc actgagtttt ccgatgtact aaaaatggga agaacgcagt tacaagatgc
      661 cgtgccaatg acgctcggtc aggaatttaa agcttttgcc gtattattag atgaagaggt
      721 tcgtaacctt aaacggacgg cagaattgct tcttgaagtg aatttaggcg caaccgctat
      781 cggtactggt ctgaatacgc cagagggtta ctctactctt gcagttaaat atttagccga
      841 agtcacgcaa ctgccttgct cactgtctga aaatctcatt gaggcaacat ctgactgtgg
      901 tgcttatgta atggttcacg gtgcattaaa acgcaccgcc gtcaaacttt ctaaagtgtg
      961 taatgactta cgattacttt catcaggccc acgtgccggc ttaaatgaaa ttaatcttcc
     1021 ggaattacaa gccggctcat ctattatgcc ggcaaaagta aaccctgttg tacctgaagt
     1081 cgtaaaccaa gtgtgcttta aagtgattgg taacgacacc accgttactt ttgcagcaga
     1141 ggccggtcaa ttacagctta acgtaatgga gccggttatc gggcaagcaa tgtttgaatc
     1201 tatcgagctg ctttccaatg catgtattaa tctacgtgat aaatgtattg acggtattac
     1261 cgctaaccgt gacatctgcc aaaactatgt gttcagctct attggtattg tgacctacct
     1321 caatccattt atcggccacc ataatggtga tattgtcggc aaaatttgtg caaccaccgg
     1381 caaaagtgta cgagaagttg tgcttgagcg aggcttactc accgaagaac aactcgatga
     1441 tattctctcg attgagaact taatgaatcc gacttataaa gccaaacgct ttaccgaaga
     1501 ggaataatca ttgtttacaa gcggtctgat tctggcaaaa aattgcaaat ttttaccaaa
     1561 atcagaccgc ttgttatccc attatttctt atttgctttc agcatcgcca ttaaatttgc
     1621 aatatttgca gaagattttg cctctttttc ctgttcggtc attcttggct tttcactttc
     1681 ccactccaaa tcatcttgtg gcaattccag taaaaaccgg ctcggctcag gtttgatgat
     1741 ttcgccatat tggcgacgtt ctttacacag tgaaaacgtg agcgtttgtt gggctcgggt
     1801 aatgccgaca taagccaaac gccgctcttc ttctacattg tcctcatcaa ggctggtttg
     1861 gtgtggcaga atcccctctt ccataccgat taagaaaacg tgcggaaatt ccaacccttt
     1921 cgaggcgtga agagtcatta gttgaacttg atcggcttca tcgtcctctt cgccacgttc
     1981 gagcatatct cgcaaggtta aacggtttac cacttgcacc aaattcatcg gaggctctat
     2041 ttcatcgccc tctaacatcg cttgcaccca ttcaaacaag gtctgcacat tacggctttg
     2101 catttccgct acttttgggt tcgccgccat ttcatacaaa taggcttcat actgaatttt
     2161 cgccaacaga tcttttactg cttcaatcgg atcggatcta tcggcttgat cggcaatttc
     2221 cacaatccag cgggcaaaat cctgtaaggc ttggtaaggc tttggcgtga ggcgttgtat
     2281 gagttcaaaa tcaaaaatcg cctcaaacaa actgacctgc ttttcattag caagtatgcc
     2341 taatttttct agcgttgccg ccccaatttc ccgtttcggc gtattcacaa tacgcaagaa
     2401 agctgcatca tcgtcttgat tcactaccaa ccgcagatac gccatcatat ctttgatttc
     2461 cgctcgagca aaaaatgacg taccacccga aattttatac ggaatgcggt tttgcattag
     2521 caatttttcc aacaagcggg attgatggtt gcctcgatac aaaattgcat aatctttgta
     2581 tttggtcttt ttcgagaaac gatgggcaat cagctcgccc acaatgcgtt ccgcttcgtg
     2641 ttcctcattt tttgcctcaa tgacctgtaa tttttcccct tgccccagtt ctgaaaacag
     2701 ccgcttgcta aacaagtgat cgttattatc aatcagaata ttggcacaat gcagaatccg
     2761 ctggctggaa cggtaatttt gctcaagttt aatcacttgc aaatcaaaat cttcccgtaa
     2821 ccgttgcata ttttcaggct tcgccccacg ccaagagtaa attgattggt catcatcgcc
     2881 cacgaccgta aagtttggct cgttgccgac aatcagctta attaactcat attggctggt
     2941 gttggtgtct tgatattcat caactaacaa atagcgaatt ttctgttgcc aacgagattt
     3001 tgcttcggga aattggcgga acagcaacac cggcaacata atcaaatcat caaaatccaa
     3061 cgcattataa gccttaagtt gattctggta gagctgataa aaatgtgaaa acactcgctc
     3121 acgttcatca cgcacacgag taagtaccct ttcaggcgaa agcaaatcgt ttttccagtt
     3181 agaaatagtg gcaattaagg ctttcagcag atccttatct tccgtcacat tttcaggcaa
     3241 taaatgtttc agcaaagcaa tttgatcctg ctcatcaaac aaggtcatac ccgatttaaa
     3301 accgagcaat ttatattcgc gttttaaaat ttcaaaccca agtgtgtgaa aagtcgaaat
     3361 ggttaaacct ttgctgtttt ctttgccgat agaatgatcc acccgttcac gcatttcccg
     3421 agcagctttg ttggtaaagg ttactgctgc aatctgctta ggcgaatagc cacaatgtgc
     3481 aattaaatgt gcgattttat taataatcac ccgagtctta cccgagccgg caccagccag
     3541 cacaaggcaa gcccctttgg tatattctac tgcttgttgt tgttgagaat tgagtttcat
     3601 tgaatctatt caaaagtaat tttgacaact attttaacgg aaagaaaaca agcggtcgaa
     3661 ttttcaggaa aatttgcaaa aaactttgaa aatccgaccg cttgttcatc agagaaaaat
     3721 ccccaaaacg caaatttttc ctttcaatct tgccccttta gctatatcat tataagttga
     3781 ttttttaggg gcaaatgcct gattttataa ctccttttct ttttaattta agggaaaaaa
     3841 acagtagatg gaaaaagtag aacagaaagc tatcattgag cttaaaaatg taacaaaaag
     3901 ctacggtagt aaaacgattc ttaaaaattt aaatttaacc attaacgatg gtgaattttt
     3961 aacaatttta ggcccttccg gttgtggtaa aacaactgcg ttacgtttaa ttgccggttt
     4021 tgaagattta actgaaggtt caattattct tgatgggcaa gatgtttcta acgttccggc
     4081 ggagcaacgc ccggtaaaca ccgtattcca aagctatgcc cttttcccac atatgacgat
     4141 ttttgaaaac gtggctttcg ggctgcgtat gcaaaaagtg ccaaatgctg aaattgagcc
     4201 acgtgtgatg gaagcattac gaatggtgcg tttagaagac cgcgctcaac aaaaaccggc
     4261 tcagctttcc ggtggtcagc aacaacgtat tgcaattgcc cgtgcggtgg taaataaacc
     4321 gaaagtattg ttgttagacg aatcgctttc tgcgttagat tataaattgc gtaaagagat
     4381 gcaaaatgaa ttaaaagcat tgcaacgtca attaggcatt acctttattt ttgtgaccca
     4441 cgatcaggaa gaagccttaa ccatgtctga tcgtattatc gtaatgaacg ctggtaaaat
     4501 cgctcaagac ggtacaccac gtgagattta cgaagagcca agtaacttat ttgtagctcg
     4561 tttcatcggc gaaattaacg tttttgatgc aactgtaatt gagcgtgttg atgcaactaa
     4621 tgtaaaagca aacgtagaag gtcgcatttg caatatcaaa gtggaagatt tagaggttca
     4681 gccgaaccaa aaattaaaag tattgttacg ccctgaagat attgtgattg aggagttaga
     4741 cgaaaacgaa agctcgaaag caattatcgg tcatattatc gaccgtaact acaaaggtat
     4801 gacattagag tctagcgtga gattagatca taacggtatg aatgtattgg ttagcgagtt
     4861 cttcaatgaa gacgatccga acattgacca cgaagtggga caaaaagttg ctcttacttg
     4921 gtatgaaggc tgggaggttg tgttaaacga tgaaggcgaa taacaaattc caaaatggtg
     4981 cggtcgcaac tattttcggt tggttattac ttttcgtatt agtgccgaac gtactcgttt
     5041 taatcatcag cttcttaaca gaaaaccgtc aaagtcagta ttttgtggac tttgcattta
     5101 gttttgatgc ttataaatca ctgtttaatg acacctatgc agcagtattg tggaactcgc
     5161 tatatatggc gggcattgcc acctttttct gtttgatcat cggctatccc tttgcatttt
     5221 ttattgccaa aatgccggaa agaattcgtc cgtttttact gtttttagta gttctaccgt
     5281 tttggactaa ctcactgatt cgtatttatg gcattaagat tttcttaggc gtaaaaggct
     5341 ttttaaatga aagcttgatg gctttaggta taatcagcga gccaatgcgt ttattaaact
     5401 cagaaattgc gattattatt ggtttagttt acattctatt accttttatg attctaccgc
     5461 tttattcatc aatcgagaaa attgataacc gcttactaga agctgcaaaa gacttaggtg
     5521 caaacgcctt ccagcgtttt attaaagtga ctattccatt aacaatgccg ggcattgtcg
     5581 caggttgttt attagtatta cttccggcaa tgggtatgtt ctatgtggca gatttattag
     5641 gcggcggtaa aacaccgtta gtaggtaaca ttattaagag cttgttctta aataccaacc
     5701 aatttgcatt aggttcagca gtaagtattg cattaactat cttaatggca ttaatgcttt
     5761 atgtttacta tcgtgcaaac aaattattaa ataaaaaggt ggagcttgaa taatgaaaaa
     5821 gatgtttaga aaccttttta tgttggttgt ttttgcatat ctctatattc caattatcat
     5881 tttagtgatc aactccttta atgaagaccg ctttggatta aattggaaag gctttacttg
     5941 gaattggtat gagcgtttat tcagtaatga tacgcttgta caagcaacat tgaactcatt
     6001 aactattgcg ttctttgcgg caacattctc aaccatttta ggggcattaa cctctattgc
     6061 gctttaccgt taccgtttcc gtggtaaaaa gctagtgggc ggaatgttat tcgtggtaat
     6121 gatgtcgcct gatatcgtaa tggcggtatc tatgctcgta ttatttatga tcttaggtat
     6181 caagctaggc tttatttcgc tattaattgc acacattact ttctgtttgc cttatgtggt
     6241 aattgcaatt tcctcacgcc tcagcgattt tgacggcaaa atgctagaag ctgcaaaaga
     6301 cctaggtgca agtgaagtga ctattttgcg taaaattatt ttaccactgg cattaccttc
     6361 gattatttca ggctggttgt taagctttac gatttcgtta gatgacgtta ttgtttcatc
     6421 tttcgtgaca agcccaagct acgaagtttt accactgaaa attttctcat tggttaaaac
     6481 aggtgtaaca cctgaagtga atgcactagc aactattatg attattttct cattaacatt
     6541 ag
//
LOCUS       DANMGB010000138         6534 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.138, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000138 DANMGB010000000
VERSION     DANMGB010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6534
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.138"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            29..280
                     /locus_tag="PXG19_001996"
     CDS             29..280
                     /locus_tag="PXG19_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6067265.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            264..611
                     /locus_tag="PXG19_001997"
     CDS             264..611
                     /locus_tag="PXG19_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067266.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(652..1812)
                     /gene="trmG/rlmN"
                     /locus_tag="PXG19_001998"
     CDS             complement(652..1812)
                     /gene="trmG/rlmN"
                     /locus_tag="PXG19_001998"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL6067267.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            2072..2968
                     /locus_tag="PXG19_001999"
     CDS             2072..2968
                     /locus_tag="PXG19_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL6067268.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            2981..3724
                     /locus_tag="PXG19_002000"
     CDS             2981..3724
                     /locus_tag="PXG19_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL6067269.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(3781..4590)
                     /locus_tag="PXG19_002001"
     CDS             complement(3781..4590)
                     /locus_tag="PXG19_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6067270.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(4583..5443)
                     /locus_tag="PXG19_002002"
     CDS             complement(4583..5443)
                     /locus_tag="PXG19_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6067271.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(5517..6302)
                     /locus_tag="PXG19_002003"
     CDS             complement(5517..6302)
                     /locus_tag="PXG19_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL6067272.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIHTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
     gene            complement(6390..6465)
                     /locus_tag="PXG19_002004"
     tRNA            complement(6390..6465)
                     /locus_tag="PXG19_002004"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6430..6432),aa:Gly,seq:gcc)
BASE COUNT         2106 a         1415 c         1288 g         1725 t
ORIGIN      
        1 ttataaaact tataaaatag aggcaaaaat gaaaatagtg gtattccagc gtaaagcctt
       61 aaagcaatta cgaaaaatcc caactggtgc agaaattcgc cgaaaatgtg atgatttagc
      121 ttactttccc tactgtgcca atattaaggc attaacaaat catcaatatg attatcgctt
      181 tcgggtcgga aattaccgta tttttttcaa tattgaaggc gaaacgatga atattgtgtc
      241 tatcgaagag gttaaaaaac gagatgaaag aacttactaa tattcaatat ttaaataatg
      301 aagaaggaaa acctgccttt gccgtacttc cgatagcaac acttgaatgg cttaagcaga
      361 aagcaaatat taaaaccgca atagagaccg gtattccatc tgctgttgct ggaattgcat
      421 tagataataa ctactcagct ctgcgtgctt ggcgggaata tttaggttta actcaagaag
      481 aggtggcaca acgcttgggg atttcgcaat cagcttatag ccaacacgaa aatgcaaaaa
      541 atctacgaaa aacgacccgc ataaaaattg cctatgcgtt gggtttaaat gaagagcaat
      601 tagatttcta ataacaaaaa ggcaggaacc tctgcctttt cactattcag attaatgggt
      661 tttaaccgca ataccttgcc cgaatttacg tttttcaagg gtgcgtttgg tgcggtcaat
      721 cacatcgcca gcaagctgtc cgcaagcggc atcaatatca tcacctcgtg ttttacgcac
      781 tgttaccgtg aaaccgtact ccatcaaggt tttttggaaa cgatctaccc gagagttaga
      841 gcttttacca taaggagctt ctgggaacgg gttccacgga atcaagttaa ttttacacgg
      901 cgtgtttttt aatacttcag caagttggtg ggcgtggttt gtgctgtcat tgacatgatc
      961 taacatcaca tattcaatcg tgaccttgcc gtggttggcg ttagaaactt cacggtattt
     1021 attcaccgaa tccatcaaca ttttgatgtt gtacttttta ttaatcggca ctaattcatc
     1081 acgcagttca tcgttcggag cgtgaagtga aattgccaac gccacatcaa tttgctcacg
     1141 cattttgtct aatgccggca ccacacccga agtggaaagc gtgacacgac gtttagataa
     1201 gccgtaagca aaatcatcta acatgatttc cattgccgga atcacgttat tcatattcag
     1261 caatggttca cccattccca tcatgaccac attggtaatc gggcgaacac cggtcacgcc
     1321 aaaattgccg ataattttag aagcacgcca cacttgcccg ataatttccg ccacgcttaa
     1381 gttacggtta aagccttgtt gagcggttga gcagaaggta caagccaagg cacagcctac
     1441 ttgtgaagaa acacacaggg ttgcacggtc atcttcagga atatataccg tctcgatttg
     1501 ctgatcgccc acttgcattg cccatttaat cgtaccgtct gcagaacgtt gttctaccgc
     1561 cacttcaggg gctttaattt cggcaatacg ctttaatttt tcacgcaata ctttattgat
     1621 attgctcata ttatcgaaat tttcttcgcc aaaatggtag atccatttca ttagctggtc
     1681 ggcacggaaa ggtttttccc ccatttctgc aaacagttct cgcatttctt gacgattaag
     1741 atttaataaa ttgatttttt cttttggttg ttcagcagac ccacagcctg cattggtaat
     1801 cagttctgac ataaagttga aagcctcgtt attacacgga ttacggcaaa aggttagggc
     1861 aaatgccctt attttgcgat tggattttaa agcgtgcaat tttactggct cttgagggat
     1921 taggctagta atttttaatc aaaagagttg aattgcctga gtaaacttat caagaataac
     1981 cttataaaaa caagactatt tacatcattc ccaatgttct atagaatagc tttcgataat
     2041 tctcattctc aataacaaaa ggaggctaaa aatgaaacta tcaacaatta aaaaagcatt
     2101 ggtattaacc tttggtttaa gtgcagcgat ggcaatggca gagccgttta aagtagttac
     2161 cacttttacc gtgattcaag atattgcaca aaatgtcgcc ggcgataaag ccactgtgga
     2221 atccattact aaaccgggtg ctgaaattca cgattatcaa ccaacaccaa aagacattgt
     2281 aaaagctcaa aaggcagact tagtgttatg gaacggtatg aaccttgagc gttggtttga
     2341 acgtttcttt gaaaatgtaa aaggtaaacc ggcggttgtc gtcaccgaag gcatcacccc
     2401 aatgccgatt accgaaggtg aatataaaaa tctaccaaat ccgcacgctt ggatgtccac
     2461 cgataacgca ttaatttaca ttgaaaatat tcgtgcggct ttagtaaaat atgacccaca
     2521 aaacgcagac acctataatg ccaatgcaaa agcctatgct gaaaaagtaa aaggtattgc
     2581 tgagccactc cgccaacgtt tagcttttat tcctgagcag caacgttggt tagtaaccag
     2641 tgaaggggca tttagctatt tagcgaaaga ctacaactta aaagaacttt atttatgggc
     2701 aatcaatgcg gaagagcaag gttcgccaaa acaagtgaaa aaagtgattg atggtgtaaa
     2761 agccaacaaa atccctgttg tgtttagcga aagtaccgtt tccgacaaac cggcaaaaca
     2821 agtggcgaaa gaaaccggtg cattatacgg tggcgtaatt tatgtggatt cactttcaga
     2881 gaaagatggt ccggttccaa cctatttaga tttgcttaaa gtgactatcg gcaccattgt
     2941 cgaagggttc gaacgaagca aaaaataata agatttagca atgacaactg tttcagcctc
     3001 catttccgtc gaaaatttat cggtccgtta taataacgga catatcgctt tgcaagatgt
     3061 ctcgtttcat ctggaaaacg gcacaatttg tgcattaatc ggcgtgaatg gaggtggaaa
     3121 atccactctg tttaaaagtt taatggggct ggttaagcca ttaaccggct ctgttaagct
     3181 gagtcagctc ccgattgcta aagccctcaa acaaaatttg gtttcctatg tgccacaaag
     3241 tgaagaagtg gactggcaat ttccagtttc ggtttacgat gtggtaatga tggggcgata
     3301 cggctatatg aattttctac gccgcccaag ccaaaccgat aagctcaaag tagagcaagc
     3361 aatgcaacgc cttgatgttt tacatctcaa agacaggcaa atcggcgaac tttccggcgg
     3421 gcaaaaaaaa cgggtatttt tagcccgtgc cttagctcaa gaaagtaaaa tcatcttact
     3481 tgatgagcct ttcaccggtg tggatgttaa aaccgaaaat gcgattgttg agctacttaa
     3541 acagcttaaa aatgaggggc atttgatttt agtttccacc cacaaccttg ccagcgtacc
     3601 aagcttttgc gatcaggttt tgatggtcaa tcgcacgcta ctggcaaaag gtaaaacgga
     3661 agaaatcttt aataatcaaa atttagaacg ggtgttcggc ggtttattgc attatcaaaa
     3721 gtagtgtttc agcaacaaat cacaaacaaa tagggaggca aatgcctccc tatttttgta
     3781 tcaatgaatc ttagaatatg caaaactgag gaaaaaaatg gccgcttgca cgagaataat
     3841 cgtcggccct gttgcggcat caatatggta gctaagcaac gtgccgaata ccgatgaaaa
     3901 tatcgcaacg cctaaggcaa tcagtaacat actatcaaac cgcttagtca gcaggtaagc
     3961 agtgatcccc ggggtaatca acattgccac cactaaaatc acgcccacca cttgcattgc
     4021 actgataata gttaaagcaa gcaaggaaag taaaccataa tgcaataatc taaccggtaa
     4081 gcctgctact ttggcttgat taacatcaaa gcaatagagc aagaagtctt tgcgtttcgc
     4141 caccatcacc acaaaggtaa agaggcttat gagtaaagtc tgaagcaaat cgcttttggt
     4201 tacgcctaat agattaccaa ataaaatatg ggttaaatgc tcaccggtat taaaggcggt
     4261 aaacagcaag atcccaaagg caaacatacc tgaaaacaca atccccatta ccgtgtcttc
     4321 tttcaagcga ctattttctt ttaaatagcc caccgataag gcacagccta atcctgaaaa
     4381 aaacgcccct attgagagtg gtaacccggc aagtgaggaa atcaccacac cgggcagaac
     4441 agcgtgcgaa attgcatcgc ccattaaaga ccagcctttc agcaccagat agcaagataa
     4501 aaccgcactc acgccagcaa ctaaaattgc ggtaattaac gcaatttgca taaattcaaa
     4561 ttgcaacggc tctaaaatcc aattaagcat tttgaacctc cacacggtgc aatttccgct
     4621 tttgagtaat caagccatat ttaggagcaa agcagaatgc gaataagaaa attaaggttt
     4681 gtaagcacac aattaccgca ccggttgcac cgtctaaaaa gtagcttaaa tatgccccaa
     4741 tccctgatgt cagcgtgccg ataagcattg cgatcagcac taatctaggg aaacggtcgg
     4801 taagtaaata agcagttgct cccggcgtga cgaccatcgc aataaccaaa attgccccaa
     4861 ccgtttgcag agccactact acacaggcac ttaataaggt aaagaaaatc actttatagc
     4921 gtaatggcga aagcccgact gacaatgcgt ggtgttcgtc aaaaaagacg agtagcaaat
     4981 ccttccaaaa taggattaaa cccagtaacg aaatcgcaat aatcagtacc acctgccaca
     5041 agtcatcatc agcaatgcct aaaatatttc ccattacaat cgaattaaca tcaaccgatg
     5101 ttggattgag ggaaacaata aacataccaa gcgcaaaaaa agtcgtgaaa ataaagccga
     5161 taaccgcatc ttctttaatt ttcgtcaggc tttttaccca aagaatcgat aatgccgcca
     5221 aaatcccgga aaaaaacgca ccaaaggcgt agggcaattt tagtgcataa gcgatggcaa
     5281 cacctggcac tacagcgtgt gataaggcat caccaatcaa agaccagcct tttaacatca
     5341 aaaaggcgga aagaaaagca caaactaacc ccacgcccat actgacaaaa atcgcttttt
     5401 gcatatagtt gtaggtaaaa ggctctaata aaagatcaag cataaaatcc taacaagttg
     5461 ttgataatag ttcgcatata ctatcatata aactcctttt cttgtatgga ttaaacttaa
     5521 atatctactt taaattgata aggatcagga tagtaataac gaaaaccaag ctcttggcaa
     5581 attttgtctg cttttatcag ccttacaagc ggttgatttt cttcagaaaa atgcaaatcc
     5641 gctaacccaa aacgttttgc catttcacta taataatctt tacggcttgg gtgctgttcg
     5701 gcacataaat gaaaaatacg ctgcccgttc ggctgctcca acagcaatga aatggctgca
     5761 atacagtcct ctaaatgcac taaattgacc ggctgccctg ctccactcaa gttctgtttt
     5821 cccgccaaat aaaaaaccgg gtgccgtttt ttgcccacca agccagctaa acgcaaaata
     5881 tcacaatgaa ttggctggct cagcaaccaa ttttccattt ttactaatag gttagcagaa
     5941 tcaaccactg cattttcatc aaaaacgccc gatttcattg gcaaaaccga agtcgagctg
     6001 gtgaaaacca gatgtttcaa gcccttttct attgcaagcg aaactaatgt gtgaataccg
     6061 caaccgtaat tttcagggcg aatttggcta aggggcaagg caatcactaa cgcatcagca
     6121 gcaagtaatt gctcgatttc gcttgtcact gctaacgcat ttaaatctag aggataacat
     6181 tctatcgcta attctccgac cgttcgctta gtacctgcaa cacgccagcc cttattttgt
     6241 aatgcttcag ctaaaggtag tccgagccag ccaagcccta aaatggtaat ttttttcatc
     6301 atttacgttt ctcaagatta aaattggaat gaggggaaat tcaggtacaa aaaaagcacc
     6361 tcgtggtgct atctatttta tttctagatt ggagcgggaa acgaggctcg aactcgcgac
     6421 cccgaccttg gcaaggtcgt gctctaccaa ctgagctatt cccgcaaatt ttaaattgtt
     6481 gattttctaa atggtgcccg aggccagact tgaactggca cgccccgaaa ggcg
//
LOCUS       DANMGB010000139         6349 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.139, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000139 DANMGB010000000
VERSION     DANMGB010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6349
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.139"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..925)
                     /locus_tag="PXG19_002005"
     CDS             complement(<1..925)
                     /locus_tag="PXG19_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL6067273.1"
                     /translation="MFSDNKALHLGKIYHLIEQFELISRTDLAKLSGLAPASVTNLTK
                     ILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIY
                     KQDYTISAENYPRLNDFILNFITNFRQLYCVNTSQLLAVSISVIGKINAEKDSITQLG
                     NKNIFCNITSKLSPLFHCPILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSV
                     LLSGSLLSKQSKMNVDNMLMPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRY
                     LPNNLKSQEQKISWLCQKIDENQPLALAILSH"
     gene            1059..2177
                     /gene="rnd"
                     /locus_tag="PXG19_002006"
     CDS             1059..2177
                     /gene="rnd"
                     /locus_tag="PXG19_002006"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL6067274.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            2234..2716
                     /gene="lrp"
                     /locus_tag="PXG19_002007"
     CDS             2234..2716
                     /gene="lrp"
                     /locus_tag="PXG19_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL6067275.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            2727..5387
                     /locus_tag="PXG19_002008"
     CDS             2727..5387
                     /locus_tag="PXG19_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL6067276.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            5539..>6349
                     /locus_tag="PXG19_002009"
     CDS             5539..>6349
                     /locus_tag="PXG19_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL6067277.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTG"
BASE COUNT         2034 a         1114 c         1381 g         1820 t
ORIGIN      
        1 tatgcgataa aatagctaat gcaagcggtt gattttcatc aattttttga caaagccagc
       61 tgattttctg ttcctgactt tttaaattat taggcaaata acgatcaatg agtctcacaa
      121 tagctgggaa cgtcacctga ttgactaatt tatagcgatg aatttcatct agttcaggga
      181 atatttcatc actgagatgg ctaaatctag gcataagcat attatcaaca ttcatctttg
      241 attgtttaga cagtaaacta ccactaagca atacacttag attcacagta tcatctaatt
      301 gtagaaaaat agcattatct tggttaatta atgagccaac cgtagattct gcaagcaacc
      361 acagctgaaa atgttcactt aataaaatag gacaatgaaa cagcggcgag agtttagatg
      421 taatgttaca gaatatattt ttgtttccca attgagtaat actgtctttt tctgcattaa
      481 ttttaccgat cacactaata gatacagcca ggagctgact agtattaaca caatatagtt
      541 ggcggaaatt tgtaataaag ttaagaataa aatcatttag cctaggataa ttttctgctg
      601 agattgtata atcttgctta taaatttctg caccattgag tttacaaagt gaaatttcaa
      661 ttttatgaga tgaaacagta acacaaagta gttgccaaaa aaaattagaa acagctaatc
      721 caacggaggg gcgacctctg gataaagtag tctgaaccgt acgttctaaa atgaagtggt
      781 tatctattag tattttagtc agatttgtta ctgaagctgg ggctaacccc gatagtttag
      841 ctaaatctgt tcttgaaatg agttcaaatt gctcaattaa atggtatatt ttacccaaat
      901 gaagggcttt gttgtcagaa aacatttaaa atccttatgt tagaattttt agatgacaat
      961 tattttttga tatgaaaaaa ataacaatct ttttttgttt ataatgagag acagatcaca
     1021 taattatttt ttacgtttaa atatttcagg aaaagtatat ggagtctttg attcactacc
     1081 aatgggttga aacaaatgag caattagagg ccgtatgtga acaggccaga aaaacaaaag
     1141 tagttgcctt agatacagag tttatccgta cacgtaccta ttatccgata ttgggtttaa
     1201 ttcaactctt tgatggccaa caggttagcc ttattgatcc aaatacgatt tctgacttct
     1261 cgccttttgt gtcattatta gccgataaaa atatcataaa agtattacat gcctgtagtg
     1321 aggatttaga agtttttgag tatcaattta agcaattgcc agagccgatg ttggatactc
     1381 aggtgatggc agcctttgcc ggcattggta tttcgatggg gtttgcaaaa ttggtttccc
     1441 actacttaaa tattgaacta gacaaaggcg cttcccgaac cgattggctt gccagaccgc
     1501 taagcgctga acaattacaa tatgcggcag ctgatgtttg gtatttattg ccagtttatg
     1561 agaaattggc acaagcatta acaaaaagca cttggcaaag tgctgtagca gaggagtgtg
     1621 tcgctttgtt gaagaaagcg aaacagccta tcaataagga aaaagcctat aaaaatattg
     1681 ccaatgcttg gcgattgaat cgggaagagt tagccatatt acaagtatta gcgaaatggc
     1741 ggattgaaga agcacaaaag cgcaatcttg ccttaaattt tgtcgtgaag gaggcaagtt
     1801 tagttcaaat cgcaaaaagc tgtcctaaac acacttcttc gctgttagaa tttatgcacc
     1861 caaatgaagt cagaattcac ggaaaaaaaa tactatggtt ggttgagcaa ggaaaagcaa
     1921 tagaatcgaa tgattatcct gaactcattc agcgcttggt ggatgaaaag ggttataaat
     1981 attatatgca agcgatgttg caaaaattat tagaaattca accgcttgat atcgtaccgg
     2041 agttggttgc aagtaaacgt caattaaatc agctatttaa atggtatatt gatggaaaac
     2101 catcagaaaa aattcctgaa ttattaatcg gttggcgaaa accttttggt gaacagctgc
     2161 tatcggtttt atcttaaatt tcattcgggt tacatagact atgtacagta taattgccta
     2221 aaaaggagtt tatatggaaa ataaaaaacc accaaaagca ttagatgcga ttgatttaaa
     2281 aatcttaaac gagctacaac gtaacgggaa aatttctaat attgaattat caaagcgagt
     2341 tgggctttct ccaacgccct gcttagaacg ggtaaaacgg ctagaaaaaa ataacgtaat
     2401 tatgggctat aaagctttac ttaaccctga attacttgat gcccctttac tggtgattgt
     2461 tgaaattact ttggtgcgtg gtaagcctga tgtatttgaa gaatttaata aagcgattca
     2521 acaacttgat gaaattcaag aatgccacct ggtatcgggg gattttgatt atctgttaaa
     2581 aacccgtgtg gcggatatgg tatcgtaccg taagttatta ggcacaacat tgcttcgttt
     2641 gcccggcgta aatgacactc gaacctatgt ggtgatggaa gaagtaaaac aaaccaacta
     2701 tttgttgtta aagtaaggag aattgggtga ttgaacaact taaaccacac ctaaaaggca
     2761 aagagaactt gatcaaactt atgcttttgt tgaccggctt tttgggcgtt tatttgctaa
     2821 ttgcttgggc aagttatagt ccattagata atgcttggtc tgttgcaagc agcattacac
     2881 aaacaacctt gaataaaaca ggtcactttg gtgcttggag tattgatatg ctctatgcaa
     2941 tgtttggtaa ggttgcagtt ttagtaccta ttgcattaat tattttctca atttatagct
     3001 tgggaatggg tttaagtgtc gatatgaaat ggaaaactgt cttcattcgc ctagccagtt
     3061 tcttattatt gatggtcggt cttgccgggt tatttagcgt gcttttttca aactcagctt
     3121 attatctgtc gggtggcttt gtcggtggag tttgggagac aatattatct gatactatcg
     3181 gacaatttgg tgccttattg attgcaatgc tttttactat agctggctta tatttttgct
     3241 ctgttcaatc attattgcca atattaacgc aattttatga gtggataatg gcaaaatcag
     3301 aagagagcaa aacagctgaa tctcttcagc atttgcaaaa tactgagcaa aaacaaccgc
     3361 ttgtaactga aaatgaagcg gtggaagttg tagatgacca taaaccgcaa tttaccgata
     3421 tctccgcctt taaacgccca aacattagtg gtttaagaca ctcggaaaat gtagagatag
     3481 ataaccgaga aatgtatgaa attgaaagag atcttgagct accgactatt aatattttaa
     3541 tacagcctga tatggttaac caagttgcgg aacaagctac atcgggctat gagttaccaa
     3601 acgaagaatc caatgtattg caaatgccga ccattcgctt aaataccgct atcgaaaacg
     3661 aggtggatac aatcgaaaac agttcatcat tggaagacct gaaaatagca gaatctatgt
     3721 tacctcaaat tcagcttgat aatgatattg aagatactga agaagctatt gacgatgtgc
     3781 gtgaaattac accggaattt atggtaacgc cgcccaaggc gatgaaagat gtgtctgagc
     3841 agccagccta tccaaaaggc tatggtgata cgttaattca cccgttgtta caacgaaaag
     3901 tgataaccga aaaaccgaca acaccattgc caacgctaga tttgttggat aaagcaccga
     3961 ttcaaagcca gcaaattacc gaacaggaaa tacgagaaac ctctgtgcgg ctagaagcag
     4021 aattagcaaa ctttggcgta aaagctaccg ttgaagatgt attggtcggt ccggtagtga
     4081 cccgttatga aatccaaccg gctgccgggg taaaagcctc caaaattacc aatttagcga
     4141 gcgatatagc tcgtggctta atgtttaaag cgattaggat tactgaagtt atcccaaaca
     4201 aaccttatat gggtattgaa actccgaata aacaccgtga aacagtgtgg ttgcgtgatg
     4261 tgctagacag cgatgaattc cgcaatacca ctgcaacatt gccaatggca ctaggtaaag
     4321 acatcagtgg tgagcctgtg gtggtcgata tggcgaaaat gccacactta ctggtggcag
     4381 ggcagaccgg tgggggtaaa tcggttgggg tgaatacgat gattttaagt ctattgttca
     4441 aacttacacc agaacaagtc cgctttatta tgattgaccc taaagtggtg gagctttcca
     4501 tttataacga tattcctcac ttattaacgc cggtagtaac cgatatgaaa aaagccgcca
     4561 acgcactacg ctgggcggtg gaggaaatgg aacgccgtta tttgctggta agccatttac
     4621 aggtgcgtaa tattgaaggc tataatgcga aaatcgacca agcggcagcg atgaatttgc
     4681 cgattccaga tccaacgtgg cgaccgggcg attcaatgga tagccttccg cctccgctac
     4741 aaaaattaag ctatattgtg ctgattgtcg atgagtttgc ggatttaatg atgtctgccg
     4801 gtaaagaagt ggaagagtac attatgcgaa ttgctcaaaa agcccgagcg gtgggaattc
     4861 acttaattct tgctacccaa cgtccgtcaa ccgatgtgat taccggcgtg attaaagcca
     4921 atattccaag ccggattgcg tttacagtag cgagccaaat tgactcaaga actattttag
     4981 attcaggtgg agcagaggca ttattagggc gaggcgatat gctctattca ggagctggca
     5041 gcccggatat tattcggata cacggtgcgt ttatgaaaga cgaagaagtg caacgcgtgg
     5101 cggataattg gcgggcaaga ggaaaaccaa actacttgga aagcattgtg gaatcccgct
     5161 cggaagaggc tgatggcaaa aacgatggcg gaacgggcga tttagatccg ctatttgacg
     5221 aggttgttga atatatcacg gaaaccggtt cggtctctat cagtaatatt caacgccgct
     5281 tctcgcttgg ttttaaccgt gcggctagaa ttgtggatca aatggaagct caaggcattg
     5341 tttctgagcc acttaaaggt ggcaaacgag aagtgctggc gaggtaaaac acatacaagc
     5401 ggttagattt ctgtgaaatt ttgcaaattt tgacaaaaat ctaaccgatt gtatttatct
     5461 aatgctaaat aagcatagta taaggctagt ctttgggcta aaattaacgc aatttttaca
     5521 tcttttaagg ttgaatatat gcgattagat gatattaaag aaagtaaaaa tgttgaagac
     5581 agaagattca acaatgtggg tagaactaag gttggtagag ggaaaggtgg aatattaacc
     5641 tttattatcg tgcttgttgg agcttattat ggtgttgact taacaggttt aatgggcggt
     5701 ggcgtagaat atgaggagca gacatcagca ttaaatgaaa gtgaagaaaa acagctaaga
     5761 accttatccg ctaaagtatt aacgaccaca gaaaatattt ggacttccta cttccagcaa
     5821 aatggtctaa cttataaaga gccgtctttg gtgctttacc gtggggcaat tcaaactgcc
     5881 tgtggcaccg gtcaatctgc aatgggtcct ttctattgcc ctgtcgatca aaaggtttat
     5941 ttagatttat cattctatga tgatatgcgt aaaaaattaa gagcatcggg cgattttgcc
     6001 ttctcttacg tgattgcaca cgaggttggc caccacgtcc aaaatttatt gggcataaca
     6061 agcaaaaccc aacgggctca aatgaaagcc tcatctaaag ccgaagcaaa ccaaatttca
     6121 gtcaatgtag aattgcaagc tgactgtttt gccggcgttt ggggacacca actcgcaaaa
     6181 gccaaccgat tagaggaagg cgatgtggaa gaagccttta atgctgccca agcagttgga
     6241 gatgaccgat tacagcaaca aagtcgtggc tatgtcgtgc cggatagctt cacccacggc
     6301 tcatctgcac agcgtttggc ttggtttaga aaaggtttaa ccacaggaa
//
LOCUS       DANMGB010000140         6224 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.140, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000140 DANMGB010000000
VERSION     DANMGB010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6224
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.140"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(29..427)
                     /gene="mutT"
                     /locus_tag="PXG19_002010"
     CDS             complement(29..427)
                     /gene="mutT"
                     /locus_tag="PXG19_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL6067278.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
     gene            complement(514..3240)
                     /gene="secA"
                     /locus_tag="PXG19_002011"
     CDS             complement(514..3240)
                     /gene="secA"
                     /locus_tag="PXG19_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL6067279.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            complement(3299..3619)
                     /locus_tag="PXG19_002012"
     CDS             complement(3299..3619)
                     /locus_tag="PXG19_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL6067280.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            3740..4042
                     /locus_tag="PXG19_002013"
     CDS             3740..4042
                     /locus_tag="PXG19_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL6067281.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            4067..4441
                     /locus_tag="PXG19_002014"
     CDS             4067..4441
                     /locus_tag="PXG19_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL6067282.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(4617..4706)
                     /locus_tag="PXG19_002015"
     tRNA            complement(4617..4706)
                     /locus_tag="PXG19_002015"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4670..4672),aa:Ser,seq:gga)
     gene            complement(4798..5109)
                     /locus_tag="PXG19_002016"
     CDS             complement(4798..5109)
                     /locus_tag="PXG19_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6067283.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            5201..5788
                     /locus_tag="PXG19_002017"
     CDS             5201..5788
                     /locus_tag="PXG19_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067284.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            5960..6133
                     /locus_tag="PXG19_002018"
     CDS             5960..6133
                     /locus_tag="PXG19_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067285.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
BASE COUNT         1917 a         1321 c         1140 g         1846 t
ORIGIN      
        1 ttactttaga tacagttctc aatacaaatt atgcgtgttc ttttaagcgt ttaattaatt
       61 gggcatttgc cggtgggaaa gctccctcat ctaaatccga ttgtgcgatc caaaaacctt
      121 cttgcccttc tcttccgtaa ggttcattta cccactcttc caccaaataa aagaaaaatt
      181 caatgatttt tgttggatat tcaaagcaaa aattttcata cggaaaagcg cttaacactt
      241 gaataccaat ttcttcttct aattctcgtt ttagtgcttc ttcaggggtt tcattgggat
      301 cgactttccc cccgggaaat tcaagagact gagcaaaatc ttgcccttct aaacgttggg
      361 ttaagtaaat ttgcccaaat tcgttacgaa taatccctgc tgagacttga ataatcggtt
      421 ttgacatagt ttccttcact ctttctataa attcaagcgg tcatattaag cagaaaattt
      481 gcaaattcct gactgaatat gaccgcttgt taattacgaa tatctcgctt tgttaccatg
      541 gcaatgctta tattttttgc ccgaaccaca agggcaaggg tcatttcgac caatatttaa
      601 gtttgccaac tcttcttcac ttaagctctc tgcgctattt tcttctctac taccagcagc
      661 agaatcggta gcttgtgtaa ctggcgtact tgcagcgtcc atttcagctt gctggcgttg
      721 cgcttcttcc acctcttctt tgctacgcac ttgaatacgg cttaaaatgc taattacatt
      781 caattttaag gtatcaagca tattggtaaa catcgcaaaa gattcctttt tatactcttg
      841 cttcggatct ttttgtgcat aaccacgcaa gtgaatacct ttgcgtaaat aatccattga
      901 ggctagatgc tctttccaaa gctcatctaa gttttgtagc attacacctt tttcaaaatt
      961 acgcattacc tctgcgccta ctatttcttc cttcgcattg tactctgcaa tcgcaatatt
     1021 taagatacgt tcacgcaaag tctcttcgtg caagtctttt tcagtttcaa gccagtgaga
     1081 aatcggtaaa tccaacccaa attcacggcg taaacgctct tctaagcccg gcacattcca
     1141 catttcctcg atagattgag gcggaatata ttggttaatc gtgctttcaa atacatcttg
     1201 gcgaatgctt tcgatcattg aggcaatatt atctgtttct aatagatgat tgcgttgttc
     1261 gtaaattact ttacgctgtt cattggcaac atcatcatat tgtaataaat gcttacgccc
     1321 atcaaagtta tgcgcttcta ctttcgcctg tgcagaggca atcactttgg ttaacagttt
     1381 agactccatc gcttcacctt cttcggtaaa ggctttacgc atcatattta atttaccttc
     1441 attgaggtaa attctcatta gggcatcatc taaagagaga tagaaacgtg atgaccccgg
     1501 gtcaccttga cgaccagaac gacctcgcaa ctggttgtcg atacggcggg attcgtggcg
     1561 ttctgtacca ataatatgta aaccaccggc ttgcattacg atgtcataac gctcttgcca
     1621 cgcagcttta atcgcatcaa tttgttcttg tgtcgggttc tcaagcttgg ctacttccat
     1681 tttccagtta ccgccaagca caatatccgt accacgacca gccatattgg ttgcgatagt
     1741 aaccgccccc ggagctcccg cttccgctac aatttcagcc tcttgagcgt ggaatttcgc
     1801 atttaatacg ttatgagcaa taccggcttt ggttaattct gccgataata actctgattt
     1861 ttccaccgat gctgtgccaa ccaaaacagg ctgtttacgc tcgatacagt ctctaatttc
     1921 agtaataatc gccgcaaatt tctccgcttc gcttttaaac attaagtctg tacggtcatc
     1981 acggatcacc ggtctgttgg ttggaatcac caccgtattt aagccataaa tttgctggaa
     2041 ttcaaaggct tcggtgtctg ccgtaccagt cataccggct aatttttcgt acaaacggaa
     2101 atagttttgg taagtaattg aggcaacagt ttggttttcg ccctgaatag ccacacgctc
     2161 tttagcttca atcgcttggt gtaagccgtc agaccaacga cgtccagcca ttgtacgacc
     2221 ggtgtgctca tcaataatca caatttcacc gtcttttaca atgtaatcta cgttgcgttc
     2281 aaataattta tgggcacgca atgctgcact cacatggtgt aacagcgaaa tacgagcagg
     2341 gtgatataaa ctttcgccct cttccattaa ccccatttga gttaagaaat cctctacttt
     2401 caccatacca cgctcggtta aatgagcctg tttgtttttc agatctaagg taaaatcgcc
     2461 ctcaccggtg tactcttcac tgtcttcttt atcttgagca atcaaatgcg gaatgatttg
     2521 atctaccgct tgataaattt gggtcgcatc ttccgcaggc cctgaaataa ttaacggcgt
     2581 acgagcttca tcaattaaaa tagagtctac ttcatcaact aatgcgtagt gtaactcacg
     2641 ttggaaacgt tcgtttttat cgtgagctaa gttatcacgc aagtaatcaa aacctaattc
     2701 gctgttagtc gaataggtaa tatctgcttg gtatgcagca cgttttgcat cggaaggtaa
     2761 ccccggaata ttcactccaa cggttaagcc taaaaactca aataacggac ggttggtttc
     2821 cgcatcacgg cgggcgaggt aatcattcac cgtaacaaca tgaacacctt taccggtcaa
     2881 agcattcaaa taacaagata aagttgcagt tagggtttta ccttccccag tacgcatttc
     2941 tgcaatatta cgccccgtta gcaccatacc gccgatcagc tgtacatcaa atggtcgcat
     3001 acctaatact cgtttgcttg cttctctcac tgtcgcaaaa gcttcaggta ataggctatc
     3061 tagcgataca ccatctgcaa ggcgttgctt aaactccgct gttttatcct ttaacgcctc
     3121 atcagataat tgctcgaagg ttggttcaag cttattaatt tgtgccactc gctttcttaa
     3181 acgttttaaa gtgcgatcgt tgcttgagcc aaaaatagaa gtcagtaatt ttgaaatcat
     3241 tgtgttattc ctaaatataa aaatgggtta atcaattaat ggtaaaatta aattatattt
     3301 aggtttgtgg cccggctcga atggggtaag cattttgtct atccaagcgg taggagtttg
     3361 caaaaaattc gcaaaaatgc accgcttgtg gtttaatttc cacaatttta tggattaact
     3421 ctgcaataaa aagcgattgt tgctcaatat cattagcgga ttgagcatat tgaagaaaag
     3481 attgattaag aacggtttcc tgttcacttt cattggcgta cgcaacctga atttcaggta
     3541 aagcaagtat cgcaaccatt cccaaaaaga gttgcgacca aaaaggcgtt cgatgaaagt
     3601 gttttaaaaa taagctcatt aaattaagat aaatgaaaaa attgggctaa ttatacgcta
     3661 aagtaaagcc gaatgagtaa attattgggt caagtatcgt aaaatcaagc ctaaaataag
     3721 acgaaatgta aagaaacaga tgaaaaattc agcacctaaa aagattaatg acattttaca
     3781 gaactcaagc ttaagccgta ttgtcgaaaa agcaaacttc attaacgatt taaaccaaaa
     3841 aattcagaaa agatggccag aatcttatcg tgggctttac cgagtagtga atttagttga
     3901 taatcagctt attgtgagcg ttaagaatgc aaccgtacgg caaggtttaa tcttgcaaca
     3961 aaatatgtta ctaaaacaga tacaaaccga tttacctgaa ataacccaac ttgaatttag
     4021 agtaaatccg agtgttacat aatttaattt tgaagaggaa aatagtatga aaaaaatcgc
     4081 actcattggt tttaccaccg caatgctagg ggcttgctca ttgctaccac aaaaaagcgt
     4141 tagcggtact tatgcaggtg aattaccgtg tgctgactgt gagaaaatcc aagcccagct
     4201 aaccttaaat gcagataaaa cctaccaata tgatacggta tattttaaag ataaaaaaga
     4261 atacacttac cgagacaaag gcacatacag ttgggaaccc aataagccaa atgtgattcg
     4321 tctggaaaaa gcatcaggca atcttgcctt ccaagtgtct gaacaacacg ttgaactttg
     4381 cgacccaaat ggcaacacgg taaaaaacag caataactat aaactaggta aagtacgtta
     4441 aaagcagata aaaaggattc ttaggaatcc tttttctttg taatctatcg ccgatcgcat
     4501 aaaaaaaccc ccaagcaatg tttgctcggg gataacctaa aaatgaaaaa gtattatcta
     4561 ctttaactta accaaggaaa tatctatgaa aacagtaagg aatctttcag tatgaatggc
     4621 ggtgagaggg ggattcgaac ccccgataca gtttcccata tacacgcttt ccaggcgtgc
     4681 tccttcaacc actcggacat ctcaccgaat caacaaaaag atggcgtaaa tatagcaatt
     4741 ttacacggct ctttcaagta ttttcttcac aaaataaaat aaatcatttt tatccactta
     4801 ttgcccaaca cctaagcaat ttagcgattt aggtacaagt ccgccagtcg cttcccattc
     4861 accttgggta tataggtgca aagcaagtgc gtgaacgcca ttagctaatt cctcagctaa
     4921 gcaagcatag acagcacgat gacgtgcaac tgttctctgc ccttcaaatt tatctgacac
     4981 caaagttaat ttaaaatgcg attctgctcc tctacctgag ctgtgcatat agctttcgtt
     5041 ttcgacatta aagaaaatcg gctgaaattc tgtcttaatt ttttgaataa ttgtctgttc
     5101 taccgacatt ttttgctctc gttcattgaa aatcaaaacg aaataatact atactaagca
     5161 gaaattttct cgaaatttat tcaatataga aggatttact atgaaacgct ctaaaaaaac
     5221 gttagtgtta gccactactt ttgttgccgc attactagcc ggctgccaaa gccaatccaa
     5281 cacattaaca ttctctaccc caacgccaac tgctgtattt aacacaaaca atcaaacggc
     5341 tgcggtgaat gtaatgacac aagatttacg cacctcgcgt gaaatcgcaa gctacactaa
     5401 aaacggagag gtcattcgtt taaccgcagt gcctgaagtt gctgcaatgt tccaacaagc
     5461 cgtccaacaa gacctgaatg caaaaggttt ccaaattgta caaggtgcag cgaatgccaa
     5521 tgtggtagtg aatattcgta aattctttgc cacagtagaa caaggaaact tacgctacaa
     5581 agccgatgca caagtgagtg taaaagtggc agtgcaaggt tctaaaggaa actttagcaa
     5641 aaacttcaac gctacccgtg gttacgaagg tgcatttggt gcaagcaatg atgaaatcaa
     5701 gaaagtgtta gaccaagcct attctgatgt ggtgaaagct atttacaacg ataatgaaat
     5761 cgccaatgca attcaccagt tcaaataatt aattttttct ggcaagcggt catctttctt
     5821 cgattttttg caaaaaacgt ggaaaaatga ccgcttgttg ttttctcgtt ttgtgatgtg
     5881 gctcgaaaaa taagataaat taacttgatt aaacgatcag tagcccccac aatagagact
     5941 catcgcaggg aggaaaaata tgaataatcc ttatcataat gttagccaag aatatcttga
     6001 ttatcttgct aaaaaagtaa agcaaggaaa ggaagatatt aaaaacggtc ggatttattc
     6061 acccgaagag gtcagaaaaa gagttattgc tgccgctttt agaggtgctg aaaatgccaa
     6121 aaaagttgca taatatttat tatactgaag aggccttaat agatttagag aatattgcca
     6181 tctcagttag tgaatttacc ggttatgcaa gtagtggaat tagg
//
LOCUS       DANMGB010000141         6132 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.141, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000141 DANMGB010000000
VERSION     DANMGB010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6132
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.141"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            12..224
                     /locus_tag="PXG19_002019"
     CDS             12..224
                     /locus_tag="PXG19_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067286.1"
                     /translation="MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYL
                     LKIEAATNGQVTIREICEELGNATAK"
     gene            complement(323..568)
                     /locus_tag="PXG19_002020"
     CDS             complement(323..568)
                     /locus_tag="PXG19_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067287.1"
                     /translation="MNTEDQIIELTVEVENLRHQLNAKNIILDDLKGRLTDYQRKRLD
                     RLFERSRRQYLNDLDLEEEQAEALEAICNELESFLAN"
     gene            701..973
                     /locus_tag="PXG19_002021"
     CDS             701..973
                     /locus_tag="PXG19_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067288.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            1056..1388
                     /locus_tag="PXG19_002022"
     CDS             1056..1388
                     /locus_tag="PXG19_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067289.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            1401..1694
                     /locus_tag="PXG19_002023"
     CDS             1401..1694
                     /locus_tag="PXG19_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067290.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            1846..2088
                     /locus_tag="PXG19_002024"
     CDS             1846..2088
                     /locus_tag="PXG19_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067291.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            2085..2417
                     /locus_tag="PXG19_002025"
     CDS             2085..2417
                     /locus_tag="PXG19_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067292.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            2414..4774
                     /locus_tag="PXG19_002026"
     CDS             2414..4774
                     /locus_tag="PXG19_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL6067293.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            4787..5119
                     /locus_tag="PXG19_002027"
     CDS             4787..5119
                     /locus_tag="PXG19_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067294.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            5119..5571
                     /gene="ssb"
                     /locus_tag="PXG19_002028"
     CDS             5119..5571
                     /gene="ssb"
                     /locus_tag="PXG19_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6067295.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            5582..5914
                     /locus_tag="PXG19_002029"
     CDS             5582..5914
                     /locus_tag="PXG19_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067296.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            5904..>6132
                     /locus_tag="PXG19_002030"
     CDS             5904..>6132
                     /locus_tag="PXG19_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067297.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWID"
BASE COUNT         2016 a         1027 c         1460 g         1629 t
ORIGIN      
        1 gagttatatt tatgactaat aagaaaattc agaaagctat tgaacttgta ggaacacaaa
       61 caaaattagc tgaagcttgt ggagttagtc agcctacggt cttgaaatgg ctaaacggag
      121 gcggaatttc cgctgaatat ctactaaaaa tcgaagctgc cacaaacggg caggtaacaa
      181 ttcgtgaaat ttgtgaggag ttgggaaatg caacagcaaa ataaaagccc tgaacaggca
      241 gggctagcga gtgggaaatt tactgtaaga cgtaatcaag acggtaaatg gcgtttagat
      301 ttgaccttgt tggattttgg tattagttcg ccagaaacga ctcaagctcg ttgcaaattg
      361 cttcaagagc ttcagcttgc tcttcttcaa ggtcaaggtc atttaaatac tgtcggcgtg
      421 aacgttcgaa aagccggtcc agtcgtttgc gttggtagtc tgttaagcga ccttttaaat
      481 catcaagaat aatgtttttg gcgtttagtt gatggcgtaa gttttcaact tcaacagtca
      541 gttcaataat ttgatcttca gtattcataa aatttccttt tggagggtta aacaatatct
      601 aaaacataac caaaattcga ctgcttgtct atggggatag ataagccgaa atcaacgtaa
      661 agaatgttaa tagagccttg gggaaggcgt aggggaaata atgaatttag accacacctg
      721 tacaaattgc aaaagtaaaa atttacgggt tcgtacatct gaaaaaatcg gtttgctgac
      781 tattcaggct gttacttatt gtaataactg cggcacagag caacttgtgc aaagtcaaat
      841 tatccgtgtt cgcacaccga tttataaaga gcgaccggaa gcaatgcgta ttaataaatg
      901 cttgatggaa gccgatttga acacgccgga tttgttcgat ggcgttgtgg cagaccaacc
      961 taagcaagac taatcccaat ttttaaacaa tcgtcaaaat aagccttatt tgcatagggc
     1021 gagatttttg caccctaaat tcaggaattt gaacaatgag taagcaatta tattaccgac
     1081 acaaatcacg ttggaacaga cttaaccgcc ttaagaagat gaataaacgt cgccttaatc
     1141 tgtttttgca agaaaagcgg gtggcgaatt tagaaagccg gttagctgat gaagtagagc
     1201 tggcaaagct gaatagtgag cagattggcg atttactgca agcgttggag ttaaaagtga
     1261 atcggttaat tcgccaaaat gaaaagctga aagcccgtgt gattaagctg gaaaaagtca
     1321 aacagaccca aaagcaaggt ttgtttgcaa tgtttaaaaa ggtgttgggt agcaagggta
     1381 atccttagta agaggtagat atggatttcg tggcaacgta tcaaaagata cgcattaaca
     1441 ctaatcacaa gcaatttact tgcaatcact taggcgagat ttgggggaag gaaaacgacg
     1501 attttaaacg tttcttacta cgagtcgcat tcttgcagga taaccccgag ccgaaacctt
     1561 ggggagcgta ttccccacaa gaaaaacgcc ttttacatag ttttagcttg tggttagagc
     1621 agatagcaga ttttcagcga gtaatgaaaa gagaatcaaa actgcgtgaa aaacatatta
     1681 acgcaccgga ttagaaggag taaatatgag ccgtaaccgt gaattgtgtg agttttttca
     1741 caaactgtgg tgcaaaaccg gtaatcgcta tgcttatcgc cggtatcaag tgttttttca
     1801 gcgttatcaa aacgaatgtt tagtgaatga gtagagggta gaaaaatgtc attaattact
     1861 gtgaacgatt acaaaatcaa gaaagatatt ttagatgcag acggcaagcc gtgttatcag
     1921 ttgtatcaag gcgaagagct attgcgtgat accaccaatt taagcgaaat catcgcttat
     1981 atgtttattc gtgccgaaga taaaccgttt gatgagttgt ataaccatat catcaaccaa
     2041 gaagcaggag ctaaaacaga tattaaattt acggtaacgg tgagatgagc cagattacta
     2101 aatccgctta cacacatatt cacccaaact ggcaagcccc gagaggtaac acttaccgga
     2161 ttgagcgata tgagctaaaa cggcggtatg ccttattttg taatggtgag agggtagttt
     2221 tatataaaga cccaacacac cccaataaga acgtagagag ccatatagaa agtgatgttt
     2281 tgttgttatg gctactgaaa aatgaattag ggtggagcgg taatattaaa gagccgttaa
     2341 gccctcaaga tgttgagaat atccgcttgt tagagcaagc attttgttta acttataacg
     2401 gaactttcat taaatgaatt atcagaatga gattctatct gctacagagg ctttcgcaat
     2461 aggtgtttca ctcccacctg ttgccggtgc ttctgcttgt gcattagagc ttcattctga
     2521 tcgtttatat caagcgttca aacagcctta cacttcaatg gtccagcaag aattattctc
     2581 gaaagaccct attcacgaac cgttacgcca atcttatttt gagcgtttgc ctcgtgcctt
     2641 agcagagcat ttcggcagac agtataagca aaagctacat taccaaagcc aatacgacac
     2701 agcagactgg ttcaaagcgg aaatggcacg caaaatgcca cgcattgagg cagttattag
     2761 ccagtattgc gatgtattcg attttctgaa gcaatcccat caagatttag attttttagc
     2821 tgaattagat agtaatgttt atttcggtgc cggtgttgat acgcaacaag cggtacaaaa
     2881 aattaaacaa gatgccgaag tgaaaggtat tcaactgcct atgcaccttt gccgtttaga
     2941 gaatagctct cgctatttaa aagctcacgg cattcgcccg cttgcttacc aaaccgaaga
     3001 gcaaatcaaa cagcttgcct taggtattgc ttatcgtgtt cgccaaattc agcaagataa
     3061 catcgagcag aatatgcaca aagcgacaga tggcgacaca gcctatagtg tgttgcttga
     3121 atgctatcgg gcaatgatgg gagaggtaaa taagctcaag attgattcgc cttatcagaa
     3181 aaaagcgaga aagggtagat taactgaaga ggaaattacc acaggctttt taaaaatgac
     3241 ctgtgaaaaa tggtggacta gaaagttatc taaaattgcc gaacagatga aagagcattt
     3301 agctattgcg tgcggtatgg tgaatatgct ttcgccttac tgttcaaatg ctcgcttgaa
     3361 agcgtttgag gctcaacgca aggcgaatat tgattatttg aaatcaatga tcattgccaa
     3421 tatcgccgag ccggaagagc aactttcatt atttgaaacg tggttgaagt ctgcctctaa
     3481 cccgaaaatt aaacgccttg aattactcac tcgtatgaat ggatttgagc gttatgcaga
     3541 taagcaaggg cacgaggggt ggtttattac cttgactgct ccgtctaagt atcacgcaat
     3601 gctttcaaga accagtagcg tgaacccgaa atggaatgga gcaagccctg cggaaacaca
     3661 ggtttacctt gtgaatactt gggcgaaaat ccgtgccaaa ctcaaccgtg agggcgtaat
     3721 ggcttacggt tttcgagtgg ctgaacctca cgctgacgct accccacact ggcatttaat
     3781 tctattcact cgtccggaag atatggaaaa gcttcgccgc gtgttcttga gttatgcctt
     3841 agaggtcgat ggcacagaag ccggtgcgaa aaaataccgt tgcaaattca agcgtattga
     3901 gaaagagaaa ggctcggcaa cgggctattt agtgaaatat gtttctaaaa acattgacgg
     3961 ttttggaatg gacggcgagc tttcagacga ggcaaatatt caggcgaaag agaatgccgc
     4021 tcgtgtagga gcgtggtcta gcgtttggtg tattcgacag ttccagcagt taggtaatat
     4081 tccgatcagc ttatggcgtg agttacgccg tttggggagt gtagagcaag aagatgaaac
     4141 tttagagaaa ctccgtgtga ttgcagatag cggtgagtgg gacgttttca ccgaagaatt
     4201 aggcggtgcg ttggttaaac gtgccgattt agttgcacgt attacttata ccgaacgcaa
     4261 aagcgaaacc ggtgaggcgt tatatacgat gtatcaagag ccatcattaa aagtgagcgg
     4321 cattattaac attaaaaacg gtgtgcagat taatacacgc ccgaaagagt ggagcattca
     4381 acttaaacct aaaaactggg aggagcaaca attacagaaa aaattagaaa atgcaaccga
     4441 aacggaacga gcggaggtta aacgtaaata ctacgagaag ttagggttta acgaagaggc
     4501 tatcgcttta ttaggggagc ttgctccccc ttggacttgt gtcagtaact gtacggggtc
     4561 aaaaaataat cagattagtg aagaggctcg aaattgccta agaaatgaac tgattacaat
     4621 gcgaggacgg gttactgaac atcaaataga cgatttacta aacggcaagc ggttaaaaat
     4681 ttggggaaat tcgcaaaaaa caatgtttgt gagttatagc cgtgggcgtt taattgagca
     4741 tattgttgat aattatgaga gttttttgaa ttaggatatt aagaaaatgg ttaaatttat
     4801 tcgtttaaat ttgattaatt atttcattga gaaagatgaa tatggagaac cggtgcgttg
     4861 cagagcgttt cgttatgatg agattattca aactaagttt attgaaggat ttcgagaggg
     4921 agagatacca gctgatgatt atggatttga agattggaat ggttcggttc tgattttaaa
     4981 tgaagaagga cgtaaatatt ttgagaacta tctttttgat gtaaagaaga attattgtag
     5041 agcaagggat aactatgtat atgtcttgga aactttagac gaaattgaaa tgaagttagg
     5101 attattggag gcgaaataat gaacttagtc acattagtcg gacgtttggg gcaagaccct
     5161 gatattagaa caatgcaaaa tggtgagaaa gctgcggctt tatcggtagc gacctctgaa
     5221 aagtggacag ataagcaaac aggtgtgaag aaagaaagca ccgaatggca tagggtggtg
     5281 ctttatcgcc gattagctga aatcgccgaa ttgtatgtaa aaaaagggca tttggtatca
     5341 attatcggga aaattaaaac ccgaaaatgg acggatagca acggtgttga gcggagtatt
     5401 acagagatta ttgccgagca gatgcaaatg ctcagtagtg gtgagaaaaa tacgccaaat
     5461 acgccaaata aggcagaaaa taaaccgcaa ccaaagcaga aaaatcaaga cgtgatgact
     5521 gcggacgagc agaaagatat tccgcagttt gatgatgata ttccgtttta gggggtgaat
     5581 aatgagagaa tgggaaaaac aaatgccatt tagtgcaaat ttacatataa gacctacagg
     5641 aaaatttgaa gtgaaaaatg taaacataga acaaataatc ggagaacgtg gcaaaaatta
     5701 cggcaacttt gatgatgttg ccacaatgag ccagcagtta aaagcagtgt tgctggatac
     5761 caatactcaa cttaaaccac atcaaaaaga ggcaggcgag atgatctgct tgaaactggc
     5821 tcgcattttt gcaggttgta atccggacta tgaagataac tggcgagata ttgcgggtta
     5881 tgcggtgctg ggagggaaat taaatgaaaa ataaaatggg gagtaaattt atacgagtca
     5941 gagttgagca tccacagcgg aaaaaagaag atattgagct tgtgcaggat gtggttgctt
     6001 atcatatttt taatcttttt aaatttgagg aaagtgggtt acgggggttt agtcagtatg
     6061 atttggaaat tgatgtgaaa gttaagccag tgttagaaca aaaagaaatg cctgtagatg
     6121 tttggattga tg
//
LOCUS       DANMGB010000142         6130 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.142, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000142 DANMGB010000000
VERSION     DANMGB010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6130
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.142"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            127..1116
                     /gene="dusB"
                     /locus_tag="PXG19_002031"
     CDS             127..1116
                     /gene="dusB"
                     /locus_tag="PXG19_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL6067298.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            1121..1417
                     /gene="fis"
                     /locus_tag="PXG19_002032"
     CDS             1121..1417
                     /gene="fis"
                     /locus_tag="PXG19_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL6067299.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(1522..4308)
                     /locus_tag="PXG19_002033"
     CDS             complement(1522..4308)
                     /locus_tag="PXG19_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL6067300.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRNHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(4402..>6130)
                     /locus_tag="PXG19_002034"
     CDS             complement(4402..>6130)
                     /locus_tag="PXG19_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6067301.1"
                     /translation="VLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKPSLQDDNSN
                     ARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDLTKIPYEEE
                     VKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILRTGAHGYVY
                     YLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPENSYDINVDD
                     SEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKGNRFSGKAN
                     AKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAKKDDSESAF
                     DAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLVTRTIDDKT
                     YRVSVCCNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRGTWDGVMYS
                     KSGSAGAESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEGNLKGNGFA
                     GTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAETDKDRVSIT
                     FGGKRQIEK"
BASE COUNT         1861 a         1282 c         1087 g         1900 t
ORIGIN      
        1 ccagccctca aatcagtact aaactgatcc ataagctatt ataagaaagt acggtattta
       61 ccgtactttt tatttggata tccctctggt taaaattact tcaaatttgt taataaaagg
      121 ttaaaaatgc aaataggaca atatgcaatc aaaaatcgta ttttccttgc acctatggct
      181 ggaatcacag atcagccttt tcgccgctta tgtagccaac ttggagcagg tttaacattt
      241 tcagagatga tgtctaccaa tcctgatgta tggcatactg agaaatcacg attgcggtta
      301 gcacaccacg atgaaatagg cttaaatgcc gtacaaattg caggttctga tcctgttgaa
      361 atggcaaagg ctgcaaagat aaatgttgag tatggtgccg atattattga tattaatatg
      421 ggttgcccgg caaaaaaggt gaataaaaat atggcaggct ctgctctttt acgtaacccc
      481 aaattagtcg ctcaaatatt agattctgta gtcaatgccg ttgatgtccc tgtgacacta
      541 aaaattagaa caggttggga tcaggaaaat agaaattgtc tgcaaattgc gaaaattgca
      601 gaacaagccg gcataaaagc tctcactatt cacgggcgta ctcgaagctg tttatttaat
      661 ggcgaagctg aatatgaaag tattaaggca gtaaaagaag caatttctat cccagtgata
      721 gcaaacggag acattgactc tgcggaaaaa gcaaagtttg ttctcgacta taccaaagcc
      781 gatgcaatca tgattgggcg cgctagcttt ggaaatcctt ggatatttaa ggaaattaat
      841 gatttttttg aaactggatt atcttcacca ttatcaattg ataaaaaata ccaattaatg
      901 tttaaacata ttgaggattt gcaccaattt tatggtgaag aaaaaggtta tcgtattgca
      961 cgaaaacatg ttggttggta taccgaaaaa ttaaatccgg aatcaaattt taaacgcact
     1021 tttaatacac taagttccac aaaagagcaa ctttatgcat tagaagattt tgttaaatcg
     1081 attcatttag aatctcaatt aagaaaagtt ggataaaaaa atgttagagc aacaacctac
     1141 acaaaaccca ttaacagtaa caatgttaaa tgcacaagcg cagcaggtta ataaaccact
     1201 tcgcgataat gtgaaagcag cattaaaaaa ctatttatct caattaaatg gtgaagatcc
     1261 aacagaatta tacgaattag tattatctga aatcgaacac ccaatgttag atatggtgat
     1321 gcaatatact cgcggcaatc aaactcgtgc agcaacaatg ctaggcatta accgtggcac
     1381 attacgcaaa aaattaaaaa aatacggtat gggttaatct aaccgaccgt taaaacacga
     1441 ttttaattcg tatgtaatta gttagagcca acaaaaaacg ctgaatatac tattcagcgt
     1501 ttttctattt tattttgccg tctaaaactt catttcaaat gctaaactga aatttctccc
     1561 cggagcggca aatcgagtgt aattgctacc ccggtcttgg tttactgcat tcacaccgga
     1621 ttggcgcact gattcccaag tggaatattt acgattagtc acattataaa ttcctccacg
     1681 taaggtgtag tttttataat tgatgtaacc ggtaatatca tgggtgtacc aagaaccggt
     1741 cagtttgcca cctaaatcaa cgcgatgtat gccgtgatga cgtgtgcctg ccacctcatc
     1801 ggcgtttttg gctttagaat aggtggtagt aatgccaatt ccccattttt cttctgggtg
     1861 atcgtagccg aatccaagca catagcgtgc tggctgaatc gcatctagaa taggatcgtt
     1921 tacgctatcg agtcttgagt cggttagttt ccgctctttt acttttacac ggttataagc
     1981 aactgatgaa taaaaaccat ctggcagcat agataaaata ccgtgtaagt caaatttagc
     2041 gactaaattt atcccgttta gtgctacatc ttgaatatta tggtagttat agaaacagtg
     2101 tgatttttgt attattcttt tacatgctgt cgcaatcata tttttatagt tattacggaa
     2161 atagctcaca tcaaggtaac caaattgacc tttaaagcta actccaatct catgattagt
     2221 cgatttttct ggctctaact ggtggctacg ttgcgcgcgt tgcacatatt cgttatcttt
     2281 aagcccaata tgattacgtt taccataaag ttcatagaat gcaggcactc taaaaccgtt
     2341 tgaaatgcga taagaaagcg atacaaactc tgttggttta agcgtaatcc caccattcca
     2401 agaccaattt cgataagttc ggctaagtgt ccacggatca tcagatttaa atcgatgttg
     2461 atcaaaacgc acccctaatc ccaaatccac atactcgctt atcactagat cgcggaagct
     2521 aacaaaatgg ctatcgcctt taattttacg cggttcacag tttaagatgt cgccgcgtgt
     2581 attattacac aaagataccg tttcaatact gcgtggatcg cggcgataaa tatatggatt
     2641 atctaaacgc cctctaccgc ggtagctggt ataaccgcct ttggtatatt gggcagtcat
     2701 atccccatga tccataagcg aattaaatcg atcaaagccc aaccctaaat tcagtttgtg
     2761 ggtttgctta aatacgcctt gaccagcatt tagcgcttta tcaaattcta aatgaatgac
     2821 acgatgcttt tcttggtaat tattacgctc agttcgatac atagaccaag atttatccaa
     2881 agtcgggcgg caatttttat ctaccacagg ataatcgcta caatgcaagc gatgtagccg
     2941 gctatatagt tcaatatctt gtttatccgc actgagttta atgctatcca accagcgatt
     3001 attctctggt ttatatttat aggtgaatcc taaacgacgt ttgtggtgac gttcatcaaa
     3061 aaacttcaca tggctatagc gcaacccata agggatcctt ggcttgaaca ctaagccatc
     3121 taaaatatta tccccttcat aaacatagtt cctaagtgat aagttaatat cgtcttttgt
     3181 atagtaagct ggcgtttgca tatcacggat atcgtagcgt tgttttgtat cttctaagat
     3241 tgcgccaaga taatgagacg agttaaagtg atagccaaac ttcataaaaa cagaattact
     3301 cttgtaatct aaagggtttg gtgcaatgcg atctttaccg gtatattctt gggctgagag
     3361 ctgctcagtg cgataaggaa tctgctcaag ctgtttgcgc tcttcaggcg tatattccgg
     3421 aaatgttctc actgggaaat tatcgcggtt caacttaacc cttgcacgag gagtacaatc
     3481 taatgttggg caagtatctt ccacaataaa aaaagatcct ccaggagcat tctgtgcgga
     3541 atttgggtaa agatcgtagc gattttcaaa gccggttata cgccgaatat tatgttttaa
     3601 tttatttgcc tcggaatgaa ttttggtctc tttaccgtgt cggtgagttg caataacaag
     3661 tgcttcaaaa ccacccgcct caccagccgc tgcgatagac tgtaaaaaat ggctattttt
     3721 gctggcataa gaggtcttac tatctaagcc ccaatgctgc ccctctttaa taatatcctg
     3781 cgcatcttta gtacgaaaac caatagcacc acctagcgca ccagagccat attccgcaga
     3841 acttgctcct ttgcttaact caattgaacg aatgttttca tactcaatct cattaattgc
     3901 accaccatta gcatctgaac ctagcgtatg ataatgctgc gcttgtggta gcccatcaac
     3961 aagtaagctg acacggtttt tatctacacc tcgaatggca tagccactac ttgcaccgcg
     4021 accttgttcc accaccgaaa taccagggtc atagcgagtt aaatcacgaa taccaagaat
     4081 ttgattttta ctcatttcgt gataattttt cactactttc cccaagccag ttacttcgtt
     4141 ttgacgttcg tgagcataat ggctctctgt cacaataact tcatccagaa cagctagatc
     4201 gttattttct tctatttttt tattttcagt cgcagcaccg tatgaatgag aaagagcaaa
     4261 taacactgtt aaggcaacag gtgaatagcg aaaatgatga tatttcatta tcattagata
     4321 gggtctcctt tatttaaatt ttgcaaattt ttataaaaaa ttgcccgctt gctatctaca
     4381 accagcaaag gggaattatg attatttttc tatttgacgt tttccgccga atgtaatact
     4441 gactctatct ttatccgttt ctgcactatg tacaatacca cctaattccg tcgccttagg
     4501 gccataaaag cccccttcaa attgagtatt tatatgcact accgtgccac cattcgtact
     4561 tttcggatca agattaaaac cagaattgcc cgttttggct gtgcctgcaa aaccattccc
     4621 tttcagattg ccttcaagtg tcagcattgg gcgttcttca acaccatcat tagcaatcag
     4681 cttgccatta atttttttat tgacaaaatc tacatcgaat agtgaacgag taccactttc
     4741 gctgttactt ggcgattcag cccctgccga gccagattta ctgtacatta ccccgtccca
     4801 agtacctcga tattttactg tccctgttgg caaatctgcc acagctgtac gttctcctac
     4861 taaatattgg tgagcagtat cactattatt tccctcgcta taagtcccaa atttgacata
     4921 atctaaatta ttacagcaga ctgaaactcg atacgtttta tcatcaatag tacgggtaac
     4981 caaatcatca aatttcatct cggcaaagct ttttttgcct tccgcaataa gtggaatctg
     5041 cttattgtta ataatcaaat gtgtcgcatt cccgaaagta tccatctcag atttatttaa
     5101 atctttaagt ttaattttga aagcatcaaa ggcagattca ctatcatctt ttttagcatc
     5161 tcgtttgcca gcaaaaacaa caaataccga cttatcatca gctaagaatt taccggcaag
     5221 ttcttgagcc ttcccaccaa aaaatccacc ttcaagtgtc gtagagcttt taccaaaata
     5281 aggatcatcg gtattttttg cgtttgcttt accagaaaag cgattacctt taatttttgc
     5341 atcaatatcg taaattgttg taattttttg ctctttgcta cgactaacat acccattacg
     5401 aaccaatgtt ccagttaaag ttttattagc aaaatcagcc gtaaattctc ctgtatgccc
     5461 cattggtttt tcagaatcat caacattaat atcgtaacta ttttccggtg tggcgccaat
     5521 attgatgcct gcggaattag aaaaatattt actatctctc ccttttctcg catcggtagt
     5581 aaaatcccaa tatcctttat aagtagcttt ttgagtaggt attgcttttg ccggctctat
     5641 acctaaatag taaacatacc catgtgcacc tgttctcaaa atttctttag gctttatttc
     5701 aggttttgca ccagaatgca gaacatagcc ggaacgaaca aaattaaaat ctctagtata
     5761 caacttatga tttctatcat gagtatggct aaatccatca gcactactac cgtacgcttt
     5821 aacctcttct tcatacggaa tttttgtcag atctccagta atctctttta tatcaccaat
     5881 aggggctaca tcttccttcc cctgcggaaa gagattacga cgcggaattt tggctgaaaa
     5941 accaaacccc ggctgcaata aagcttcagt ttcagaagcg cttactgtac gtcttgcgtt
     6001 actattatca tcttgtaaac ttggcttttt gggggtagtt tgcgtttgag attcaacttt
     6061 ggcagattga acatcaaagc ttccaccatt tgaggaacaa gcagcaagta gcgccgcatt
     6121 aagcagtaca
//
LOCUS       DANMGB010000143         6106 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.143, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000143 DANMGB010000000
VERSION     DANMGB010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.143"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..242)
                     /locus_tag="PXG19_002035"
     CDS             complement(<1..242)
                     /locus_tag="PXG19_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067302.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTSYRYQQ
                     AVEQSGVDALLNQNRRVPNLKNRVDEATEQAVVKFA"
     gene            complement(341..571)
                     /locus_tag="PXG19_002036"
     CDS             complement(341..571)
                     /locus_tag="PXG19_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067303.1"
                     /translation="MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNV"
     gene            complement(692..1009)
                     /locus_tag="PXG19_002037"
     CDS             complement(692..1009)
                     /locus_tag="PXG19_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6067304.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(1002..1160)
                     /locus_tag="PXG19_002038"
     CDS             complement(1002..1160)
                     /locus_tag="PXG19_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067305.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(1214..1369)
                     /locus_tag="PXG19_002039"
     CDS             complement(1214..1369)
                     /locus_tag="PXG19_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067306.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(1507..1764)
                     /locus_tag="PXG19_002040"
     CDS             complement(1507..1764)
                     /locus_tag="PXG19_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067307.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1778..1954
                     /locus_tag="PXG19_002041"
     CDS             1778..1954
                     /locus_tag="PXG19_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067308.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1958..2104
                     /locus_tag="PXG19_002042"
     CDS             1958..2104
                     /locus_tag="PXG19_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067309.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            2120..2326
                     /locus_tag="PXG19_002043"
     CDS             2120..2326
                     /locus_tag="PXG19_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067310.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            2323..3099
                     /locus_tag="PXG19_002044"
     CDS             2323..3099
                     /locus_tag="PXG19_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067311.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            3214..3626
                     /locus_tag="PXG19_002045"
                     /pseudo
     CDS             3214..3626
                     /locus_tag="PXG19_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3640..3795
                     /locus_tag="PXG19_002046"
     CDS             3640..3795
                     /locus_tag="PXG19_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067312.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3875..4849
                     /locus_tag="PXG19_002047"
     CDS             3875..4849
                     /locus_tag="PXG19_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6067313.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4936..5133
                     /locus_tag="PXG19_002048"
     CDS             4936..5133
                     /locus_tag="PXG19_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067314.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            5210..5452
                     /locus_tag="PXG19_002049"
     CDS             5210..5452
                     /locus_tag="PXG19_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067315.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(5612..5869)
                     /locus_tag="PXG19_002050"
     CDS             complement(5612..5869)
                     /locus_tag="PXG19_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067316.1"
                     /translation="MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQ
                     EDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF"
BASE COUNT         1809 a         1088 c         1226 g         1983 t
ORIGIN      
        1 aatgcaaact tcacaacagc ttgctctgtt gcctcatcca cacgattttt tagattagga
       61 acacgccgat tttgattaag taaggcatcc accccacttt gctcaactgc ttgttgatag
      121 cgataggatg tatctcgact catccccatc accttacagg cttgagagat attgcccagt
      181 tcttctgcta aatttaataa accggtcttg tgtttaatga gagggttgtt agaataaaac
      241 atgagagttt ccttttttgt ttagattgaa tttggacact catattctaa acgggaaact
      301 ctcacttttt agagtgaatt gtcagatcaa gtctgatctt ctacacatta tcataggttt
      361 ctactgcatg aataccacaa ccataatggt cagcaaagta agtagaacgc ttttgaggct
      421 taagggagaa cccattcatc tcagctctca tttcagcagc atttttcaag gcaacattta
      481 aattgtttga agactggcgt tgagcttcat ttttagctcg cacttcatta aaaatagaga
      541 taaacgtttg tgctttttta agtagagaca ttgtggttct cctgtttttt gcacctaata
      601 ttattgaact atggtaggct tggcgagcat tgccttgagt tttaattcgg ctacggtcat
      661 ttttcttttt atttccattt tatagctcct gttatgcttt gaatgcagag cgataatagt
      721 cggttgggta ttgttgacga caatggataa tggctaaaat ttgcacttga ttttctgttt
      781 ctcgatatat aattctataa cctcggcaaa agcattctct agtattttct actgaaccta
      841 taacaccaat tcgtggaaaa taagaaagat tatccaaagt gttatgaatt tccgcagata
      901 atttatcacc actttcatag ctataagtat attccacaac attacgaatg atttgttgta
      961 aattcatact tgctctgcga gtcattaaca cctcttttcg actaagcata cacggctccc
     1021 tgtagctctt gcaaggtttc atatatggtt ttttgacaca gttgacggct ttcttctaat
     1081 gaaataacac gtccgttttc tatatcatca agtccttgtt ttacttgctc tattaagaag
     1141 ttttggtatt cttctgtcat ggataactcc tatcattagt tgtatataga tatattagca
     1201 atgttacaaa ttgttaatcg tccagttctt gagcagtttc ttcaatagtt gattgaacta
     1261 acaatgtggc ttgctcaaga ggaatacctt ttccggattc taattcagct ctgccttttg
     1321 caattttttg agtaaggaac tcatcgtagc ctttttcttt aaatagcatt ttatgttcct
     1381 ttcacttatt acaaggcttt caggcatagg gattatgttc tcctaaatgc gaaatattgg
     1441 aataatttac gcttaaagca atagagtgtc aagagcaggg tttttggaag tgtggtttgg
     1501 gaatatttaa aaattatcat cataagtttc atcgtagtta tcgttttcat cgctggcatc
     1561 attttcatcg gaatattctt cttcgctata ttcctcttcg ttatatccat catcaagttc
     1621 aggttcttgt tcccttagtg attctttagc ttcaacttca ggcataaatt gctggtaatt
     1681 gtagaaaaaa gtgccatcgc tgcctttttc ccaaagtccg gcgtagttgt attttacata
     1741 ttcaggatca gcgtggcata tcatccctaa ttgaggggtg gcatatgttc gtatttacca
     1801 aggtgaggct tatggttggt gtgctgaaaa aggagaggca aatacagaat gccctgaggc
     1861 cttattggtg agtttaaccg gcgatatttt tgaagcagtc ggcggagata agctgaaagg
     1921 tgccaaaaaa tggcagcctt acaagaaaga atgacagatg gatacgacac aaaaacgtgt
     1981 ggctttattc atcattggat tatctgttgt gatgtggcta agaaagcata actgctgtac
     2041 agtgatattt gtattgttgt tggcagcgtt agcatttagc tacacgatgg aacatttata
     2101 ttagctgggg aactgaatta tggtaaagaa tgtggttcat gaagagatat tacataaccg
     2161 tgcagaatta cagcaagcgg ttgaaaaaga agaattttgt gcaaaatgtg ataactcagt
     2221 agtattccat ttacgtgata attatcacga atttacgctt gggttagata ctatattgca
     2281 gtgtctgcat tttgctgaag agaagggagc tatccggata ccttgaatat tgagtattca
     2341 ctcaatcatt gccaaggaga tggagtcgca ttttatggtc gacttggtac agatgatcta
     2401 atccagcttt tcaatcatct caatccacag aaacgtaaac agaaaatgtt tgctaatttg
     2461 ctaacgcaca ttgagtcttg ggaaacccac gatgatattg gttttgaaat tatacgaaat
     2521 cgctttgggt atcgttactc gcattggaat acgatggagc tttatgctaa aactgcagat
     2581 cagttagtgt ttttcaatga tagtgatgct cgaagaaact ggtattttcc gacttcaaaa
     2641 gtgtataaat acaaaggctt gtgggatgag tttattcagg atttagaaca gtatattaag
     2701 ggtacttccc gtgaaatgga atcggtcggt tatcaaatta ttgaagcctc gccgtatcaa
     2761 acggaaaccg ttttcaaatt taatacggaa aactatctag tagaactgaa acgtaaacct
     2821 tctgagtttt attcagagct tgttgattgg gcatttggtg atatgtgtga ttttgaagca
     2881 actatagagc agatttgtca agggcaactc tgttatgctg attttgaagc aactgttacc
     2941 gataagaaaa gtgaaattca gttaggtctt gctcgcttga gtggaataag ttactcgccg
     3001 aatgaccgtt cgtttagtgg ttatcgacaa gagcttattg gtgaggcgat tgcctctgct
     3061 cgccataatg cagcacgttt tgcctacttg cacgcctaat ttgcagattt gtacttcaat
     3121 ttgaccgctt gtagtggtta attttcaccc cgtggggaaa tattttccct attgggcaag
     3181 atgtttctcc actttttaat ttggagaaat gtgatgaaaa atgaacacaa tttagagcaa
     3241 cttaaatata tttgggataa ccgcaacctt gaaaataaag cctatcaata cctgtttcac
     3301 atttgcattg agccgatgaa aaaaggagat tggaatcgtt atacgatttg gcttaatttt
     3361 cacggcaact taatcaacgt gtcagacgtt gtatatcgag ttgtggaatc tcaaaagctc
     3421 aaggatgaca tcaaaatgtg gtatgacaat aataccattg tcgtccgata aaagttgaaa
     3481 caacaggctt catctcatat ttactgcacc agttctatca ggggatagcc tatattttac
     3541 tggaacaggg aatgattact gaaactgaag cagccgagaa aagttataac ttcagagctg
     3601 caaattgttt tcaacgtttg ctttaatgga ggtgagataa tggaaactcg cattgttaaa
     3661 gttatttacg atgatggtga ttatttcttt acccgaatca atgctgatga acaggctatc
     3721 cgtaattact acgccatagg cagttcaata ggttttgatg atataagaaa aattatcgct
     3781 gttgaaattt tataaaccac ccatagggga aactatttcc ccatagggtg atagcgtttc
     3841 cccatttttc tacccgaact ttggagaaac acttatgaac actcaaccta aatttgattt
     3901 ataccaacac atcactgacc gaattgttgt agcactggaa caaggtacag ccccgtggtt
     3961 aaaaccgtgg agccatccgg aatgcaatat ggcattacct cgcaatgcgg tatctaaccg
     4021 cttgtattcc ggtatcaata cactcttact ctggattgct actgctgaac atggttacaa
     4081 acagtgcaag tggattacag caaaaaaagc caatgaactc ggcggatata tccgtaaagg
     4141 ggaaaaagct actgtggtga tgaactaccg tcctgatgag agagagaaac tcgatgagga
     4201 agggaatatt gtgtatgacg aggaaggaaa tccggaaatg gaacgacact ttttcattaa
     4261 taagcacaat ctgttcaatc tggaccagtg tgaaaattta ccggtggaac tgtacgatcc
     4321 tgtatcagaa ccgaaacaac ctaaatctga gccaaaccaa tacgatattt ttgctgagat
     4381 tcggcagatt atcaaaggaa tggatttgca ggtggaaatg aagcctagca atcgggcatt
     4441 ttatcaacca ggtgaagata aggtcgtaat gccggagatg aagcagtttg caaatgctca
     4501 agcgtttcat agtgtattgt tacacgaaat gactcacgca acgggggcaa ataatcggct
     4561 taatcgggaa ggtattactt ccggaaaggc taaatttgga aacaaagtct atgcttttga
     4621 ggagttgatt gctgaaatgg gcggtgcatt tttatgtgcc taccttggtt ttgatactgt
     4681 gcctcaaaat gcggcgtata ttgaaagttg gattcgagta ttgaaagaag ataaacgggc
     4741 gattgtccgt gcttccggaa aagctcgtga agcctgccaa tacatgttag acgcattaaa
     4801 cgtcgcacag ttggctgaca aatacgatgt atttgaagaa gctgcttaac aaatttgccg
     4861 aaaggcatat ctcaagggga gacctatccc tttgggcata gtgtttccct attttttatt
     4921 aaatggagaa aagctatgac aaaatcaact gaaatacctc gtggacatga taactgggtt
     4981 attacaggca gagacaatga tgggaaatgg cataaagaac gttttcttta ttattctcgc
     5041 cgtgaagcca tccaacagtt tcgtcgaaaa cacaactgcg taggtaaaca tagtgttatt
     5101 gaatcaataa cacctcaatt tggctggtat taaccggctt tcccgtgggg agatactctc
     5161 ccttcggagc attgtgtctc cctttttatt cacttaacta gaggacacaa tgttcaatct
     5221 aaacttattt aaacgcccta ttgagctttc aacgcttgaa tcttggtcta aattctgtga
     5281 tgatgtcggt aaagttgcat ttattgcgat acctccgatg atttatagta attatgatct
     5341 atgtatcaaa ataggaaaca taagtgcttt attggcaatt acctatggat tcttattatc
     5401 aggcaggact atccgtcaat ttattgagaa ggagaaatca agatgggatt aacaatcggc
     5461 ttatggatca ttgcttttat aggctttgca ctggtttttt gggcaaatag cttactcaaa
     5521 gagcaagatg aacgccttaa acagctaaaa aaatagctca actttacact caatacggca
     5581 catttggtgc cgtatttcat tcttatccta attaaaaatt agaattatat ttttcccatt
     5641 tttcagcccc acttatatca tcacctccag ttgcctcaaa aatttcatta gataagctga
     5701 caattaaggc ggtagggcat tccgtgtttg catcttcttg ctctgcacac cagccatagg
     5761 cttttccctg ataaatacga acataaccac gctctagcat aaaagggtga gaatccttgt
     5821 gattttgacg aaatttttga gcaatagaca aaatttgttt attgttcata attatttttc
     5881 ttattgctta tatgctgaaa attgatgatt gaatttatta tatctaatta taatattcaa
     5941 tcctgttgct atactgtcta aatcgactat gtgttcatcc ttttggttca taaatgtaca
     6001 tttctctata ataactaaaa tgtttttggt ctctgaattg tttattattt cttttgctgg
     6061 cattagctcc ataaagtgag ataacttcat tcttattgtt ctgaag
//
LOCUS       DANMGB010000144         5994 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.144, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000144 DANMGB010000000
VERSION     DANMGB010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5994
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.144"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(212..1498)
                     /gene="purD"
                     /locus_tag="PXG19_002051"
     CDS             complement(212..1498)
                     /gene="purD"
                     /locus_tag="PXG19_002051"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL6067317.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1732..2106
                     /gene="rpsF"
                     /locus_tag="PXG19_002052"
     CDS             1732..2106
                     /gene="rpsF"
                     /locus_tag="PXG19_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL6067318.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2081..2455
                     /gene="priB"
                     /locus_tag="PXG19_002053"
     CDS             2081..2455
                     /gene="priB"
                     /locus_tag="PXG19_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL6067319.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2430..2657
                     /gene="rpsR"
                     /locus_tag="PXG19_002054"
     CDS             2430..2657
                     /gene="rpsR"
                     /locus_tag="PXG19_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL6067320.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2673..3122
                     /gene="rplI"
                     /locus_tag="PXG19_002055"
     CDS             2673..3122
                     /gene="rplI"
                     /locus_tag="PXG19_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL6067321.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3186..3962)
                     /gene="dnaQ"
                     /locus_tag="PXG19_002056"
     CDS             complement(3186..3962)
                     /gene="dnaQ"
                     /locus_tag="PXG19_002056"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL6067322.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4050..5720)
                     /gene="ettA"
                     /locus_tag="PXG19_002057"
     CDS             complement(4050..5720)
                     /gene="ettA"
                     /locus_tag="PXG19_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL6067323.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1574 a         1385 c         1272 g         1763 t
ORIGIN      
        1 gattttcttt tctatttaaa gatcttttta gtctttgcca atattgacag ttttttccac
       61 atatagggca cgcagagtca tttagaaaag agtttactgc atcgtttaat gatagtgatt
      121 taatttcggg gcctgcatcg agttcagtga tattaatttc attaagtgtt gtactcataa
      181 taaatttttc cttgttttaa gagtttataa attatttcgc ttgttttctt gccactgctc
      241 ggtagccaat atctcggcga tagaatttgc cttgccattg aatttgttcg gcaagttgta
      301 aggcttgttg ttgagcttca aatacactgt tgccaagtgc ggtggcacaa agtacacgtc
      361 caccgttggt gagcagtttt ccttcttttt gctcaacccc tgctaagaaa actttttgat
      421 tggaggtaga ggtcggaatg cctatgattt catcgccttt acggtaatcg cccgggtagc
      481 ctgcggcagc taaaacaatg cctaatgcgg cttgttcaca ccattttgat tgcacgctat
      541 ccaatttgcc ttcgcacgct tttaagcaca attcaacgag gtctgattcc aaacgcatca
      601 taatcggctg agtttcaggg tctccaaaac ggcagttaaa ttcaatcact ttcggctgac
      661 cgtttggcat aatcattaag ccggcataga gaaaaccggt gtaaggggta ttttcgcttg
      721 ccattccttg cacggtcggg taaataattt cgtccattac acgttggtgg attgcctttg
      781 ttaccaccgg agcaggggag taagccccca ttccgccggt atttaagccg ctatcgccct
      841 cgccaacacg tttgtggtct tgtgaggttg ccattggttc gacatttttg ccgtccacca
      901 tcacaataaa actggcctct tctccgtcta aaaattcctc gatcaccaca cggctgccgg
      961 cttcaccaaa ggcgttgcct gacagcatat cacgcactgc atcttccgcc tcttgtaaag
     1021 tcattgcaac aattacgcct ttgcctgcgg ctaaaccgtc tgctttgatt acaatcggtg
     1081 cacctttttg ttttaagtag gcaagtgccg gttcaatttc ggtgaaattt tggtattctg
     1141 cggttggaat ctgatggcga gccaagaaat ctttggtaaa tgctttagaa ccttctaatt
     1201 gagcagcggc ttgggtcggg ccgaaaatgg ttaaaccgtg ggctcgaaaa gcatcaacca
     1261 cgccaactac taacggtgct tcagggccga caatcgtcaa acctacgcta ttttgtttag
     1321 cgaatgtaac taaggcaggc acgtcagtgg cggaaatagc tacattttca atgccgtttt
     1381 ccatcgctgt gccggcattg ccgggggcga caaagacttt gtctgcgagc ggcgattgac
     1441 gaactttcca agcaagagcg tgttcacgcc caccgttgcc gataattaaa atattcattg
     1501 ggattccttg caaaaatgat aaagcaaacg tttgcgtatt gtacttgatt tgtttatctg
     1561 ctgacaagca gtcgtttttc tcggattttt tgcaaaatac gaaattgttg cttgcaaaat
     1621 aggctttttt cagtataatc ctgccgttca gtcacattcg ttttttaatc cttgcttcca
     1681 caagttggtg actggctaaa gttggaggct gctaacccgt aaggatagtc aatgcgtcac
     1741 tacgaaatcg tttttatggt tcacccggac caaagcgaac aagtaccagc aatgattgag
     1801 cgctacacag cgtctgtaaa agaagctggc ggtcaagttc atcgcttaga agattggggt
     1861 cgtcgtcaat tagcataccc aatcaacaaa cttcacaaag cacactatgt gttaatgaat
     1921 gtagaagcac ctcaaagtgt aatcgacgag ttagaaacta acttccgtta taacgatgca
     1981 gttcttcgta acttaatcgt tcacactaaa gcggcagtaa ctgaagcgtc accaatggtg
     2041 aaagcgaaag aaagcaaagt tgctgaagcg gtagctgaag ttgaatcaga ggaagcaggc
     2101 gagtaatttg ccgattgata attgtttaat cttaagcgga acggtttcca gcttggttaa
     2161 acaaagccta aacccccttg gtgtgcctca ttacagtttt tggttagaac atcgttcaat
     2221 ccaaaccgaa gtgaatttag aacgccaagc gtggtgcaaa atccaagtgg ttttggcagg
     2281 caatcaattt agttatttaa cccaacaaat taagctcggt gagagcgtga gaattaaagg
     2341 ttttatccat actcacaaag actttaacgg tttaaatcag ttagtcttac acaccgaaca
     2401 aattgaattt atagatcagg agaagccaaa tggcacgtta tttccgtcgt cgtaagttct
     2461 gccgtttcac agcggaaaat gttgttgaaa tcgattacaa agatatcgct acattaaaga
     2521 actacatttc tgaaagcggc aagattgttc ctagccgtat tactggtact cgtgcgaagt
     2581 atcaacgtca attagctcgt gcaattaaac gcgctcgcta ccttgcgtta cttccatata
     2641 ctgataacca ccaataatca ggagagagta caatgcaagt tattttatta gacaaagttg
     2701 ctcacttagg ttctgtgggc gaccaagtaa ccgttaaatc tggttttgct cgtaacttct
     2761 taatcccaca aggtaaagcg gttatggcaa ctgcggcaaa cattgctcac tttgaagcac
     2821 gtcgtgcaga attagaagca aaagctgcag cagcattagc aactgcacaa gaacgtgcag
     2881 cgaaaattgc agcattagca gcagtatcag tatctgcaac tgcaggtgat gatggtcgtt
     2941 tattcggttc tgtatcagct aaagacatcg ctgaagcatt aactgcagca ggtgttggag
     3001 ttgctaaatc tgaagttcgt ttaggtgaag gtccacttcg tacaaccggc gaacaccaag
     3061 ttaaaattca cttacaccct gaagtgaatg caactgtagc agtaaacgtt gttgctgaat
     3121 aatcagtaga aatagaaaac ccagcgaaag ctgggttttt tgtttgcttt atttattggt
     3181 tagaatcagt gagatatttc tgctgtgtcg gttaatgctt ttgtccatag gcaatttcct
     3241 ttggattttt tctcaatcag tttcagaagt gctaaatgcg actcttcctc ttcatcgttt
     3301 gctttaagaa taattgcctc atcggcattt aacacaattg cagaaaattc ttcttcaata
     3361 tcaataactt cacttaccac ttcagtttct tcttcgccta ataatgaaat ctgaccgccg
     3421 gtcatcatta ggaatacatc agctaagatc tccgcatcca gtaacgcccc gtgtagtaca
     3481 cgcttgctat tatcaatgcc gagcctgtcg caaagtgcat ctaaattatt ccgtttgccg
     3541 gggtacattc ttcgtgccat ttgcaggcta tcggttacgg tacacatttc tgcggttttt
     3601 gccggtggat taggcagata agaaaattct tgatccataa acgccacatc gaagggggca
     3661 ttgtgaataa ttaattccgc acctttgatg aaatccaaaa actcctcggc aatttcagca
     3721 aaaacaggtt tatcttgcaa aaattcattg gtgatgccgt gaactgcaat cgcctcttca
     3781 tctacctcac gcggtggctt gatataaacg tgataagttc tgccggttaa acggcggtta
     3841 atgacttcaa ccgcaccgat ctcaataata ttatgcccaa tctgtggcgg gccacctgcc
     3901 atattcattc ctgtggtttc agtatccagc actacttggc ggataatttt ttcttctgtc
     3961 atattcaatt taaaattgta ggggtgaaat atttttatcc cttaattctg catttgatta
     4021 ggggcgaaac atatttcgcc cctacattgt tacttcgcaa tccgtttata tttcactcgg
     4081 tgcggttggg tggcggcttc accgaaggtt ttcttcttcc actcttcata gtcggagaag
     4141 ttaccctcgt agaacgtcac tttgccttca tcgccgtagt ctaaaatatg ggtggcgata
     4201 cggtctaaga accagcggtc gtgcgaaatt accattgcac agcccgggaa ctctaagatc
     4261 gcattttcca acgcacgcag ggtttctacg tctaagtcgt tggtcggctc gtccagtaac
     4321 aacacgttac cgccacgttg tagtagcttc gccaagtgta aacgaccacg ttcaccgcct
     4381 gaaagctcgc ccacacgttt ttgctgatct acgcctttga agttgaaacg ccccacataa
     4441 gcacggcttg ggatttcaaa gttaccaatc gtgagaatat cctgcccgtt cgacacctct
     4501 tcccacacgg ttttcttatc gtccatcgca tcacggaact gatcgaccga tgccattacc
     4561 accgtttcac caagcacgat tgaaccagaa tccggctgtt ctttaccaga aagcatacgg
     4621 aacaaggttg atttacccgc accatttgcc ccgataatcc cgacaatcgc ccccttcgga
     4681 atagcgaacg acaagtcgtc aatcaaagtg cgatcgccgt aagatttagt caggttttgt
     4741 acctcgatca ctttatcacc taagcgtgga cccggtggaa taaagagttc gttagtctcg
     4801 ttacgttttt gatattcgcc tgagttaagc tcttcaaagc gtgccatacg agccttactt
     4861 ttcgcttggc gaccttttgg attttggcgt acccattcca actctttctc aatcgatttt
     4921 tgacgagccg attccgccgc ttgctcttgt gccaagcgtt tttctttctg ctccaaccaa
     4981 gaagagtagt taccttccca aggaatgcct tcaccacggt caagctctaa gatccagccc
     5041 gcaacgttgt ctaagaagta acggtcgtgg gtaattgcca ctacggtgcc ttcgtagtcg
     5101 tggaggaaac gctccaacca cgccaccgat tccgcatcta agtggttggt cggctcatct
     5161 aacaataaca tatccggttt ttccagcaac agacggcaaa gtgccacacg gcggcgttca
     5221 ccccctgata aatgctcgat ttttgcgtcc caatccggca gacgtaacgc atcggcagca
     5281 cgctctaact ggttttgaag gttatggcca tcgtgggctt gaataatcgc ctctaattcc
     5341 gcctgttttg ccgctaattt gtcgaaatcg gcattctcat cagcatacat cgcatagact
     5401 tcatcaagct gggttaaggc gtttttcact tccgcaaccg cttcttccac cgcttcacgc
     5461 acggtttgct gtggggcaag tttcggttct tgtggaagat agccgatttt aattcccggt
     5521 tgtggacgag cctcgccctc gaactcttta tctacgcccg ccataatgcg taaaagcgtt
     5581 gatttacccg ccccgtttaa gccgagcacc ccgattttcg cccccgggaa aaagctcagg
     5641 gaaatatctt taagaatgtg acgcttcggc ggcacgactt tgccgacacg gtgcatcgta
     5701 tatacaaatt gagttgacat tggttgtatt cctcacaaaa aaattcgcct tattttactt
     5761 gaatttacag ccaaaatata gggtggtttt ggcttttggt aaagtaacct tttccaatag
     5821 agatgttatt tgaggctgca tagtactatg catttctctt accttgacag gtaagagaaa
     5881 caaatcctga aggaaaaaaa ttttaaggaa gttattctat gcaatatgta tgtccaaaaa
     5941 cactcaaatt attcaacagc attgttggtt gttataaggg agaagattaa ttct
//
LOCUS       DANMGB010000145         5899 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.145, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000145 DANMGB010000000
VERSION     DANMGB010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5899
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.145"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            163..393
                     /locus_tag="PXG19_002058"
     CDS             163..393
                     /locus_tag="PXG19_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067324.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            775..1011
                     /locus_tag="PXG19_002059"
     CDS             775..1011
                     /locus_tag="PXG19_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067325.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            1318..1393
                     /locus_tag="PXG19_002060"
     tRNA            1318..1393
                     /locus_tag="PXG19_002060"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1351..1353,aa:Arg,seq:tct)
     gene            1580..2086
                     /locus_tag="PXG19_002061"
     CDS             1580..2086
                     /locus_tag="PXG19_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067326.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            2090..2449
                     /locus_tag="PXG19_002062"
     CDS             2090..2449
                     /locus_tag="PXG19_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067327.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            2446..2925
                     /locus_tag="PXG19_002063"
     CDS             2446..2925
                     /locus_tag="PXG19_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067328.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            3059..3271
                     /locus_tag="PXG19_002064"
     CDS             3059..3271
                     /locus_tag="PXG19_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067329.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            3284..4234
                     /locus_tag="PXG19_002065"
     CDS             3284..4234
                     /locus_tag="PXG19_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067330.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            4275..5069
                     /gene="bet"
                     /locus_tag="PXG19_002066"
     CDS             4275..5069
                     /gene="bet"
                     /locus_tag="PXG19_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL6067331.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            5066..5701
                     /locus_tag="PXG19_002067"
     CDS             5066..5701
                     /locus_tag="PXG19_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL6067332.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            5714..5890
                     /locus_tag="PXG19_002068"
     CDS             5714..5890
                     /locus_tag="PXG19_002068"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067333.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
BASE COUNT         2072 a         1221 c         1222 g         1384 t
ORIGIN      
        1 aacaaccttt ctaaaaataa tttctcttta aaatcaatta tttaatcacg aattgaaatt
       61 tgtttggcta aaataattac aaattgaatt gacttaatga tttcaatttg tgataataaa
      121 cccatcaaaa caaacaacgc cacagacaaa gaggaaacca aaatgaacgc acaagcaacg
      181 ctaaataacc acaaagacta cattttatgc ggacgcaaag aaaaacgcac cagtgatttc
      241 atcaatgtgt ttgaggtctt tgaaaatgaa gccacgcaag agtttgtgat tgaaagagca
      301 atgttcagaa atggcaagtt aatcgactgg aaccaaagcg acaaaatgaa cgccgagcaa
      361 gctcaacaac tttggcaagc ctacattcac taagaatttt tatcaaagcc cttcacggag
      421 ggcttgaata aaggttctaa acctcgccga aaggcattgt tctttaaaaa ttaaaccaaa
      481 aacacatcac gacaagcgga ttacttagca atgtaatgac attggagaga cagaaccaat
      541 ctttgcataa agcggtaaaa cgtatgcggt aaatgaactt ataggcaagt tgtgaaactc
      601 tctaagctac tcggactgaa agaatagtac ggtagttgtg gcgaatttac tggtgatgtg
      661 cgaactagcg gaaaggttaa gcactggcag tgaatcggga agcacaaacg ctggttcaat
      721 tccaaagcat atttgagaaa gtgtgctttg gaatattaat aacaggagaa caaaatgagt
      781 aatcaggaat ttgttaaatt aggcagcgtt gaaccttcaa cgattgatga attacagaaa
      841 gaagatatta ggcaggcaat attaaaatcc gtctctataa cgccatatta tgtggggctg
      901 gaaatagcgg tttgccaagc aatatcagcc atcaataaat ttagtgatgg ctgtattaca
      961 gaagagcttt tagatacgaa aaatggtgat aaataccgaa aaaataacta atcaataaca
     1021 ccaaagtgat ttcatttttt cggcattagc cctagatgtt gcccaagtat tatattcctc
     1081 gaagttgtgg caaacaagag gacttggccc ggtggctcac aagtataaaa aagagccacc
     1141 atctctaaca gctctcaaca gagagtgaga caaataaccc cgttttagtt ttaatgtttt
     1201 ctaaagtcgg cgttaggcag cgaaacgaat gtactagaga gttgttagag atggttagtc
     1261 catcacattc cttagattga agtaagccct gccgttgggg ttaagcaacg gtactttgac
     1321 cgcatagttc agtggataga gcagctgcct tctaagcagt gggtcgagag ttcgaatctc
     1381 tctgcggtcg ccatccaaaa ccgctttacg cacatcatcg atgacgagcc tacgaagtgg
     1441 aaacctaccg tgtagagcgg ttttgaatgg ctaagttgtg taactgctac aacttaaaaa
     1501 gagcggttga taataaacat aatgactccg tttccccgcc tcgtgcgggg ctttttttat
     1561 ccacataaaa ggattcaaaa tgaaaactaa atacaaaatt attattgagc gagcaaaaca
     1621 acagggtttg acccatattg agcttactca aaaacattgt ctgtatctcg ctacatcagt
     1681 agggaaactg tgctacgggg tagctaataa tgcagaacaa catattaaac ttgctgctgg
     1741 agagattttt acactactaa cgatcattaa ccatcaaatc cagttcgatg aagacttaga
     1801 gcttcacacg tggaaagcta gtggaacaac cccacccgag caaagagcga tacgtatgtt
     1861 acatcatacc tcgcaatttg cttggtttgc tccttggtta gtggacagca atgaaaaaga
     1921 acaaaaccaa aatacaatca ggattaattt atttaacaaa tgctctggga ttctgattga
     1981 actaaatggc attcttaaag aatacgagct aactcttgat gagtgcttag atgaattctt
     2041 gaaaaataag cattgtttga atgaatttag tattcacaag gagtaaaaaa tgacgacgtt
     2101 tagtatttat accagtgtat ggcacgacag ctccacgaaa ggctttcgcc acaacattaa
     2161 gcataaacgc cacgattgct ggagagcgga tatccgcata aagcaaaaaa tcaatgatgt
     2221 gtgggtgcag atttcaagga tacgcaaacg cttcaagtgc cctgaacagg caaaatcctt
     2281 tgtagaacaa tggaaacaaa ttgattcacc tgcatttatg caacaccaaa tcaaccgcca
     2341 agcattaaga gaagaattat caaaccttga gcaacgcaaa cagaagcaag acggaatact
     2401 tgaggtgatt gagtatcgta ttagccaaat caaggagttg ctgaaatgaa acgcaataaa
     2461 gtagaaagct atactatccg cttattaaaa aataatcata caaaacgcta cttcggagaa
     2521 gttatattaa acggcataaa agaaatcagc acggcagaga tgatgtctga aattaacgct
     2581 attaaggcag taaataagcg cattgaagct ctgaataaaa ccaaagccgt taatttgcct
     2641 aattatcctg aaatccgggg tcatcagcct attatgtaca attacaattt tgaacaaatt
     2701 gaggaagatc ctgaacaggt taagcctaaa ccatcaaaac caaaacgcaa gccattcata
     2761 ccttatgggc taaacggcta ctttgtggat agcaacggta atattcgctt acatctagac
     2821 agacgagcaa gtgccgaaac aattaccctt gaaactgatt tcttcaacgt tcttgccgaa
     2881 atggtaaaac gtacacaaga ggcaaacaat gctaaacatg cttagacaat ggattaaata
     2941 cggcttatac gccctgcttt ttatggttgc catcaccctc ctaatgcaat gaagagctta
     3001 tccctgaaag cacctgcaag cctgaaactt gcgaatttaa agtaacggag aaagtgtgat
     3061 gataggatac gaagactaca cagatgcttc acttcaacca gaagaagacc ctagcgaaga
     3121 ggctttcatc ttggctgaag aaaacatcat cgagctatta gaaaacaacg gctttgaaac
     3181 cattgccacc atcctagccg gttctgatgg ctggcgtaac gcaatcaacg cctacctagc
     3241 cgaacagaac aaacacagaa atgaatttta gaggaataag aaaatgacaa ctgcaaatca
     3301 acaatttgaa cttattttaa aaaccgaaag ccgagtggtt tctaccaact tgcaaacttt
     3361 tgaagagcaa gcaaatcaat accttgccac gctcaccacc acctttgaaa ccgatgatga
     3421 ttttgcaaaa gcaaaagaag aagtgaagga gcttgaaagc attgagaaaa aaattcgtga
     3481 cgcaattaaa caaacgcaaa ctggcgagat tgcggaattg gtattaacag cagaacaaat
     3541 cgctgaacgt ttccgccaag agcgattaac ccgagacaag ctcgttaaga gcaaagaaac
     3601 ggaaatcaaa aaacagattg ccgataaagc cattgaagaa atcactgata ccagaaacaa
     3661 gctggttaaa gtaagtgata tttcccttgc cttagaaatc acaatgccaa aacacggcat
     3721 tgctaatcgt attgccgagg cacagaaaaa taaacgcacg attgacagct taaccaaagc
     3781 cgtgaacgcc gaaaaagcgc tgattatcag cgaaatgtcg gtagaaatcg ggcgcttgac
     3841 tgagcgatta gaacagcttg ctgcaaaatc agcttatctt tttcctgatg cagtgaaatt
     3901 gatcgcaacc caagacgacc tcgccccaat tattcaacaa cgccttgccg aagaagccga
     3961 gcgtgaggcg gcgattaaag ccaaagcaga agccgacaaa gtacaagccg aagccaaagc
     4021 gattactgat aaaatggagc gcaaacaagc ggtcgaaaat ccgcaaaatg tggcaaaaat
     4081 gaacatcgaa gaaccggcac aaaccgatgg gccattaggc gattttatca ttactattcg
     4141 cttaaaccaa acaatccaaa ccaacgcagt cagtattgct cgtgagctga aagcgaaatt
     4201 tggggatagc gtttcgctca ataaggctaa atgatttgat accgcacaaa ttcaacctaa
     4261 ataaggatca tattatgaca actgcattac aaacactaac caacaaactt gccgagcgtt
     4321 ttgaaatggg agatggctca ggattagttg agacacttaa atcgtctgct ttcgcagggg
     4381 caaccgtaag cgatgctcaa atgattgcac tattggttat tgctaaccaa taccaattaa
     4441 acccttggac aaaagaaatt tatgcattcc ccggtgggaa cggtggatta acgcctattg
     4501 tcggcgttga tggttgggtt cgcattatta accgtgagcc tcaatatgat ggaatggaat
     4561 ttcattttac cgatgactat tccgcctgta cttgtactat ctaccgtaaa gatagaagta
     4621 aaccgattgt ggtgacggaa tttatggggg aatgtaaaaa gagctctcca gcttggaact
     4681 ctcacccaaa aagaatgtta cgccataaag caatgatcca atgtgcaaga ttagcctttg
     4741 gctttacggg tatttacgac caagacgaag cagagcgtat tgcggaaaat gaaaaaccac
     4801 ctaaaaacat cacaccacaa aataacgtgg tagaaaccac tgccgttgaa ctcatttcgg
     4861 aagaacaact gtcgcaaatc cggcagttaa tgcaagtaac cggtacggag gaggcgaaaa
     4921 ttctcgccta tattggcgtt caagcactga accaaatccc taaatcgcag gcagaggcag
     4981 tgattaaaaa gctcaatctt acgctagaca agcaaaacgc tgaaaaggcg gataatggcg
     5041 aaagtgtcgg tgaggaaatc ccactatgac aggcgattta atcattttag attgcgaaca
     5101 aggatcagaa gaatggctca atgccagatt gggcattccc accgccacag gcattgaaaa
     5161 tatcgttacg ccaagcggta aaaaatcgtc cgcttggaat agctatcttg ccgaactggt
     5221 tgccgaaagc attgagggag caaaagacgg ttttaagtcg tctgatatgg cacgaggcaa
     5281 cgagcttgaa ccgcttgcac gaatggctta cgagtttgaa accgacaccg aagtcgtgca
     5341 agtcggcggt gtgtacctta acgccgaaaa acagttaatg gtaagtcctg acggcttaat
     5401 tcccaatcta aaaaaagggt tggaaatcaa atgcccgaaa atgaaaaccc acatcaaata
     5461 cctgctagaa ggcggtgtgc cgaatgaata tcttattcaa gtgcaatctg ccctttgggt
     5521 aacaggctac gaaacgtggg actttgtcag ctactgcccc gaataccaaa aacaaccgct
     5581 ttacatctac acagccgaac gtgatccggt attgatgaaa gcctttgatc aatatatccc
     5641 gcaatttatc aaatcccttt atgcattgaa gggggtaacc gccccgaaag gggcttttta
     5701 ataggtagcc aatatgacaa cccaaaagaa atacgaacta ctccaaaacg acacaatcaa
     5761 ccacaacggc agaacactct accgcatcaa agccatatgc cactttaggc ggacggctga
     5821 atattccgca agagccactc acgccacagc cgctgaatgc tatggtggaa ttgcctgtac
     5881 atcaacataa ccacaaaca
//
LOCUS       DANMGB010000146         5897 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.146, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000146 DANMGB010000000
VERSION     DANMGB010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5897
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.146"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            23..1840
                     /locus_tag="PXG19_002069"
     CDS             23..1840
                     /locus_tag="PXG19_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL6067334.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            1843..2460
                     /locus_tag="PXG19_002070"
     CDS             1843..2460
                     /locus_tag="PXG19_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6067335.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(2544..3155)
                     /locus_tag="PXG19_002071"
     CDS             complement(2544..3155)
                     /locus_tag="PXG19_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL6067336.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            3350..4258
                     /gene="glyQ"
                     /locus_tag="PXG19_002072"
     CDS             3350..4258
                     /gene="glyQ"
                     /locus_tag="PXG19_002072"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL6067337.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            4338..4598
                     /locus_tag="PXG19_002073"
     CDS             4338..4598
                     /locus_tag="PXG19_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067338.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            4641..5675
                     /locus_tag="PXG19_002074"
     CDS             4641..5675
                     /locus_tag="PXG19_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6067339.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
BASE COUNT         1813 a         1116 c         1304 g         1664 t
ORIGIN      
        1 atagcactat tttgtttcga taatgattat aaaagataca cactggacat ctcaacaagc
       61 ctctccaaat gctttcccag aacgacaggc acttatgcct atttggggtg ggaaaaatat
      121 tgaacgcaat caatggcaat ctttatggct ggaacaagca ccaaatgcgt tattacagga
      181 tggtttagct tatttccata ttccgttttg cgctagtcat tgtatttttt gtggttttta
      241 tcgcaatgct tggaaggaaa attatagcca gatttatact gatcgtgtga ttagtgaact
      301 tcgatatgaa tcttcactat ggcgaggaca aggtaagatt catgccgttt attttggtgg
      361 aggaacgcca acagcgttac atacagaaga tttagtacga ttgattcgag cttgttatcg
      421 ttatttgcca ctcgctgaag actgtgaatt tactattgag ggtagaatta gccattttga
      481 tatagataag gctaaggctt gtattgaagc aggcgtgaac cgtatttcta ttggtattca
      541 gacttttaac tccgaaattc gcaaacgttt agggcgcaaa catagtggcg aagaggctca
      601 aacttattta aaagccttat cggaattaaa tgctgtgatt gttgctgatt taatttttgg
      661 cttgccaaac caaacagatg atatctggca aaacgatatt gaaattgcga ctagtttacc
      721 gatctcaggc ttagatattt acgcctttaa taattatcct ttcctgccta ttaatcgctt
      781 aattgaacat ggaaaattac ctgcgcccgc agggtttgac acccaaagct tacactatgc
      841 ttatgcagta gagaagttaa aagcacaagg ttggcagcaa gtgagcaata accactttgc
      901 ttttccaaat cgaggtgaac gcaatcgcta taatactttg gttaaatcga atatgccttg
      961 tttggcattt ggctccggtg cggggggaaa ttttggtggg ctgagttacc aagtacaatc
     1021 tgatttaaag acctacttag attcgcctct tgatcagaaa agcctttctt ttttgagtaa
     1081 acatggtgaa cataaagcac tgcttggtgt gatacaacat agcatggaat tgggttactt
     1141 agatacaacg ccttttgaac aaaatgcgaa agctgaaaaa ttattgcaac aatgggaagc
     1201 gcttgattta ctgaagcgtg aaaaaaatca agtatatctc aataccagtg gtcgttactg
     1261 gtcaccaaca ttaattcgta aactaatgtt aacacttcct caatcaagta aggataacaa
     1321 catgataacg ccattaacta aagaattaga aaataaattg cggacaaatt taaaagaaaa
     1381 cccagggcaa attttagaaa tgctggcagg aatgaatcaa tgtagcttgg aatcggtaat
     1441 taactgtctg cccaaagaaa tggtaatgca aacaggtggt gagcgttttg tggaaattat
     1501 gcaggcaatt gctggttgga atgaagctgt gacttttatt attcatacgc ctgatgcgat
     1561 tgcagaggta actgctaaat tgccacaagg taaaattggg cgaggttttt ataattttga
     1621 acatggtgta gatggaggaa ttcacggtca tttacgctat gaaaattgtg ctgctattta
     1681 cttacttgat cgcccattta tgggaaaaag aacggtggcg ttaactttta tcaatcaaag
     1741 cggtgaggcg atgtttaaga tttttgttgg gcgtgatgaa caaggtcaat tacgagaaaa
     1801 tcagattcaa gccatgcgga aattaattgg aggatgctag tcatgatttt ggtttgtggg
     1861 gcaaatgggt tgttaggacg agcaatctgt gacaaattac ctagagagaa aacgatagcc
     1921 gtcttacgaa aagatgctat ggatacgttt ttcagcgaac gaaatatagc agtagaaata
     1981 gcagatttat tagatttgga atcctgcaac gccttgttac aaaaaacaca accggaaatc
     2041 ttgattacgg tagtaggagg aaaaaatgaa caaggtattc gtagcgacaa aacagcaaat
     2101 attaatttga taaaagcagt tgaaaaatat tcaccaacta cgaaagtagt tttagttact
     2161 agtgttgggt gtgcagaaca atgggattta attagcccat tagcacagca agctttaggt
     2221 gaagcactaa aagccaagac ggaagctgaa gcttatttac agcaaacagc attaaattgg
     2281 ctgattattc gacccggtgg gttaaataat gatgaagtaa atgatgagta tcagattgtg
     2341 cgtgatttac ctaatgaacg gaaaatgtat gtaagccgta aatctgtcgc aacaggcata
     2401 gtgcgtttac tggatagtac ggaaaatcat caaatcttct ctattattaa taggggatag
     2461 tatatttcaa cgaaggcaag cgggcatatt ttatggttat tttgcaacta taaaacagac
     2521 cgcttgtgag atctttttct attttattga gaactggatg ccgcattcat ctgcaagtag
     2581 cgaagcacct ttttctgggt agcttcgtcc atatcggtaa aaccgaccat tccgttaaat
     2641 actgcaatcc attcgtttgc atcatgcatt ttaggatcac gttgtttatg gcacacgctg
     2701 cattctgttt tataggtatt tttggtgttc gcccaaaagt tagtgagatc ttgggtaaat
     2761 tcggcatttt ccacccacac gttcattttc actttttgcc ataccaagcc ggtgttcgga
     2821 tcttccttgc tctctacaat ctctaacagt gggttgttgc tgataaaaga tttctcaaat
     2881 accgcatcgg taatattttt actgaaagaa tgataccaaa tccgcccgaa acctttgctt
     2941 tttcgccata aattcagctc aatttcagcg gcttttgcgg ttgtttgcac caatttaatt
     3001 tctgctccgg cttctagctg cccgattttc tgtgtcaaat tttcatcggc aaataaaggg
     3061 attgtttccg tggtgtaact gtttgaaccg gcaaaacaaa atgttggcat gatgaatgcc
     3121 aagaaacaga aagcgatttt cgataatgat ttcatcataa accccacaaa ttagatgaga
     3181 aattaggtta tatgttacac aaattgagca aaaaagcgtt gatttacatc ataaaactga
     3241 ttttatgtcg atttcttaat tttttgcaaa aaaatcccaa aaaatgactg cttacaagct
     3301 ataataacca gtatttttcg accatttttc aaattcaaga gaaaataaaa tgagtacaaa
     3361 attcaacgta aaaacctttc aaggaatgat tttagccctg caagactact gggcaagcaa
     3421 aggttgcacc attgtgcagc cgttcgattt agaagtgggg gcaggcacct cgcacccaat
     3481 gacctgcctg cgtgcgcttg gccctgagcc aatggcgttt gcctatgtgc aaccatctcg
     3541 ccgcccgaca gacggtcgct acggcgaaaa tccgaaccgt ttacagcact actaccagtt
     3601 ccaagtggtg attaaacctt cgccggataa cattcaagaa ctttacctcg acagcctgaa
     3661 aatgctcggt ttcgacccaa cccaaaacga cattcgtttt gtggaagaca actgggaaaa
     3721 cccaacgctt ggggcgtggg gcttaggttg ggaagtgtgg ctgaacggaa tggaagtgac
     3781 ccaattcacc tacttccagc aagtcggcgg cttggaatgt aaaccggtga caggcgaaat
     3841 cacctacggc ttagagcgtt tggcgatgta cattcaaggc gtggacagcg tgtacgacct
     3901 cgtgtggtct gacggcgaac tcggtaaaac cacctacggc gacgtattcc accaaaacga
     3961 agtggagcaa tccacctaca actttgaata cgctgatgtg gacttcctgt tccaatgctt
     4021 cgagcagtac gaaaaagaag cccaatacct gttaggccta gaaaaaccat tgccattgcc
     4081 ggcatacgaa cgcattttaa aagccgctca cagctttaac ttattagatg ctcgtaaagc
     4141 gatctcggta actgaacgcc aacgctacat tctacgcatt cgtgccttaa ccaaaggcgt
     4201 tgctgaagcg tactatgcca gccgtgaagc gttggggttc ccggggtgta aaaaataatc
     4261 gtagggacgc cacgcttggc gtccgtcaat aaattacaaa acggacacga agcatcgtgt
     4321 ccctacaagg atttacgatg aaaccgattt tatacttcgc cgattggtgt ccggataccg
     4381 ccccatttgt ggcagaacta gaccgcttgg gcattgaata tgagccgtgc gacatcacca
     4441 aaggaggctc aacacttaaa ccatttttga aactgcgaga cacgcattct gcctttgacc
     4501 acgccaaagc caacggctat attggcattc cggcattgct gatcgaaggc gaaaaagtcg
     4561 tgctggattt ggctgaatta gagggtattt tcggctaaca agcggttgaa tttggcggaa
     4621 atgttgcaaa ggagccaata atgaagacag taatagcaga taattcggct gaatttgtga
     4681 atgaaatttc acaacttatt caatcgagta agcaacgaat gaccgttgcg gttaatgcag
     4741 aattaacctt gctttattgg catatcggaa aacggatcaa tgactatatt ttgcagggtg
     4801 aacgtgcgga atatgggcaa gaagtggtga aaaatcttgc tcaaagtctg acggagcaat
     4861 ttggtaaagg ttggagtaaa cgccatttaa attatacaat gcaatttgct acaactttcc
     4921 ctaatttgga aattgtgcac gcactgcgtg cacaattaag ctggacacat tttaagcaga
     4981 ttattcatat tgatgatcca acaaagcgag ggttctatgc aacaatggct gcacaggagc
     5041 gttggagtac aaggacatta gaagatcgca ttggctcatt attgtttgaa cgcacggcaa
     5101 tttccaaaaa gcccgatgaa accattattg ctgaattgag tttgctacgt gaaaaaggcg
     5161 aatataatca gtcaatggtg ttgaaagatc cctatatttt ggattttctc gaccttaacg
     5221 accgttatat ggaacgtgat ctcgaagatg cgattctacg agagatcgaa cagtttttac
     5281 tggaacttgg ggcgggtttt acctttgtcg cccgccaaaa aaggattcag attgataatg
     5341 atgatttcta tatcgatctg ctgttttata accgtaaact caaacgcctg attgcgattg
     5401 aactaaaaac cgaaagcttc aaacattccc acaaaagtca aatggaactc tatttggcgt
     5461 ggctggcgaa atacgagcaa gaagcagacg aaaacccacc gcttggaatg attctctgca
     5521 ccggtaaaaa gcaggagcaa gtggaattgt tggatttgaa aaattccgat attcatattg
     5581 cggaatatat gaccgtgttg ccgagtaaag cggtattgga acaacggttg catttggcgg
     5641 tggaaagggc gaaagagcgg tttttactaa aatagcaagc ggttaaaatc agcggaaatg
     5701 ttgcaaaatg aaagtatgat ggaaacgatt tggttgcata ttccgttggt gggtggttag
     5761 agattttcaa atctcccccc tccccctctt tggctaaaga gggggcgatc atttagtgag
     5821 taattttaat tcatctgact atttacaatc ttaatgaaga aagatgaatt ataaatttac
     5881 gaagatcaaa ttcccct
//
LOCUS       DANMGB010000147         5727 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.147, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000147 DANMGB010000000
VERSION     DANMGB010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5727
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.147"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            374..1411
                     /gene="rsgA"
                     /locus_tag="PXG19_002075"
     CDS             374..1411
                     /gene="rsgA"
                     /locus_tag="PXG19_002075"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL6067340.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            1408..2007
                     /gene="rnhB"
                     /locus_tag="PXG19_002076"
     CDS             1408..2007
                     /gene="rnhB"
                     /locus_tag="PXG19_002076"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL6067341.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            2020..2379
                     /locus_tag="PXG19_002077"
     CDS             2020..2379
                     /locus_tag="PXG19_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL6067342.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            2382..2753
                     /locus_tag="PXG19_002078"
     CDS             2382..2753
                     /locus_tag="PXG19_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL6067343.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(2788..3417)
                     /locus_tag="PXG19_002079"
     CDS             complement(2788..3417)
                     /locus_tag="PXG19_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6067344.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(3434..3988)
                     /locus_tag="PXG19_002080"
     CDS             complement(3434..3988)
                     /locus_tag="PXG19_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL6067345.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(4158..5663)
                     /locus_tag="PXG19_002081"
     CDS             complement(4158..5663)
                     /locus_tag="PXG19_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL6067346.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
BASE COUNT         1765 a         1219 c         1074 g         1669 t
ORIGIN      
        1 cgtttgatgc ttgcaaatag aaataataaa atatccgcat acttagatgg atagtttaga
       61 atttatttct attcctaaat tttaagtatg atgttgtgtt tgcatattgg tctaggaaac
      121 tagactagag taacgaaagt tacttgtttc acttcctgta tattttgaac cgtattggtt
      181 tataaccgcc cactttgggc ggtttttttc tatgtaaaaa aacagcacaa aacctagatc
      241 gcattctata ttattcgcta cctttattct agcctttctg cttttttatt ctttcacttt
      301 aatctattat aaaaagaggt tttatagtat gctaaagcct atttttcatt tgcaataatt
      361 accgagagtt cttttgagta aaccgaaatt aacccataac caacagcgta gaatccaatc
      421 taaccatcat aagcgtatca acaaaaaaga gattgaatgg caagatgaaa tgttaggaga
      481 aatgcaacag ggcatcgtcg ttactcgcca cgttaaacac gctgatgttg aaaccgcaga
      541 ggggcaaatt ttccgctgta atatccgccg tacattgaaa aatgtagtgg tgggcgatca
      601 ggtttcttgg cgtaaaggta gtgagcaact acaagggatt agtggggtca ttgaagccgt
      661 cttcccacgt aaaaatgaac ttacccgccc cgattattat gacggtatta aggtgatggc
      721 atcgaacatc gatcaaatca ttattgtatc agctgtgcta cctacacttt cgctgaatat
      781 tatcgaccgt tatttagtga tttgcgaaac ggcgaatatt cctgccttaa tcgtgctaaa
      841 caaaattgat ttattaaacg aaagcgaacg gcaagcagtt aaagagcagc tcaaaatcta
      901 tgaagagatt ggctatgaaa ccctatgttt atcggctgat acgggtgaaa atatgcaggc
      961 gttacaccaa tatcttgcta aaggtacgtc tatttttgtc ggacaatccg gcgtggggaa
     1021 atccagccta attaaccaac tgttacctga agtcaatgct ctcactggct cagtgagcga
     1081 taactcaggg ttaggtcagc acaccaccac tgcctctcgc ttataccatt taccgcaagg
     1141 cggacagctg attgactcgc cgggcattcg agaatttggc ttatggcatt tagaacctga
     1201 gcaaatcacc ttaggctatc gagaatttca atcggtttta ggcacgtgca aattccgtga
     1261 ttgcaaacac aaaaccgacc cgggttgtgc cttaagacaa gaggtcgaaa atggcgaaat
     1321 ttctgcaatt cggtttgaaa attaccatcg cttaattgaa agcctgtctg aaaccaaaag
     1381 ccaacgccat ttcagaaaag aagaagtata atgaatgaat ttatttaccc taacgcccga
     1441 ttaatcgccg gtgttgacga agtcggacga ggacctttag tcggagcggt tgtgaccgca
     1501 gccgtgattt tagatccgaa taacccgatt cagggcttaa ccgattccaa aaaattatcc
     1561 gagaaaaaac gccaagcttt ggcagaagag attaaagcca aggctctgag ctggtcgcta
     1621 ggacgtgccg agccgacaga aattgatgag ctgaatattt taaatgcgac aatgttggca
     1681 atgcaacgtg cggttgccgg cttgcatatt cagccggatt ttgtgctaat tgacggcaat
     1741 cgtccgccaa aactgccaat gccggcacaa gcggtggtga aaggagacag cttagtggct
     1801 gaaatcagtg ctgcttcgat tattgccaaa gtcgcccgag atcaagaaat ggacgaatta
     1861 gaccaacaat ttccgcaata cggcttcgca cagcacaaag gctacccgac taaactccat
     1921 tttgaaaaat tagcagaatt tggggcaaca ccttatcatc gtaagagttt tgcccctgta
     1981 agaaaagtat taggtttaat cgattagaag gaaaacacaa tgactacaga gtaccaaaaa
     2041 acgattttca ccaaaatcat caataaagaa attccggcaa atattgtcta tcaagatgaa
     2101 cttgtgaccg catttcgtga tattgctcca caagcaccca cgcatatttt gattattccg
     2161 aataaattta ttccaaccgt caatcacgtg agtaatgaag atgaattagc cctagggcgt
     2221 ttatttacgg tggcggcaaa attagcccaa gaagaaggca ttgccgaaga aggctatcgc
     2281 ttagtgatga attgtaataa aaacggcggg caggaagtgt tccatattca tatgcacttg
     2341 ttaggcggac aaaaactagg acctttagtg gcaaaataac tatgcgtatt tcctactttg
     2401 catttgcaat tttttcgatt tttttgaccg cttgtggtag caaacctgtc agctatttac
     2461 caaccggctc agagcctatt gtcaatattg agtctgacat tgctgaaaag atagagctgg
     2521 aaacgaatag caagcaattt agcaccacaa atttaactga atttccgctt aatcttactt
     2581 ataaattatt ttggtataat aaagatgggg taacacaatc ccataacggt atatcagata
     2641 gtatcggctg gcaacatcta tggttgcaac ctaagcaaaa acagaccatt gcactcatta
     2701 aaccgacgga agaaagccat aattaccgcc tctatttacg aggcgtaaaa tagcaaaaaa
     2761 gcagagccaa ctgctctgct tctttattta tttcaaaaac gggttggtct gtttttcccg
     2821 cccgatagtt gtgtgtggac catgtcccgg tatgatgatg aaatcatcat ctaaatcaaa
     2881 cattttttcc ctgatcgttt ccaataactg gctatggttg cctaaataga gatctgttcg
     2941 acctatgcta ttttggaata aaacatcgcc actaaaagca atacgattgt caaaatcaaa
     3001 aaaaccgata tgacccggag catgacccgg caaatgtcga acggtatagc tcagctcgcc
     3061 gacttcgacc cgatcacctt cctccaacca atgatccggc aaaaagccat ttactggtgg
     3121 taatccaaat tgttggcaca tttccggcaa acgttcaaat aaaggtttat ctgcaagatg
     3181 cgagccgaaa acctctactt gaaaatgctc tctcaacttt tccaccgcca taatatgatc
     3241 taaatgaccg tgcgtaatca ataatttctg aaccttaagc tgctgagatt caacaaattg
     3301 aataatgcct tcggcattat cgccgccatc aataatagcc gcattcttat tttcgtccca
     3361 aatcaccgtg caattttgtt gaaatggact aacaggaata atttgcaaat taaacataaa
     3421 ataagaccgc ttgttagcct ctccaagtgc gaactgggcc agtatctacg tgaacaaagt
     3481 tactacgagg ataataacct acgccaccat tattcaagct ctcagccgct tgttttactt
     3541 tatataacgg cacacctgat acttggaaat ctactgcttg cccaagaata tggtaactat
     3601 ggctggcaac accacggctt ctacgacgaa gtcttgcatt tgtttgtgcg gagcgatagc
     3661 cacttaatac taggatttcc gcattatgga aacctaaacg gcgttgtaat tgattcaatt
     3721 tgacaaataa ttttggatca attgctttaa cttgattgat atgacgatcc cgcattaaat
     3781 agtttaactg gcttaaatcg gttttattta atccacctgc accaaattta gcagtgtaag
     3841 tatcgcctgt attcacatta cgaaaacgta acgcagctgg ggcaggagta gaaagcgctg
     3901 ccattacttg acccggcaga aggctagccc ctaaaacaag tccgccgagt gatagccact
     3961 tacggcgttg aacattaatt tgtttcattt tttcctcata ggttagctaa tgatttatag
     4021 aaaatcactc acaaatgagc gaatttctat acaccatact taaagtaaaa atttacaatc
     4081 gtaaatttat gtaagctata ttttcaaaaa gttccaagaa gatgatatct tcttggaatt
     4141 tatcagaaat agcacgatta aataatgctc tttaattttc cccaattcac agaatgttgt
     4201 gggattttgg catcaaagtt ataaatgtcc ggaagggttt gcacttttcc accttcaacc
     4261 caagccgtca cataatagag ataaaccggg ttatctgaac gaatctgagc cgaggtcgtc
     4321 ttcttactgc ctaagacttg attcttttta tcagatcccc aacccgcttc ttttaataaa
     4381 atggttgcca attcatcaga tttttctaca cggacacaac cagaacttaa cgcacgcccc
     4441 gttttaccaa ataatcctct atttggcgta tcatgcaaat aaattgcatc cgaacttggc
     4501 atattaaatt tataacgtcc taaagcgcta tcatcacctg ctttctggcg aatacggtat
     4561 ggtgaacttt tagcatttaa atattgtgac caatttacgc tacgcggatt aattttattg
     4621 ccactactat caagaatttc gaaactagca cgatctgcat aacctgggtc acgcgctagt
     4681 ttaggaataa tatctttagt cataatacta gtcggtacat tccaaggtgg attcactacc
     4741 acattgctca gcttactata cattaccggt gtacggcgat cttctcgccc aacaatcact
     4801 ttagattgaa gagctaaatt accatcacgg aaataatata attgatagct tgggatattc
     4861 acaaaaattc cattgttaaa acttggaata atacgtaaac gttgagcatt gagcgctaat
     4921 ttatagaaag aagccccatt accgccacca gctacctccg taacagcttt accttttttg
     4981 gctttaggtg ctgaagagcc tcctgccatt gccaatactc tctgtgccgt atcacgatat
     5041 aaatggtttc ttggaacaag gtctgttaca aactgcccag aatcgccttc cctcacggca
     5101 ttagtccatt ggaagatttg ctctgaagag ggcgattttg gtacataact gcctaagtta
     5161 tataaccaat tatttgcatt tttaaacaca tttttgttgt aatacaaata atctaagaag
     5221 ccatcagtta ataaaatatc tctacctaaa ccttccggtt gatttaagat ttgctgcaat
     5281 gccttagctg atttagagga taccccactt actgcaaata atgcatattc tttcaaaaat
     5341 gctttttctg cggctttatc attccacatt gtcgcaaatt cactgtctaa ataaacctta
     5401 gttgttgctt ggctcagcaa taaggcatta ttacctattt cttgcttaat tcttgcttcc
     5461 gcttctgcaa attttcttgc ttgctcttga cgaatttgtt cctgttctaa cgcataatcg
     5521 gcctgtttta ccaattctgc agcacgagcc tgctgagctg caaaacttaa ttgtggtaaa
     5581 atattatctt gtacaacagg ctcagaagcc acctgagcaa ctgtggctgt ttcagccaaa
     5641 gccatgccag aaaacgccac cataataggt aataatttaa aggttttcac ccactcttcc
     5701 tcttaatatt tgcaaattta taaaaaa
//
LOCUS       DANMGB010000148         5722 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.148, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000148 DANMGB010000000
VERSION     DANMGB010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5722
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.148"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            47..3118
                     /gene="fdnG"
                     /locus_tag="PXG19_002082"
     CDS             47..3118
                     /gene="fdnG"
                     /locus_tag="PXG19_002082"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:632..634,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL6067347.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3121..4035
                     /gene="fdxH"
                     /locus_tag="PXG19_002083"
     CDS             3121..4035
                     /gene="fdxH"
                     /locus_tag="PXG19_002083"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL6067348.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4028..4705
                     /locus_tag="PXG19_002084"
     CDS             4028..4705
                     /locus_tag="PXG19_002084"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL6067349.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4761..5678
                     /gene="fdhE"
                     /locus_tag="PXG19_002085"
     CDS             4761..5678
                     /gene="fdhE"
                     /locus_tag="PXG19_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL6067350.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
BASE COUNT         1673 a         1244 c         1337 g         1468 t
ORIGIN      
        1 gatcaaattt tgttttattt ctcacattat gtgatttgga gtgattatgc agatctcaag
       61 acgtaagttc ttcaaggtct gtgcaggtgg tatggcggga acttctgctg caatgttggg
      121 ttttgctcca gcaacagcat tagctgcacc gcgtgagtat aagctcttaa gagcaaaaga
      181 aactcgacaa acctgtactt actgcgcggt aggctgtggc atgattatgt acagcttagg
      241 cggcgaagca atgaacagca aaggaaagtt aattcatatt gagggtgatt ctgaccatcc
      301 agtaagccgt ggggcgttat gtccgaaagg tgcaggggcg ttggactatg ttaatagtga
      361 ccgccgtgtg cattatccgg aagtgcgtga agccggttca agtgagtgga aacgcatttc
      421 ttggcacgag gcaattgaac gtattgcccg ccatatgaaa aatgaccgtg atgagaactt
      481 cgtcacccac aatgaagcag ggctggaagt aaaccgttgg atgacggcag gtttcttggc
      541 aggctcggcg tgtagtaacg aaaccggtat cgtcacccag aagtttatcc gctctctcgg
      601 tatgattttt accgacaacc aagcgagtat ctgacacgga ccaacggtag caagtcttgc
      661 tccatcattt ggtcgcggtg cgatgaccaa ccactgggtt gatattaaaa actccgattt
      721 agtgatcgtt atgggcggta acgcagccga agctcaccct gtgggtttcc gttgggcagt
      781 tgaagcgaaa aaacagaacg gtgcgaagtt aatggtggta gatccacgct ttaaccgtag
      841 tgctgcggtg gcggatattt atataccatt gcgtccgggt acggacattg cgttcttgtt
      901 aggtgcggta aactacctgc ttaaaaacga caaaattcaa cacgagtatg tgaagcatta
      961 caccaatgcc acattcttac tcaacgaagg gtttaaattc gaagacgggc ttttcaccgg
     1021 ctacgatgaa gccactcgta cctataaaga caaatccact tgggcttatc agttagatga
     1081 acagggtcag ccgaaacggg atatgacaat gcaagatcca cgttgtgtga tcaatatgct
     1141 caaagaccac gtttcccgct atacgcctga aatggtagaa cgcattaccg gtacgccaca
     1201 aaaagatttc ctgattttct gtgaagagat tgcgaaaacc tcagcgccgg ataaagccgc
     1261 caccttcctc tatgccttag gttggacaca acacaccgtg ggcgcacaaa acattcgctc
     1321 aatggcgatc attcagttgc tgtgcggtaa cattggtgtc tccggcggtg gggtaaacgc
     1381 actgcgtggt cactctaatg tacaagggat taccgaccta ggcttgttcc cacatatgtt
     1441 gccgggctat atccgcctgc caaccgaagc ggacgcaacc ttagaaagct acttaaatgc
     1501 gattgcaccg aaaaccttag tggcagggca agtaaactac gggcaaaaca acccgaaatt
     1561 cgctgtgagt atgctcaaaa ccttctacgg cgataaggca accaaagaga acgagttcgg
     1621 ctatcactat ttaccgaaat acccgaaagg cggtacagat cacttccgct ttatcgaaca
     1681 gatgtatcaa ggcaaagtga acggctattt ctgccaaggt atgaacccga ttgcctctta
     1741 ccctaactcg cagaagttaa ttaaagcgtt gagcaatttg aaatatttag tcatttttga
     1801 cccgcttatt accgatactt ccgagttctg gaaaaatcac ggtgagttca acaatgtgaa
     1861 cccgtctgaa attcaaaccg aagtgttccg cttgccgacc acttgctttg cggaagaaga
     1921 tggttcaatt gcgaactccg gtcgctggtt acaatggcac tggaaagcag cagacgcacc
     1981 acacgaggca aaaccggacg tggatattct gtctgaaatc cgtgccgaac tgatccacct
     2041 ttatcataaa gaaggcggaa aagcaccgct tgaaccgtta gaagcgatga cgtggaacta
     2101 tatgaacccg ttagaaccga agccggaaga gatcgccaaa gagaacaacg gttatgcatt
     2161 ggaagatctg aaagatgcag acggcaacat catcgtgaaa aaaggcgaac tattatccag
     2221 ctttacacaa atgcgtgatg acggtacaac ctccggtggt tgttggatct actgcggtca
     2281 atggactccg aaaggtaacc aaatggcgaa ccgtgataac tccgacccat caggcttagg
     2341 taacacctta ggctgggcat tctcgtggcc ggtaaaccgc cgtattctat acaaccgtgc
     2401 atcggcagat ttaagcggta aaccgtggaa cccgaaacgc cagctagtta aatggaacgg
     2461 taaaaactgg aactatgtgg acgttgccga ttacggtaca gcaccaccaa atagccctgt
     2521 gacaccattt attatgcaac cggaaggggt atccggcttg ttcgtgcgtg aacgtatgca
     2581 agacggtcca ttccctgagc attatgaacc gtttgaaacg ccaatcggca cgaacccgtt
     2641 acacccgaat gtaatcagca gtccggtggc acgcattctg ccgagcgata aagaggattt
     2701 aggcaccagc gatgagttcc catatgtcgg tacaacttac cgcttaaccg aacacttcca
     2761 ctactggacg aaaaatgccc tgattaacgt cattgctcaa ccggagcaat tcgtggaaat
     2821 cggcgagaaa cttgccgaag agaaaggcat taaaaatggc gacaaagtac gtgtttggtc
     2881 taaacgtggc gaaattaaag ccgttgccgt ggtgactaaa cgtatccgtt cattggtctc
     2941 tgacggcaaa ccaatccaca ctatcggtgt gccgatccac tggggctttg cggctacaac
     3001 cggtgcgaaa aaaggctatt ttgccaataa cttaaccgtg cgaacaggtg aaccaaactc
     3061 aaatacacct gaatcgaaat gtatgttatt aaacattgag aaaattgtgg gggcttaaca
     3121 atgagtacag ttcaaactca aaacattatt aaaatctccg caacctcggc gctgacaccg
     3181 gcgccgcagg ctcgttcgca ccaagtggaa gtagcgaaac tgatcgatgt caccacttgt
     3241 atcggctgta aagcctgtca agtgggctgt tcagaatgga atgacattcg ctccgatgta
     3301 aatgcaaact gtgtcggcgt gtacgacaac cctgcggatc taaatgcgaa agcgtggaca
     3361 gtaatgcgct ttaacgaagt agaagaaaac gaccgtttag aatggttgat ccgtaaagac
     3421 ggctgtatgc actgtgccga gccgggttgc ttgaaatctt gcccgtcacc gggtgcgatt
     3481 atccaatacg ccaacggtat tgttgatttc caatccgaca aatgtatcgg ttgtggctac
     3541 tgtatcgcag gttgtccgtt caacattcct cgtatgaatc cggacgataa ccgtgtttac
     3601 aaatgcaccc tgtgtgtgga tcgtgtcaat gttggtcaag aaccggcttg cgtgaaaacc
     3661 tgcccgaccg gtgcaatccg cttcggtagc aaagaagaga tgaagttcta tgcagaacaa
     3721 cgcattgctg atctgaaatc tcgtggctat gaaaatgccg gcttgtacga ccctgaaggc
     3781 gttggcggta cgcacgtaat gtatgtatta catcatgccg acaaaccgga gctttattca
     3841 ggcttaccga aagatccgaa gattgatacc acagtaacct tatggaaaga cgttttaaaa
     3901 cctgtggcgg cagtagcgtt gggtggttta gctttagcag aagttgcaca ctatattacc
     3961 gttgggccaa acgttgagga agatcttgaa gaacaccacc atagcgaaaa tgcagaagga
     4021 ggcaaacatg agtaagaaat ttgaaatcac gaacgatacc aaaatcgttc gtcataagcc
     4081 cttagctcgt gttagccact ggttcttagt aatctctttt tttatgacga tgtttaccgg
     4141 tgttgccttc ttcttccctg actttgcttg gcttaccgag attttaggta ctccacagat
     4201 tgcccgtgca gtccacccat ttaccgggat tataatgttt attgcattta ttattatggc
     4261 gttaatatat tggcaccata atatccctga gaaaaatgat attcgttggg caaaaggcat
     4321 tgttgaagta ctaaaaggta atgagcataa ggtttccgat aatggaaaat acaatttggg
     4381 tcaaaaatta ctcttttgga ctcttattct tgcgatgttc actcttttag ccacagggat
     4441 tattatgtgg agacaatttt tctctcacta cttctcgatt cctatgctaa gaattgcaat
     4501 tttacttcat tcagcaagtg catttatgct atttaccgga attttagtac atatgtatat
     4561 ggcattctgg gtaaaaggct caatcagagg tatggttgag ggttgggtta ccgttcgctg
     4621 ggcaaaaaaa caccacccaa gatggtaccg tgaagaagtg ctacctgaat tagaaagaca
     4681 agtagctgag caaaataata aataacctca agtgcggtat tattaccgca cttttatttt
     4741 attggtttaa aaagaatatt atgagtatca aaatactacc tcaagatgat atcaaacaag
     4801 cagctagttc atttcagcaa cccgagctct tatttgctaa tcccaaaaat ctgtatttac
     4861 gccgcgctaa gcggctacgt gaattagcca agcaaaaccc attcggtgaa tatatggagt
     4921 tttctgctaa cctcgtggac attcaattag cattacttga aagccagcca attgcagatt
     4981 attctcaaaa aataaccgct tgtgtagagc gcacgcaagg agaaacaccg ctaaatgcac
     5041 agaattttca gcgtactgat gaatggcgga cactactctt agccattatt gagaaattca
     5101 agccttatgc aaatgatact gttcttgcaa caattgaagt attggaaaag gcagctaagt
     5161 cagagctaga cacacttgct gataatttgc taaatgaacg atacgaactt gtgggcgcag
     5221 ataaagctgt ctttatttgg gctgctctct cactttactg ggtacaatta gctcaacaat
     5281 taccacgtaa ttctcgtgca gaaataggcc ataaacattt atgtccggta tgtaactcag
     5341 cacctgtaag cagtgtgatt catttcggtg aagctcaagg gttacgttat ctacactgtt
     5401 ctttatgtga aagtgaatgg catgtagtac gtacaaagtg tacaaactgt gatgaaaccg
     5461 gcaaactgga ttattggagc ttagatacag tagaagcagc agttaaagct gaaagttgtg
     5521 gcgactgcca ttcctactta aaagtactct atcaagataa agacgtgaat gtggaacctg
     5581 ttgctgatga tttagcaact ctattcttag attccgagat ggaacaaaaa ggtctttcaa
     5641 gaagtgggat aaatccattt ttatttcaag tagagtaact catttacaac aaaaacggag
     5701 cataacgctc cgttttttat ta
//
LOCUS       DANMGB010000149         5694 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.149, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000149 DANMGB010000000
VERSION     DANMGB010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5694
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.149"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            1..495
                     /locus_tag="PXG19_002086"
     CDS             1..495
                     /locus_tag="PXG19_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6067351.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            complement(549..1418)
                     /gene="htpX"
                     /locus_tag="PXG19_002087"
     CDS             complement(549..1418)
                     /gene="htpX"
                     /locus_tag="PXG19_002087"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL6067352.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(1506..2588)
                     /gene="dinB"
                     /locus_tag="PXG19_002088"
     CDS             complement(1506..2588)
                     /gene="dinB"
                     /locus_tag="PXG19_002088"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL6067353.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            2711..3622
                     /locus_tag="PXG19_002089"
     CDS             2711..3622
                     /locus_tag="PXG19_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL6067354.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            3728..5494
                     /gene="aspS"
                     /locus_tag="PXG19_002090"
     CDS             3728..5494
                     /gene="aspS"
                     /locus_tag="PXG19_002090"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL6067355.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
BASE COUNT         1600 a         1237 c         1150 g         1707 t
ORIGIN      
        1 atgacagaat atctcacttc ctttttcagt ttattctttt ccgaacaaaa tcaactcttt
       61 actatgtttc tgagtggatt tctaagcgct accctcttac ccggaaattc tgaaattatc
      121 ttcactacct tagcaagcca acatctcatc acttatggct ctttatcctc attttcactg
      181 ttcaatttac tcttggttgc aaccttaggt aatagtttag gtagcataac cacttatgcg
      241 atagggctat tactccctcg cccacagaat actaccaatc gttattcaca atgggcatta
      301 gccaaaagtg aaaaatatgg cgtgttagtc ttgcttttta gttggttacc gattgtaggc
      361 gatattttct gtggcattgc cggctggcta cggtttagcc tttggcaaag cattctcttt
      421 attgtgattg ggaaattgtt acgttatctg tttttgctgg caactctcta ttcggtgtta
      481 ccgcatattt tatagaaaac aaaagcggct gttttgcaaa aaattttaca aaaacaaccg
      541 cttgtgcttt ataagtttct taacgcttca atacgttttt ctaacggagg gtggctcata
      601 aacaactctt taccacggct accgttaatc ataaaggcag caagagagcc ttccatttct
      661 tgcggttcgt gaacacgttg caagcgttgt aatgccgcaa tcattttctc tttaccgact
      721 aattgagcag agcctgcatc tgcacgaaat tcacgttggc gagagaacca cattgcaatc
      781 attgttgcta acacaccaaa caccatctgt aacacaatat ctactaccca gaacaccagc
      841 gtattggtgc ttgaattgcc attttcgtca cgtgaacttg ccgccattgt cgaaataata
      901 cgagctaaga aaatgacgaa agtatttaac acgccttgta ataaagtcat tgtaaccata
      961 tcgccattcg caatgtgcgc cacttcgtgt gctactaccg cttcagcttc gtctttagtc
     1021 attgaattca gcaagccggt gctgactgca actaaagaat tacttttcgt tgctcctgta
     1081 gcgaatgcat ttacatcagc cgaatggtaa atcgcaatgt ccggcattgg gatattcgct
     1141 tgctgagcct gacgttgtac agtgttgaat aaccattgct ccgcttcgtt acgaggctgt
     1201 gtaatcacct ctgccccaac cgaacgcaat gccattgatt tcgacataaa tagcgaaatt
     1261 aaagacccac tgaaaccgaa gactaacgaa agcaccaaaa taccggcagt gctttgccct
     1321 tgaatgccgg tcactttaaa aataaggttt aatacgatcc ctaaaacaaa ggtaatcgct
     1381 aagttagtta ataaaaatag aatgacacgt tttgccataa tgttttcaat ctccaaaaat
     1441 atagatgcaa tgattgcacg aataagataa tgactttagc cttaatttca agtcattatt
     1501 tacaattatt cccacaaatt taactgttta ttcacttttt tctcgggaaa gtgaacactt
     1561 agaccgatta atcgcacctt tcgttccttt cttcgggtaa aaatttgctg tagcaactcg
     1621 ccaaatcgct catacgcaaa gccatcggtg gttcgttcaa gcgtggtttg gctaaaatca
     1681 tcaaacttga gtttaatgcc taacttttta aactcagtta atggcgtatc gccccagttt
     1741 cgttgcaacc gaaaaaccag tttgtcgaat aaatctgcca caatcttttc cgcttgctca
     1801 agggttgaaa tatcgtgcaa cagcgtattt tccaccgcca gcgattttct ttcacgataa
     1861 ggctctaccg ctcgttcatc aataccgtgg ctaaaatccc aaagccgttg cccgaatttg
     1921 ccaaacgctc ggtaaataac cgctttttct gcttgctgaa tatcaccaca ggtttcaaag
     1981 ccaagctgtt ttaatttttc attggttact ttccccacac ccggaatttt tgcaagcggt
     2041 agatttttca caaaattttg cacatcatca ggcgtaatca cacattgtcc gttaggtttg
     2101 ttttgatcgg aggtaatttt tgctaaaaat ttaagcggag caactcctgc cgaggcagtt
     2161 aaatgcaatt cattgaaaat atcattgcgg attgcttgag caatccaagt ggcggagcca
     2221 aaatagcgtt cgcattcggt tacatctaaa taggcttcat caagcgacaa ggcttcaatc
     2281 acatccgtat agcgatgaaa aatttcgtga atttgagcgg aaaccgattt atacaacgcc
     2341 atattcaccg gcaataaaat taaattcggg catttcttca acgcagttgc cgttggcatt
     2401 gcactgtgta agccgaattt tcgagcctcg taattacagg ttgtcagcac acctcgttga
     2461 ttagcattgc cgcccaccgc caccggctta ccgaccaacg ccgggttttc ccgcatttcg
     2521 accgctgcat aaaaacaatc catatcaata tggataattt ttcgcttatg tttagcttga
     2581 atcgacattt gcaatatttt ccccaaaaac gaccgcttgc aacacaaata actgtatata
     2641 aaaacagttt tattttatgc ccttattgtt agaatttcaa gtttaaaaat agcgataaaa
     2701 aggataaaaa atgctctacg gtttagccat tgtgctgatt ccactttttc tcggttactt
     2761 aataaccctc aaaaaccacc gccatatggc aatagtaaac agagtggtca gcctctgcct
     2821 ttacttgatt ttattagtga tggggatttc tctcggacaa attgataaca ttctcaccga
     2881 actgccacag attggcggta cggcgtttag tttagtggtg attttactcc tttcaaacat
     2941 tatcggcttg gtgatttacg acaaattaca accgatgaaa agagacaaag tcaatcaaga
     3001 tcaacttccc tcccgcctgc atttgttgat tgattccttt aaattaatcg gcattacctt
     3061 attaggcggg atcatcggct atttcaccaa aggcgtggtg gatttccctc tgcacgccag
     3121 cacctatgtg ttagaagtga tgattttcgg ggtggggatt caactgcgaa acagcggtat
     3181 tcccctgcgt gaagtgttct ttaacaagcg ggggatttat acctcgattg taatggtggc
     3241 aagttccctg attggtggcg tgatttcggc attcacctta gatttatccc ttgctaaagg
     3301 cttaaccttt gcctctgcat tcggttggta ttccctttca agcgtattgg taaacgatgc
     3361 ttggggcccg atttacggca gtattgcctt ttttaacgac atctcgcgtg aaattttatg
     3421 cctgttttta gtaccactgt ttatgcgtca atttccgtcc accgcagtcg gcattggcgg
     3481 agcgacttca ttagattgta tgctccctat tattcaaaaa tcgggcggta ttcaaattgt
     3541 gccgctggca atcagcttcg gttttattgt taatttagcc gctccattgt tattagccgt
     3601 ttttattggg ctggaaggat aaatcaccgc ttgtttgctt ttatttatcc atcttcgctg
     3661 aattttccgc tataatcctt aagttttccc cgaaacttgg gatatttatt ttcaaaagga
     3721 taattttatg atgcgttctc actactgcgg tgcattaaac cgctcacacc ttggacaaac
     3781 agttacctta agcggttggg ttcatcgtgt tcgtaacctt ggtcgtttta tttttatgca
     3841 aattcgtgat cgtgaaggca ttgtgcaggt gtttttcgat gagaaagatg aagcactttt
     3901 caagcaagca tcggccttac gttctgaggc gtgcgtgcaa attcaaggtg aagtgattgc
     3961 ccgtgatgaa tcgcaaatca ataaagagat ggcaaccggt gaaattgaag tgttagtaaa
     4021 aaatttagtg gtgtataaca acgctgaagt attgccgtta gacttcaatc aaaacaatac
     4081 cgaagaacag cgtttaaaat accgctattt ggatttacgc cgccctgaaa tggcagaaaa
     4141 gctcaaaacc cgtgctaaaa tcaccagttt tgtccgccgt tttatggacg ataacggttt
     4201 cttagacatt gaaaccccga tgctgaccaa agctactcct gaaggtgcga gagattacct
     4261 cgtgccaagc cgtgtgcata aaggcaaatt ctatgctctg ccacaatcac ctcagctatt
     4321 taaacagttg ctaatgatgt cgggcttcga ccgttattac caaatcgtga aatgtttccg
     4381 tgatgaagat ttgcgtgccg accgccagcc ggaatttacc caaatagacg tggaaaccag
     4441 ctttatgact gccgaagaag tgcgtgcatt aatggaagcg atgatccacg gcttatggaa
     4501 agagacctta ggcgttgatc tcggtaaatt cccaatgatg acgtggaatg aagcaatgac
     4561 ccgtttcggt tcagacaaac cggatttgcg taacccactg gaaatggttg atgtggcaga
     4621 tattttaaaa tcggttgatt tcaaagtatt tagcggtccg gcgaatgatc cgaaagggcg
     4681 tgtagtggca cttcgtgtgc caaacggtgc agctctaacc cgtaaaaata ttgatgacta
     4741 cacccaattt gtcggcattt atggggcaaa aggcttggct tggttaaaag tgaatgatat
     4801 gaacacaggt ttagaaggca ttcaaagccc ggttgcaaaa ttcttaaatg aagaagtgct
     4861 aaaagcctta gttaaacgct taaacttgca aaaagacgac attgtattct tcggtgcgga
     4921 taactggcac gttgcgacta acgccatcgg tgcgttacgc ttaaaagtgg ggaacgattt
     4981 aggcttaacc gataccacag cgtggaaacc gttatgggtg attgatttcc caatgtttga
     5041 acgtgatgat gaaggcaact tatcggcaat gcaccacccg ttcacttcac cgaaagaatt
     5101 atcgccggaa gaattagtgc aagatccgga aaatgcggtg gcaaacgctt acgatatggt
     5161 aattaacggc tacgaagtgg gcggtggctc ggtacgtatt ttcagccagc agatgcaaca
     5221 aaccgtgttc agcattttag gcattaacga agaagagcaa aaagagaaat tcggtttctt
     5281 attagatgcg ttaaaattcg gtactccgcc acacgcaggc ttagccttcg gtttagaccg
     5341 cttaacgatg ttgattacag gaactgataa cattcgtgat gtcatcgctt tcccgaaaac
     5401 caccgctgca gcgtgtttaa tgacagaagc accaagctat gcgaatccga aagcgttgga
     5461 agagttagca atccgtacaa ttccacaaga gtaatcggta ggggcgaaac atttttcgcc
     5521 ctttttattt aacaagcggt cgaaaaagtg aaaaactttg caaaagtaat aatcgcaaaa
     5581 ttattctcta aataacataa taaagactct tttctcttct ctatgttact actaaatatc
     5641 ccctattatt ttaattatta ccttatttgg gtattgagca gatttatgcc gaac
//
LOCUS       DANMGB010000150         5640 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.150, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000150 DANMGB010000000
VERSION     DANMGB010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5640
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.150"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            45..734
                     /locus_tag="PXG19_002091"
     CDS             45..734
                     /locus_tag="PXG19_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL6067356.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            744..1646
                     /locus_tag="PXG19_002092"
     CDS             744..1646
                     /locus_tag="PXG19_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL6067357.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            1671..2549
                     /gene="nanA"
                     /locus_tag="PXG19_002093"
     CDS             1671..2549
                     /gene="nanA"
                     /locus_tag="PXG19_002093"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL6067358.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(2610..2816)
                     /locus_tag="PXG19_002094"
     CDS             complement(2610..2816)
                     /locus_tag="PXG19_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067359.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(2774..3412)
                     /locus_tag="PXG19_002095"
     CDS             complement(2774..3412)
                     /locus_tag="PXG19_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067360.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(3654..4373)
                     /locus_tag="PXG19_002096"
     CDS             complement(3654..4373)
                     /locus_tag="PXG19_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067361.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            4550..4828
                     /locus_tag="PXG19_002097"
     CDS             4550..4828
                     /locus_tag="PXG19_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067362.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            4873..>5640
                     /locus_tag="PXG19_002098"
     CDS             4873..>5640
                     /locus_tag="PXG19_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6067363.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         1681 a         1146 c         1237 g         1576 t
ORIGIN      
        1 atctagtcca ttgactacct tttgaacata aaaaaggaac tgttatgtca acactatctc
       61 gtgattctat tttaagtcaa attcaaaacg ggctgattgc ctcctgccaa ccggttgatg
      121 acggccccat ggataaacct gaaattgtcg ccgcaatggc agcagcctct gtgattggtg
      181 gtgctaaagg cattcgcatt gaaggtgtcg ataatttaaa agccgctcgt gcggcagtga
      241 atgtgccgat tatcggcatt gtaaaacgtg atttgccaga ttcccctgtg cgtattacgc
      301 catttttaga agatattgat gccttagccg aagccggtgc cgatattatt gcggtggacg
      361 gcacattccg cacccgcccg gtcagcattg aagaggcggt aaaacgcatt cacgaaaaag
      421 gttgcttggc aatggcggat tgctccaccc ttgaagaagg tttacattgc caacaattag
      481 gctttgatat tgtgggtagt acaatgtctg gctacaccgg tggcgaaatg cctgatgagc
      541 cggactatca attagtgaaa gatttaaaag ctgccggctg taatgttatg gcggaaggtc
      601 gctacaacac gcctgaactg gcaaaaacgg cgattgaaat cggggcggat tacgttaccg
      661 ttggatcggc attgacccgc ttagagcata ttgtgagctg gtttgccgac tctgtaaaat
      721 cggctcaaaa ataggagctg cttatgcgtt gtttagcaat agacatcggt ggcacgaaaa
      781 ttgccacggc aattgtgcaa cacaatcaag tgtcacaacg ccaacaaatt cagaccccga
      841 ctgataaacc acaagctgat caggcaggca gtttgcatca agcgattggt gagataatgc
      901 aacattatca agggcaattt gattttgtgg cagttgcctc aacaggcatt atcaataaag
      961 gggtgcttac cgcattaaat cctaaaaatt taggcggatt ggcagaattt ccgttgaaac
     1021 aaagcattga aaaacatacc gataagccga ttgcattatt aaatgacgtg caagcagcgg
     1081 tgtgtgccga atatttaaat gaagaccaac aagcggtcaa aaattttgta tttattaccg
     1141 tttccaccgg cgtaggcggc ggcattattt taaacggcga actgcaaatc ggcagtaacg
     1201 gcattgcagg acatatcggg catactctag ccgatccgaa cgggcctctc tgtggttgtg
     1261 gacgagtcgg ctgtgtcgaa gcagtcgcag cagggcgtgc aatagaggca gtttccagcc
     1321 aatgggaaaa gccttgttca ccgaaagagg tgttcgagcg attccgccaa ggcaacccac
     1381 aagcggtcga attagtacaa aaatctgcaa aagcgattgc taatttaatt gcagatttaa
     1441 aaatcagttt agatatacaa aaagtggtgt taggtggcag tgtgggctta gcggaagggt
     1501 atttaccgca ggtgtccaac tatttagctg aaatgccgag cgtatatcat tgcgtattgg
     1561 aaaatgctct atccgggcaa gatgccggct taatcggtgc ggcttggtgg gcggaaaacc
     1621 aacttaatca aggttttact ctttaacaaa ttctaactcc ggagatccaa atgaaaaact
     1681 taaaaggtat ttttagtgcg ttactcgtct ctttcaacga agacggcacc atcaacgaaa
     1741 aaggcttacg ccaaattatc cgccacaaca tcgacaaaat gaaagtggac ggtttatatg
     1801 tcggcggttc aaccggtgaa aactttatgc tttctaccga agagaaaaaa gaaattttcc
     1861 gcattgccaa agacgaagcg aaagatgaaa tcgcccttat cgcccaagtc ggtagcgtaa
     1921 acttaaaaga ggcggtagaa ctgggtaaat atgccacaga attaggctac gacagcttat
     1981 ctgcggtcac accgttctac tacaaattca gcttcccgga aatcaaaaat ttctacgaaa
     2041 ccattattcg tgaaaccggc aacaaaatga ttgtttactc cattccgttc ttaaccggcg
     2101 taaacatcgg tgtgagccaa ttcgctgaat tatttgaaaa cgaaaaaatc atcggtgtaa
     2161 aattcactgc cggcgatttc tacctgttag agcgtttacg caaagcgttc ccgaaccact
     2221 taatctacgc aggtttcgat gaaatgatgc taccggcaac ggtattaggt gtggacggtg
     2281 caatcggctc aaccttcaac gtaaacggta ttcgtgcaag acaaatcttt gaattagccc
     2341 aacaaggcaa aatcaaagaa gcatttgaaa tccaaaatgt aaccaacgat ttaatcgaag
     2401 gcattttagg caacggttta taccaaacca tcaaaggctt attggagtta gaaggtgtgc
     2461 aagcaggtta ctgccgtgag ccgatgacga aagaacaaac tccggcacaa aaagaagtga
     2521 ccaaacagtt aaaagctaaa ttcttgtaat ttaagttgca aaaggctaaa cgaaaatcac
     2581 cgcttgtagt aacaagcggt gattttttct caacgacttg caattaatga agccattctg
     2641 ctttttctac cacggtgtaa cgtgtcacca ttatatttta atcgcacttt ttcttggcga
     2701 gtattttctg atttcaactc tctacctata tcataaaacc ctgtactcca gatattttga
     2761 gtaatatccg cttttacaat aatatcattg aagccgttgg tctgtttgtt atccatttgc
     2821 aataccaagt ttgtgtttcc gttttggttt ctttatcatc taaaatagac caaaaagtca
     2881 tcgggtaatc aaaaacaagt tttaactttt ctttttccgg cacaaataac atcaaatgat
     2941 catttgcaga atactcagga gcacttggac cacgagcagc attattaaac ctcacgccga
     3001 aagctcttac tttgtcgttt agaatataac gggcggtatc aattttaaga ctatctgcat
     3061 tcacatcgat agaggcatcg atctccatat cctgctccca cgattgcaat atcgcattat
     3121 cattcacacg agcaacaaaa agcgtccact taggtgtgtt ttcgtcgttt tgataatttt
     3181 ctttgctgta tttaggctct attaccgcat aactcactaa ggtttccgtt gaattgttag
     3241 gagctgtttt acaggcagaa gctaaagtac gagcagaaag tttctcttga gaaatcttaa
     3301 agtaatgagc aataatttga tgttgttgct cagcacaaac ctgtgtgtta ttaccttcat
     3361 ctgcttgagt tgcaagcgta agtaaaagaa ctaagaggag tatctttttc atatagattt
     3421 atccgtatag aaagataact cattctatgg ggtactgact ctttttgcat agagagaaag
     3481 aaaaaaattt ggtcggaaaa ataacggcga gcctagcgaa aacaagggtt cgccgtaatt
     3541 ttatggggga agctatgtaa aaaacaaaat gagcaggatt agaaaaaaat gagcagtttt
     3601 tgcgatattt tttgcatagg tttgatcggt tttaaaacta ttttaaatct gttttaaact
     3661 aaagagtgtc cgatgtggac tacctgcccg atgatttgga ggttttgagc ttcttcggcg
     3721 gtaatctgta ttgggcggta ggactcgtta tcgctaatta attcaatata gtcccattct
     3781 tttctaatcc gtttaaccca tacgctttcc ccattctgca caagataaat cttatcatca
     3841 ccacgaggct ctcgtttgct gaaatctacc agcatttggt cactgtctgc aatggtaggg
     3901 tgcattgatg ttccatttgc ccaaaacacg ccgcagttgt gggcttttac gccgaggctt
     3961 tgcagcaggc tgtcggcgta aggttcttgc ccgtctggct tcgttacgcc ctcgttaaag
     4021 ctgccaaagc ctgctgaaac gttgattgtt ctgaagctgt taatcattga aacaatatca
     4081 tcagccattt tttctagtcg ctcaaactct cttgccacaa tactggtatt ctctgattgt
     4141 ggtttgcttt ccttacctgt tgccagccat tcaaggctca catttgacac ctctgctatt
     4201 tttacaagat ttgaacgaga tggatctgcc tctcctttta cccacctaga tagtgatgct
     4261 tgggctaccc ccactgctct tgcaaactca ctgtaattgt ccttaaagct attttttgca
     4321 atccatttca ttctttctga gaagctctca tcgtaaatgt ttggtttact catcttttac
     4381 gtttccatta ataaagtttt actcgtaaaa catactcata aaccattgat ttttaagtta
     4441 tttatgaata aagcaaaaat attttagatg tttttatgtt ttacggttga tttgtttaaa
     4501 gttttacggt taaatacacg catcaaatag ataaaaagag gtgtatcgaa tgagtgtatt
     4561 aaacgatgtt aaaaaaaccg cacagagaga ttggcataaa gccgatattc ttgcggaact
     4621 tcgtaaaaaa ggttggtcac ttcgttcttt ggctaaagca ggcaatgtta gccataacac
     4681 gctgaagtct gttttagaca agccttaccc caaaatggaa cgcttagttg caaatgccat
     4741 aggggttgcc cctgaagtga tttgggctgg gcgaacagca gaacgcattg aacgtaatcg
     4801 gcgaccaact ttaactaata agttttaatc ataaatgatc tttaacgtaa aagatatagg
     4861 agaagaacat ttatgagcga attaagttta aaaacgcact attcagtggc tgaattgtta
     4921 agttttaagt tatctagcct accaagtgct cataaaaatg tgcttgagaa agcaataagg
     4981 gaaaactggc aatctcaaaa acgcaaaggc agaggcggcg gggttgaata tgaattaatc
     5041 agtttaccca ccgaagtcca acaggaaatc cgcaccaagt tactcaaact tcttcctgct
     5101 gaaatcagca aaggcgaatt gagtgtagtg cgacaaaaca ttgatttgga gcagataacc
     5161 gataaacaac tttctacggc agatgctcgc attatggtgg tgcggtggtt cttgatgcag
     5221 gaagtgcagt tggggctaag ccgcacaaaa acgctagacc aagtcattgc agcggtggca
     5281 agcagtgaaa ttcctgctga aatttgcaaa gcgattatgg cgggcaatag taaagccggt
     5341 ggaaagttaa agctatctaa acgcaccttg catagttggg tgctggcgta tgaggcaggc
     5401 gaaaattcag cggaacggtt aaaacagatg ataccgctga aaacacaaaa acgtgccgtg
     5461 cccgagcggt gtggttggtt gcaagccttt ctgccgtttt atcaaacctt tagcaatgtg
     5521 gcactcacac aggcttatgc tcaatttgca atgcagtatg agggcgaaga tttacctaca
     5581 gagagccaag ttcggtatgc cttgaagcag ttgcccgatt atgtggtgca acaagggcgg
//
LOCUS       DANMGB010000151         5543 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.151, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000151 DANMGB010000000
VERSION     DANMGB010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5543
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.151"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            60..578
                     /gene="hutZ"
                     /locus_tag="PXG19_002099"
     CDS             60..578
                     /gene="hutZ"
                     /locus_tag="PXG19_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL6067364.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            728..3340
                     /gene="pepN"
                     /locus_tag="PXG19_002100"
     CDS             728..3340
                     /gene="pepN"
                     /locus_tag="PXG19_002100"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL6067365.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(3400..3672)
                     /locus_tag="PXG19_002101"
     CDS             complement(3400..3672)
                     /locus_tag="PXG19_002101"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL6067366.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(3726..5360)
                     /locus_tag="PXG19_002102"
     CDS             complement(3726..5360)
                     /locus_tag="PXG19_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL6067367.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         1626 a         1184 c         1097 g         1636 t
ORIGIN      
        1 ttgaaagttt tcactcttta tagtaatcta aaaaaacact atttaaattg aggtatttta
       61 tgacaaccaa ccgtcaagag gtcttacaaa accgtttagg tccagaaatt gaagaattaa
      121 aacaacaaat caaaactata atgcttgcaa ccatagataa agatggtgta ccgaatgtga
      181 gctatgcccc ttttgtaatt aataacggcg aatatcaagt cttaatcact actattgccc
      241 gtcacgctcg taatttacaa gaggtgccaa aagtctcttt aatgctaatt gaggatgaaa
      301 gtaagagccg tcaaattttt gcccgtcgtc gcttaacctt tgacgcaaca gtgcgaatga
      361 ttgaacgtac tgatgaggaa tggaataata gcattgcagc acttaaagct cgtcacggcg
      421 atttagttga tgaactgtca aatatgcaag atttcaagct ctttagcttt aagccaacgg
      481 caggcttatt tgtaaaagga tttggtaaag cctttgatgt tggtgttgat gacttaatta
      541 atgtcgttca tttagaccaa ggccaccaaa ctgcctaatt gcgaaataaa ctcacggcta
      601 taaataatcc tatttatagc cgtttttatt gcgacaagcg gtcaaatttt ttggaaaatt
      661 taccgctatt ttagtacaat aacgacacta ttctatgagc taaacgcaac taaaaaaagg
      721 aaatcctatg caacctaaag cgaaactcag aaaagattat cgagctcccg atttcactat
      781 tactgatatt tatcttgact tccaacttga cccagatcgc acttttgtca cctcaaaact
      841 aactgtcgtg cgtaaaaatc ctgaggcgac aacacttcgt ttagacggtc atagtttcga
      901 tttcctttcg cttaaatata acggcgagcc gttttccgcc tttcaaaaag atgatgaatc
      961 tttaacctta aatttagccg atgtgcctgc cgagcggttc gagcttgaaa ttgaaaccgc
     1021 attaaatccg gcacaaaaca cctcgttaca aggtttgtat aaatcgggcg acgggttttg
     1081 cacccagtgt gaggctgaag gtttccgcca gattacctat atgctcgacc gccctgatgt
     1141 acttgcaaaa tatacgacaa aaatcaccgc tagtaagagc aaatacccgt atctgctttc
     1201 taacggcaac cacattgccc aaggcgactt gcacgatggc agacactggg tggaatggca
     1261 agatccgttc tttaaaccaa gctatttatt tgccttggtt gcgggggatt ttgacttact
     1321 ccaagataaa ttcatcacca aaagcggacg tgaagtcacg cttgaaattt atgtcgatcg
     1381 tggaaattta gaccgtgcac cttgggcgat ggagagctta aaacgttcaa tgaaatggga
     1441 tgaagagcgt ttcggtttgg aatacgattt agatatttat atgattgttg ccgttgattt
     1501 cttcaatatg ggagcaatgg aaaacaaagg gttaaatatt ttcaattcca aatttgtatt
     1561 ggcaaaaccg gaaaccgcaa ccgatacgga ttatttagat attgaagcgg tgattgccca
     1621 cgaatacttc cataattgga cgggcaaccg cattacctgc cgtgattggt tccaactaag
     1681 cttaaaagag ggcttaaccg tcttccgtga tcaggaattt acctccgatt tatggtctcg
     1741 ttcggcaaaa cggattgaag atgtgcgttt actgcgtacc gtacaatttg ccgaagatgc
     1801 cagcccgatg gctcacccga ttcgcccgga aaaagtgatt gaaatgaata atttctacac
     1861 cgtgactgtg tatgaaaaag gggcggaaat tattcgtatg attcacaccc tgttaggcga
     1921 agaaaaattc cagcaaggta tgcaacttta tgtggcaaga cacgatggtt ctgcggcaac
     1981 ttgtgaagat ttcgttaaag caatggaaga tgcttcaggc gttaatcttg aacaattccg
     2041 ccgttggtat agccaatccg gcacgcctga gctcaccatt tccgatgaat atgatgaaac
     2101 ccgcaaggca taccgcttgc atatttcaca aatgacaccg gcaacccacg atcagatgga
     2161 taaactcaat ctgcatattc cgcttaaagt agcgttatat ggtgaacagg acggtaaacg
     2221 cattccgtta caatatgaat tattgaccgt aagcgatgtg ttagatgtaa ccgcagaaca
     2281 ccaaaccttt gagtttcata atgtaacaca acgcccggtg cctgcattac tgtgtgattt
     2341 ctctgcaccg gtacggttag attacaacta taccaccgag cagcttttaa ccttactcaa
     2401 acacgctgaa aatgattttg tacgctggga tgcagctcaa atgctctata ccaatgaact
     2461 gcgtgaaaat ttaagccgtt atcagcaaca tcaaccactc agcttctcag aagggttggt
     2521 gaatgcccta acgttcgtgt tggataactc agcaagcctg ccggaactaa ctgcattaac
     2581 cctcacattg ccaaaagaaa ccgagtttgc agaatcgttc aaaaccattg acccacaagg
     2641 tattgcggtt gtgcgtgaat ttatgcagca ttccattgct cacgccttgc aagataagtt
     2701 attagcggta tatcaccaaa accaatgcgg ggaatatcaa gtcgtggctg aagatattgc
     2761 taaacgagcc ttgcgtaatg cttgcttaag ctatttagcc tttactgatt taggcaacgc
     2821 gttggtgcat aagcattaca ataatgccga taatatgact gatacgcttg ctgcattaca
     2881 agccgcaacc aaagcccagc taagttgccg tgatgcatta ttagccgatt ttgagcaaaa
     2941 atggaaacat gatggtttag tgatggataa atggtttatg ctacaagcca cccgaccgga
     3001 cgacgatgtg ttatccatcg tgcaaaattt aatggaacac ccaagtttta actttaataa
     3061 cccgaaccgt ttacgttcat tagtaggtgc attctgcggt caaaacccga aagccttcca
     3121 cgccattgac ggttcaggct atcgtttctt ggtagatacg ctgattaaac ttaacgaaag
     3181 taacccacaa gttgctgctc gacttattga gccgttaatt aaactctcac gctacgataa
     3241 ccaacgccaa accttgatgc gtcgtggtct agaacgcctg cgtgagctgg ataatttagc
     3301 acgagatctg tttgagaaaa ttgaaaaagc gttagattaa accaagcaat acaagcggtg
     3361 tcgtttgcaa atttttttac aaatgacacc gcttgttagt taatacctta cctcaaacct
     3421 tttaaacctt tctgagccaa gataatcgct cacaattacc cgttccacct ttgcagcagg
     3481 tgagccttgt tgtaaccaat tttccagttg agcgattgtc tgttcatccg cttcagctac
     3541 cacttctacc gagccgtcat cacgatttct gacatagcct tttatgccta atcgattcgc
     3601 ttcctgcaag gtaaaaaacc gaaaagcgac accttgaacc cgtccgtaaa ccgagaataa
     3661 ttttgcgacc attcttcccc cataaaaata ggctgcttat ttttcaataa acagcccata
     3721 atgtcttatt tcacgatgta gaggttacgc agtaaaatat catcttgcgg atctttaccc
     3781 tcatagcctt tcacgtaagg tttcaccaaa cgtgggttta catagttata aatcggaata
     3841 atcgcataat ctttggctaa ctgctcctct gcttttgcat aagcagctgc acgaccagct
     3901 gcgtctgtcg ctttgtaaga ttctgctacc gcatcatcat aagcttggct cttataaaac
     3961 gcagtattgt tgctggagtt cgataagaaa tagttcacaa aggtggttgc ttggttatag
     4021 tctgccgacc aacctgcacg agaaacatca taatttgcat tgcggcgggt atctaagaat
     4081 gttttccact cttggttttc taatttcaca tcaacaatgc cgtctgtgcc ttgtttccat
     4141 aatgatgaaa ctgcaatcgc aattttcttg tggttgtcgt tggtattata aagaatagta
     4201 aattttaacg ggttcgcttt actgtaaccg gcttcttcca ataatttcaa cgctttggct
     4261 tttctatctg ccattgaatc tttggaataa gcaggttgct ggattttttc accctcgtga
     4321 atataaggcg gtgtaaatac ataagttggt gtttgacctt gtcctagcac tttatcggta
     4381 ataatggtgc gatctaaagc taagtttaac gcctcacgca ctttcacatt atcaaacggt
     4441 gctcgtttat ggttaatttc atagtaataa gtagaaaggg ttcttgccgt aaacacttcg
     4501 tttggaatct cttttttcaa ggttgcaaac tgctccggtg gaagagcata gttggtcata
     4561 tccaaatcac cggcacggta acgtgaaaca tcagttgcgg cattagcaat ggctaagaaa
     4621 gtcgctttat taatcacggt ttctttatca ttccaataat ttttattacg ctcaaacacg
     4681 attttttcat taataacgtg atcggctaag gtataagccc cgtttccaac cagattgcct
     4741 ttttgcaccc acgcatcgcc gtgtttctca acggttgctt tgtgtacagg taataaagaa
     4801 gagtgtgttg ccagctcaac tgcatacggg acaggttggc ttaactgcac ctggaaagta
     4861 tgatcatcaa tcgctttaac tgctagttcc tccggttttt tcttgccgtc aataatatct
     4921 tgagcatttt ctacattgag ataagttaaa tagcttgaat aaggtgaagc cgtaagtgga
     4981 ttaaccaaac gctgccaagc aaatacgaaa tcgtgagcag ttacggcatc accgtttgac
     5041 catttagcgt cttggcgtaa tttgaacgtc cacgttttgt aatccggtgt attttcccaa
     5101 ctttctgcca cacccggctg aatattgccg tcagaatctt tcgttaccaa tccttcaaat
     5161 aactgataag caacttgcga ttccggcacg ccctcaattt tatgtggatc aaaacttgat
     5221 ggctcaaaac cattattaat cgtaatttct tgtttttctg caagcgttgt tccttcaggc
     5281 actttggctg caaacacatt tgccgataag cctaacacta atgaggttgt taataaggaa
     5341 agcgagaatt ttgactgcat atttgatctc cattgatgaa tattggcttg caaccagccg
     5401 atttgttcta attaattttt ttaagtctag gcattattat tttgattgca aggaattttt
     5461 ttaaaaaatg tgatagatat cacctttcaa tgcaaaaatt gcataaaaaa atcccgaaga
     5521 aaatagctct ataaactctg ata
//
LOCUS       DANMGB010000152         5501 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.152, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000152 DANMGB010000000
VERSION     DANMGB010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5501
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.152"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            15..1667
                     /locus_tag="PXG19_002103"
     CDS             15..1667
                     /locus_tag="PXG19_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL6067368.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            1720..2654
                     /locus_tag="PXG19_002104"
                     /pseudo
     CDS             1720..2654
                     /locus_tag="PXG19_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(2676..4757)
                     /gene="recG"
                     /locus_tag="PXG19_002105"
     CDS             complement(2676..4757)
                     /gene="recG"
                     /locus_tag="PXG19_002105"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL6067369.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(4761..5189)
                     /locus_tag="PXG19_002106"
     CDS             complement(4761..5189)
                     /locus_tag="PXG19_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6067370.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(5189..5476)
                     /locus_tag="PXG19_002107"
     CDS             complement(5189..5476)
                     /locus_tag="PXG19_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6067371.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
BASE COUNT         1437 a         1208 c         1308 g         1548 t
ORIGIN      
        1 cataggagta aaaaatgact attttccaag ttgcacaaaa ttggttagcc caagacccgg
       61 atgcagagac ccgtgcggaa ttagagcagt taattcaagc ggcagaatcg gacgagaaag
      121 caaaagcaga attaacagcc cgttttgacg gacgtttaca gtttggtacg gctggtttgc
      181 gtggtcgctt acaagcgggt tcaatgggta tgaaccgtgt tttggtggca caagctgcca
      241 gcggtttagc tgggtttatt aaaggttatg ataaagagcc gtcaattgtt attggttatg
      301 acggtcgtaa aaattccgat gtgtttgccc gtgacaccgc tgaaattatg gcagcggcag
      361 gcattaaaac gtacctgctt cctcgcaaat tgccaacacc agtgcttgcc tatgcgattc
      421 aatattttga taccacagcc ggtgtgatgg taactgccag ccacaaccca ccggaagata
      481 acggctataa agtttattta ggtaaagcca acggtggcgg acaaattgtt tcgccggcag
      541 ataaagaaat tgctgctctg attgataaag tagcagcagg cgatattcgt gatttacctc
      601 gtagccaaga tttcacggtg ttagacgatg aagtggtaaa tgcttatatt gagaaaaccg
      661 cctcactagc caaacggcca aaagccgaaa taaactacgt ttacactgca atgcacggtg
      721 tgggctatga agtgttaagc aaaacattag aaaaagccgg cttaccgcaa ccgtatttag
      781 ttagtgagca gattcagccg gacggttcgt tcccaacggt taatttcccg aacccggaag
      841 agaaaggggc gttagattta gcgattaaat tggcgaaaga gaaaaatgcc gaatttatta
      901 tcgccaacga cccggatgct gaccgtttag cggtagccgt gcctgatgct caaggcaact
      961 ggaaaccact gcatggcaat gtgatcggct gtttcttagg ctggtattta gccaaacaat
     1021 tccacgcaca aggtaaacaa ggcgtgttgg cttgctcgtt agtatcctct ccggcgttag
     1081 ctgaaattgc gaaaaaatat ggtttaagct cggaagaaac cttaaccggc tttaaatata
     1141 tcggaaaagt tgaaaaccta ttatttggct ttgaagaagc cttaggttat ttggttgacc
     1201 cagacaaagt gcgtgataaa gacggcattt ccgctgccat tatgttctta gatttagtgt
     1261 gcagcctcaa acaagaaggt aaaacccttg cggattacac caccgagttt gtacaagagt
     1321 tcggggctta tgtaagcggt caaatttcga tcagagtttg tgatttagcc gaaatcggca
     1381 aattaatgac ggcgttacgc aacaatcctc caagcgaaat tggtggcttt aaagtggctg
     1441 agtttattga ccataccaaa accacacgcc aaaatgacat tttagtgttt gtgttggaaa
     1501 atggcagccg tttgattgct cgcccttcag gtactgagcc gaaaattaaa ttctatttag
     1561 atgctcgtgg cacagacgct gaaaacgcag agcaagtgct ggctcagttt gacgaaagtg
     1621 tgcgttcgct gcttcgccaa gaagaatacg gcaaacaaga ttgctaatgg cattaattga
     1681 gggggagctt aggctctccc ttttttaaag gagacaataa tggctcaaaa aattatttta
     1741 gattgtgatc cggggcatga cgatgcgatt gcgatgatgc tcgcttgggg gaatccgaat
     1801 attgatttgt tggcagtgac tacggtggta ggtaatcaaa ccttagaaaa agtatcgcgt
     1861 aatgcgttgg cggttgcgga aattgctcat atttgcaacg ttccttttgc caaaggttgt
     1921 gccagaccgc tggtgcgtga agtggaaaat gccccggata ttcacggtga ttcgggaatg
     1981 gatgggcctg tactccctga atctacccga caatttgaga aaaaacacgc cgctcaatta
     2041 attattgatt tgataatgtc gcacccggag aaaagcatta ccttagtgcc gaccggtggg
     2101 caataaccaa tattgctcta gctgcccgcc ttgagccccg tattattgaa agagtgaaag
     2161 aagtggtgct gatgggcgga ggttatcaca ccggcaactg gagtgcggtg gcagaattta
     2221 atattaaaat tgacccggaa gctgctcata ttgtgtttaa tgccggttgg aaggtgacga
     2281 tggtcggctt agacttaact caccaagcac ttgcgacccc cgatgtggtt gaacgcttta
     2341 aggcattaaa cagcaaatcg gggcagtttg tggtggaatt gctggcgttc ttcgccaaaa
     2401 tgtataaaca ggctcaaggc tttgatgctc caccggttca cgatgcctgt gcggtggcgt
     2461 atgtgattga cccaagcctg attgaagttc agcaagtgcc ggtcaatatt gagctaacag
     2521 gcacgcatac actgggtatg acggtggcgg atttccgcta cccgccaaaa cagtgtaata
     2581 cttgggtagc aaaaaaatta gacaaatccc gcttttggga tttggtaatt gaatcggtga
     2641 aaaacctgcc gtaatctaaa taacccgctt gccggttaag cgttggtata ttccgccttg
     2701 ttgtctaacc aacgcttaat taacgcctct gcaagcggtt gattttcgct aataatttgc
     2761 ttggcgtaac gttgcaccag cggaatcatt ttgcggtctc gcattaaatc cgccacctta
     2821 aattctgcca ttccggtctg ttttgtgccg agaatttcgc ctgtgcctcg aatctccaaa
     2881 tctttttcgg caatgtagaa accgtcttgg ctatcacgca tcacttgtaa ccgcttgctg
     2941 gaaattttcc cgagcggcgg tttgtacatt aagacgcaat gcgaggcggt tgcccctcgc
     3001 ccaacacgtc cacgcaactg gtggagttga gccagcccga gtcgttcgga attttcgata
     3061 atcattaggc tagcattcgg cacgtccact cccacttcaa ttacggtggt cgcaaccagc
     3121 aaatctaaat tcgctgcctt aaattccgcc ataatcgctt gtttttcctg tggtttcagc
     3181 cgtccgtgta ctaacccgat gcgtaaatcc ggcaaggctc gctgtaaatc ttcggcaatc
     3241 gctgccgcgg cttgagcctc caacacttcg ctttcatcaa tcagggtgca gacccaatag
     3301 gcttggcggt gttcttgctt acagacttgg tacacccgtt ggacgatttc tgctcgccga
     3361 tcttcagaaa tcaccacagt cgtgattggc gttctacccg gtggcagttc gtcaatgatt
     3421 gaggtgtcga ggtcagcata gaccgtcatt gccagcgttc tcggaatggg ggtcgccgtc
     3481 ataatgagct gatgcggata gttattttct ttcgctcctt tttcccgcaa ggtcagccgt
     3541 tggtgtacgc caaaacggtg ttgttcatca ataatcacca acgctaaatg gtgaaattcc
     3601 acattgtctt ggaacagggc gtgagtgccg ataatcatct gcacatcacc gtttttgatt
     3661 gcctcaagtt gtgcggttct cgccttgcct ttcactttac cggcaagcca gccaacctca
     3721 atcccaaagg gattaagcca gttggcaaaa ttattggcgt gctgttcggc aagaatttcg
     3781 gtcggtgcca ttaatgccac ctgcttgccg ttatcaatcg ctaatagtgc tgccaaggcg
     3841 gctactaagg ttttacctga accaacatcg ccttgtacca gtcgcatcat cgggtgtggt
     3901 ttggcaagat cttgctcaat atctgcggtt actcggcttt gtgcgtgagt aggcttaaaa
     3961 ggcaaactgt cgagaaaacg ctgttttata tcggtttggt aagtaagtgc ctctgcatat
     4021 tgctgtttta cccctaaacg gagttgctgc atcgctaaat tgtgtgccag cagttcttca
     4081 aaaatcagcc gtttttgagc agggtggtca cctttttcca agacttcggc agaaatcgtc
     4141 ggcggtgggc ggtgcaataa ctgcaacgct tcttttaggc tgtatttgtg cggattgtat
     4201 tcatcaggca acagctcggc gactttcact ttctctaata aagcgagggc ttgctcggtt
     4261 aatttccgca gcgaggcttg ttttaacccc tcagtggtgg agtaaatcgg ggtcagggtt
     4321 tcagccagta caagcggttg attatcccga ataatttgat attcagggtg gtgaatttcc
     4381 gccataaatc gcccacgctt aatttcccca aaggctttta cccgaacgcc ggtggcaagg
     4441 ctatttttca ttccagcatt gaaattgaag aatttaagca taattttgct ggtgctgtcg
     4501 gagagtgtaa ccgataaaat cgggcgttta ccaaactgga cttcggtaag ttgtacatag
     4561 ccttcaatgg tggcaaagct ttccgggcga acatcagcaa tcggggtaat acgggtgcga
     4621 tcttcatacc gcattggcag atgaaacagt aaatcctgca cattattaat gccgattcga
     4681 cttaactttt cggaaattgc cgctcctacg ccggaaaggg cggttaatgg cacgccgtct
     4741 aataattgtt cactcattat ttatgcggtt tcaaatgggt taaataaacg cacatcacaa
     4801 cggataaaat ctttggtgtt gcgggtgact aaaatcagat tgtggtattt ggcggttgcc
     4861 gcaatataag catcatttaa atccatttta ttgggaatat ggtactctga tgccaataga
     4921 gcaatgtcgt tattcaccac aaacgctttt gtttgataag cctttaatac attattttca
     4981 aaccaatcat ttaatcggtc tgattgttct ttgtctttgc gggctttcag caaaatacct
     5041 gttttgattt cagataacgt aatacagctg atattggtct ggctaggatt aacccctctc
     5101 agccactggc gaacattgac atccatcttg tcatttctta acttataaag ctcggaaact
     5161 atattggtat caaaaaggta gcgatacatt actcatctcc aaaatcaaca ggtcttggtt
     5221 tattgctttt gcggatttca accaatgttt gttcaaactc ttgccaaaat tcatcgctca
     5281 catcctcatt ttcggaagag gcgaatagct cttcaaagct tggctcgcta ggctttttct
     5341 gctgataatc catataacta gacaccacat tgacgatttt gccccatttg gtaataaaaa
     5401 ccggctcttt ttctgccatt tttaacactt tgctggcatt ttgattaaat tctctggaag
     5461 taatggttat tgccatatcg ctctccaaaa tgtagtaaaa a
//
LOCUS       DANMGB010000153         5496 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.153, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000153 DANMGB010000000
VERSION     DANMGB010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5496
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.153"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(21..1160)
                     /gene="dnaJ"
                     /locus_tag="PXG19_002108"
     CDS             complement(21..1160)
                     /gene="dnaJ"
                     /locus_tag="PXG19_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL6067372.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
     gene            complement(1383..1685)
                     /locus_tag="PXG19_002109"
     CDS             complement(1383..1685)
                     /locus_tag="PXG19_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067373.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            complement(1827..3725)
                     /gene="dnaK"
                     /locus_tag="PXG19_002110"
     CDS             complement(1827..3725)
                     /gene="dnaK"
                     /locus_tag="PXG19_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL6067374.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3984..4322
                     /locus_tag="PXG19_002111"
     CDS             3984..4322
                     /locus_tag="PXG19_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6067375.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            4493..5236
                     /locus_tag="PXG19_002112"
     CDS             4493..5236
                     /locus_tag="PXG19_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067376.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
BASE COUNT         1425 a         1199 c         1084 g         1788 t
ORIGIN      
        1 aatatgtact ttttatgatt ttatttgcct aagttatcaa agaatttctt cacaccatca
       61 aagaaacctt cgtgtttcgg acgatgttta ccttgtcctt ctaaactctc ttcaaattgt
      121 cgtaatagtg ctttctgttc ttcggttaaa ttcacaggcg tttcgaccac cactttgcag
      181 attaaatccc ctgcgtagcc accacgaggg cttgttaccc ctttgcctcg tacacggaat
      241 agtttaccgg tttgagtttc tgccggaatt ttgagtttta atttgccgtc taaagttggc
      301 acttcaattt caccgcctaa agctgcaagg gtaaagctaa tcggcacttc acagtataaa
      361 ttcgaaccgt cacgctcaaa aatatcgtgt tctttaacgt gaatcaccac atataaatcg
      421 cctgccggtg cgccattttc gcctgcagct ccctctctcg ataagcgaag ttgattaccg
      481 gtatccacac ctgccggaat ggtaacagag aggtttttcg ctttctgtac acgtccatcg
      541 ccgtggcaag aacggcacgg tttttcaatg cgtttacctg taccgtgaca acttggacaa
      601 actgcctcag tcacaaagaa accttgctga cggcgaactc tgccggagcc gtgacaatgc
      661 gaacaggttt ccactttgct ccctgcttcc gcccctgtac catgacaagt atcacattca
      721 gctaaggttt gaatgcgaat atctttttta cagcctttca cagcttcttc aagggtgatc
      781 tcgatgtcgt aacgtaaatc atcgccacgt accacacgtt ggcgacgtcc accgccacca
      841 aagccaccgc caaacatttc gctgaagatg tcttcaaaac caccgaaacc accgccgcca
      901 aagccaccga atccgcctgc accggcaccg ccttgttcaa aggcggcgtg accgtattgg
      961 tcgtacatcg cttttttctc gctgtcggtc agcacgtcat aggcttcggt aatctcttta
     1021 aatttctctt ccgactcttt actgccttgg tttttatccg ggtgatgctt tgccgccaaa
     1081 cgtttatatg ctcgtttgat gtctttctcg cttgcccctt tagacagtcc aaggacttcg
     1141 taataatctt tctttgccat tgttgttccg tttgtaaatt tttctgtgtt tttgaccgct
     1201 tgccctcgcc ccttgtggga gaggggtagg atggttaatt ccccctctct ctgaaaaata
     1261 tttctgaacg aaatattttt cggtctctct cccacaaggg gagagagttt tatataatta
     1321 aatgggatct agccaagatg gctcaagatg acacaagcgt ggacgcttgc gctatcaaaa
     1381 gcctaacaat gcggattcac cgcaatataa atttctactt tgccgtctgc taaatgtttt
     1441 tcaaaatctt tggtgtaagc tcgtttgagc aaaccttgtt tggaacggtt ttcaatcaca
     1501 gaccaagtgt ctgccaaaag agcttcggta gttggaattt gctcaaacca aacaaaatcg
     1561 tccattaaaa tcgcggtatt gctgttttcc gtttctgtgg caatgaccgt ttcgccactt
     1621 ttatgatcgt atattttata aaacggtggc tgtacatttt ccgttgtagg gtagagtttt
     1681 agcatttgta aaatttcctt tgaaaagcac cgcttgcaca gccccaaagg ggctgaatta
     1741 tgtgtaacct agcacggctc gtgctaggtg gtatatatct acacaaaagg ggcgaaagat
     1801 atttcgcccc tacaagttac gcaagattat ttattatctt tcacttcttc aaattccgca
     1861 tcgaccacgc cgtcatcttt ttgagattgt tgtggttgct cgccgccttg tgcttttgct
     1921 tgtgctgctt gcattaacgg ttctgaagct ttgattaacg cttcgatttt cgcttcgatc
     1981 tcggctttat cttcgccttt agctgcggtt tctaactcag aaatagccgc ttcgatcttc
     2041 gctttatcgt ctgcgtttaa cgcatcgcct gcttcggtaa tttgcttacg ggttgcgtga
     2101 gcaataccgt ctgcttggtt acgagcttga actaactctt caaatttttt gtctgcttcc
     2161 gcattcgctt ctgcatcacg caccatttgt tcaacttcag catcgcttaa gcctgaagat
     2221 gcttgaattt tgatttgttg ctctttgcca gtgtttttat cttttgcaga gacattgata
     2281 ataccgttag catcaatatc aaaggttact tcaatttgtg gcataccgcg tggagcaggg
     2341 ttaatacctt caaggttgaa ttgacctaaa gatttattat ccgctgcacg tttacgctca
     2401 ccttgtaaca cgtggatagt taccgcagat tggttatctt ccgctgttga gaacacttgt
     2461 gatttcttgg ttggaatcgt agtgtttttc tcaattaagg tagtcattac accacccatt
     2521 gtttcgatac caagtgaaag cggagtaacg tctaataaca atacgtctgt taccgaacca
     2581 cttaacacac cgccttgaac cgccgcaccg attgccacag cttcgtccgg gttaacgtct
     2641 ttacgcggtt ctttgccaaa gaagtctgcc acttttttct gtactaacgg catacgggtt
     2701 tgaccaccga ctaaaatcac atcgttgatg tcgcctactg ataaaccggc atcagctaaa
     2761 gcggttttta acggctctaa cgaacggttt actaaatctt caactaaaga ttccaatttc
     2821 gcacgggtta ctttaatgtt taagtgtttc gggccggttg catctgccgt gatgtatgga
     2881 aggttcactt cagtttcttg tgcagaagaa agttcgattt tcgctttttc cgctgcttct
     2941 ttcacacgtt gcattgccat tgggtcgttg cgtaaatcaa cgccttgttc tttttggaat
     3001 tcttccacta agtagttgat tacacggtta tcgaagtctt caccacctag gtgagtatcg
     3061 ccgttggttg cacgcacttc aaaagtttgc tcgccgtcaa agttatcaat ttcgataatc
     3121 gaaatatcga atgtaccacc acctaagtcg taaacagcaa tcgtttggtt ctctttctta
     3181 gaatctaaac cataagcaag cgctgccgct gttggttcgt tgatgatacg ttttacatct
     3241 aaacctgcaa tacgaccggc atctttagtt gcctgacgtt gtgcatcgtt aaagtatgca
     3301 ggcacagtaa taaccgcttc ggttaccggt tcgcccaaga aatcttctgc ggttttcttc
     3361 atttttttca agatttcagc agagatttgc ggcggtgcta atttatcgcc ttttacggtt
     3421 acccacgcat cgccgttatc tgctttgctg atttcaaacg gcataatttc aatatcacgt
     3481 tgcacttcag catcagtaaa acgacggccg attaaacgct tgattgcaaa taaagtattt
     3541 ttcgggttag taattgcctg acgttttgcc ggctgaccaa ctaaggtttc tttatcggtg
     3601 taagcgatga tagatggcgt tgttcttgcc ccttccgcat tttcaattac acgaggtttg
     3661 tcgccgtcca ttaccgcaac acaagaattt gttgtaccta agtcaatacc aatgatttta
     3721 cccattttta tgattcctat aataataaat tcagtttgaa taagaaacgg gattgcattt
     3781 cccgttcaga cgaaatcata aatagggacg aaaatgcact gttcaagggc aaaaataaaa
     3841 aaattgcaaa atttttggaa aaagtaaccg cttgtatgtg ggggagattt ggcagaatat
     3901 ttcacggaga aaatacctcc taccttgcat acccctcaat agctttttat acttacggca
     3961 actcaaacag agaaggatat aatatgaaac tgattactac cattatccaa ccttcaaaat
     4021 tagaccaagt gcaagatgca ctttcagaaa tcggtattca aggaatgact attaccgaag
     4081 taaaaggctt tggacgccaa tatgggcata ccgaacaaga gcttagccaa atgagccgca
     4141 ttgactttcg tcctaaaatt aaggtggaga tattggtttc taattaccaa accgatgaag
     4201 tgatcgatgc cattctcaat gcatcctatt ctgggcaagt gggtgatggc aaaatttatg
     4261 tagcgaatat tgaacaagtt atccgcaccc gtaccggcga aactgacgat gaagcagtct
     4321 agccattgct agcagagaag ctttttatta tcgtgtttta gagttatatt ttcaacctta
     4381 ctaaagcaaa ttttctaatt tggtgtgaat taaatgtttg ttttttgtgt aatacgggtt
     4441 attatagtaa tcaaaaatag ttaggtttta atggaaatag acattctttg ttatgctaaa
     4501 taaacacatt aataaaatta tcaattcttc attttctctt gcatttttta cattaactag
     4561 ttttgctacc gcttactgtt acggttgggg acaagccata tttcatggct acccttggtg
     4621 gcatgttgaa atcggcaatg ccagtatggc aagaagtttg gcttatgtat tcggtacttc
     4681 cgtcatctta ttcttgtgtt atgcactagg ttatagttta ctaaataaag tttttcagct
     4741 gcattatttc cgaaatctag gttggttaag ggtgattgtg ttggtttctg tgtttacagt
     4801 gcctgttatt cttacttttt acttatttac cgggatagtg cccatttata tctcttttat
     4861 ctatattttt gtaagtggtg tgagcgtatt cttcttccgc aagagatgga ataataccaa
     4921 gtttgatctg gactttagaa agatgctatt aggaggaagt tttgccctgt ttaacatctt
     4981 tatttttctc tatttcagtt tgctctcatt gcatattggt tatttgcgtg ccggactaag
     5041 aactacctat gattacatcg aaatagagaa tcaaaaatac tacatattat ccaccaacag
     5101 tgataacggc tacattatgg gaacaaaaat aagaggtaat caatctttct tgtttttcaa
     5161 tcgtgatact catcaatact accatgttca tattgaacaa tgtacggata gccgattatg
     5221 caaagtaata gtttgaggta attatggcat tacaccgttg tccggagtgt cgaaagcgta
     5281 ttagcgacag tttagaacat tgcatacatt gtggcttctc gtttaaagaa gccgatttag
     5341 cgatatatcg gcaaaagtta gaacagcgcc gattacacaa ccaggagatc aaccgcaaaa
     5401 gcgtaaaatt acaacttatt tggttagtta tttttattgc ggtaattgct ctcgcaagtt
     5461 ggataaccaa ttgaaataaa agcccggtat ttaccg
//
LOCUS       DANMGB010000154         5483 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.154, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000154 DANMGB010000000
VERSION     DANMGB010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5483
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.154"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            41..2107
                     /gene="glyS"
                     /locus_tag="PXG19_002113"
     CDS             41..2107
                     /gene="glyS"
                     /locus_tag="PXG19_002113"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL6067377.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(2212..3513)
                     /locus_tag="PXG19_002114"
     CDS             complement(2212..3513)
                     /locus_tag="PXG19_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL6067378.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3527..4804)
                     /locus_tag="PXG19_002115"
     CDS             complement(3527..4804)
                     /locus_tag="PXG19_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067379.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(4833..>5483)
                     /locus_tag="PXG19_002116"
     CDS             complement(4833..>5483)
                     /locus_tag="PXG19_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL6067380.1"
                     /translation="YLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAYEKSVIK
                     IINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTHIIIGHE
                     GKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFLKAVTHI
                     EQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREFKNNT"
BASE COUNT         1630 a         1102 c         1240 g         1511 t
ORIGIN      
        1 aaatcaaaga acatttatat aaaaattggt aatttaaaca atgacaacac aaaacttcct
       61 tgccgagatc ggcacagaag agctgccacc gaaggcactc aaaaaattag cgaccgcatt
      121 tgcggagaat gtagaaaacg aattaaacca agcaggtctt tcgtttgaga aagtggaatg
      181 gtttgctgct cctcgccgtt tggcggtgaa ggtgttgagc cttgcggaaa gccagccgag
      241 taaagaggtt gagaaacgag ggccggcggt gtcggcagcg tttgatgccg aaggcaagcc
      301 gactaaggca gcggaaggct gggcgaaggg ctgcgggatt accgtagagc aagctgagcg
      361 tattgccacc gacaaaggcg aatggttggt gcatcgtgcc gtgattgaag gtcagccgac
      421 taaaaatctg ttggtcgata ttatcgccaa atcgctggcg aacttgccga ttccaaaaac
      481 gatgcgttgg ggcgataaaa ccgagcagtt cgtccgccct gtgcataccg tgacactttt
      541 attcggggcg gagttgatcg aaggtgagat cttaggcgtg aaaagcggcc gtactattcg
      601 tggtcaccgt ttcttaggtg aacgtgagtt ccaaattgag aacgccgatc aatatccgca
      661 actgttgaaa gatcgtggat ctgtggtagc agatttcaat gagcgtaaag ccttaattct
      721 tgcaaaatca caggaaaaag caaccgcttt gggtggcgtt gccgatattg aagaagattt
      781 gctggacgaa gtgacctcgt tggtggaata cccgaacgta ctcaccgcca agtttgaaga
      841 gcgtttcctt gctgtgccgg cggaagcctt agtttacacc atgaaaggcg accaaaaata
      901 cttcccgatt tattcaaaag acggcaaatt gttaccgcac tttatttttg tgtcgaacat
      961 caatccggaa gacccaagca aaatcatcga gggtaacgaa aaagtggttc gcccacgttt
     1021 gaccgatgcg gagttcttct tcaaaaccga cttaaaacag aagttggaag accaactgcc
     1081 acgccttgaa accgtgttgt tccagcaaca gcttggcaca ttgcgtgata aaaccgctcg
     1141 cattgaagcg ttggcaggtg aaattgcgaa gcaaatcggg gcagatgaaa ccaaagcgaa
     1201 acgtgcaggt ctcctctcaa aatgtgacct gatgaccaat atggtgtttg aatttactga
     1261 tacccaaggc gtgatgggta tgcactatgc ccgccacgac ggtgaagatg aagaagtggc
     1321 ggtggcgtta aacgagcagt atatgccacg ttttgctggc gataacttgc caaattcatt
     1381 ggtggcttgc tcggtggcgt tggcggacaa atttgacacg ctaacaggga ttttcggcat
     1441 tggtcaagcc ccgaaaggca gtgccgaccc gttcgcccta cgccgtgcgg cacttggctc
     1501 gttgcggatt attgtggaga aaaatttacc gcttgattta accgatttag tggcgaaatc
     1561 tgctcaatta tttggcgata aactcaccaa caaagacgtg gttgaggacg tggtggactt
     1621 tatgctcggc cgcttccgtg cgtggtatga gagcgaaggc attgcggtgg acgtgatcca
     1681 agccgttctc gcccgccgtc cgaccaagcc tgccgacttc gatgcccgtg tgcgtgccgt
     1741 gtctcacttc cgcacccttg acagtgccga agccttagcc gcagcgaata aacgggtgag
     1801 taacattctt gccaaagccg atattgcaat tggcgacatt gatgtttcag cttgcgtaga
     1861 gccagcagaa aaagcattag ccgaggcggt tattgcgttg aaagccgaag ttcaaccgct
     1921 gattgcacag ggcgactaca ccgctgtgct ggataaatta gcgaacctcc gccaaccggt
     1981 tgatgccttc tttgacggag taatggtaaa tgcagaagac caaaaactgc gtcaaaaccg
     2041 cctcgccatt ttaagcacgc tacaaggctt gttcctgcaa gtggcggata tttcgctgtt
     2101 gcaataacaa taagtttgca ataattgcaa aattttaatg aaaatagacc gcttgcagta
     2161 attgtgatct gcaagcggtc ttttttgctt gaaattttac caaaggcggg attatttaag
     2221 ttttggttta ttcaccataa tctcgatgac ttggcggtct gtgtattgca tactacgaga
     2281 ggcaatgctg cataagttat taattgaacg atcaatatcg tgttcgacaa ttccttcgtt
     2341 gcctgttact tggctattat ccatagacat cagaatggat ttatagcttg atgttacgct
     2401 ggtggagact ttcatcgcac aactgtttga agcaccatca cagataatac cgctaatatc
     2461 gccgatcata ctactaattg ccatactgat attctcaaat ttccctgtga gcagccacgc
     2521 tatgccggca cagcttccca tagccgcggt tgttacggca cagagtgcag ataatttcgg
     2581 taacttgctg tgaatataaa ttgccatgag gtgtgataaa aagagtgctc taatgcgttg
     2641 ctcatcagtg acatttaaat ggcgggcaac gacaacaatc ggcatagttg ctgtaattcc
     2701 ttgattacct gaacccgaat tgctcatagc aggtaaactt gcaccgccca ttctagcatc
     2761 agaggcagag gtggtttcta taacaatgcg attaagcaaa tcatcactga ttagacctag
     2821 accaatctgt ttttgcaatg tccttccgat atgtagccca taatcggcac gtaatccttc
     2881 ttgtgagagt gcggaattta attgtgctgc ttgctcaata aagcgaattt tttccaattc
     2941 gatttgcata gaaaaattaa atatatcttt tgccgaaagt gaagcaaaga tctcagtagt
     3001 attatcgtta ttgacggcac aaggtttgct taaaatagtt tgcccgtttt tttcaatgta
     3061 aatgacattg gtatggtgtt cagcaatacg aacacatact cgattcgctt ggtgaaatag
     3121 tgttgcttca gaatatagaa tatgttctgt ttcgaaaata gagacagaca ctttatcggt
     3181 atttaacata gctttagctt gcttaacctg ttctggcgta atatttttta atacttctaa
     3241 tccaccatca ggctcccctc cgattgctcc aatagctgcc gccataggca atccgacggt
     3301 tgcagttccc ggtactgcta ctcccatccc atttttcatc aagttagggg aaacttttgc
     3361 ctcaatacgt tctggtaaat gacctaaata ttggcgtgca atggcggatg caagggcgag
     3421 agaaataggt tctgtacagc ctaatgcagg gacaacttca tggttgactg catgtaaaat
     3481 ggattgtact aatttttcgc agtgaatatt catagataaa accttattac tctaaaaatg
     3541 tgaggaatgg agaaatacat aataaaatgc cggtaatgat aataatattg agtgctagcc
     3601 ctttatattt gaataatgca ggcactttat agactaaata ggccggaatc aagcacccaa
     3661 ctaagccaaa aataggacta cagattgagg taaagcttaa aaccggtgca tttaatacaa
     3721 tcgcactcca agccagcaga atggaaaata acataatccc tttctgcaca taattaggat
     3781 tgattttttc agccgggaat tttcttaata ataggttcat cacaatgcct tgagtggctt
     3841 ctctaaaacc taaatatacc ccgaaaaagg ctgtcataac ggcaaaaata tttaatgcaa
     3901 cacctacata ggttgcccaa ctaccaggga aaaattgggc tgcaattgct aatgcggaaa
     3961 cattttgctc gtatgctttg agcgcttctt ctctccccat tgcaagtgta aaagagacag
     4021 cgtaaaaaaa aacggtaata aataagatag caaatgcaat attcatcgct cgtagggctt
     4081 tatagcgcgc aacttcacga gactgttctt tagcacggta agaaattacc attgggctga
     4141 gagtttgcaa gaagagtata gaggttaggg tgaaaggaag ggtaatgatg gcatctttta
     4201 taagtttgcc gaaaggaggc attgcaccga tattatggag ttgccacatt ccaatcattg
     4261 caagccctaa ggcggcaacg acaaatagct tagttaatac cataaatgta gatattttaa
     4321 acagtagctt ttcgcctcga gaagataagg caactaatat acagattagc actaagccat
     4381 aaaatggatt atcagagagt agtgtattgg taatgccgaa ggtaagaaga taggaggcac
     4441 tgtcgtttgt aattgcggta gaataaacaa acatccaaat cactaacata ataaaataaa
     4501 gtacacctaa aaagattccc cagtttttgc ccaggtagcc actaataacg gtggggtaat
     4561 ctttgcattc cggagattct gctaaagtat taatgaacag acgctgaaaa aggtacatcg
     4621 ccgggtatcc gataatagaa gaaagtagaa aaacccacat gcccataagt cctacttgta
     4681 ccggtaaaaa gacgatgcct gccccgatag ccataccaat actcataatg atccagccga
     4741 agtcggtaga atcaaatttt gttgcttgtt taaattcggc aggcgagagt ttttgagtat
     4801 ccatagagtc tccttaaatc gtaacagtat aattaagtgt tatttttgaa ttctcttaaa
     4861 tgtttataaa ttgcgtggct ggttagggag agtttttctg ccacaatagg tactgcctct
     4921 tttagctcaa agatgccatt ttcaaacaaa tagaagataa tggatttctt atagagtttt
     4981 gaatgtttgg tagtgtgttg ctcaatgtga gtaactgctt ttagaaaggt ttcttcaata
     5041 agttcttttg ggtgagtaat aaagttttca cttttataat gaggcggaat aggatcgtaa
     5101 ttcataaaag agctaacggt tttatctaat ggtgtcgata aatttaaatt aatacaaaat
     5161 aatccgatag gtttgccctc atgcccgata ataatatgcg tggtggactt aactaagtta
     5221 ccgttattta accgtgaaaa gtaaaccagc tcagtattag attgatcttt ttggtaacat
     5281 tttagtaact gtaatccttt atctgtaata ggcgaaccta tttttcggtt agtatgatgt
     5341 ccgttaatga ttttaataac ggatttttca taggcattca atgaatgaat aaccacctca
     5401 cagaattctc ctaataaccc tgctattgct tcacttaatg agaaataaga cagcataatt
     5461 tctttgtcta aatcatgaag ata
//
LOCUS       DANMGB010000155         5472 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.155, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000155 DANMGB010000000
VERSION     DANMGB010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5472
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.155"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..308)
                     /locus_tag="PXG19_002117"
     CDS             complement(<1..308)
                     /locus_tag="PXG19_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL6067381.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     S"
     gene            complement(305..1510)
                     /locus_tag="PXG19_002118"
     CDS             complement(305..1510)
                     /locus_tag="PXG19_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL6067382.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1520..2704)
                     /gene="neuC"
                     /locus_tag="PXG19_002119"
     CDS             complement(1520..2704)
                     /gene="neuC"
                     /locus_tag="PXG19_002119"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL6067383.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2705..3964)
                     /locus_tag="PXG19_002120"
     CDS             complement(2705..3964)
                     /locus_tag="PXG19_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6067384.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(4024..5061)
                     /gene="neuB"
                     /locus_tag="PXG19_002121"
     CDS             complement(4024..5061)
                     /gene="neuB"
                     /locus_tag="PXG19_002121"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL6067385.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(5061..>5472)
                     /locus_tag="PXG19_002122"
     CDS             complement(5061..>5472)
                     /locus_tag="PXG19_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL6067386.1"
                     /translation="LEKFSKLQKYKCRIINVVDKTALVSKNSTLGIGVFVGKMAIVNS
                     GVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDVIVEDHAFIGSSSVVNGQLRV
                     GESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1729 a         1136 c          903 g         1704 t
ORIGIN      
        1 gaaatggcac ttaacagaaa ttgaatttct aactcattga tatttgctaa aaagacttta
       61 ttaaacttct taccgccaaa agtacgtttt aaataaataa tttcttttaa taattgaata
      121 cgctcgctat gttgttgcat cgcaaaaaat tgttcgcact tttgggctaa tctagcttgg
      181 taaaaatcaa atttcgcgtt ttttaccgta gaaagcatca ccccatagaa tcgctcatta
      241 gggtgcattt caatgatttt ttcagcaatc aacacttgca agggcgtgca acaaataatt
      301 aaattcatac ggtttttcct acttttgccg tcattatata aagaatcgga ataatgctga
      361 ttgcaccaat gatgctggca aaaggaatat attcaatttt agaaaaagtt aaagcaaata
      421 gtgcaactaa ataaaaaata gtagataaaa tcgagcaaag cgaaattagc ttatttttgc
      481 cataaaaaaa caaataattg actaaaatga ggtaaggcac aaccaacatt gtcgcaatta
      541 aaaagagaat aatgtagtat tttgttccta caaattggct acccagaatc cataccacta
      601 attcttccgg aataaaccac atcacaatag caggtaatgg tacaataaat aaggcataca
      661 acgcccattt gtggatatgg ctgacattaa tttttttctg ctttaaggct tcataaaaat
      721 aaggcagtgt tgctttattt aaggcttgaa ccacaatggc tagaatcatc gcaatttgag
      781 cccccattgc atataaacct aaatcctctt cgctaaattt atggtaaata aatactctgt
      841 ctaactgtcc ttttaagaaa atactggaat ggtgcaaaat caacggaata ccaaagccga
      901 ataaatacaa taaagcagtt ttatggcggg caaggctaaa tttcttcgtt tttgctcttt
      961 tagcatacaa aaagtaagcg attagaaaga ctaagccatt actcatcaaa atcgctaaaa
     1021 tccgcttttc cactaaatcg gtcttaaaat actccatcat tgcaacggta ataactgccg
     1081 aaaaaatcgc cgacattaat tgaatcgttg tataagcaag tgcctgtttt tgacactgcc
     1141 ttacactaag ctgtacattc aaaaacgact ggaacatcgc cccaatcgct acataagcaa
     1201 taatttcaga ctggaaatac cagcaaccca acaggataag caaagttgca caaagagtat
     1261 ataaataccc tgtactcaag actaaattta gtgaacgctt accataaaaa tagaaatagc
     1321 gagcaaccgc accgtcttgg ctaagcccga taaaaattac aaataaagca gcaaaggttt
     1381 ggtagtagga aagctcccca taacctgcca cgccgagttt gcgtgaaaag tagggtaaga
     1441 gcaagaaagg aattgacttt gacgccaatt ccccaattaa ataaatcaca ctgtctttaa
     1501 ctgctttcat agttgcaaat tattctgatt ttttgaccgc ttgcgagaaa gcaacatcat
     1561 aaaatccttt cggttgagta tggtggctgt ctgctaagaa tattttgatt gcattgtaag
     1621 ccttttccat cgcgttgtct tgaaaatatg gatttttcat actcggtaaa cggtgttgga
     1681 aatcggctga aatcaatttt tcgataccat ctatgatagc ctgttcatta ctctctacat
     1741 caattacgct ctcatcccgt actcgccctt gctggcgatt accgatattt agcgtaccaa
     1801 caccacaact cggtgcttca atcaagcctg atgagctatt accaatcaac ccatttgaat
     1861 atttaatcaa cgctaaatac tcttccggtt tgactgaggt gaaaaactta aattgatttt
     1921 catcggtgta agccttaaaa cgtgcataaa tttgctctga attggtgtct gaatttgagc
     1981 cgataaagac gaattggtat ttgtctttaa actgctcaaa agcattgagt aacgcctcaa
     2041 tttgctccaa cacggaaaca tcggttaagg tttccgggtg gaagaccact aaaaaataag
     2101 gcgatgccgg aatccctaat ctctcgacta attctgcttg ggtcggcaac actaaatcca
     2161 aactattctc cgcccctaga gaaccagtat tcaccacatt ttcgggcagc tcgcccattt
     2221 gaatcacacg ctgtctatat tcttcagttg aagttaaatg caatttcgac attttggtaa
     2281 tacaatggcg aataaattca tcgtaattac ctaatgtttg ctcaccaccg tgcagatgaa
     2341 tcagcggaat attatgcatc gccgcagccg ttgccaccgc caacatctcg taacgatcgc
     2401 ctagcacaat caccgcatca taacgatgtt gctggaaatg ttcgccaaat cgatctaaac
     2461 actctgccat tgaatgaata atggtctgat tattttcact gtttaaggta agcggaatac
     2521 gagctgcaat ctcaaagcca tcttgctcaa tgaccgtcac cgtattgcca tattgcggat
     2581 ccaaatgcat cgcagtaaca accagagaga aattcacagt cggatcttgt gctaattttt
     2641 gtaataaacg ctttacaatc ccgtattcgg cacgagatcc ggtaatatag gcaatatttt
     2701 tcatttagtt gagctctttt tccaaaatag cggttaattt ttcataacct tttgcattta
     2761 aatgtaatcc gtcatcgcta tagcttaaat ccaatttgcc atatttatcg ctaaatgcct
     2821 gatctaagct aatccatttc accgctaaat tatctttaag atattgattt aacaagcgaa
     2881 tatcgttgtt attacgatcg actctaaatg cagttggggt aatttccaag aaatagagat
     2941 taatatctcc acgaattgct gttaattgtg caattaaatg attaatatct gctagaattt
     3001 tttcatcact ccagccagca tatacaatat cattagtacc gaacattaaa ataatgtctt
     3061 taggtaaagc agaaattaaa ccttcatcca aaatcagatc actgtattgt tttgttgaaa
     3121 tacctgcaat tcctaaatta ttaactgcct taccgtttaa atgttcaata tcccaatatt
     3181 caatgatcga atgcccgatt aaggctatct ctttcacttc tttaaagttc tcttttttca
     3241 ttaaaatcga acgtttaatg gtttcaagta agattttttc tttattgcgt tgttgcagaa
     3301 taaagtagaa gtactcgaaa tcttggcgat catcaatatc aatagaaacg tctttatcca
     3361 taaaataggc tagacatttc gcaccataga agtgtttttg tttaagatag gcttctggct
     3421 tagctgtaaa aatagctcca ttcggtgaat attcaggatg atgcaattgg cgtgcatagt
     3481 tagaataatc caactgaaaa tgctttaggc actcgtcttc ctcaatcata cgagtcaatg
     3541 tcgtaggttt atgggcatca gaaacagata ctaagaaatc aaattgttcg aaatttttct
     3601 caaatttttc acacgattcc ttaatatgct ctcctgatct caacggcgaa gttggttgaa
     3661 gtagcataaa atagtcaaac tctactgatc tatattgatt taacacatct tcaatcacga
     3721 caaaagaact cgccttatca ctggctaaat gctcggcacg tttaataaat tcaattggat
     3781 aatgtgagaa caaatcaatg tattcttggg aatcagtact aacgataatt ttctcaaatt
     3841 gccccgactc aatcgcagct tcaatagaat aggccattaa cggcttaccg ttggctaata
     3901 atacattttt attcggcaag ccttttgaac cggctcgggc tgtaataatt gcaatttttt
     3961 tcataaattt gaccgcttgt taaacacaaa atgatggagc tttcatccca tcactatatt
     4021 atattacatc tgattttcaa aacgagaatc ttgaattaat tgatcttctt caaaatcctg
     4081 ttgtgcttct ttacctagca catcatacca aaacatcggg ctaatgccat taccggggcg
     4141 tttagtcgta atattttcgg ttgtaaaaat ttcgcctttt ttaattggac gtgccgcaat
     4201 aattgatttt cttgccacaa ttttattttt tgcttccgaa ttagtgacta atttctcgga
     4261 agaacccagc gatttttcca ccgcacgaat gccttcacac agtaatttca gctcttcagg
     4321 tgtaaccgaa gctttatgat ccggaccttc aaagttttta tctaaggtaa aatgtttttc
     4381 aatgaaggta atgccgtaag gtactgccgc caaccctgca aaataaccgg cagagtggtc
     4441 agaaaaacct aaactatagt cgccaaactc ctgttttagc tgatggaacg catttaaatt
     4501 cacatcttca taaggtgtcg ggtactcggt attacaatgt aaaatcgtaa tatctttttt
     4561 cgctacaccg ttatcttcca atacttttaa tgaggctttt gtttcttcaa tggttgccat
     4621 accggtagaa ataacgatcg tcttgccttc aatcggaagt cgtgcaattt tttctaaata
     4681 cggcaaattg gttaattcac cagacggaat tttccacact ttttgttgtt ggcttgccaa
     4741 gaaatcaatc gactcgaaat cgaatggcgt agagaatacc tctaacccca atgaacgagc
     4801 gtaagcctct aatttcacaa actcctcata aggtaactct aatttgcggg tcatttctaa
     4861 ttgggaatca gcggtgccgg tcgttacttt ttgatactcg gctttagggg catatttaga
     4921 gatcaactta tccgctttaa aggtttggaa tttcaccgca tcgacaccac actctttcgc
     4981 tacatcaacc attttctttg ctaacgcagg atcgccgtta tggttacaac cgatttctgc
     5041 cacaataaat acatttacca ttattttata tccttaatat attttgctgg aacgcctgct
     5101 acaactgtgc gaggctccac atttctaatt accactgcac cggagccaac caatgcactt
     5161 tcacccactc ttagctgtcc gttcacaaca gaggaactac caataaaagc atgatcttcg
     5221 acaattacat cgccatttag tgtcgtattg gttgaaatat tgcaatgact gccgataaaa
     5281 caaccatgct caaccagcga tttagtgtta atgatcacat tatcgcctac agttacgcca
     5341 ctgtttacaa ttgccatttt tccaacaaac actccaatgc ctagagtgga atttttggac
     5401 accaatgcgg ttttatctac cacattaatt attctacact tatatttttg tagcttagag
     5461 aatttttcta aa
//
LOCUS       DANMGB010000156         5400 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.156, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000156 DANMGB010000000
VERSION     DANMGB010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5400
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.156"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            16..150
                     /locus_tag="PXG19_002123"
     CDS             16..150
                     /locus_tag="PXG19_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL6067387.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            154..1317
                     /gene="torC"
                     /locus_tag="PXG19_002124"
     CDS             154..1317
                     /gene="torC"
                     /locus_tag="PXG19_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL6067388.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1417..3882
                     /gene="torA"
                     /locus_tag="PXG19_002125"
     CDS             1417..3882
                     /gene="torA"
                     /locus_tag="PXG19_002125"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6067389.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3882..4472
                     /gene="torD"
                     /locus_tag="PXG19_002126"
     CDS             3882..4472
                     /gene="torD"
                     /locus_tag="PXG19_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL6067390.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
     gene            4612..5301
                     /locus_tag="PXG19_002127"
     CDS             4612..5301
                     /locus_tag="PXG19_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL6067391.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
BASE COUNT         1542 a         1182 c         1314 g         1362 t
ORIGIN      
        1 aaaaaaggag ttgaaatgcg ttcagaacta ttaaaaacgc ttttgctatc agggctgatt
       61 ttaccgctat tgatggcgtt tgccgtagga gcttacggct ttattgtgtg gatgttacaa
      121 ctgtttgtta ttggtttacc gggagcgtag aaaatgttag gttcaatcaa agcattattt
      181 actcggcctg caaccaaaat cgggttggga gtgttagttg gtatcggttt tattgccgga
      241 gcaattagct ggcatcaatt taataaagcg atggatcata ccagcactga agagttttgc
      301 gtgagttgcc actcaatgca gcagccgtta gaggagctta aaaaaaccgc ccactggtcg
      361 aataaaagcg gggtaacggc aacctgttca agctgccact taccgcacga ttataccgaa
      421 aaatatgccc gcaaagtgca ggcaagccgt gaggcgtggg cagaattatc cggcaaatat
      481 aaagaagaag gctcatttga aaaacaccgc ttagaaatgg cagagcgtga gtgggcaaga
      541 tttgccgcca atggttcaaa agagtgtaag gcttgccaca gctatgagcg aatgaatttt
      601 gataaaatgg gcgaagcagc tcgtaaggca atgaaaccgg ctgcggagaa agatcaaagt
      661 tgtatggatt gccacaaagg cattgctcac cacttaccga aagccgatga aaatgcactg
      721 aaatcgaagt ttgatcagtt tgtgaataaa tccccaaacc aaggcaaatc ttactacacc
      781 aaagggaatg ccgaattatt tctagacgaa ggtttaagcc aagctatcgg gcaattagaa
      841 accgccgtgc cggtggcatt tgtgcaagcg ggcaaaaatg cggatttggt tgagctgaca
      901 atgtggcgta aagagaaagg tttcggtcgc atttggtatc acgatttcgg gaaaaacatt
      961 accgatgcgg ttctaaccaa agagtttatg gcaaatcagc cgaaatttga ggtgttggaa
     1021 accaaagaag atccgattac cggcttgaat tggcaaaaag tgaaactaca agcgtggatt
     1081 ggcaaagctc aattattaga cgatgttacc ccaatctggg cgaatgcaga aaaccaatac
     1141 aaaacccaat gtagcacttg ccacagacag cctgatgtcg cccacttcga ttccaacagc
     1201 tggatcggct tattcaacgg aatggtcggc tttaccaata tggataaaca gaccggcaaa
     1261 gaggtgctac gttatttaca aatgcacgcc tccgatagtg aagaagcgaa gcattaataa
     1321 tattactccc ctctttacta aagaggggaa ttaatcgagc gttgaataac attctctgta
     1381 ctagctcacg tttttacaaa taaagaagga caagatatgc aacaatctcg ccgtcaattt
     1441 ttaaaaaata tgtctgtgat ggctgccgct gtcacaatgc cgaatttcct cgtgcctcgc
     1501 aatgtgtttg cgagtgaaga cctcagtcaa tggaaagttt ccggctctca ctggggggca
     1561 atgcgtgcca aaattgagaa cggacgagtg gcagaaatca aaccgttcga gtttgataaa
     1621 cacccgaccg aaatgctcaa cggcattaaa ggcttaattt acagcgattc ccgtatccgc
     1681 tacccgatgg tgcgtttaga ttggctcaaa aaccgccata acagcaacac cgcacagcgt
     1741 ggcgataacc gctttgtgcg ggtaacgtgg gacgaagccc tcgacctgtt ctaccaagag
     1801 ttagaacggg tacaaaaaga gtacggcccg tgggcgttac acaccgccaa tgtgggctgg
     1861 cgttcaaccg gtcaattcca cagttgcggt aaccatatga tccgagcgat tgcgatgcac
     1921 ggtaacagtg tcggcacggc aggcgactat tctaccggtg cagggcagac cattctgccg
     1981 tatgtgctgg gttcaaccga agtctattcg cagggcacgt cttgggaaat catcttaaaa
     2041 gagagcgaaa acatcatttt ctgggcaagc gacccggtga agaacctgca agtgggttgg
     2101 aactgcgaaa cccacgaagc ctatgcctac ttggaaaaac tgaaagagaa agtggcagca
     2161 aaaggcgtga atgtgatctg tgttgatccg gtgaaaagca aaacccagaa tttcttaggt
     2221 tgcgaacagc agtacatcaa tccacaaacc gatgtgccgt ttatgttggc acttgcccac
     2281 acgctctaca ccgagaacct gtacgacaaa aaattcttgg atatgtacac ggtcggcttt
     2341 gaaaaattcc tgccgtatct gttaggcgaa accgaagaca aagtggcgaa aaccccggaa
     2401 tgggcggctg aaatttgtgg tatttccgcc gacaaaatcc gtgaatttgc ccgaatgctt
     2461 gccggcaaac gcacccaatt tattttcggc tgggcaattc aacgccaaca acacggcgaa
     2521 caaccgtact ggatgggagc ggtgctagcc tcaatgttag ggcaaatcgg cttggaaggc
     2581 ggcggcatca gctatgctca ccattacagc tctatcggta ttcctgaatc cggtgcggca
     2641 atgccggggg cgttcccgct caatattgat gaggggcaaa ccccgaaata cgacaacaaa
     2701 gattacaaag gctacagcga caccattccg gtggctcgta tgaccgacag cttgctccac
     2761 gccggcgaaa ccattgatta caacggcaaa aaagtgactt acgctccgtt caaaatggcg
     2821 attttcaccg gctgtaacca atggcaccgc cattccgagc ggaacaaaat gaaacaggcg
     2881 ttccaaaaac tggaaaccat tgtttcgatc aactacagtt ggacggcaac ctgccgcttc
     2941 tccgacatcg tgctgccggc ctgtacccca tttgaacgca acgatattga cgcctacggc
     3001 tcatacagca accgtggcgt gattgcaatg cacaagctgg ttgatccact ctacgactct
     3061 cgctccgact ttgagatttt ccgagatctc tgccgccgtt tcggtaaaga gaaagagtac
     3121 agccgtggaa tggacgaaat gcagtgggta gaaaaactct acaaagattg tcgccgtgaa
     3181 aacagaggta aatttgaaat gccggagttt gctgaatttt ggcaaaaagg ctatgtgctg
     3241 ttcccagagg gcaaaccttg ggttcgccac gccgatttcc gtgaagatcc ggaattgcac
     3301 gcacttggca caccgtccgg ctttatcgaa atttacagca acaaaatcgc ctctttcggc
     3361 tatgacgatt gcaaaggtca cccaatgtgg tttgagaaag ccgaacgttc acacggcggt
     3421 aaaaattccg acaaattccc gtactggttg caatcagttc acccggacaa acgcttacac
     3481 tctcaacttt gtgaatcgaa agaactgcgt gaaacttaca gcgtgcaagg gcgtgaaccg
     3541 ctttacatta acccacaaga tgccgccaaa cacggcattc aagacggaga tttagtgcga
     3601 gtgtttaacg accgtgggca agcgattgtg ggggcggtgc tttccgacaa cttcccgacc
     3661 ggcgtagtgc gtttacaaga aggggcttgg tattcacccc ttgacgaaag cgtgggggcg
     3721 attgacacct atggcgaccc gaacacaatg accctcgaca tcggcacgtc caagttggca
     3781 caagcggttt ccgccaacac ttgcttggtg aacatcgaga aatttatcgg caatgccccg
     3841 gctccgaatg gctttaacgg tgcgattgag gtaacggctt aatgacgttg gcaatcagtc
     3901 gtgaagaacg gcaatttatc tatggctggt ttaacgcaat gctcgcccga gaactttcgg
     3961 acgagcagtt aaatgcctta caagcgggcg aatttgacga tttttttgca tacctcagcg
     4021 aattgggttt tgccgaacag gttgcaaaat ttcaagcaga agtgaccgct tgtaggcagc
     4081 tggaatttcc tcgtctagaa ctggcggctg actttgccca actgttttta ttggaaggca
     4141 atctcagtgc cattccttac gcctccgcct atttaagcgg cgaagcgtta gcgaaaaatt
     4201 tggcggaaat ggacagactg ctgggcgaat ttgggctgca agttaatcga gaaaccaaag
     4261 agccgagcga tcacctttgc gtttatctca ccctttttga ccgcttgctt gctgaaaaac
     4321 cgttggaaac gcaacagcaa tttctgcaaa accaactgat gagctggctc cctgcgtggt
     4381 tcgccaaagc caaaaccgtc aaaactaaca ccggcgttta tccggcgttg ctaaggttgt
     4441 ttgaacaggt gttgctgaag gaacaaagat aaagttattt atttgagaat gatttgtatt
     4501 gagcgaattg agaaaggaag ttaaaatttc aacttccttt tttattggct ggatttatcc
     4561 acattattac aagcggttat ttttataaaa aaatttacaa aggagacatt aatgcaaaat
     4621 aataaaacca cctacctaaa ttggtacgat ttatgcgtgc taaccctgat cctgtttggt
     4681 gaggcaattt atacctcaac ccagcaatat ttcatcacca ccgaaatgca aggtaatttt
     4741 gaagaaaatt taaccttttc aaatgaacaa aattattggg cattactgac gcaacttgca
     4801 ttgttgctga ttgcaatggg ctatctaaaa tggcggaatt ttgatttcag ccgttgggtg
     4861 attcgtccct cttggctggc tttttttagc ggtatcgggt tgtttatctt gctctcgtta
     4921 gcgatggatc tctattttga aacattatat ggtgtttaca acctagtgta tccggagcca
     4981 ttttgggcag tattgagaga agtgaatatt tctaccgtgc tgtatgcgat tttaaacggc
     5041 ttttatgaag aaatcttttt cctcggtatt tgcttggcgg ttaaacctga atatttaaaa
     5101 tgggcggtga tttattcact gattattcgg gtgagttttc atacctatca aggaatggaa
     5161 agtgcgttag gattaggaat ttggctcggt ttaattattt atttgctcta ctcacgctca
     5221 aagcagaaaa acctatttcc attttgggtg gcacacagta ttgcggatat tttggggctg
     5281 agtttgttgg cttattttta gttaaaggtg ctacatttaa gcggcataag ttgatagagc
     5341 tgatcgtacc agtagcataa aaacattatt atttgtatgg aaaggtgctt ttaggttaca
//
LOCUS       DANMGB010000157         5398 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.157, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000157 DANMGB010000000
VERSION     DANMGB010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5398
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.157"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            302..1306
                     /locus_tag="PXG19_002128"
     CDS             302..1306
                     /locus_tag="PXG19_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6067392.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1361..3211
                     /locus_tag="PXG19_002129"
     CDS             1361..3211
                     /locus_tag="PXG19_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6067393.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3307..3861)
                     /locus_tag="PXG19_002130"
     CDS             complement(3307..3861)
                     /locus_tag="PXG19_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL6067394.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(3928..>5398)
                     /locus_tag="PXG19_002131"
     CDS             complement(3928..>5398)
                     /locus_tag="PXG19_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL6067395.1"
                     /translation="NFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGNAAVA
                     DNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTAIVPN
                     AYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYDLGYG
                     FVLGAGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAGIAAG
                     NTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLKGDKW
                     ALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAEIDGT
                     LRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTENFNDS
                     QRIALGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTPNLSA
                     DVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         1690 a          980 c         1157 g         1571 t
ORIGIN      
        1 tatatttaga atgtaaacaa acatgagtcg attttatgtt caaagagctg taataagacg
       61 gaataatgtc agaccaagat agatactttc aagtaaaatc aagcataaaa atgattttca
      121 gactttacaa atctgaaaga atgtgtaaga tcaggattgt ccgaaattcg gatggaaaat
      181 cccagtggat gtattggctg gatacatcat aataactatg tatttgtgaa tgttatttga
      241 atgattctac gtagttgatt caaaatcagc agtgcggtat ctgcatgcta atgatgaaaa
      301 aatgccgggc gatgcaaata aaattatctc taacggcacc agtgccggag gagcattatc
      361 tactttgtta ggagcttcag ctgatcatta cgactatgag ccttatttga aagaggcggg
      421 ggcattgaat gccagtgaca aaatttttgc agtttctgcc tattgcccaa ttaccaacct
      481 tgaaaatgcg gatatggcgt atgaatggca atttaatggt gtcaatgaat atagccgaat
      541 cgatatgagt cgattaaatg cagcagagtt taacgaccgc tcaaaaccaa aaccaaagcc
      601 gaaaattgaa ggctcgttaa atgaggcgga aattaaagtt tctaatgaat tagcagaacg
      661 ctttccgact tatttgaaca gtttgcattt ggttgatgag aaaggcaatc ctttaacact
      721 tgatccaaaa ggcaacggct cgtttaaaga ttatttatct gaagtggtaa aaacggctgc
      781 aaataaagcc tatagaggtt tagttcaaga tagcgaagag caaaaagcct ttcaacaaat
      841 tagttggctt tcatttgaga aaggcaaagt cagcagtgtg gactggtttg gttatgtgtt
      901 ttcagataaa cggatgaaat caccacctgc atttgatgcg ttaaatggaa gttcgggcga
      961 gaataattta tttggcacag acacggaaaa taaccgccat tttacgcttt atagtgcgga
     1021 acgttctgcc aataaagatc tcaatttagc cgatccgcaa atcgtgaaac ggatgaaccc
     1081 gatgcactat ttggataacc caaatgctgc ggaacattgg cggattaggg tgggaacggc
     1141 agatagagat acctcgctgg caatttctgc aatcttagca ataaaactgc aaatggcagg
     1201 caaaaatgtt aattatgaaa ccccgtggaa tgtaccccat tcaggtgatt atgatgtaaa
     1261 tgaattattc ctatgggctg atgagctagt caaaggcaaa aagtaaaaaa tagagtaaaa
     1321 taaagcagat ctgatggtct gctttttgtt ttgaggtcgt atgcaagtta aaaaatttag
     1381 ccaaaaatat attaattggg tattaaagct agggcggtta aaagcttctc ttttaggctt
     1441 ttttatggtc gctctttcgg caattttaat tcaaagtagc ttaacctatc tttttattgg
     1501 gcgagtagtc gtggtggata ttttacgctc catcgctttt ggtttaattt ctgcgccttt
     1561 tgtgctttat ttcttcacgt tattggtgga aaaacttgaa atatctcgct tgaaattaga
     1621 aaaagcagta agagatttgg aagaactccg ggaacaagat gcctatctta acgctaaatt
     1681 agaaaaaaac agccgtgata aaagcatttt aatggcgacc attagtcacg aacttcgtac
     1741 tccccttaat ggaattatcg gcttgagcca aattttgtta gatgataaaa ccaccgaaaa
     1801 acagcaagaa tatctaaaaa ctatcaatat gagtgccact gcattggctc atatttttgg
     1861 cgatattatt gatttagaaa aaattgatag tagccgaatt gaattggtaa gaaaagaggt
     1921 ggaatttgaa caactcattc acgatattgc taattttggg cattttatgg cgggcaataa
     1981 gcagattaat tttgaagtga agtatccgcc tgatttgccg aagtatatct atatcgacca
     2041 cgcacgcttg agccaaattt tatggaattt gatcagcaat gcggtgaaat ttacccctgc
     2101 aagcggtcga attttgctgg aaatttacca attagataaa gaacagttta gctttgcggt
     2161 gacggattca ggcatcggta ttccggaaaa agatcaacgc aaaatttttg atatgttcta
     2221 ccaagcggaa aactctaaag agaaaaaagc gcaaggtagc gggattggct tatcggtctc
     2281 gaaacgcatt gcgaagctaa tgggcggtga tttggtggtg gcaagccaag aaaatcaagg
     2341 ctcaactttt accctcactg tgcaggcaga aagcacggaa accaagccga tatttgctat
     2401 tcagcaacat tcccttaagg tgctattggt agaagacatt gaaatgaatg tggtggttgc
     2461 ccgagcaatg ttggagaaaa tcggttgcgt ggttgatgta gcaatgagtg gtgaagaaac
     2521 gttccaacat tttgcacaga acagctacga tctgatttta cttgatattc aactgccgga
     2581 taccaccggt tttgaaattg cacagcaatt aagattgcaa tatgaaaacg aggaaattga
     2641 ctatttaccg ctgttggttg ctttgacggc aaatgtgatc caaagccggc aggagtacca
     2701 agcacaaggt atggacgatg tgctacacaa accgctctct ttagatgaat taatgcgttg
     2761 tctcaaccaa cattttggag atgatttttt gcaaaaaaat gaagaaaaac agccgcttgt
     2821 agagagaggt tctgagaatt taccttatag cattacaatt cttaatgaat tgattggggt
     2881 aatggggaaa gagaatgtgc ttgccaatat ggatttattt gctgatttaa tgcccactta
     2941 tttggcaaat ttacagcgtt atttaagtga ttggcaaacc acaaattctg tggaaagccg
     3001 taaattaacg gcggacgagg ctcataagat taagggagca ttagcatcag tcggattaca
     3061 tcagctacaa caaactgctc agcttgctca atccgataac ggcgagcagt gggagcaaaa
     3121 tattgcacac tgggtggaaa tgatttgttc caaatggcag atggatttgc aattagctaa
     3181 ggaatatgtt agaagcaagg gggacattta gtaaatttga aatgttacga tggtgcaagc
     3241 gtccacgctt gtaccaattt taatatctga agcacaagcg tggacgcttg tgctatcaaa
     3301 acgtatttac catttcttgg ttttcggttt tacaaattca atgcctttat ctttataggt
     3361 aatatcttcc agctgtaata gaaaacgctt attcggcaag ccaccaccga atccggttaa
     3421 ggcttgattt ttccctaata ccctatggca aggcactaaa atcgaaatcg ggtttcgccc
     3481 aactgcaccg ccgacggctc gcatcgcact tggcttgcct agttgggtgg caatttcgcc
     3541 ataagtagta gtttgcccgt aagggatttc acgcaaaatt ttccaaactg attgctggaa
     3601 tggagtgcct tgcggggcaa gaaaatccaa ctgctgaaaa tccaatggct cgccggcaaa
     3661 atagcggtct aaaatttctt tggttttgca aaaaatttct aaaatctgac cacttgcagc
     3721 ttgagcggaa aggaaattat caagcgaggt ggtttgttgc tcttgcccta gctcaatgta
     3781 aatcaagcct tcttctgtgg ctaaaagcaa taattgcccg atagggcttg ggtagtaatc
     3841 gtagtaaatt tgagatttca tgtttttatg ccaataaaaa aagaggtgta attgatttta
     3901 cacctcttta aaccttaatt catcaaatta gaatttgtag tttacgttta aaccgtaaag
     3961 atttgcacga gctttgctct tgaatgtggc taaaccgtct tcagagaagg tcaggttgct
     4021 accacgaaga tgtgagtaac ctacatcagc agataggttt ggcgtgaaac gcacggttgc
     4081 acctacagaa taccaagcac gatcagtgtc cggaattgag attgatggat gagttacact
     4141 tgcactttca tcaaatgcta cacctgtacg caatgttagc atttcattca catcataaga
     4201 caagcctaat gcaatacgtt gagagtcatt aaagttctcg gttttgtgca ataggcggtt
     4261 accttgcata tcataagctt ctaggctttg gaatttgctc cagtctgtgc gtttatagct
     4321 gtattgtgca gcaagtttat cggttagttt gtggtaacct gacacttccc agaatgccgg
     4381 taggcgtaat cttagtgtac catcaatctc tgcaccgccg gtaatggtat ctaccatctt
     4441 aggaataact acaggaacgg tattagaata tttgccttta aatttaagat caatttcaga
     4501 gtggtaagta aaacctaaac ggtttctttc attgatatta taaaccaagc caacattcca
     4561 acccaatgcc catttatcgc ctttaagttt atgaattgtt gaacttgcat tggtattttg
     4621 aatgccatta accaaacgtt ctaattgagc agaattcgtg atggtttggt ttaaattttg
     4681 agattttaat aaaccgttta cttgagctaa tacttgtgtt ttttgagctt caagagcggt
     4741 attacctgct gcgatacctg cctcaagagc ttttaaacct tgaattgcac tttgtacttg
     4801 tactttcttg tcttccaaaa attgtttagc tggagcaaaa cgtgccgcac cggcacctaa
     4861 gaaacgtcct aattctgctt ttgcgtgtac tgcattcaaa cctgccccta atacaaaacc
     4921 ataacctaaa tcataagccg cactaaaatt aacattcaca gcacttaatg atgtacgacc
     4981 acctaagaaa ccagcagaat agttagggtc aaattcagat atcaaaccat aatttacatt
     5041 tacgccacca ccaatagaaa ggcgctcatt gataggtgaa acgatataag catttggaac
     5101 aatagcggta ggaatgacat ttttatgtga ggcatctgca cctgtagcat tgagctttcc
     5161 atcaatattt acatcagcat ctacgaaaat accaccggca gaaatttcgg tttgtttaaa
     5221 taacgtcatt aacgcagggt tggttgcaac aacagaagcg ttatcggcta cagcggcatt
     5281 acctgcgtaa gctctaccta aaccggatgt tgaaatttca gctaattgga atgcggcagc
     5341 agatgcaccg gctgagctga atgctactaa tgaagcgatt aaagttttgc taaagttt
//
LOCUS       DANMGB010000158         5296 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.158, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000158 DANMGB010000000
VERSION     DANMGB010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5296
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.158"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..625
                     /locus_tag="PXG19_002132"
     CDS             <1..625
                     /locus_tag="PXG19_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL6067396.1"
                     /translation="PKQVHFADYLNYAIFADFLEKNQVNYNLNIPNELSSFANTLWQE
                     KKIRLLLNPQGSMREISTQELSELLSMIDKRYVQHISCLLTNTTNSAEYLSKIKAPFE
                     ISLAPNSDILGYCALVNSADIVIAVDGGGVHISCALGKKLLSFYANHPANIARWYPKP
                     KKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNHQFAKLIEKYTAC"
     gene            complement(680..892)
                     /gene="rpmE"
                     /locus_tag="PXG19_002133"
     CDS             complement(680..892)
                     /gene="rpmE"
                     /locus_tag="PXG19_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL6067397.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            1255..3261
                     /gene="tkt"
                     /locus_tag="PXG19_002134"
     CDS             1255..3261
                     /gene="tkt"
                     /locus_tag="PXG19_002134"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL6067398.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            complement(3387..4457)
                     /locus_tag="PXG19_002135"
     CDS             complement(3387..4457)
                     /locus_tag="PXG19_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL6067399.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(4472..5197)
                     /gene="fadR"
                     /locus_tag="PXG19_002136"
     CDS             complement(4472..5197)
                     /gene="fadR"
                     /locus_tag="PXG19_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL6067400.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
BASE COUNT         1594 a         1101 c         1025 g         1576 t
ORIGIN      
        1 tccaaagcag gttcattttg ctgactatct caactatgct atttttgctg attttttaga
       61 aaaaaatcag gtcaattata atttaaacat tcctaatgaa ctaagcagtt ttgcaaatac
      121 gctatggcaa gagaagaaaa ttcgattact attgaatcct caaggtagta tgcgtgaaat
      181 ttctactcaa gaattatcag agctattatc tatgattgat aaaagatatg ttcaacatat
      241 tagttgtttg ctgaccaata caaccaatag tgccgaatat ttgtcgaaaa ttaaagcccc
      301 atttgaaata agcctagcac ctaatagtga tattttaggt tattgtgcat tagtaaactc
      361 tgctgatatt gtaattgcag ttgatggagg tggtgtccat atttcttgtg cattaggcaa
      421 gaaattgctc tcattttatg ccaatcatcc agctaatatt gcacgctggt atccaaaacc
      481 taagaaagat gttgaaactt ttatggtgat cgcagataaa tggaccgagg ataataatga
      541 tactcgaggt ttttctctgg tagctcctgc aaaatggtta aatcaccaat ttgcaaaatt
      601 gatagaaaaa tacaccgctt gttaattcga tatataagaa aaacaaaacc ccgcattagc
      661 ggggtttgca ataatcaaat tattttgagc ttgggatgct gaaacgtttg ttaaagcgtt
      721 caacacgacc accggtgtca acaacacgtt gtttaccagt atagaacggg tggcagttgc
      781 cacatacgtc taagtttaaa tctttaccca ctgttgagcg agttttaact acattaccgc
      841 aagagcaagt tgccgtaatt tctttatatt ctgggtgaat accttgtttc attggggaac
      901 ctcataagaa gccatatcgc cgcctatctt gttagaatct ctaccgctga taggtaccat
      961 atgtaattaa taaaaatgtt gagcaaatgc tcaacgccaa aaagagtgcg tattttagat
     1021 aaatttgttg cctagatcaa ctactaaaca ttcgctttat caagaaaata ttgtattagg
     1081 aaaaaaccgt ctattaaaat caaatccaat caaaacaaat cacaatttaa tcattttttg
     1141 tgatacagat cacatttctc atttccattt ttgagttttt ctagcaaaat agtgtagaat
     1201 ccaattcgat atcctttcca ttttatataa cattctcgat taggagtaac acaaatgaca
     1261 gaacgtaaag tgctagcgaa tgcaattcgt tttttaagta tggatgctgt acaaaaagct
     1321 aactcaggcc acccaggcgc accaatgggt atggctgata ttgcagaagt tttatggcgt
     1381 gattttttaa aacacaatcc aactaatcct aaatgggcag atcgtgaccg ttttgttctg
     1441 tctaacggac acggttcaat gttaatctat agcttacttc atttaaccgg ctatgatctc
     1501 tctattgaag atttaaaaca gttccgtcag ttacattcta aaacacctgg tcaccctgaa
     1561 tatggttatg caccgggtgt tgaaaccacc acaggcccgt taggtcaagg tattaccaat
     1621 gcggtcggta tagcgattgc ggaaaaaacc cttgcagcac aatttaaccg tgaaggtcat
     1681 aaaattgtcg atcactacac ttacgctttc ttaggcgatg gctgtttaat ggaaggtatc
     1741 tcacacgaag cttgctctct cgccggtaca ttaggcttag gcaaactgat tgctttctac
     1801 gatgataaca atatctctat cgacggccac gttgatggtt ggttcactga tgataccgca
     1861 caacgctttg agtcttatgg ctggcaagtt atccgtaatg tcgatggcca taacccagaa
     1921 caaatcaaat ttgcgattga aaatgcacaa gccgaaaccg agcgtccaac tttaattatt
     1981 tgtaaaacca ttatcggcta tggttcacca aataaatcaa actctcacga ttgccacggt
     2041 gcgccattgg gtgatgctga aatccaagcc gctcgtgaat ttttaggttg ggaacatgcc
     2101 ccatttgtga ttccagctga aatttataca gagtgggatg caaaagcaaa aggtacatta
     2161 gcagaaaaag attggaacgc taaatttgct gcttatgaag cggcataccc tgaactagcc
     2221 gctgaattta aacgccgtta cgcaggcgaa ttaccggcta actgggaagc tgaaagcaaa
     2281 gcttttattg aaaaattaca agcaaatccg gcaaccattg caagccgtaa agcatcacaa
     2341 aatgcaatcg aagcttacgc gccaatctta cctgaattcc tcggcggctc agctgactta
     2401 gcaagctcta acttaacctt atggtctggc tcaaaaccga ttcgtgcgga acacaatgta
     2461 gatggtaact acatcaacta cggcgtgcgt gaattcggta tgtctgcgat tatgaacggg
     2521 attgccctac acggtggttt cattccttac ggtgcaacct tcttaatgtt ctacgaatat
     2581 gcacacaatg cggtgcgtat ggcagcctta atgaagcaac gtgccttatt tgtttataca
     2641 cacgactcca tcggtttagg tgaagacggc ccgacccacc aaccggtaga acaaactgct
     2701 tcattacgcc aaattccaaa cttagaaacc tggcgtccgg cagaccaagt agaatctgct
     2761 gttgcttgga aagcggcggt agaacgtaaa gacggcccga cagcactaat ctttacccgc
     2821 caaaatctgg ctcaacaaca acgtactgcg gagcaattag cgaacatctc tcgtggtggc
     2881 tatatcttgc gtgaatgttg cgaaaaaggc agttgcccgg atttaatctt aattgcaacc
     2941 ggttctgaag tagatttagc aatgaaagcc gctgatgtgt tagatgcaga aggcgtgaaa
     3001 gtgcgtgtag tttcaatgcc aagcaccaac gtgtttgaca aacaagatga agcctatcgt
     3061 gaatcggtat taccacgttc agtcactaaa cgtgtggcga ttgaagctca attagctgac
     3121 ttctggtata aatatgtcgg ctttgatggt cgaattgtag gtatgaatag ctttggtgaa
     3181 tccgcaccag cagatcaatt attcaaactc ttcggcttta ccgttgaaaa cgtggttgct
     3241 aaagcaaaag aaatcttata atgaaacaat aagataaaga aaagcgggaa ttaacttccc
     3301 gcttttttgt tgaacaactg ttatgataag cggtgaaatt tcagcgattt tttgcaaaaa
     3361 attagcgaaa tatgaccgct tgtaagctat aacatttcag cttgagcaag aattttttct
     3421 tgctctaaag ctaatttttc cagttttcgc tgttctttac gctcttcatc aaccgcttcc
     3481 cacgcatcat aggcttgcac aattttggca accacagggt ggcggacaat atctttgctg
     3541 tcaaagaaat taaagctgag ttccggcact tcttttagca cttccattgc gtgttttaag
     3601 cctgattttt ggctacgggg caaatccact tgggtaatat cgccggtaat caccgctttg
     3661 gaattaaagc caatacgggt taagaacatt ttcatttgct cggtagtcgt gttttggctt
     3721 tcatctaaaa tgatgaacgc atcgtttaaa gtacgccctc gcatataagc aagtggggca
     3781 atttcaatca caccacgttc catcaacttt tgagcttttt caaagccaag catttcaaac
     3841 agggcatcat ataacgggcg taagtaaggc tcaatttttt gccctaaatc gccgggtaaa
     3901 aaaccgagct tttcaccggc ttccaccgcc ggacgggtaa gtaaaatacg gcggatttct
     3961 tggcgttcaa gcgattccac cgctgccgct accgctaaaa aggttttgcc tgtgccagca
     4021 ggcccgatac caaaactgat gtcgtggctt aatatatttc gtaaataggc ttgttgatgt
     4081 tcgctacgag gtttaatcac ccctcgcttg gttttaatcg ctatttcgcc ttgcgagccg
     4141 gcttgccatt ggttttgtag tagcattcgg ctttcctgaa tcgccaaatg tatatcttct
     4201 aagtccaatt ccttaatttt gcctttaatc ggggcagttt cattatacag ttgcttaatc
     4261 agcttcacac tattttgaac caaggtagca gaatagtgat tgtcatcttc cgattgaatc
     4321 gtaaagttga agcctgttcg agcaataatg agattaaaac ttttttcaat taaggctaaa
     4381 tgctcatcaa atgcaccaca aagcgattgc agacgagcat tatcttgcgg ttctaagcta
     4441 aaaataattt cgttcaaaat tctaccttct gttaaagctg accaaagctt tcaggaatat
     4501 tagcggataa tttttgccaa atttcaccac tagattggcg atttttagcc atacaagcgg
     4561 ctgctttttc actatctttt gcaagacaag tacataataa tgaacggtaa aagcttaacg
     4621 ttaattgacg attattttca tcagcaaaga aaatttttgc gacttgatga tacattgatt
     4681 taaagctatt taggatcaac gcatacacag gcttattggc taaaaaagta aattgtctga
     4741 ataacttata atcaaattca gcataagcag ctgctgtatt ttctaattca tctagtccat
     4801 caaagagttt agcactttct tcaggagcaa ggtaaatcgc ttctggaata taagcctccg
     4861 ccatacgagt acgtaatgac accacattgg caatcaccac tggaagatag cttttatcta
     4921 gcttaataat agtgccaata atattaggcc ccgaagtttc ccaaatatca ttcactcttg
     4981 ttggcttgcc gtgctgaata cttaaccaac cttctcgcgc tagacgttgt agtacttcac
     5041 gtaaagttgt tcttgttacc ccaatgcgct ctgctaactc tcgctcggca ggaagatcag
     5101 agccggcagg gaaatgatta ttccaaatac tctttacaat atattcttcc gctaacgctg
     5161 ccgggctttg cgcttttaaa atatcactgt gacccattaa tgccccccaa gcaaaaaata
     5221 tgcttatcta aaatctaact attctttatt tctaatcaat tattgcgact aaaaagttca
     5281 gtaatactat tatcct
//
LOCUS       DANMGB010000159         5262 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.159, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000159 DANMGB010000000
VERSION     DANMGB010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5262
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.159"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(6..1289)
                     /locus_tag="PXG19_002137"
     CDS             complement(6..1289)
                     /locus_tag="PXG19_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6067401.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            1455..5171
                     /gene="metH"
                     /locus_tag="PXG19_002138"
     CDS             1455..5171
                     /gene="metH"
                     /locus_tag="PXG19_002138"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6067402.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
BASE COUNT         1533 a         1218 c         1289 g         1222 t
ORIGIN      
        1 aatagctatt cagcttgtcc ccaaggagca accttaaaca acattagcat tcccggaata
       61 ccaataaaga aacagagcca gaagaattgg taatagccca tcatttccac taaatgccct
      121 gtgtatgccc ctaacatttt gcttggtagg gcagcaaggc tggtgaaaat ggcgagctgc
      181 attgcagtgt aagcgggatt agtttcacga gccataaagg caacgaaagc cgctgtgcct
      241 aaacccacgc ccagatattc acctgccatc actaagccta atttccaaag ctcggcagct
      301 ccaatgcttt cggtagggaa atgctcaaaa ctggcaaggt aagcgaagcc taaaatagta
      361 attaattgta caaatccgaa cagccataag gctcggttaa cgcccaattt caacattgcc
      421 acgccaccaa taataccgcc gccaatgctg caccaaagtg aagttatttt cacaatgccg
      481 gcaatgtgcg atttagtaaa acccatatcc aaaataaatt tggtttgtag cgtagttgca
      541 agggaatcgc ctaatttata taggaaaata aatagaatca gcccaatcgc tcctgccacg
      601 cctttacggg tgaaaaactc tttgaacgga tcgacaaacg ccatataaaa cggcttagaa
      661 cggtcgattg gcttatgatt cggctcggca gcgattatta gcgtaacgaa taagcaaggc
      721 actaaaaaag cagcggtaat cagaaatacg gtatcccacg catagtgatc ggctaaaaat
      781 aatgaaagcc cacccggaat cagccctgca atacgataag cattaacgtg gatagagtta
      841 cctaacccga gttcgttatc cgataaaatt tcacgccgaa aggcatccac cacaatgtct
      901 tgcgtggcgg aaagaaaagc taatagcaca gaaagagtaa caataattga aatatcttgc
      961 actgggttga acaagccaaa gctggctaaa atcaccaata gcccgatttg tgaaatgaaa
     1021 atccagcttt tgcgtctgcc taaaaaaggt ggaaagtagc gatctaacaa tgcagcccac
     1081 aggaatttcc acgtgtaggg caaagaggtc agggtgaagg cggcaatagt tttaatatct
     1141 aaattggcac tggttagcca agccggcatt agctgaatta acacaaacaa cggtaaaccg
     1201 gaacaaaagc cggtgtaaac acaaagcaac atatttttag taaaaatctg ttgccagata
     1261 gagcgtttgg gttcgtgaca agcggtcata tttttcctac attttgcaaa ataaaaaggg
     1321 gaagaactga gccaatatag cataatttta aaggcgactc taaccctttc catttcgtca
     1381 cagataaggt ttgacagcct tgcgacatat ttctattatt ccttttaatc aaactaaaaa
     1441 actggaagca gagtatgaac acgcagcata gaaccgaatt acttcaaaat gcccttaccg
     1501 aacgcattct tatcttagac ggtgcgatgg gaacgatgat ccaaaaatat aaactaaccg
     1561 aatctgattt ccgaggtgaa cgttttaaaa acagtaccat cgatcttaaa ggcaataacg
     1621 acctactcac actcacccag ccactcctga tttctgctat tcacgagaaa tatttagccg
     1681 ccggtgcgga tattatcgaa actaatacct ttagtgcgac gaccattgct caagcagatt
     1741 atgaacttga aagtattgct tatgagctga atcttgtggg ggcaaaactt gcccgtcttg
     1801 ccgccgataa attctccatc cctgaaaaac ctcgttttgt tgccggtatt cttgggccga
     1861 ctaaccgtac ttgttcgatt tcccctgatg ttaatgaccc cggtttccgt aacattacct
     1921 ttatgcaact ggtggaagcc tatgccgagg caacccgtgg tttgattgaa ggtggggcgg
     1981 atctgattat gatcgaaacc attttcgata ccctgaatgc caaagcggcg gtgtttgcaa
     2041 ttgaaacggt gtttgatgaa ctgggcgtga aattgccgat aatgatctcc ggcaccatta
     2101 ccgatgcctc agggcgaacg ctgtcagggc agaccacgga ggcgttttat aactcgctcc
     2161 gccacgccaa accgctgacg ttcggcttga actgtgcgct cgggccgaag gaactccgcc
     2221 cttatgtaga gatgatgtcg aaaatcagtg agacttttgt ttcggttcac ccgaatgccg
     2281 gcttgccaaa cgcttttggc gggtacgatt taggggcgga agagatggcg acttacatca
     2341 aagagtgggc agaactcggc tggctgaata ttgtcggcgg ctgttgtggc accacgccgg
     2401 agcatatcca agcctttgcc gaagcaacca aaggcgttgc gcctcgtaaa ttacctgaaa
     2461 ttccaaccgc tatgcgtttg tcgggcttag aaccgctgac gattgacgat aattcgctgt
     2521 ttgtgaatgt gggcgaacgc aataacgtca ccggttcggc aaaatttaag aagctgatta
     2581 aagaagaaaa atttgcggaa gcgattgaaa ttgccatcag ccaagtggaa aacggggcgc
     2641 aggtgattga cgtgaatatg gacgaggcgt tgctcgattc caaaaaatgt atgacccgtt
     2701 tcctcaacat tcttgctacc gaacctgagg cggcaaaagt gccgattatg attgactcct
     2761 cgaaatggga ggtgatcgag gcgggcttgc aaacggtgca gggcaagccg atagtgaact
     2821 ccatttcact caaagagggc gaagagaaat ttattcacca agccaaactc tgccgccgct
     2881 atggggctgc ggtggtggtg atggcatttg acgaagtcgg gcaagcggat accgaagaac
     2941 gcaaggtaga aatttgtacc cgagcttatc ggattttggt tgatcagctc ggcttcccac
     3001 cggaagacat tattttcgac ccgaacattt ttgcgattgc caccggtatt gaagaacaca
     3061 ataactacgg cgtggatttt atccaagcct gtgagcggat taaacgagac ttgccacacg
     3121 ccaaaatttc cggcggggtg tcgaatgtct ctttctcttt ccgaggcaac aatgtggtgc
     3181 gtgaggctat tcacgccgtg ttcctctact atgcgatcaa agccggaatg gatatgggga
     3241 tcgtgaacgc agggcagttg gcgatttatg acgacctcga ccctgaactg cgagaggcga
     3301 ttgaagatgc ggtgctgaac caccgtcatg acactaccga ccgcctgttg gaaatttccg
     3361 aaaaatatcg gggcgtaaaa gtagaaagtg ccgatgaaag tgccgccgag tggcgaaatt
     3421 tacctgtggc agagcgttta aaacacgccc tcgtaaaagg cataacgacc tacattattg
     3481 aagataccga agaggctcgc cagcaatttg cctctccgct ggaagtgatt gaagggccgc
     3541 tcatggcggg tatggacgtg gtgggcgacc tgttcggaga cggcaaaatg ttcctgccgc
     3601 aagtggtgaa atcggctcgg gtaatgaaac agtccgttgc ctatttagag ccgtacatca
     3661 acgccaccaa gcagaaagga tcgagcaacg gcaaaatggt gatcgccacc gtgaaaggtg
     3721 atgtacacga catcggcaaa aacatcgtta gcgtggtgtt gcagtgcaat aactttgaag
     3781 tgatagactt aggcgtgatg gtgcctgccg atgtaattat cgaaactgct attcgggaga
     3841 aagccgatct cattgggtta agcggactaa ttaccccatc gctggacgaa atggagtatt
     3901 ttttaggtga aatgaaccgc ttgaagctcg atattccggt gctgattggc ggcgcaacga
     3961 cctcaaaaga gcatacggcg atcaaacttt atccgaaata taactacccc gtagtctata
     4021 ccgccaacgc ttcacgttgc gtaaccgtct gtgcgacctt gatgaaccct gaggcaaaag
     4081 ccgaattttg ggaaaaaacc aaagccgaat acgaagaaat tcagcgtaaa tttgccgttc
     4141 gcaaaccact tcgcaacggt ttatctattg aggaggctcg agccaatcgt tttgacggat
     4201 ttagtggcga atgggcagac tatgtgccgc caacgccaaa acagaccggc attatcgagt
     4261 acaaaaatgt accgattgcc accctacgca aatttatcga ctggtcgccg ttctttatgc
     4321 tctggggctt aatgggcggt tatcctgatg cctttgatta tccggaaggc ggcgaagagg
     4381 cacgccgtgt ctataacgat gcccaacggg tgctggacga atttgagcaa aacggcaagc
     4441 tcaacccaag tgggattatg ggcattttcc ctgccgtgcg tgagggcgat gatattgcaa
     4501 ttttaaacga agatcgcacc gcttgtatcg gcaaatccta ccacctccgc caacaatccg
     4561 aacgaggcaa aaacagcaaa agcccgtaca acctctgttt aagcgatttt atcgccgacc
     4621 gagaaagcgg acaacaagac tggttcggaa tgttcgccgt ttgtgccggc attgaagaac
     4681 actatttagt tgaaagctac aaagcggcag gcgatgacta caacgccatt ttgctccaag
     4741 ccgttggcga ccgcttggca gaagcaatgg cggaatacct acactttgag ctacgtacca
     4801 aagtctgggg ctacaccgtg gaagacgaag acaacggacg cttaatccgt gaagaataca
     4861 tcggcatccg ccctgcgccc ggctacccaa gctgcccgga acacaccgag aaacagataa
     4921 tttgggactt gttagaggtg gaacaacgca tcggcatgaa actcaccgaa agctatgcca
     4981 tgtggccggc agcaagtgtc tgcggctggt acttcaccca ccctaccagc aactacttca
     5041 ctctcggcaa gattgatgaa gatcaggtgt tggattacgc caaacgcaaa ggctgggacg
     5101 aactcacggc gaagaaatgg ttaagtgtgg cgatgaaaca agatgtcaag tcgcaggctg
     5161 aaaacattta atgtagtggc gggttttaac ccgcctgtta caagcggttg gttttgagat
     5221 aaaatatgca aaatttatct ctcttttatg caaagaagtt at
//
LOCUS       DANMGB010000160         5230 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.160, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000160 DANMGB010000000
VERSION     DANMGB010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5230
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.160"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1943
                     /locus_tag="PXG19_002139"
     CDS             <1..1943
                     /locus_tag="PXG19_002139"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL6067403.1"
                     /translation="QQIEASKEYVAGVVKASDKAFGFLECDKKSYFIPPAEMKKVMHG
                     DSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVDHPSIKQTIPANT
                     HKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAPWWVTLARHEQPR
                     EPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIKQNGKRTGWRLVV
                     AIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCSLVPNEKRPALVG
                     FIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQSEETKQQIEWLH
                     QFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQMIEESMILANIC
                     CAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELAERYSAERLATLE
                     GYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYATWTSPIRKYGDM
                     VNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYARYLAPMVEQAVE
                     FECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELALYIKGEKAYQIG
                     QAVKVKLTEVRLETRSIVGNII"
     gene            2035..2835
                     /gene="apaH"
                     /locus_tag="PXG19_002140"
     CDS             2035..2835
                     /gene="apaH"
                     /locus_tag="PXG19_002140"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL6067404.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            2899..2975
                     /locus_tag="PXG19_002141"
     tRNA            2899..2975
                     /locus_tag="PXG19_002141"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2933..2935,aa:Val,seq:gac)
     gene            3203..4201
                     /locus_tag="PXG19_002142"
     CDS             3203..4201
                     /locus_tag="PXG19_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6067405.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            4479..4661
                     /locus_tag="PXG19_002143"
     CDS             4479..4661
                     /locus_tag="PXG19_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL6067406.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(4931..5221)
                     /locus_tag="PXG19_002144"
     CDS             complement(4931..5221)
                     /locus_tag="PXG19_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067407.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
BASE COUNT         1693 a         1170 c          998 g         1369 t
ORIGIN      
        1 aacaacaaat tgaagcaagc aaagaatatg tcgcaggcgt tgtcaaagcc tcagacaaag
       61 cattcggttt tttagaatgc gataaaaaaa gctattttat tccacctgcg gaaatgaaaa
      121 aagtaatgca cggtgattca gtgaaagccg tagtcaaacg tgatggcgac aaagaacagg
      181 tagaaattga ttcactactt gagccaatgc tggatagatt tattgcccaa gttcgcttga
      241 ataaagaggg caaattgcaa cttgcggttg atcacccaag cattaagcaa actatcccgg
      301 caaataccca taaaaaagcc actgaaaaat tagaaaatgg cgactgggtg gttgcacaat
      361 taaaaacgca cccattgcgt gacgaccgtt ttttctttgc tcaagttacc caatttatct
      421 gtaaagaatc tgataatttt gccccttggt gggtcacact tgcccgccac gaacagcctc
      481 gtgaaccggt cgcaaatgaa aaaaactatg aattacacga tgaattagct cgtgaagatt
      541 tatctcatct ttactttacc actattgaca gcccaagcac gcaagatatg gacgatgctc
      601 tgttcatcga accaattaag caaaatggca agcgaaccgg ctggcgttta gtggtagcga
      661 ttgctgaccc aaccgcttat atcccagaaa attcccatat tgaaaaagcc gctcgccagc
      721 gttgtttcac caactatttg ccgggcttta acattccaat gttacctcga gaactctcag
      781 acgatctctg ttcgcttgtc ccgaatgaaa aacgccctgc cctcgttggc tttattgaaa
      841 ccgatttaaa cggcaatctc attaaagaga caacctttac ctctgcttgg gtcgaatcaa
      901 aagatcgctt ggcttacgac gatgtttccg attatctcga aggcgtggaa aatgcgtggc
      961 aacctcagtc tgaagaaaca aaacaacaaa ttgagtggct acatcaattt actcaagccc
     1021 gcattcaatg gcgtgccgag aatgcgttgc tattcaaaga acaaggcgat tatacctttg
     1081 agttaaatga agatggctcg gtaaaagata ttcacgttga atatcgccgt attgcgaatc
     1141 aaatgatcga agaatcaatg attcttgcca atatttgttg tgcaaaattc ttaagccaac
     1201 atgccaaaac cggtgtattt aatacccatt caggttttga tccgaaaaat tatgaattgg
     1261 taaaatcatt tttactccaa actttagcca gcgatgaaaa tcgtgatgag cttgccgaac
     1321 gctactccgc cgagcgttta gcaaccttag aaggctattg ccaaatgcaa cgtgatattc
     1381 aagactaccc agagaaattc ttagagttgc gtttacgacg ttatttaacc ttcgctgaat
     1441 ttaaagccga agttgccccg catttcggac taggcattac cgattacgcc acttggacat
     1501 cacccatccg taaatatggc gatatggtaa accaccgttt aatcaagcaa gtgttacttg
     1561 gcaaacaaag ccaagcggtg gaagaatcag ttttaagccg tttacaagaa gctcgccgtc
     1621 aaaaccgttt agtagaacgt gatattgctg actggcttta tgctcgttac cttgccccaa
     1681 tggtggaaca agcggtcgaa tttgagtgcg aaattgcaga tgtttcccgt ggtggcttgc
     1741 gtgcgaaagt cataaaaaac ggtgctcaaa tttttgtgcc attctccagc ttgcacgaca
     1801 acaaagagga aatggaatac cgccaagaag aacttgcact ttatattaaa ggtgaaaaag
     1861 cctatcagat cgggcaagcg gtgaaagtga aactcaccga agtacgctta gaaacccgct
     1921 caatcgtagg aaatatcatt taaatttcaa gcggttatat tttgatgaga ttttgcaaat
     1981 tttctctaaa atataaccgc ttgtttataa ctttagggga acaaaggaga aacaatggca
     2041 acttatattg taggcgacct acacggttgc tttaacgaat ttcagctttt attagaaaaa
     2101 gtcaattata accccaagca agacgaactc tttttaacag gggatttagt cgcccgtggt
     2161 gaggactctt tagcctgttt acgttttgtg aaagactctg caaacaatgc caaaaccgtg
     2221 ctaggcaacc acgatttgca cttgcttggc atcaaacggg taaaaccaaa tgataagatt
     2281 gatgctattt ttgaggctaa agatcggctc gatttgcaaa attggctcag aaatcaaccg
     2341 cttgtaattc atcaccccaa acatcaattt ttgctgactc acgcaggaat cagccctgag
     2401 tgggatttag caactaccct agcttgtgcc aaagaggcag aaaaggtgct acaaagtgac
     2461 aattatgcgg actacatcgc ccaaatgtat gagaataagc ccgaacgctg gagtgaagat
     2521 ttgcaaggtg ttgaacgttg gcgttatatc atcaatgtgt ttacccgtat gcggttttgc
     2581 tacaccgaca agcggttaga ttttgactgt aaattaccgc ttgaacaagc ccctcaagaa
     2641 ctgctggctt ggtttgactt agataatccg ttatttacac agaaaaacat tatctttggt
     2701 cactgggcaa gcctaatggg caaatgcact cgtccaaaca tctatgcact tgataccggc
     2761 tgtgcttggg gaagccattt aaccatgctc cgttgggaag ataaacaaat ttttacccaa
     2821 aagcgtctaa aataaaagca ttcgaccaaa agcatattgc actaagttcc tttttccaat
     2881 agaatgcaca ccgttaatgc gactatagct cagttggtta gagcaccacc ttgacatggt
     2941 gggggtcact ggttcgagtc cagctagtcg caccattatt tttaagcctg aatatcccca
     3001 ttcaggctta accccaaaaa taccccttat aaatcaatag cttattgatt taaaacactt
     3061 ccccaagtgt agcataacat caataaaaac atcatttttg atatgaaaac ttgatattta
     3121 ttgatcgttt atgatctcta ttaacattcc tttgcacaca tttgcacact taaactgcac
     3181 acatacacaa aggaataaaa aaatggctac tattattaag aacggcaaca aataccgagc
     3241 acaagtccgc aaaaaaggca tttataaaac tgccactttc agcaccaaaa cagaggcaaa
     3301 ccgctgggct tacgctttag aggctcaaat tgatgccgga gaatataaca ccaccccgaa
     3361 cattcttttt gccgaattaa tcgacaaata cctcaaagag gtcactccga ccaaacgtgg
     3421 caaaagggaa gaacgctatc gcctgctaag aattgccggc agcaacttgg gaaatatacc
     3481 attaccggca ctcaccaaag agcatttacg ccaatggcaa aaccaacgct tgcaagaagt
     3541 gcagccggtt tccgtctcaa gagaaagagc cactttatcg gcactcttta caaaagcaat
     3601 ggaatgggat tatctcaaag aaaatcctct aaaaacgctg gaaaaaatca aaacgccacc
     3661 agcaagaact cgccgatata gcgatgagga gatagacaaa ctgatttttg tctccggcta
     3721 cagccctaac cagccaccgc tattaatgca acaaagagcc ggagcagcac tattatttgc
     3781 gattgagact gcaatgcgag cgggtgaaat tgctggttta aaatgggaac atataaacct
     3841 gcaggcacgc accgcatttt tgccacaaac caaaaacggt tattcacgca ccgtgccact
     3901 ctcaaccaaa gcaatagcaa ttttaaatca gttggcacaa cttgaaccga acaagcaaaa
     3961 cagtgttttc cagctcacca gtcgcagcct tgattcgaat tttcgcaagc tgaaacaaaa
     4021 agccaatcta cacaatgccg atctgcattt tcacgacaca cggcgagagg cactcacacg
     4081 tttgtctaaa tatctgacgg taatggagct tgccaaagta tcggggcatc gagatttaag
     4141 tattttgcaa aatacctact ataacccgga tatttcagaa cttgtgagca aactgcaata
     4201 aaaacaaaag ccgataaacg aaaatttatc ggcttttttg tatttattac ttgcaatgta
     4261 ggatacccta cattataata acctcacttt caagagacag cttgaaagtg agcgtaaggc
     4321 ttaaacctta cgaaatgaag aaggatagca caatgtttaa atacattatc ctagttgtct
     4381 tcttattagt ccttagctcc ccagcttact aatctgaagc aactcgctgg gggtgaaagc
     4441 tcccagctct tcaacaaaat ttataatagg gataaattat ggcaatgtca agaaatgaaa
     4501 tccaagctaa aagcgaggca aaacgaggaa taaagcaaaa atcctttaaa ctaccgcttg
     4561 aggtgatcgc agaaatcgaa gtacttagcc aaaaactcaa cattccacaa aaccagctga
     4621 ttattcaagc tattcaacaa ttcaagcaaa acaacccata aaacaaaagc cgataaataa
     4681 tgaaatttat cggcttttgt attttgaaat actttacaaa taatcgttat tatccatctt
     4741 tacaaatgcc agccaatgcg ttttgttatg tttaccgctt ttatgcccat agataggttg
     4801 gtattcgata acatttaaaa ttttcgatac agggattccc gattgtcagc aaacaatacc
     4861 gaggggttgt gcttattaaa gtgaaacatt cggctaccgc aacaagcatc taaaattatc
     4921 ttttttatca tcacttcacc ttccacatca aacaaaattt caccacttca ccggataccc
     4981 acttcttcgc ccccctgccc ttgcctcgta agccgtcaag ggcaatcggt ttcggaaaat
     5041 gtggactaga tacaacactt cggctggtgt gttctttagt gtagccgaaa tatgctgcta
     5101 catcgcccaa atcccacaat tcacggctat gctcattcac ccctttggtt tttaataacc
     5161 gctcaacctc acaaagtttt gcaaaaactt gctcattact gaccgcttgt aattgttcca
     5221 tttttaccac
//
LOCUS       DANMGB010000161         5213 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.161, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000161 DANMGB010000000
VERSION     DANMGB010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5213
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.161"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..252)
                     /locus_tag="PXG19_002145"
     CDS             complement(<1..252)
                     /locus_tag="PXG19_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067408.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFSVTFTALFTMMRLL"
     gene            complement(322..1455)
                     /locus_tag="PXG19_002146"
     CDS             complement(322..1455)
                     /locus_tag="PXG19_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6067409.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1586..2614)
                     /locus_tag="PXG19_002147"
     CDS             complement(1586..2614)
                     /locus_tag="PXG19_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6067410.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2626..4170)
                     /locus_tag="PXG19_002148"
     CDS             complement(2626..4170)
                     /locus_tag="PXG19_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6067411.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4221..5159)
                     /locus_tag="PXG19_002149"
     CDS             complement(4221..5159)
                     /locus_tag="PXG19_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL6067412.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
BASE COUNT         1400 a         1225 c         1084 g         1504 t
ORIGIN      
        1 taataaacgc atcattgtaa ataatgcagt aaatgtaact gaaaaaaaga aaattgctgc
       61 aatataatca atggtttttg tgagatatat ttccttttgc tgtatcgcaa tatagatagg
      121 cacttgatga acaagttgga agtaagcatc caaataaaca actatcaata tgaagcctaa
      181 aaaccattct gtttgcataa gaacattgat agggctgttt tttgtgctaa aaatttcttt
      241 aattgaactc ataatttttc cttaaatgta aaaaaacgta cctcaaccaa tttgagatac
      301 gtttctattt taatgtaatt attaaatctc actcacctcc acccaccttt tctcctccgc
      361 cgattttgct atcgcttcca atactctgga gattttatag ccttcttcaa aatcgggata
      421 catcgggtca tcagcggcga tgccgttgat gaggtcacgg atttccaccg ctttttggtc
      481 gttaaaaccg atgccgtgac cggcactcac acaaaaagca gcgtagtcgg gatgttccgg
      541 gccgactaaa atggttttga atccttggcg ggatttatcg tcatcgtgca aatagagttt
      601 gagttctgcc attcgttctt gggtatagct gagcgtgcct ttagtacctg taacgacata
      661 ggtcagcccc attttacgcc cgcaggaaat gcgggagctt tcgagcgtgc ccattacccc
      721 attagcaaat cgtatgagac tacttgcctg atcttcgttt tctactttga ttttttctgc
      781 tggattgtgc ggactagggc gttcttcaat cactgtttgc atatcgccga taacacgctc
      841 aatgtctgaa ccaaccaaat agtgtgcgat actgacaata tgtgcggcta aatctcccaa
      901 cgtaccaagc ccggctttgg ctttgtagca gtgccaatca atcggggtat tagggttggc
      961 gagataatct tcgttatgcg tgccgtagaa atgcaccacc tcaccaattt cgccgttttg
     1021 aataatttgg cgagccagtt gggtggttgg atttttgata tagttgaaac cgaccaaggt
     1081 tttaactccc gcttgttgag cggcaatcac catttctttg gcatcttggg cggtgagtgc
     1141 aagcggtttt tctgaataga cgtgtttgcc gtgtttaatc gcttctaagg caatttcttt
     1201 gtgcagaaaa tttggtgtac aaatgtccac cacatcgaca ttcggatcgg taaccaattt
     1261 tcgccaatcg tcagtagcac gctgaaagcc aaattctcgg gctttttgat cggctaatgc
     1321 ttggttgatt tcggcaaggt attccagttg gattttgcct ttaagtggaa acagggttgg
     1381 ggcttgagcg taggcaatgg cgtggcagcg accgatatag ccggtgccaa ctaagccgat
     1441 tttgatggtt ttcataatac tatcccagta gggtgcgttt gctaacgcac cattagaatt
     1501 ttcagtgcat tggcaaacgc accctataag aaagcggtct ggttttgcaa aatttttaca
     1561 aaatcagacc gcttgtgtta gctatctata atgctcctcg tctgctcttc gcataggtgt
     1621 cgaaggcaac ggcaaggatg atgattaagc ccataatgat ttgttggtag taagcggaaa
     1681 cgtccattag tactaaaccg ttaatcaata cacccataat aatggagccg atgatggtgc
     1741 ctgtgactcg tccgtatccc cccattaggg aagttccgcc gataaccact gaggcaatta
     1801 cacgtagctc aaaagaaacg ccggcaacgg attcggcact gcctaaacgg gcggagagaa
     1861 tgaaaccggc aagtcctgcc aatgctccga tcaccacata aacactgact aaggtacggt
     1921 taatattcac accggctaaa cgggctgctt ccggattgcc acctaccgag tacacatagc
     1981 gtccccagcg ggttttatgc aatgcgaagt aaccgataat ggcgactacg gcaaaaatca
     2041 ctaccggcac cggtacgcct aaaatatcgc cacgtcccca ccagcggtaa ccttcgtcaa
     2101 atccggcaat tggcgagccg ttatttaaca caagtgttaa accacgccaa attgtcatac
     2161 cgccaagcgt gataataaac ggtggcagtt tgagtttagt gacgcctaag ccgtgtaacc
     2221 aaccaatgaa agtgcctaaa cctaaacaga tactcaaacc tatcagccag ctcattccgc
     2281 cccaagcacc ggcttctagc gttaccgtat tatcgccttt gataatatag gccgcgaaca
     2341 ttgcggtaac agcaaggatt gagccgacag agagatcgat ccctgcagtt aagatgacga
     2401 aagtcattcc taccgccata atgccgaaaa tcgacacttc ggttaaaacg ttatagatgt
     2461 tgcgttgcga taaaaatgcc ccgttttgtg aagtgaagaa aataatcagt aagatcaaga
     2521 aaatcagtac gccgaaacgt tcaaagaagg cgataaaatc gatttttcct ttgtcatcga
     2581 ccatacccat attttttaga aattgcgttg tcatacaaac ctctcttatg ctgccgcttt
     2641 acgctgaacg ccaacagcca tcattgacat taatttttct tcggtggcat catcgccgtg
     2701 aatttcgcca gttacccgac cttcggaaag agtgataatg cggtcggaaa tcgccataat
     2761 ttccggtaaa tcggaggaaa tcactaatac cgcaacacct tgttttgcca tatcaaacag
     2821 cacttggtga acctcagatt ttgccccaac atcaatacct cgtgtcggct catcaacaat
     2881 tagtactttc gggttgagtg ccatacaacg ggctaaaatc actttttgct gattaccacc
     2941 cgataatttg cgggcttcaa gttcgctact tgccattttg atgcgtaacg cttggcggta
     3001 ggtttcgatt aaatcatctt ctttttgatt atcgacaaac aagttaccct tcaataattt
     3061 gcttaaaatc ggcagggtca tattggtttt aatcggtaaa ccgagaacta agccctcttt
     3121 tttgcgatct tccggcacaa gggcaacccc tttttccaaa gcatctaacg gcgaggtggc
     3181 agcataaggc ttaccgtcta ggctgatttc atcagccgta taattttcta ccccaaacaa
     3241 gcaacgggca atttcagttc gccctgcgcc aactaagccg gcgatcccta atacttcacc
     3301 ctcgtgaatg ttaaaagaga caccgtggag agcaatgccg tgtggatcga atgccggttt
     3361 ttcccgatgc agatttttca cagctaaacg tattggtcgg tgggtatggt gagtctcttc
     3421 tggtggacgg cgagtaaagg caacttcacg tcctaccatc attttaataa tttgatcgac
     3481 attcacattt ttgacttcac cctcaccaga atagcgcccg tcttggaaaa cggtgaaacg
     3541 gtcgcatagg gcaaacactt cgtttaagcg gtgggtcaca taaatcacgc taatgccacg
     3601 gctttttaaa tcacgcacga tttggtgtag tgtttccact tctttatcac ttaaggcagc
     3661 ggacggttcg tccataataa tcaacttagc gtttaaggtc attgcacggg caatctcgac
     3721 catctgctgt tgtgccacac ttaaacggga aacttgggtg tcaggtttga tatttaagcc
     3781 gagattatcc agcactaatt gtgcttcctc attcaccgct ttttcattga cgaataaacc
     3841 tttcaccggc tctctgccca aaaagaaatt ttcagcaacc gtcatattcg gtaacaagtt
     3901 aaattcttga taaatcgtta cgatgccttt gagttggcga tcaaacgggg aatcgctcaa
     3961 acttaaggtt tcaccgttaa agataatttc gccacttgtt tgtggctgag cgcctgaaag
     4021 tgcttttaat aaggtcgatt ttcctgcacc gttttcaccc aacaatgcgt gaacttcgcc
     4081 ttttcccaca gtcagtttca cgccattgag tgccataaca ccagagaaac tttttgtcag
     4141 atctttcact tcaagtaagg gagtagacat acaacctccg taaaaaaacg ccctccggcc
     4201 tcagccggaa ggcagataaa ttattcgctg atttctgcaa aacgttctgc ttcttgcaga
     4261 ttatctttca ggataatttt tggcggatag tccgcaccgc tcacttcttt gctctcacgg
     4321 atattgccaa ccacttgctc taatgcggtg cttaccgcaa aacttgggcg ttggtcagcg
     4381 gtgagataca accagccatc tttcacacgt gcaagagcct caggggttga gtcaaagccg
     4441 gttactaaaa tatcgccggc tttcaaacct tggctacgca atgcttcaat cgcaccaagt
     4501 gccatatcgt cattcgctga aataatcact tctggtttct cttttaaggt tggtaacaca
     4561 ctttcaataa tgcgtaatcc ctcagaacgg agccagttac cggtttgatc aaccacgatt
     4621 ttatatttgt caccaccggc agctaattca tcacgaatac ctttggtacg ttcaatgtta
     4681 gaggttgaac ccggctggcc ggttaaaaga ataatttttg ccccattcgg gtatttggct
     4741 ttcactgctt ttgcgacttc ttgaccgcct gtgtagttat ttgccccaaa gtgtggaacc
     4801 ggcttactgc tttcaacttt tcggtctaat gtcgcagcag gaattttttc tttgataatt
     4861 tcttccactg cacctgaaat cgcattcaca tcattcgggg aaatgataat gcctttagca
     4921 ccacgggtaa ttgcattttc taagtcagaa gcctgcttag tagaagaact ttgcccgtct
     4981 aatacttgca atttgatctc caacttttta ctggtttcta ccgctacttt ttgtagttga
     5041 acttcaaacg ggctggatag gttcggtaag ctaaatacca caagctcatc tttcgcaaag
     5101 ctgttcattg ctaagcctaa cgttaaagca ctcaatacaa atttaatacg ctttttcatt
     5161 acaaaatcct ctttttaaga tgggaattga cggcgaatat tgccaatgtt act
//
LOCUS       DANMGB010000162         5136 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.162, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000162 DANMGB010000000
VERSION     DANMGB010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5136
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.162"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            148..2784
                     /locus_tag="PXG19_002150"
     CDS             148..2784
                     /locus_tag="PXG19_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6067413.1"
                     /translation="MDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNP
                     VEKEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLE
                     KVIQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNN
                     VFAINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESK
                     KQPGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIG
                     VADEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEK
                     GVDNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLD
                     GENHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSG
                     LIANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAK
                     RGLIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQ
                     SALEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEH
                     LNQKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTAL
                     NIGLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMP
                     NQWIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSI
                     SPYIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMN
                     LDYSRVKSANLFGWKVNVGFSF"
     gene            complement(2925..3362)
                     /locus_tag="PXG19_002151"
     CDS             complement(2925..3362)
                     /locus_tag="PXG19_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL6067414.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3398..4318)
                     /locus_tag="PXG19_002152"
     CDS             complement(3398..4318)
                     /locus_tag="PXG19_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL6067415.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4334..5023)
                     /gene="ung"
                     /locus_tag="PXG19_002153"
     CDS             complement(4334..5023)
                     /gene="ung"
                     /locus_tag="PXG19_002153"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL6067416.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1709 a         1039 c          947 g         1441 t
ORIGIN      
        1 tttaacaaaa cacttattgc aattagcatt tctagttttt tatctattgc atacgctaca
       61 gaatcaatag agaatccaca acctatcatt caattatctg agagcctcag ctcaaaatat
      121 agtggcaagg gtgttaaact aggcgtaatg gatgagggct tcatggttaa acaccctcgc
      181 catagttcac atcttcatcc tcttattcat caattaacaa cacccgaagg cgaagtaaga
      241 atctacgatg caagttaccc tcaattcgag gtaaaccccg tagaaaaaga agatggaatt
      301 gatcttattc cttctcttga aacacacggt gcaggtgtag ctggtattat tgccgctcaa
      361 gcagataaaa ctcttggtga tggctatagt ggtggtattg caaagggagc tgagctttat
      421 gttgcaacga agtcatataa acgaacttta gaaaaagtta ttcaagatgc taagaaagaa
      481 ttagaaaatg caaaagacga agaggatgaa aaaacgccaa gtctggatca aatggcaaag
      541 aatgacttat tagcaagcaa agaaaaagaa atggcaattg aacgtgctga atgggcatcc
      601 gggctgaata aattactaga taataatgtt tttgcaatca ataatagttg gaatcctttt
      661 tctattagcg atgacatcaa tgttgtagat aaattttatc aatctatcaa gcaaaataag
      721 cacaatccgc tacttcaagc tattatgaga gccaaaaata gcaacacctt attagtcttt
      781 gctgctggta atgagagcaa gaaacagcca ggcgtaatgg ctcttctacc acgttacttt
      841 cccgagcttg agaaaaattt aatttctgcc gttgcggtag ataaagaaca aaaaattgct
      901 tcatactcta accactgcgg agcaagtaaa aactggtgtg tagcagcacc gggcgattta
      961 catgttttaa ttggcgttgc tgatgaacat aaaaaaccac aatatggctt aacaaaagag
     1021 caaggtacgt cattttcagc acctgctata actgcttcat tagcagtatt aaaagaacgc
     1081 tttgattatc tgactgcgac tcaaattcgc gatactttat tgactaccgc cactgattta
     1141 ggtgaaaaag gggtcgataa tgtttatggc tggggtctca ttaacctgaa aaaagctgtt
     1201 aatggcccaa ctcaattcct aaatgatgaa acgattaccg taactcgtga tgaccattgg
     1261 tcgaatccac tcgccagcca atttaaaatt acaaaaaaag gggacaaatc actgcattta
     1321 gacggcgaaa atcatttaga tacggtagca gttgaagaag gtagattggc cttaaacggt
     1381 aaaactaagg tgaaaacaat cagtaaccat gcaaatttag ctgtcaatgg aaccgaagtt
     1441 gagcaaaatt attcttcgtc tggacaaagc caattagaag tgttgggcaa atctgggcta
     1501 attgccaatg ctcaagccaa tatacattta gccggctcgt taaaaattga tgataaatta
     1561 acagaaaaaa ccgaagcagg tgatgtttca gcgaccgtag tacagttgaa agataaagca
     1621 acttatcaag gcggatttac acaattagtc gaaaacgaga atttagccaa acgagggtta
     1681 atccaagatc tctatttcaa agagagcgaa attatcgcaa aagtgaataa gccactaact
     1741 gatgagaaag ccgatacaaa cgggcaagcc ggtttagcat tattaaatgc gttaagaact
     1801 acacctattg cctatcgccg tagttggtat aacggttggc tgcaatctgc actcgaacaa
     1861 cgtaaattag ataatctgca ctatgctgta tctaacaata tttatgcaga tagccttgaa
     1921 ttgctacgta gccaaaatgc caaaggctta acccaagcac agcaacattt gtttacggca
     1981 taccatacac cactgcaaac gactgtttgg gctgaacatt tgaatcaaaa acaatcagcc
     2041 tcatcgaagc ataccgatgt taaacaccac caatcacaat tgggagtaaa ccacaaactg
     2101 gcagataaaa cggtacttag tgcaacactt tcacagcaaa aaaaccgctt agaaaaacca
     2161 tttgcacaag ctaccttaaa acaaacagca ttaaatattg gcttacgtta tcatttagat
     2221 aacgcttggt ttagtgaagc tacattgcaa tttgctcgcc agaaatatca acaaagccgt
     2281 cgatttgcta gccatcaact aggtactgca gaaaccagag gttcaacgct cggtggtgaa
     2341 atgcggatcg gttatcaatt tatgccaaac caatggataa ttgaaccaag ccttggcgta
     2401 caatggattc aaaccaaaat gaatggttta aatgaaagtg gcgaacttgc gactcaaacg
     2461 gctgcaatgc gttatcgtga tgtgaatatt gttccaagcg tgaaattaca gcgaactttc
     2521 caacttgagc aaggctctat ttccccttat atcgggctaa attacttgca tagattaaat
     2581 ggaaaaataa ccaaaattac cagtaacatt gcaggaaaaa cactgcatag tgaagcaacg
     2641 acgaaacgta atcgccaatt aaacggcgaa gtcggggtga aactgcatta taaaaattgg
     2701 tttactgcga tgaatttaga ttacagtcga gtgaaatctg caaacctatt tggttggaaa
     2761 gtaaatgttg gctttagttt ctaacttatt atggtgggac acaagcggtt aatttagggt
     2821 gaaaatttgc aaatttcact ctattttcaa ccgcttgaga gaaaaaacct tgaacaactg
     2881 ttcaaggttt ttgtttagtg ttctatgact aaataagaaa aaacttattg cttacggaca
     2941 aataaggtaa ttccctccac tttctggact tcaatcttat ctgctacttg taaattatta
     3001 cctataacac gccaagtcgt atcaccaaat tttcctcgag cgatgccatt aggtaagatt
     3061 tcaaccacaa agccttgagc tcctagcata gcatgctctc gagagttaag ggaactgctc
     3121 tgatcctctt tcttgtcttt tccatgctga tatttccacc aaataagact aaaaatagtc
     3181 gcaattatcg caaataacgc aatttgtaac gcttgcccta atgtaaaaag tgcaacgatg
     3241 aaagcaagaa taagcgaggc aaatccccac cacataataa agacacccgg taatactaat
     3301 tctaatgcaa gtagtacaaa gcctaatatg ctccagccaa tccaattaaa aaaccagtcc
     3361 atactccctc catatactca attaatccgg ttttaggcta tgagcttgtt ttattgcttt
     3421 ttaaaatttc agcaatacca gcaacagaac caatcaaatt tccagcttct aacggcataa
     3481 gtacaacttt actgttatct gaagaaccta tttctttcaa agcttcggtg tatttttgtg
     3541 caataaaata gttaatcgct gtagtatcgc ctttagcaat tgcttcagaa accatttgag
     3601 tggctttagc ttccgcttct gcggctcgtt cacgagcttc tgcctgtaag aatgcttctt
     3661 gtctttcacc ttctgctttt aaaatacgag attgtttttc cccttcagcc cgcagaattt
     3721 cagcttgtcg aatcccttct gcttcaagaa tatcagcacg tttattacgc tcagctttca
     3781 tttgagcgtt cattgccgca accagctctt tcggtggacg aacatcccga atctcaatac
     3841 gggtgacttt tactccccaa atattagtcg cctcatcgac aatggaaagt aatctaccgt
     3901 taattaaatc acgctgagag agcatatcat ctagatccat agagccgagc acggtacgca
     3961 tatttgtcat ggttaaatta acaattgctt gctctaaatg attcacttca taggcagctc
     4021 ggcgagcatc aactgtttga acaaaacata cagcatcaat cgcaacactt gcattatcac
     4081 gtgaaataac ctcttgcgat ggaatatcta aaacttgctc catcatattc atttttcgcc
     4141 caatacgatc aataaaaggt acgacaatgt tcaaccccgg gcttagcgtt ttagtataac
     4201 gaccaaaacg ttctactgtc caatgatagc cctgtggcac aattttaata gtcgaactta
     4261 atgcaactaa aacaagcaca acaaatgcaa tactaacaat cggtaaatca aaattcatcg
     4321 tttgctcctt aaactaatgt gttgaagaat aactaacgtc tactgataat tgccaattaa
     4381 ttggggatat tccttgagaa atcaagtagt tattggcttt agaaaaatgt ttacaaccaa
     4441 aaaatccacg atatgcggaa agtggtgatg ggtgcggaga agctaacaca caatggcgat
     4501 tacgatcgat aaattgcccc tttctctgag cgtggcttcc ccaaagtaga aagactaaat
     4561 tatcacggtg ttgatttaat tgtgcgatca ctttatcggt aaaaatttcc caaccaattt
     4621 gtgaatgcga accggctcta ccttgctcaa ccgttaagct ggtgtttaac ataaataccc
     4681 cttgttttgc ccagtcaatt aaatagccat gcggtggaat ttgaaatcct tcaatatctt
     4741 cagataattc tttatacata ttgaccagag aaggtggcgg ggcaaccggc ggtttaactg
     4801 aaaaggctaa tccgtgggct tgatttgggc cgtgataagg atcttgccct aaaattacta
     4861 ctttcacgtc actaaattcg gttaaggcaa aagcactaaa cacctcgttt tgcggaggat
     4921 agatgacttt gccggctaat cgttcgttat gtacatattg taaaatttgt tgaaaatacg
     4981 ctttttgttt ttcttcgcct aaagcttctg tccaagtttt cataaaacca ccaagtgtat
     5041 attttttacc caaccaactc aatcatgtct aaaaatggtt aaatttttat cgctttttat
     5101 ctaaaaaggg gtacaataac ttcaaataaa tttgaa
//
LOCUS       DANMGB010000163         5036 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.163, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000163 DANMGB010000000
VERSION     DANMGB010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.163"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..633)
                     /locus_tag="PXG19_002154"
     CDS             complement(<1..633)
                     /locus_tag="PXG19_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL6067417.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXG19_002155"
     CDS             complement(760..1353)
                     /locus_tag="PXG19_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6067418.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..2410)
                     /locus_tag="PXG19_002156"
     CDS             complement(1364..2410)
                     /locus_tag="PXG19_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL6067419.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSEKNPTDNNTNYKNNNDHTTPLNPPAGEPAP
                     AEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNITARIRESSVADCCQVVDYLVAK
                     WGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNGKPVCVNGKWVTPAELEKRLIMP
                     TVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATINTRNKRPLERDLPMIISQEIKN
                     AVERIDRLRVPTFS"
     gene            complement(2407..3090)
                     /locus_tag="PXG19_002157"
     CDS             complement(2407..3090)
                     /locus_tag="PXG19_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL6067420.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(3148..3336)
                     /locus_tag="PXG19_002158"
     CDS             complement(3148..3336)
                     /locus_tag="PXG19_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL6067421.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            3461..4117
                     /locus_tag="PXG19_002159"
     CDS             3461..4117
                     /locus_tag="PXG19_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067422.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            4129..4503
                     /locus_tag="PXG19_002160"
     CDS             4129..4503
                     /locus_tag="PXG19_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067423.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            4655..>5036
                     /locus_tag="PXG19_002161"
     CDS             4655..>5036
                     /locus_tag="PXG19_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6067424.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFN"
BASE COUNT         1458 a         1032 c          972 g         1574 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg ggggattaag gggggtagta tgatcattat
     1981 tatttttata attagtatta ttatctgtcg gatttttttc cgagctttct cggaaatttt
     2041 tccgagtttg ttcggagtta tttccgatac tcggattttt ttccgactca cggatcggct
     2101 cgaatttatt ccattcacaa cctttttcgg ttaaacggac ataatcttta ccgtccattt
     2161 tgaagtggtc gataatgcct ttttctttca acaccttata ttggcggtaa actgtatctt
     2221 ctttgctaaa aaccgcaggt aactcttcgc aaaccttgct aaatgacatc cagtaatagg
     2281 ttatgccgtc aataaccacc gctttcgccc aactggaggc ttgattgatt aaatcgacca
     2341 atgccccttg tgtaatattg atttcccatt ccactaagcg gacattgttt atggttgatg
     2401 taaatctcat tgtcctaact ccgatgcgta acgttgagca atccattcaa tccctttggc
     2461 ggttactctc gtttgggtaa aattatgacc gtgttctgcc gtgccggttt ttactgcaaa
     2521 aagctgttta gcttgtttat cttgataagg gagtaggttt cctgattggc gataaagaac
     2581 tcgatatcgt tctaaacatt caatcaaccg cttttctgga aaattgagta tcttggcggt
     2641 ttctcgcaat gatttagtcg ttcccacctc aacataatgc tccacaaatg cgactttcgg
     2701 ggcttgaatg gctaattgat gattctgctg ctcaatcact tcttgctgtt ctgccgccaa
     2761 ccgtagagct tgagagaaag attgtggaat accttgtctg ctttctagct cttgccaacg
     2821 gtcgataatt ttcttgcgaa gtatcacgct atagccggaa attagggtaa gggttaaatc
     2881 gtaaggcaat cgaaattccc ggtatgtttg cccattttga gggtgtgtcc aaaaatgggc
     2941 atacccctcg gcaggaatat ctaattgact aaacatcgct tctatatcac gagtaacgtg
     3001 tcgatgttct ttttcgcaca actcagcaat ctcacgacta ctcatcgtaa tgcttgcttt
     3061 tggtgccgaa atgtttaata attgattcat cgaaaatacc tttcgtgttt aattatgtat
     3121 gaaagccacc gttacagcgg tggtttttta tttgcttcta tttctataaa gtgagtgttt
     3181 gacctttaac ttgccggcag tgatctcttg taatctgtac gcatttttct caggaataat
     3241 ctcgccccat tgagaaacag cagatacact aatccctaaa gttgccgcca ctttttctag
     3301 agttccgaaa tgttcgagca catcatcttt tttcatattt tcttaattcc tttcttgaat
     3361 tttatttaag acctcttaaa tatacaatta aaggaaactt aagtcaataa atgttaagat
     3421 aacttaacag caactttatt tttaccttta aggggatact atgaatactc agaccttggg
     3481 cgatagaatt aaaagccgta gaaaagaatt aaaattgaca cagaaagatc ttgctactgc
     3541 gttaaaaggg gtctcacacg ttgcagtatc tcaatgggaa agtagtacga ctaagccaaa
     3601 ttcagagaat attttggatt tatctacagt attgcaatgc gatattagtt ggctcttgcg
     3661 tggtaatgga gagtctaatg ttctacctgc tagcctcggt atgactaaag tcccattaat
     3721 tagctatatt caagccggac aatggacggg aattgacgat tttcgtgaaa cctgtgggga
     3781 ttatgaatat atcctaactg atcttgaggt gtctgaagat gcttttgccc tagaaatcaa
     3841 aggggactcg atggagcctg attttattga aggagaccga gtaattattg atcctgatgt
     3901 acaacctcac gccggtgagt ttgtggcagc aattaatggc gattatgaag ccactttcaa
     3961 aaaataccgt ccgttagaag acttagacga atacggaaga caacattttg agcttatcgc
     4021 tcttaatccg gattaccata aattatcaac gctaaagcaa gaaatcagaa ttatcggcac
     4081 aatggtagag catcgtattt atcgtagaaa gagataggaa ttgataatat gacagaattt
     4141 aaagatgtaa aacaggcgat tgtagaagct caattagctt cgacacctaa agataaagtc
     4201 gttaatgaca taatgaaagg aagtgcggaa ctgctttcag caaatgatat tatcaatagg
     4261 ttaggtattg gggcagatga gtttcaagag ttggttaatt tacctaacca ttatttgcgt
     4321 ataaatggag ggttaggtgc tgctgtgtat aatacaagaa gaatgtttga tacccatgtt
     4381 gagttagtca atcaagagtt agaaaagaat atttcatttc ctaaacctga tttatatatt
     4441 ttggggaaag ctcgttggaa aaaagaaaca tttaagaaat ggttggaaga acagtgtaga
     4501 taaagaaaag gtaggttaaa aaacctacct tttctgaacc gcaaataagc gattctcaca
     4561 ctttacaaag caatccagct cctacgtctg gggcttcggg tccgttgcca gtgcaagtat
     4621 tattacatta aactaaactt gagtaaagga aaatatgttg tccaaacaag tgctaagtat
     4681 ttcagaaagt cggctgagta catatttatt ttgctttttc cgaaatgatc ccacaaaaca
     4741 gaaagaagct attgcaattt ataccgcctt gcaacatcga acaggaattt atttttcatt
     4801 gattcaagaa atagaggtgg cactaagaaa tgaagtcagc cagttgttac gctttgctgc
     4861 acctaatcat aatttatacg aattctttca ttttctagcg aacgatagta atgctcctct
     4921 taatgcagaa tctaaacgcc agctacaaaa agccattagt gaatgcggac gtaactataa
     4981 tgaaaatgac ataatttctc atatttcttt tggattttgg gtaaatctgt ttaatt
//
LOCUS       DANMGB010000164         4999 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.165, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000164 DANMGB010000000
VERSION     DANMGB010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4999
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.165"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(55..765)
                     /locus_tag="PXG19_002162"
     CDS             complement(55..765)
                     /locus_tag="PXG19_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL6067425.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
     gene            complement(734..880)
                     /locus_tag="PXG19_002163"
     CDS             complement(734..880)
                     /locus_tag="PXG19_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067426.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            complement(998..2215)
                     /gene="fabB"
                     /locus_tag="PXG19_002164"
     CDS             complement(998..2215)
                     /gene="fabB"
                     /locus_tag="PXG19_002164"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL6067427.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            2476..>4999
                     /locus_tag="PXG19_002165"
     CDS             2476..>4999
                     /locus_tag="PXG19_002165"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL6067428.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYLA"
BASE COUNT         1623 a         1012 c          821 g         1543 t
ORIGIN      
        1 tgaccgcttg caggcaataa aaaagtgcgt ttccgcactt tttactaaaa tgatttaatt
       61 actcaaccaa tgctcaccgt tgccattagc tggtggatta atcggttggt tattattctt
      121 acctggaata ataatttgag gctgatcgta catacatttg ttgttcgaca atatatcaca
      181 gggaatagca catacggcag gggcagaaag aagacaactt gaaccacctt tttgattaca
      241 attctctaat gcattttctt cagcaagact actaacgata ccatacccaa aatcctcgaa
      301 gccttgacca tctttataac cttgtgcaaa agcaaggcac atattactaa acgataagat
      361 catttggcaa ttacgaccac cgttcttttc acactgttta aacgcatctt gcttcgcatt
      421 ttctaaattt ttagacgtat tatcagtcac ccacatcata ttttgttcag gtgacatata
      481 aattgatgac cataaacgag gctgtgtttt acgctttgct aagtcctctt tactggcaat
      541 ggttaccgct tctttatatt caccacattt aaactctttt tcgacatcac caaaaccatt
      601 catttcacga acagaagtga ttttattatc agcgtcagca aaaagatatg tccaagtcga
      661 tccacctgta taaaccttat ctgttgtcat aaatatagtg gttgcattac gaccaacttc
      721 ataagtttgc aaattataca aagctagttg aataaccata aacatagctt aattcattat
      781 cttttacgca ttgaaccgct gtatcaggta aacgtttacg tgcaaaaaat tcagatacat
      841 ctttaccacg ccaataaaca ctatctagtg gcttaatcat tgtagaacaa gcggtcaaaa
      901 ataatgacaa aataacaaat agcaaagaac ttattttgaa atttataata attacctcaa
      961 aagaaaaaag agcaagcttt cacttgctct ttttatgtta cttagaatag cgttggaaca
     1021 ctaaacacgc attagtacca ccaaagccga agctgtttga catcacggtt gttaatgctt
     1081 tgtcttggcg ttcagtcaca atattcatac cttgtgcttg ttcatcaagg gtttcaatat
     1141 taatgcttgg tgcaataaaa ttattatcta acattaataa tgaataaatt gcctcgtgcg
     1201 cacctgctgc acctaatgag tgtccggtca ttgatttggt tgatgaaatt gctggcgttt
     1261 tatcaccaaa gacattacgg atcgccccta actcttttac atcacccact ggagtagaag
     1321 tgccgtgtac gttaatatac tcgatttcac catttacagt tgccatcgcc tgtctcatac
     1381 aacgctcagc accttcacca cttggcgcga ccatatcgta accgtctgag gttgccccat
     1441 agcccacaat ttcagcatag attttggcac cacgagcaag agcgtgttct aactcttcca
     1501 ccacaaccac tgcaccacca ccggcaatca caaaaccgtc acgattagca tcataagcac
     1561 ggctagcttt tgttggtgtt tcattatatt tagttgaaac agcacccatt gcatcaaact
     1621 cggttgcaca ttcccaagaa agttcttctg caccacctgc aaacaccaca tcttgtttac
     1681 ctaattggat taactccatc gcgtgtccaa tacagtgtgc tgaagtcgca caagctgagc
     1741 tgattgaata gtttacacca cgaattttat aaggtgttgc caagcatgct gacacacttg
     1801 atgccattgt tttggttact gcgtaaggcc caacggcttt cacaccacgt gggccacgta
     1861 ctgcatcaca agctacaagt tgactgtgcg ccgagcctgt accagctccg atcaccaaac
     1921 cggtacgatc gtttgaaact tgttcttcgg ttaagcctga gtcttcgatt gcttctttca
     1981 ttgaaagata agcgtaagcc gcagcatctc ccataaaacg atagatttta cggtcaatta
     2041 actcagccgg atttaattta atcgtacctg ccacttggct acgcataccc acttcagcaa
     2101 actcaggcac aaattcaatg cctgatttac ctgcttttag tgattccaac acttcttctt
     2161 tgttgttacc gatactggaa attacaccta atcctgtaat aacgactctt ttcattttgt
     2221 ttccttcatc attttgatct gaaaaatact tgattcagct tacacttgtt cactcaaata
     2281 agctactaaa acttgattat tttacacaat ttcattactg gtctgaactc tttctatcaa
     2341 gatagcggtt gaatttcaga cattttttgc aaaataggga atgaaattta atttcccgat
     2401 tttttaccct attacataat aatcactttt ccgctaaaat gctaaacagt tcacacttta
     2461 gtaaggaaag ctgacgtgaa aacattaacc ctgacagcca acaaaataac agccgtagaa
     2521 ggcgctgcca ttggggcgaa ccaggggagc ttcgcccaaa aattaaactc tactaaagca
     2581 cgaattgatc aacttaatgc ataccgaata gaacgagcta tcaatgctaa taatcatcat
     2641 tttatgcatg ttttctctct cattccattg cttattcatc ttaatcaccc tgtgttaccg
     2701 gcttatgttg aaaatgcacc acaagggatt tggcattttc aactctctga ttatcaaaaa
     2761 caatttctgg tttcttaccg ttttgatgaa gcaatctctg ccgatcattt gggcccccat
     2821 cccagctttg atgctcttta ttcgatgggt agcaccggta ctattaccca aacaagctgt
     2881 tctgatttag atttatggct atgctatccg aaccatttta caattgaaca atataagtta
     2941 atggagctca aaattaataa attgcaagaa tgggcaaaga cattccaaat cgacatcaat
     3001 atttatttaa tgaacccaga acaatttaag agccaaactt ataacagtag cgtaaccgat
     3061 gaacacagtg gttcagcaca gcattttttt ctattagatg aattttatcg ttcagctatt
     3121 ttacttgccg gtaagcgttt actctggttg catttacata aaaatgaata ccaaaatgtt
     3181 cacaataacc ctgaaattga cttaacggaa tggattgatt tcggcgattt ttccagcctt
     3241 tcaaccagtg aattttttgg tgcaagctta tggcagctct acaaaggaat taataaccct
     3301 tataaatcgg caattaaaat tttattgctc gaatgctacg ctcacactta tcctaaaaca
     3361 aagctcatct ccaaagaatt taagaaaaaa ctactaagtg acaatgcttt ggaatatcac
     3421 tttgatccct acttagccat gcttgaattg gtaacagaac acttaagatc acgcaaagag
     3481 tgggtgaaat tagaccgctt gcgagtctgt ttttatgcaa aagcggttga gggagaaata
     3541 aataacaact ggagaagtcg tgatttagac gagctggtta accaatggtc ttggtcagaa
     3601 aaacaaattc aattacttca aaaccgtcaa cattggaaaa ttaagcaagt gatgaatcat
     3661 gagaatatgc tgattgatca tttactacaa agttatcgaa atttaattca ttttgctcga
     3721 aaatttcata ttaatccgag cattatgaca aatgatactg atattttaat gcgaaaactt
     3781 tattctgtat ttgaagcact tccaggaaaa atatctttaa ttaatcataa aatatcgtcc
     3841 aatttagcag aaaaagcaat tacatttatt gaagctaaag ttggatctgc gttacaaccc
     3901 ggttggtatt tagttaatca ggcacctaaa agtcgttatg actctgaaaa tcgttatgtc
     3961 cattataata aaagcccgat taagcttatt gcttgggggt attttaacgg cattattaac
     4021 gcagcaacta atttacatac tgttagccct aatttagata tcgagaaatt gcgacaattt
     4081 atcaccgact tgcgcttatc tttcccaatt caagcgccgg aagtgaccaa tgatgacatg
     4141 catcacccta atgaaattcg caatttggtt atagcgctta atttagtaca agatccaacc
     4201 gaacatatcg atgaactacc aaaaaaagtt tatccaagcg atctgtttaa ttttggtaag
     4261 gcacaaaaaa cgttagttgg tagtgtgagc attatttatc gaaatgtatg gaatgaaatt
     4321 cgaactcaac attttgacgg tgaagatgct attttaaaag cactaaaatt ggtatccaat
     4381 cgaatttatc aaggaaattc ttcacctcaa tcagttaatg ttttttgcta tagtaaatat
     4441 ctacgtagtg agttacgtga ttttgtggca gatttagttc ataaatgtat tacaattcag
     4501 actggttgtt tactgcaaga gaatgaattt agcactttaa aagtagcagg aaaaacctgg
     4561 cagtttcttt ttcataaaaa aacatttagc attaaacaaa ttgatgaaca acaagcggtt
     4621 gaaaatttaa attcttttgc aaaaaccaag caaaatgcta aaagcgaaaa tgaaaagaaa
     4681 aaagaatttc cgcagcaaat tagtgaattt gccagtgaag gctttttaca gtttttcttt
     4741 gaagacaatg tcgataatag ttttaatgta tatgttgtag atgaacgtaa taatgtcgaa
     4801 agttactata actgtttcgg caataaagaa gagaaaatca ggaaaatcaa taaattacaa
     4861 aatgaaaaac aattaaaaac agaaacacca gcatcatttg gaagctttaa tcatccacaa
     4921 ttttatcaac ttatttcacc aaacggtgag ttatgtattg tgccgtttca aagccgccag
     4981 catttagatt atttagcac
//
LOCUS       DANMGB010000165         4992 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.166, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000165 DANMGB010000000
VERSION     DANMGB010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4992
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.166"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..583
                     /locus_tag="PXG19_002166"
     CDS             <1..583
                     /locus_tag="PXG19_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL6067429.1"
                     /translation="YTTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGK
                     KDFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGV
                     RMAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVI
                     IAVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            667..1437
                     /locus_tag="PXG19_002167"
     CDS             667..1437
                     /locus_tag="PXG19_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL6067430.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXG19_002168"
     CDS             complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXG19_002168"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6067431.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2675..4945)
                     /gene="nrdA"
                     /locus_tag="PXG19_002169"
     CDS             complement(2675..4945)
                     /gene="nrdA"
                     /locus_tag="PXG19_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6067432.1"
                     /translation="MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELR
                     SHIQFYEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL
                     YEHVKKLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNR
                     VSGEIYESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTP
                     TRQFSSCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMD
                     YGVQINKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRK
                     VKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLA
                     HFYDEQGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSL
                     NRRALGVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACA
                     YFDQTTYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSET
                     SSQISNATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLV
                     GIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAED
                     VQDDLDEGCAGGACKI"
BASE COUNT         1547 a         1049 c          918 g         1478 t
ORIGIN      
        1 ttataccact attatgcaac gcatttcagg tgcaaaacag atagattcac tcacggttaa
       61 aattaaagat gatattgaaa gccaaactgc cgaaaaaagc attgccgaat tgttagtagc
      121 taaacacggc aaaaaagatt tctttattat gaatagtgat acgatcaaac aaaccattac
      181 cagtaccacc aatacaatga ctttgctgat ctcctctatc gcccttattt cgctgattgt
      241 cggtggtatc ggggtaatga atattatgct cgtttccgtc accgaacgca cccgagaaat
      301 tggtgtccga atggcgattg gcgcaaaaca acgcaatatt ttgcaacaat ttttaattga
      361 ggcggtggtt atttgcctaa taggtggtgt gattggcatt ttactggcaa gcgctattat
      421 ttgggcattt aataccttag gtacgaattt taaaatgatg ctttcaccgg aatcggtgat
      481 tattgccgtg ctctgctcta cacttatcgg tgtggtattt ggctacattc cggcaagaaa
      541 cgccgcccaa ttaaacccaa ttactgctct ggcacaagag taaatgcgat aactatctgc
      601 tacactgtag gggcaaaaaa ttttttgccc ctacatccat tattatgcca agtttaagga
      661 gataaaatga caataaccaa tactgaacta gaacaaattc tgaacaccaa actcaacagc
      721 tccgccatta acgactatgc cccaaatggc ttgcaagttg aagggaaaag agagatcaaa
      781 aaaattatta ccggtgtgac agctacactt cccctgattg aaaaagcgat tgagaaaaac
      841 gccgatgcaa ttttagtcca ccacggttat ttttggaaaa gtgaaaaccc gtgcattcga
      901 ggaatgaaag gtaaacgcat taaacagctt ttagtgaatg acatcaatct ctttggttat
      961 cacctaccac tggatattca ctccgaacta ggtaacaacg cccagcttgc taagcattta
     1021 ggagtaaaaa atctacaagg tttagaagac agacctaatt caattccaat gtacggtgaa
     1081 ttagaaaatc cgatttccgc caatgaactg aaacaaaaac ttgaaaaaac gttacaacgc
     1141 accgttattt tatgtgatga atttgttcat agcccacaaa aaatgattaa aacaataggg
     1201 atttgctccg gcggaggaca aggctatatt gatttagcct ttgaaaaagg ctgtgatgcc
     1261 tttattagtg gcgaaatttc cgaacagacc actcactctg cccgtgaaca aggaatctat
     1321 tattttgctt gcggtcatca cgccacggaa cgagatggcg taaaagcctt aggtgaatgg
     1381 ttagccgttg aatatggttt agatgttgaa tttattgata ttgataaccc tgcataaaaa
     1441 atacaagcgg ttgaatttcc tgaaaatttt gcaatttgca aaaaatcact aaaaatcaac
     1501 cgcttgtata tcatagtcta aagttcaaaa tcgccaaaat cacggctatc tactttagca
     1561 tcaatctggc caaccaaata agaactgact tccacttctt gtggtgctac ctgtacatta
     1621 tcggaaacca accacgcatt gatccacgga atggggttgg aacgtgcctt aaatggtaat
     1681 ggtagtccaa cagcctgcat ccgaatatta gtgatatatt caatatattg caccaaaata
     1741 tcccgattta gccctatcat cgaaccgtct ttaaacaggt attccgccca cgctttttct
     1801 tgttcagctg cacttaaaaa aagctcgtag gcctcttggc gacattcacg tgcaatttct
     1861 gccatttcag gatcatcatt gccataggcc ataatattca atatatgctg agtgccggta
     1921 agatgtaatg cttcatcacg tgcaataaat ttgatgattt tggcatttcc ttccataagc
     1981 tgccgttccg caaaggcaaa tgagcaagca aaagagacat aaaaacgaat tgcttcaagc
     2041 gcattcacac tcatcataca gagataaagt tgtcttttta gactacgcaa actgacctca
     2101 caggtttttc catcaacctg ataactgcct tcaccataca aactatagag ttggctgtca
     2161 cgaatcaaat catcataata ggcggaaata tctttggcac gcttaataat ttcttcgttt
     2221 gtgacaatat catcaaatac tattgatgga tcattgacaa tattacggat gatatgtgtg
     2281 taagaacgac tgtgaattgt ttcgctaaat gtccaagttt caatccaggt ttcaagctcg
     2341 gggatagaca ctaatggcaa aagcgccaca ttcgggctac gcccttgaat ggaatccaac
     2401 aaggtttggt attttaaatt gctgataaaa atgtgctttt catgttcagg cagttgggca
     2461 tagtcaatgc ggtcttgtga cacatccact tcttccggtc gccagaaaaa tgagagttgt
     2521 ttttcaatca gtttttcaaa aatttcgtat ttttgttgat cataacgcgc cacattcaca
     2581 ttttgtccaa aaaacatggg ttcttttagt tgatcatttt tatgttgtga aaacgtagta
     2641 tatgccatgt tattctcctt tatttctgtt cttattaaat tttacaagca ccaccagcac
     2701 agccttcatc taagtcgtct tgcacatctt ctgctccatc acgggtattt tgatagtaaa
     2761 gggtttttaa cccgtattta tacgccgtta atagatcttt taataatact ttcatcggta
     2821 ctttagcttc tgcaaagcgg tttgggtcgt aatttgtatt cgccgaaatc gcttggtcaa
     2881 caaatttctg cataatccca accaaatgca aatatccgtc catattagga atatcccaaa
     2941 gcagttcata gtatgctttt aaacgttcat actccggcac aacctgcttt aaaataccgt
     3001 cttttgatgc tttaacacta atatagccac gcggaggttc aattccattg gtggcattcg
     3061 aaatttgcga cgaagtctcc gatggcatta aggcagttaa agtggaattg cgcaagccaa
     3121 attgcagaat atcctgacgt agttgttccc aatcataatg aagcggttct tgagttaatt
     3181 catcaatttc ttttttataa gtatcgatag ggagtaaccc tttggcataa gtggtttgat
     3241 caaaataagc acacgcccct tgttctttgg ctaaattcat cgatgctttt aataaataat
     3301 actgaatcgc ttcaaaggta cggtgagtta aattattagc actgccatcg gaataacgca
     3361 cttggttttt agctaaatag taagcatagt taatcacgcc tacacctaat gcgcgacgat
     3421 ttaatgagct gttacgtgca gctaataccg gataatcttg ataatctaat agggcatcta
     3481 gcgcacgaac cactaaatca gccaattctt ctaactcatc taaattgctg agtgtgccta
     3541 aattaaatgc cgataatgta cataatgcga tttccccttg ttcatcataa aaatgtgcca
     3601 gtggcttagt tggcaaagca atttctaagc agaggttcga ttggcgtatc ggtgcgacac
     3661 gaggattaaa tgggctatga gtattacaat gatcgacatt ctgaatataa attcgccctg
     3721 ttgaagcccg ctcttgcatc agtaatgaaa acaattctac agctttaact ttacgttgcc
     3781 gaatgctcgg atcttgctca tattgcaaat aaagttgctc aaatttagct tgatcagcaa
     3841 aaaacgcttc atataacccc ggcacatctg atggactaaa taaactaatc tcaccgcctt
     3901 taattaaacg ttgatacatc attttattaa tctgtacccc gtaatccata tggcgagcac
     3961 ggttttcttc cacaccacgg ttatttttta ataccattaa gctttctgct tccaaatgcc
     4021 aaatcggaaa atacacggta gccgctccac cgcgaacacc accttgagag caagacttta
     4081 ctgcagtttg aaaatgttta taaaagggaa tacagccggt atgaaatgct tctccaccac
     4141 gaatggggct acctaatgcc cgaattgcgc cggcattaat accgatccca gcacgctgtg
     4201 aaacatattt aacgattgca gccgaggttg cattgatgga atctaagcta tcatcacact
     4261 caattaacac acaggaacta aattgacgag taggtgtacg cactcctgcc ataatcggtg
     4321 ttggcaaaga aattttgaaa gtggaagtcg catcataaaa acggcgaata taatctaagc
     4381 ggcttgctgt tggatactta gaaaataaac aggcagctac gagtaaatac aaaaattgag
     4441 ccgattcata aatctctccg ctaacacgat tctgcactaa atattttcct tccaactgct
     4501 ttactgctgc ataggaaaac gtcatatccc gccagtgatc aataaatcca ttcattgtct
     4561 cccattcttc gggcgtatag tcgctcagca agtctgcatc atatttacct agcgcaacta
     4621 attttttaac gtgctcatat aaatgcggtg gctcaaattg tccataagct tttttgcgta
     4681 agtggaaaat cgccaagcgt gcggctaaat attgataatc tggcgtatcc ttagtgatta
     4741 gatcagctgc agccttgata atagtttcat gaatatctga agtgcgaata ccttcataaa
     4801 attgaatgtg agaacggagt tctacttgtg aaacagaaac attctctaac ccttctgccg
     4861 cccaagtaat cacacgatga attttatcta gattgagttg ctcgcgcgtg ccattacgct
     4921 ttgttaccat taaactttta ttcataatta ttaacccttt ataaaatacc ttagtaaaac
     4981 actacatctt gt
//
LOCUS       DANMGB010000166         4932 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.167, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000166 DANMGB010000000
VERSION     DANMGB010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4932
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.167"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(29..2218)
                     /gene="yccS"
                     /locus_tag="PXG19_002170"
     CDS             complement(29..2218)
                     /gene="yccS"
                     /locus_tag="PXG19_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL6067433.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2262..2720)
                     /locus_tag="PXG19_002171"
     CDS             complement(2262..2720)
                     /locus_tag="PXG19_002171"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL6067434.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            2846..4120
                     /gene="thrC"
                     /locus_tag="PXG19_002172"
     CDS             2846..4120
                     /gene="thrC"
                     /locus_tag="PXG19_002172"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL6067435.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4199..4918)
                     /locus_tag="PXG19_002173"
     CDS             complement(4199..4918)
                     /locus_tag="PXG19_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL6067436.1"
                     /translation="MTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLPGAFTP
                     TCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPDGNGEF
                     TEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTMIKYLS
                     PNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITGKTSVP
                     QVFIGGKYIGGSDELAAYFAK"
BASE COUNT         1448 a         1129 c          996 g         1359 t
ORIGIN      
        1 cacattttat gatttaatta taggctcact accttacact cttgagctgt aatatactat
       61 ttaactgcgg taataactgc acgatcagtc tgagttgttg tatcaacact aaggcgaggt
      121 cattttgctt ttgctgattt tcttgctcaa attgggtgag gtcttggtcg atagcggtca
      181 atttttccga taattttgca aatgaacggc tctctgaggc aatttgcccg atgatgtttg
      241 ccacctctct ggcgtgtgag aagaacattg cggaaaaatc cacttgttga ttaatctctc
      301 ggctagcaat acggtaagcc cctaaggtgg aaatataacc cagcaaggtg taagcaatac
      361 ctaacaattt tggggcgaag gttaaatcgt tcgcatattt ttgtggttcg ctgtacatat
      421 tggtaatcgc attactcagt gccgataaat ggttatgcac atcacggcgg gcaatacggt
      481 aaggcagttg ctcgttataa ccaaactgca actgggcgat aatatggcgt aaatattgcc
      541 cactggcttt caagccgtta tgtaagttac gttgtaaatt taaatacttc caatccggcc
      601 ataagaatgc cactgccagc cacgcaatcg ctgtacctag taaggtatca agcattcgca
      661 ttaagatgcc gctttcaagg ctcacgcctg caatatcaag gcttatcatt accaacacag
      721 tgatataaaa ggttgaaaag ccataatgta ccaagcggaa aaaggtataa agcgaaccgg
      781 tcagtacgat tagcccaagc tgggcttcga ggctgagcgc cacgttaaac agttcaaaag
      841 agccaccaac cagcacgccg aaaattgtgc cgatcacacg ctgaatcagt cgggtcttag
      901 tagcagtgta attcggttgg cagacaaaaa tggctgtgag taaaatccag tagcctttgc
      961 tatcaaagcc taaaatcggc acaatcgcac tgcacaacag caccactatc gacaaccgaa
     1021 cggcgtgtcg aaacagttgg gattcaaagg ttaaatgggc tttaattgct tggctgatat
     1081 tgcttaagcc ggtaatattt tcggcgatca agcggtgaga ttttgtgaaa tttttactta
     1141 acggttcaat atgctcacca ctgcttgagc cttgttcaat ctgggctagt tgccgctcaa
     1201 tattgcctaa attttctgca atagcacgcc agcgataagc acttttcaag ccccgttctt
     1261 gatgataatt caatgaatta agcaagccct gcaaggcttt ttcgccacga acgccgtgtt
     1321 catatacttc tctatggcgt aacgacattg caattttttg acacgccgca gcctgtaatt
     1381 ccagcacccg ttgaaagcgg aacattaaat cactgttact taattgttgg aacagttcgt
     1441 gatattgata atggctggaa cttgcccgct ctaaaatatc ttgagcggtg aaatagtaac
     1501 gcaacattcg ctgtgtccgt tgctgcttgt gctggcggct taggcggtag aatagggcaa
     1561 ctctggtttt atcaaaggca gccatcacct cactattggc tttcgccaag gctagttgtt
     1621 tggcagctaa atcgtcatca tcagggtcaa aataggcaga tttcgccagt aaataatggc
     1681 tcaacgcaag gtaggcggac gctaaattct cctgcacggt tcgattcggg aaaatcaggt
     1741 acaccaaaat accgaccaaa ccatagagta aggtgccaag taagatcatc accacattgt
     1801 gataccacaa tacttcgggc gtataagcca ggctgttata aaccgccaca atcagcgtgc
     1861 caaaagcaat ggtactatag cgttgcccga ttgcccctaa cattaccagc aaaaaggtgc
     1921 aaaccaccgc caccggcaca aacagccagc ccaaatggag cgacacactc gccccaatcg
     1981 aggaaagcga gaacgccact aggctgataa tcagattttt cgctcgtccg attaggctgt
     2041 tgtctaaatc caccaaaccg ccggcgataa tgcctaacat caacggcatc gcaaaatcag
     2101 aaataccgag ctgccaaatg ctgaccgccg caatgtttag cgaaataaac atcggcaggg
     2161 ttttaattac attttccgaa agccaactgt gttgtagata tcttaaaaat ttattcatat
     2221 ttgctcattt cgggcaggca caggacctgc ccctacctac actaccccaa acgttctgcc
     2281 aaatagccat cataatccgg cacattcacg ctgattgctt gattgaacaa atccgcattt
     2341 aacagaaaat tagcggtggt ttcgttaatc gccaccggaa tattccaaac ggtcgcaatc
     2401 cgcatcaggg ctttcacatc aggatcgtgc ggagcggcat tcatcggatc ccaaaagaac
     2461 accagcagat caattttctt ttctgcgatc agcccgccta attgctgatc gccccccatc
     2521 gggccgctta acaatgaagt aatttcaagc cctgtttctc tggcgagcaa atgcccggta
     2581 gtgccggtgg catatagctt atgcgaggca agttgggctt gatgagtttg tgtccaacga
     2641 attaaatctt gtttacagct atcgtgagcc actaaggcaa tctgtttttg ttttgcgatg
     2701 gttctgacgg tggttttcat ttttagctcc tttgcaaaat ttttcacaaa tcataccgct
     2761 tatttttcgc ttttgcattg actaatcacg gcttatggct aaaatcaggt aaaaattcgc
     2821 attttaaaac aaaggattaa ccgcaatgaa cttatacaac atcaaacacc ctgaagaaca
     2881 agtcaatttc gcccaagcgg tacgccaagg cttaggcaaa aatcaagggc tatttttccc
     2941 tgaagtgtta cctaaattag atagcattga tgaattattg gatttacctt tggttaaacg
     3001 cagccaaaaa attctttcag ccttaatcgg cgaagagtta ccgcaagaaa ccttaaatgc
     3061 aatggtaaaa aatgcgttca ctttcccggc accgcttgcc aaagtcaatg atgatattta
     3121 tgcgttagaa ttatttcacg gtccgacttt agccttcaaa gattttggtg ggcgctttat
     3181 ggctcaagcc ttagccaatg tacgaggaga cggcaaaatt actattttaa ccgctacctc
     3241 aggtgacacc ggtgcggcgg tggctcatgc tttctatggt ttggaaaata tcaacgtggt
     3301 cattctttac ccgaaaggca aaatcagccc attacaagaa aaattattct gtaccttagg
     3361 cggtaatatt cgcactgttg cgattgaatc cgactttgat gcttgccaag ccttagtgaa
     3421 acaagccttt gatgatgccg agctacgcca agcgattggt ttaaattccg caaattccat
     3481 caacattagc cgtttactgg ctcaaatttg ctactacttt gaagcagttg ctcagttacc
     3541 aaaagaaaaa cgagataacg tagtggtttc agtaccaagc ggtaatttcg gtaacttaac
     3601 cgccggctta attgccaaaa cattaggttt accgattaaa cgttttattg cctcaaccaa
     3661 tgccaatgac accgtgccac gctatttaca atcaggcaaa tgggaaccaa acgcaaccgt
     3721 tgcaaccctt tctaatgcaa tggacgtaag ccgcccgaac aactggccac gagttgaaga
     3781 attatttaaa cgcaatggct ggagtttgtc tgaattgggt tctgccgcat taaacgatgc
     3841 cgaaaccgaa gcggctttga aagctcaata tgcagaaggt tatctgtgtg agcctcacgg
     3901 tgctattgct taccaaagct tgaaagatca gctacaacaa ggcgaaaccg gtattttctt
     3961 atgcaccgct cacccggcaa aattcaaaga gtcggtggaa cacattttag cgattgaatt
     4021 gccgttaccg gaagcattag ataagcacaa caaactgcca ctgttatccg atgaaatggc
     4081 agcagatttt gcaacattgc gtgcatattt gttgaaataa atattcaata atagaaaagg
     4141 gattaagtat taaacttaat ccctcttttt atgcattaca agcggttata tttgcctatt
     4201 attttgcaaa ataagcagct aactcatcac taccgccaat atatttaccg ccgataaata
     4261 cttgtggcac agaggtttta cctgtaattg ctcgtacaga aattgtgctt gcatcacgac
     4321 ctaacacaat ctcctcaaaa gtatagcctt gctcttttaa taatgctttt gcttttgcac
     4381 agaacaggca acccggttta gtgataatcg aaacagactc tttagctgtc caatttggac
     4441 ttaaatattt aatcattgta tcggcatctg atactttaaa cggatcgccc ggttcttgtg
     4501 gctcaataaa cattttttcc acaataccgt ttttcaccag catcgaataa cgccaagaac
     4561 gtttaccaaa cccaaggtca tttttatcaa ctaatagccc cataccttct gtgaactcac
     4621 cattaccatc aggaataaca gtaatatttt cagattcttg atctgctttc caagcgttca
     4681 ttacaaaggt atcattaact gacatacaga tgatatcatc tacccctaat gccttaaatt
     4741 cacaagctaa ttcattatag cgaggcaaat gtgttgatga acaagtcggt gtaaatgctc
     4801 cgggtaatga aaacacaacc accgttttgt tattaaataa ctcatcggtt gtgacatcaa
     4861 cccaagcatc gttttgacgt gtacgaaatg ttacactggg tactttctga cccgtcatat
     4921 ctttaaaaga ca
//
LOCUS       DANMGB010000167         4866 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.168, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000167 DANMGB010000000
VERSION     DANMGB010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.168"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            123..350
                     /locus_tag="PXG19_002174"
                     /pseudo
     CDS             123..350
                     /locus_tag="PXG19_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            375..770
                     /locus_tag="PXG19_002175"
     CDS             375..770
                     /locus_tag="PXG19_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067437.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            802..1443
                     /locus_tag="PXG19_002176"
     CDS             802..1443
                     /locus_tag="PXG19_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067438.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1526..1927
                     /locus_tag="PXG19_002177"
     CDS             1526..1927
                     /locus_tag="PXG19_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067439.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            1972..2202
                     /locus_tag="PXG19_002178"
     CDS             1972..2202
                     /locus_tag="PXG19_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL6067440.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            2270..2536
                     /locus_tag="PXG19_002179"
     CDS             2270..2536
                     /locus_tag="PXG19_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6067441.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            2540..2809
                     /locus_tag="PXG19_002180"
     CDS             2540..2809
                     /locus_tag="PXG19_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6067442.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            2884..3147
                     /locus_tag="PXG19_002181"
     CDS             2884..3147
                     /locus_tag="PXG19_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067443.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            3207..3917
                     /locus_tag="PXG19_002182"
     CDS             3207..3917
                     /locus_tag="PXG19_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL6067444.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            3895..4185
                     /locus_tag="PXG19_002183"
                     /pseudo
     CDS             3895..4185
                     /locus_tag="PXG19_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            4175..>4866
                     /locus_tag="PXG19_002184"
     CDS             4175..>4866
                     /locus_tag="PXG19_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6067445.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFS"
BASE COUNT         1659 a          902 c          966 g         1339 t
ORIGIN      
        1 gaacaagttc tacaagcggt tgtcaagtgt tcatttgttc aatgaacagt tcattgtgaa
       61 taacaaaacc gcttgaatta caagcggtct attttgttgc gtaaatttac tgttagcgtt
      121 gagccataac cgactacgac cgctggcccg aagatattga cggcgagggg gacggcttct
      181 cgcttgcctc caaacggacg accactttta tgtcagccgg aatgacttta gtggagagtt
      241 cgcctggtaa agatattgtc gatctcaaac atatcccgaa aagtagccac gaagccccac
      301 cgactaccgg tattttaagc ctctacaatc gaggcgaccg cagacgcttt agcgaaacag
      361 ttgataggta agctatgaaa atccataccc aaatccgaaa agaaatcctt tcattattag
      421 aggcaaaatt aacggacatc gagcattttt ataacgggca accgaatttc attgatattg
      481 acgaacagca acttgccatc tctgtttatc ttgatgagat taaccgtcag gagcttacct
      541 tatgcgatga acagtggaca gctcaactta acatcacgat ttatctaaaa tcagttgatg
      601 aggcagaaga tgaattagat gagtgggccg aaaaaatccg tgaagtggtt gaaacatatt
      661 ctgcgtttga acatttagag ggcatcagcc tttctcaata tcaatacgaa caagatcaaa
      721 atcaaagaac ttggcactca gccacattga tttttgatgt tgaatactaa caagcaaata
      781 atccttatag gagaatctac aatggcaaaa acaacaaaag tccaaggcac aaaatttaga
      841 attggcattg gacgtgaagc ccaaaaggca attacggcta tcactttagc tacagcaacg
      901 cttactattg ccacatcagg ctataaaaaa ggcgatgcaa tcgaaattac cggttgtggt
      961 cagttagacg gcatttatcc tgtattatct gtaacaggcg atcaagtcaa attgtgcgaa
     1021 gaagtaaact ggacgggtaa agatttaccg gctaattaca ccaaagccaa agcagcttta
     1081 gtacaatact cagaccaatt ctgtgcggta aaaaacattg aaaaatctga tgatacgtta
     1141 agtaccgaag atgttacaac ggtctgctcg gaaggtacag aaaccgaacc cggagaaatt
     1201 gaatttggct caattaaact gagctttttt cacaagccaa gtacggaaat gcaaactcgc
     1261 ttacgcaaat tgttttatga caaatccacc tttgcgtaca aattagaatt acctgataac
     1321 cacggcacaa cctatggcga aggtttcatt gaggcgggta acggctttag tggcgaagtt
     1381 aaaggcaaat atgaaggctc ggtatcaatt aaaccaagca aacgtgatta tttgctagtg
     1441 taattacaaa atattgctcc aaatcgaccg cttgtaatat tgcaagcggt cttttttatc
     1501 ctaaatttta caaaaggaat cgacaatgac actccgtgaa aaactcctcg ccaacaaacc
     1561 aaaattacaa tctatcgaaa tcaacggtga gacctactac ctgcgtgaag ccactgttgg
     1621 cgatatgaat aagcagattt ttgaaacccg aagctggctc attcaacaag ctgaacaaga
     1681 aaatgttgaa ttaccggcag aagatgatga aacctttgac gaagctctca accgttttgg
     1741 cgaaaaatac cgccttgctc aatcggttgc ctaccgttta tgtgacgaaa acggtgcatt
     1801 actgtttaac ccacttaaca ttgacgatct caatgcgatt gccgaattag acagtaaagt
     1861 gattatcgac tttaaccaag ccgtgtccgc cccaaaagac tcagcgagcg aagaaagttc
     1921 caaataaccc tttcgctcgc actgggtaaa acccttgaag aaatcgaaca aatgcctgaa
     1981 cgccactttg ccgaatatca gcttttttat caagagcaac cttttgggct ttggcgtgag
     2041 gactatcgtg ctgctcaact tgcccactta accgcaatga tcaaccgtga cccaaaaggc
     2101 aaagcccctg aactctcgga atttatgccg ttttttaatc gggctgatga agtagaagca
     2161 aatgaagatg atggcgttgc ggattatttg gcgaaaaggt aaatctcttg tatttcattg
     2221 taattctgtc tataattggt gtaatacata gaaatacagg agagataaaa tggcgactat
     2281 caatgatgct ttcagtttta gaacaaatac cgaaataaaa aataccgcat ttgatgtaat
     2341 taaaaactat ggaatgacac cctctcaggt gtttaatatg tttttaaccg agattgcaaa
     2401 aacgaaaact attccgttaa gtttgaatta tcaacccaat cttgaaacaa aattggcaat
     2461 gcaagaagca aaatcaggta aaaatgaagt ttatgcctca cttgaagcat ttcataaagc
     2521 aatgttagcg gagtaaataa tgctacaaat ttcgccgaca aacgcatata aaagagactt
     2581 taaaaagatt gcagccgaat tagtcggtag ttcggaatat gtggaagtaa tgtattgcct
     2641 aataaaccaa ttaccattgg cggaaaaata tagagatcac ccactacaag gtgaatggca
     2701 aggctttaga gattgccata ttaagcctga tttagtgttg atttacgctg ttgaagataa
     2761 tctgctccgc cttgttcgtt taggatcgca cgctgaatta tttggataat ttctgtaaaa
     2821 actaaccgct tgcgattttg tgctgtgggc ggtatagttg gaatattaac aaaggaggga
     2881 aaaatgaaaa atgtacttct atttatcgta cactttttct taatcgcaat gctctcaatt
     2941 atcccaatat taattattct tggagcaatc gaaagagatc cttactatac tgcgtggatt
     3001 ttccttagcg tatttttagg cattggagca ttgttatatt ttgcaaccat tgtttctaag
     3061 ttaattaaca agggaaaaac acaaacatta gaagaaaaac gatatgcaga atattggaat
     3121 aatgtaaaag tcaatattcc caaatagtct aactgataaa tgaccaaaag ctcgctttat
     3181 gcgggctttt ttattggaga aaaacaatga gtggcttagg aaaattaacc gttaccttag
     3241 agcttgaaaa tgcaaaattt cagtccgcaa tgacgaaatc tgattatgag gcacaaaaat
     3301 ttgccaagaa ctttatccaa aatatggata gagctagaaa tcacgccaaa gaatttgccg
     3361 atcgctcaac ccaatattta aaaaacattg agcaagcggc aaagaacctc aataaaaatt
     3421 ctgaattttc atttttatcg actattggtg gacattatca atcaatgtct agtggcatat
     3481 tgagtgcggc aaaagcctat actgatattc aaaataaaat gaaattagta agcggtagtt
     3541 cagcagaggc agctaaacga ttaactgatg tgtttgatat tgcgactaaa acaagccaaa
     3601 gtacagaggc tgtttcaggt gtctatcaaa catttgctca aaatgcccaa tctctcggac
     3661 tggctcaaaa agatgtagca gaattaacta aaacggtctc tcaagccgtt gctgcaagcg
     3721 gcgcaagcag ttctgcagca agtaatgccc taacccaatt tggtcaatca cttttaatgg
     3781 gcaaaatgaa agcccaagaa tttaactcgc tcattactca aaccccaacc attattcaag
     3841 caatggcaaa aggtttggga atgacaatgg cagaatttaa agcagcggta taccgggcaa
     3901 aatctttact tggataacat tcaagggcaa ggttttgaga gagtggatac accccaaatc
     3961 ggcgatgtga ttttaataca ggtcggttct gatgtgccga atcacgcagc gatttatatt
     4021 ggtgaacaaa tggtaatcca ccatagcccg aaccgattat ctaagcgtga tttatatgac
     4081 ggttattggt tacgccatac ccacagtatt tggcggcata aactggcgga tagattggat
     4141 tttgacggca tatttaatga tataggagaa caatatgaaa tttagtaaat atcaattatt
     4201 agttaataag atctgcttta tttgtggtaa aaaagattgt ccacaaatga aaaagagtaa
     4261 agactacaaa gactttttgg atgctttaga aaaaggggat gttgataaag cagataaaat
     4321 atacaatacg aagttttcac agttttctaa atcttttggt catgaaatgg aaaagaattt
     4381 agagaaaaat cgtatacctc ctatttatca gggagttcca tttgattctt ttgacttata
     4441 tcagcattat tcttatggta atggagaggc attaaatctt tcatccgttg gattaagtaa
     4501 taaaattcgt cctctagtga ataaagataa agcatttggt aaatccaatg gaagtataga
     4561 aagccgattt atttcgcaat ataaaaatga aggacgcaca tctttctcca atgcttatga
     4621 ttttacaaaa gaagcatcgg gtattgcaga tccgttatgg gcgttaggaa cagctaccat
     4681 tagtggagaa ttgaaagata tacaaatttt tcccggtggt attgctaggg gaaatatcca
     4741 ttatagtatc agggacagat tcactgaccc atttgataca ttcaatttta ctaaaggaga
     4801 atggaaccca aatggaacac cttatattat tcaagatagc tggataaaat cggtacgatt
     4861 ttcgat
//
LOCUS       DANMGB010000168         4842 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.169, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000168 DANMGB010000000
VERSION     DANMGB010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.169"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(48..614)
                     /locus_tag="PXG19_002185"
     CDS             complement(48..614)
                     /locus_tag="PXG19_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067446.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQKKFDLVN"
     gene            complement(1147..1473)
                     /locus_tag="PXG19_002186"
     CDS             complement(1147..1473)
                     /locus_tag="PXG19_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067447.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1521..3152
                     /locus_tag="PXG19_002187"
     CDS             1521..3152
                     /locus_tag="PXG19_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL6067448.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            3067..3960
                     /locus_tag="PXG19_002188"
     CDS             3067..3960
                     /locus_tag="PXG19_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6067449.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3953..4816
                     /locus_tag="PXG19_002189"
     CDS             3953..4816
                     /locus_tag="PXG19_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6067450.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1595 a          926 c          936 g         1385 t
ORIGIN      
        1 atataaaagt cggcaataac attattttat aataactaat gtgaattcta gttcactaaa
       61 tcgaatttct tttggtaaat ctcattcctt tctaatatat agcgttttac ctcatcatcg
      121 taaaaccatt caagaaagtt atcaacatct tcaatgaact tttctacctg ttgctgtgca
      181 tatgctatcg tatcggtagg gaagatttga taatgaaacg gattgcgttc atcataactc
      241 tgccatttgt cataatcggc ttgtttacgc cgcgcttctc ttgcctccca gtcgattttt
      301 tcttccactt gatattctgg ctctggctta ttatacaaaa tacggatgag ttccttttct
      361 tcatcctcaa gcagaatatc ttcaaaccag atttcagaaa ataggctgcg cttgaaaatg
      421 aaagacttca tcatttcccc tccacacgcc aataagtttc ccaatgcttc ccgtttcgct
      481 ctatcttttg ccgaaaatat ccagtttttc gatacaaaac agtacattgg catgtcatgc
      541 aaataggttc ttcgtgaaat ggctaattca ggaaaatgag gaataagctg taaccccatt
      601 attaagcctt ccatactgca cacgatctta cttaattgtc cgtaatcgcg taaaaaagca
      661 atgtcagttt ttatcaacca caacgatagg ctgactaata tgaacataaa gatgagataa
      721 tagatcggtt ttaaggctaa ggcgcgccga caaagccaca ttaagagtgg aatcgtaacg
      781 agatcaaaga aaaatgatga gtctatgatg atttccttat gtgagttgat gaataatcag
      841 gcatgaagga aaccttaaaa aggaaaagtc ccttcattac cactttttaa aaccttttaa
      901 ggcttaaaaa tcaaaagtcg taatgaaggg actattgtcc gtgggcaaaa aggtattagt
      961 tatagggggc tttgtcaagc gaaaatttac tgtgcatttt ctcgccaaaa ctgatttaag
     1021 ccttgataaa atctcgaaag taccttgtca agaaaaatct ttttagtggt ttgattgcta
     1081 gttttttgag caaaactatg ctgtaatgca gtaaaaatac agtttctatc tgtgtttgga
     1141 atccagttac aaattggaga gtaatacaaa gcatatttgc ttgagcatct cagcatcttg
     1201 gtagcattct tctgattttg aaatatccca aacaagctgc cgtacacatg atgaaattct
     1261 cattaacgcc aataaatcta ggctacttgg caatcttttc cctgcaaccc aatctttaac
     1321 tgttttctca ctcacatcta atgcattggc gaccattttc cccgtccaat attgagcatg
     1381 catttccttt cgtaacgcaa ttgcaaaccg ctctttcgtt tcaatctcat tgagtgtaat
     1441 tttgggtaag attttaccct ttgagtgcaa catatttcct cccgattcct ttatattggt
     1501 gtagataagg agtcattaga atggttacac gtacaaagaa tcaacctaaa aatcaggcgg
     1561 tttcctacat tcgaatgtca acggaacacc aagaattttc accagacctt caacgttgct
     1621 ttatcgaaaa ttatgctaaa gaaaatgggc tagaaatcat tagagaatac attgatgaag
     1681 gaaaaagtgg gctaaccgca gaacaccgcc cacaattcct ttcaatgata caactcgtac
     1741 aaagtggaca agccgacttc gatcatattt tggtgtatga cgtgagtcgt tggggtcggt
     1801 ttatgaatat tgatgaatcg gggcattatg aactgatttg tacctaccaa ggcattaaag
     1861 tccactattg cgccgagcca ttcaaaggga atgatattgc ctctcaaata tataaaacca
     1921 tgaaacgttt gtcggtagga gactactgtc gtgaactcgg agtgaaagta tttaacggtc
     1981 aaaaaaatct gatccaacat ggatttagac aaggtggggt agctggattt ggattgcgta
     2041 ggagattgat tgactgtcaa ggaaacccta aatttgatct ccaacgtgga gatagaaaga
     2101 gcctacaaac cgacagagtg attttggttg caggcccaaa ggaagagcag gaaattgtcc
     2161 gacaaattta ccatgatttt gtttatcaac ataaaacgga acaacaaatt gctgatagct
     2221 taaatgcaca aggcattgtt actgatagaa atacagcatg gacgaaaggc gtagtacatc
     2281 aaatccttat taacgaaaag tatgtcggcc acaatgtttg gaataaacgt agtgcatcaa
     2341 aaacacgcga atataaaggt aaaaaccccg tagaagagtg ggtgcgagct gagaatgtat
     2401 ttgaagctat cgtgccacaa gccttattta atgcagccca aaccattatt catcaacgct
     2461 ccgcccgatt atctgacgat gaaatgttag agcaactcaa gctacttttg aaagagaaag
     2521 ggaagctgtc tggcttgatc attgatgaag ccgaaaattg tccatcaagt agcgcgtaca
     2581 gtagccgatt tggaagccta cttaacacat atactttaat taactatgaa cccgaacggg
     2641 attaccacta tgtagagatc aaccgattac tccgtcagca gcataaaaat ttcgtacaac
     2701 aaacacttga taccattatt gaattggggg gagtggtttt gagcgatgat gtaaccgatt
     2761 tagtccacat caataatgaa tttaccgcct caatcgtatt aagtcgttgt cgcctaacgc
     2821 catcaggaag caaaagatgg ttgatccgat ttgataccag tttaaatccc gacataacaa
     2881 ttgcagtgcg catcaatgag agtgccacag aaattcttga ttactacctg cttcccacaa
     2941 ctgaaaaggt aaatgaaaaa ctacgattgg ctgagagtaa tcctgccgaa cttgaaatct
     3001 accgccatga taatttagat cgctttttta ttatggttga acgtatttta gtcaaggagt
     3061 ttatctatgc aaaacgacac cattcaaatt cttcctatcg acaaaattcg ggtactcaat
     3121 cccagaacgc gcaatcagaa agtctttgct gatctggtcg aaaacattgc aacgattggt
     3181 ctcaagagac ctattaccgt aacgccatct gtcgatagtg ctgaatatta tgatttgtta
     3241 tgcggtcaag gtcggcttga ggcttgtcag gtgcttggtg agctattcat accttgtcgc
     3301 gttgtgaacg caaatagtga agaaagctac ttgatcagcc ttgtggaaaa tattgccaga
     3361 cgtcagcatt cctatatgga gctgctttca ggcatcaaaa tactcaatga tagaggttat
     3421 aagcccgttg atattgctcg caaaatcggt ttctcaaaaa gccatgtcaa cagtatctta
     3481 cacctcatca atgctgggga agagcgcctt atcaatgcgg tagagcaagg aattttaccc
     3541 attaccatcg ctatttcgat ttctcgttca gacgatcagg aagttcaaaa acaactcgcg
     3601 gaactttaca ccaatggtac attgaaaagc accgatattg ccaaaatacg taacctgatc
     3661 caccgtagaa atcttgctgg taagaaagcc aatacaggta tttctggaag tattagatca
     3721 tctatttata atcccaaaac tgtggtgaat atctacaaag aggaaacgga aagacagaaa
     3781 atgatgatca agcaagcgga ctatgatgaa aaacaactct ctattatctt gtcttgctta
     3841 aataaactct ttgaggacaa atactttcaa ctcgtcctta aatcagaaca tttagacgat
     3901 atgccaaaag atttaagcca acgaatgtta aaacaacgag agggaaatat ttatgcctaa
     3961 acatattact tatgcctttc ataatcagtt aatttcgctt ccaattgatg agattattcc
     4021 attaaaaaag atggataaaa attttgagaa aagcactaag ttccaaagca ttctggcttc
     4081 aattcgtgaa atcgggattg ttgaacctgt ggtcgtctat ccagaagaaa acaaccaata
     4141 tattttgtta gatggccatt ctcgtgtaca tgcactcaaa aagctaggtg tggataaggt
     4201 gctttgtatg atttctaccg atgatgaagg ctttacttac aacaagcaaa ttaaccgctt
     4261 aaccgccgtt caggaaaata aaatgctgat gaaaaccatt gagcgcgggg tttcggatga
     4321 actgatcgca agaacactca atatcaatct aaaagcacta cggcagaaaa tgaatatgct
     4381 taatgggatc acaagagagg ttgttgatat attggccaat aagcaggtca gtaaagagat
     4441 atttcggatt ttgcgcaaga tgaagcctga acgccaaatt gaagtggcac aaatgatgat
     4501 cgccagtaat aagtttacat tgacatacgc caatatgatg ttgctcagtt cacgcaagga
     4561 ggaattagtc gaaagccaca agtctaaaac cacgaatgat gatttaaccg atctttccat
     4621 tatgcaaaaa gagctagagc gacttaaaga gaactataaa atttccgaag agaaattggc
     4681 ggacttaaaa atgggattgg ttgtggcgaa agggtatgtc aaaaaactat tgaataatgc
     4741 tgccgtggta gatttgcttg aaaatgatca gagtgaaatc tatcttactc ttaaagaagt
     4801 atgtgatatt caataatata atatctagct aataacctta at
//
LOCUS       DANMGB010000169         4831 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.170, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000169 DANMGB010000000
VERSION     DANMGB010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.170"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            3..488
                     /locus_tag="PXG19_002190"
     CDS             3..488
                     /locus_tag="PXG19_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL6067451.1"
                     /translation="MKIKTLSLIMLLSVTVNAAPVELHQFDSPKQESDYRALIQELRC
                     PQCQNNNIADSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPAT
                     IMLWLLPLILIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEE
                     K"
     gene            485..1396
                     /gene="ccmI"
                     /locus_tag="PXG19_002191"
     CDS             485..1396
                     /gene="ccmI"
                     /locus_tag="PXG19_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL6067452.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1393..1998
                     /gene="mog"
                     /locus_tag="PXG19_002192"
     CDS             1393..1998
                     /gene="mog"
                     /locus_tag="PXG19_002192"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL6067453.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            2008..2346
                     /gene="glnB"
                     /locus_tag="PXG19_002193"
     CDS             2008..2346
                     /gene="glnB"
                     /locus_tag="PXG19_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL6067454.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2427..2906
                     /gene="lspA"
                     /locus_tag="PXG19_002194"
     CDS             2427..2906
                     /gene="lspA"
                     /locus_tag="PXG19_002194"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL6067455.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2917..3861
                     /gene="ispH"
                     /locus_tag="PXG19_002195"
                     /gene_synonym="lytB"
     CDS             2917..3861
                     /gene="ispH"
                     /locus_tag="PXG19_002195"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL6067456.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3861..4109
                     /locus_tag="PXG19_002196"
     CDS             3861..4109
                     /locus_tag="PXG19_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL6067457.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4316..>4831)
                     /locus_tag="PXG19_002197"
     CDS             complement(4316..>4831)
                     /locus_tag="PXG19_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6067458.1"
                     /translation="SANQYIFNSDWFTHNVPSLASIFEYVKPRRILEIGSFEGRSSVF
                     FIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRFIHNVTLAQQKFQNVVLYKH
                     RGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDALLAHRLVRKGGVISFDDYLW
                     SPDETGKQRHY"
BASE COUNT         1523 a          976 c         1043 g         1289 t
ORIGIN      
        1 ttatgaaaat aaaaactctc agcctaataa tgcttctaag tgtaacagtt aatgctgctc
       61 cggtagaact gcaccaattc gacagcccga aacaagagtc ggactatcgt gccttaattc
      121 aagaactgcg ttgcccgcag tgtcaaaata ataatatcgc cgattccaat gcgactattg
      181 ccaccgatat gcgggcaaaa accttagaat tgctcaaaca aggcaaaagc aaagacgaag
      241 tggtggatta tatgattgaa cgctacggca atttcgtcac ttacgacccg cctctcacac
      301 cggcaaccat tatgttatgg ctgttgccgt taattttaat tgccttaggg ctgggggtgg
      361 tgttgcgtag aaagaaaaac aaaccacaag cggtcaattt tgagcaaaat actgcaaaac
      421 cgaccactca tctcgctcaa gatgagcaag aacgtcttaa ccaaattctc aataaggaag
      481 aaaaatgaat ttctggctgg caattatttt cgttacactg attgtatgtg gcgtggcgtt
      541 ttatccgtta cttaaaaaga acaagcaaat cgataacacc aagcgagaca gcttaaacaa
      601 agccttctat tttgaccgct taaaagaagt ggaaaacgaa gcgaatgaag gggtgattga
      661 tgaccctgaa caaaccaaat tagagctaca aaaaaacttg cttgatgata ttccacacag
      721 cacacaaagt gccacaagtg aaaaattaac gctcggcaag tcgtggtttg tggcattgat
      781 tttatttgtc ggcggtatca gctttgcgat ttacagcaat gtcggttctt ggttctccaa
      841 ctcaatgtta gacaccactc accaaaaatt agacagcttc tatgagcgtt taaaaaccga
      901 agagaccaat ccgctctcac aagaggaaat gaaccaattt gcgatggcat tacgggtaga
      961 tttacaaagt aatccgaatg acgacaaaaa atggtatatg ctcggtcaaa tcgggatggc
     1021 gttagatgat ggtcagcttg cacacgatgc ctttagcaaa gcggctcaac tcaagccgga
     1081 taacttagat tacaaactca gccacgccca actgctgctc ttttccgaag cacaggaaga
     1141 caaaaaacag ggtgaaacct tgttaaaaga gattatccgc caagaccaca caaactttaa
     1201 tgcgttaagt ttattggcgt tccactcctt tgaaaaagaa gatttcaaaa tggcggcaat
     1261 gacgtgggga atgatgttaa aactactgcc tgatgaagat cctagcaaag taacggtaga
     1321 acgcagtttt aatatggcgt tatccaattt aagtgaggcg gaaaaacaag aattgcaaaa
     1381 aggtgagaaa aaatgaccgc ttgtaaacca cttagcaaag agaagttgaa aatcggcttg
     1441 gtgtcggttt cagaccgagc ctcgcagggg gtttattcag accaaggcat tcccgaatta
     1501 agggcgtggc ttgaatctgc cttaaccgag ccgtttgagc tggaaacccg cttaattccc
     1561 gatgagcaag ccattattga gcaaacctta atcgagttag tcgatgctca cgcttgccat
     1621 ttggtattaa ccaccggcgg caccggcccg gcaaaacgtg atgtcacccc agatgccacc
     1681 cttgctgtcg cccaccgaga aatgcccggc tttggcgaac agatgcgaca agtgagcctt
     1741 cacttcgtgc caaccgccat tctctctcgc caagtgggag taattcgcca cgacagtctg
     1801 attttaaatc tgccggggca accgaaagca attaaagaaa cgctggaagg tgtgaaagat
     1861 gaacagggca aagtattggt taaaggtatt tttagtgccg tgccatactg tttacaactt
     1921 ttaagcgaaa tttatgtcga aacccacgca gctatttgcg aaagtttcag acccaaatcg
     1981 gcaagacgag aaaattaagg ctaaaaaatg aaaaaaatag aagcaattat taaacctttt
     2041 aaattagacg atgtgcgtga agccttaacc gatgtgggtg tcagcggaat gagtattacc
     2101 gaaatcaaag ggtttggcag acaaaaagga cataccgagc tttatcgtgg ggcggaatat
     2161 gcgattgatt ttctaccgaa agtgaaagtc gaaatcgtga ttcccgacga gttggaagaa
     2221 cagtgcattg aagcaattat ggaaaccgcc caaaccggca aaatcggcga tggcaagatt
     2281 tttgtgtatg atgtcgggcg ggtgatccgc attcgtaccg gcgaagaaaa tgaagaagcg
     2341 atttagtttt gcaaaaaatc cggcaaaaac gaccgcttgc agggggattt ccatctactc
     2401 tttttacatt aaattttgga tattaaatga aaacaggctt aaaatttctt tgggtgagtt
     2461 taattgtaat catcattgac ctttggtcaa aatacattgt agtgcaacat tttgaatttg
     2521 gtgaaagcat taatattttg ccgattttta acttcactta cgcccgaaac tacggggctg
     2581 cctttagttt ccttgccgac cattccggct ggcaaaaata tttcttttta gggctggcgg
     2641 tagtgatttc cagtgcttta gtggtggctc tttggaagaa tcaagcggtc aaaaaattag
     2701 aaaatattgc gtatgcctta attattggtg gagcgattgg gaatgccatt gaccgtgctt
     2761 acaacggcta tgtagttgat ttccttcatt tttattggga tatttatcac taccctgtgt
     2821 ttaatattgc cgatattgcg atttgtgtgg gtgcaggctt actgatttta gaagccttta
     2881 taaccaaaaa agaaccgaaa aaataagagt gattaaatga aaattttatt agcaaaccca
     2941 cgcggttttt gtgccggcgt ggatcgagcc atttcgattg ttgaattagc cttagaaatt
     3001 cacggtgcac ctatctatgt tcgccacgaa gtggtacata acaaatttgt ggtggatggc
     3061 ttgaaagcca aaggggctat ttttgttgag gagctacacg aagtgccgga cgatgctatc
     3121 gtgatcttct cagcccacgg ggtgtcgcaa gtagttcgcc aagaagccaa aaatcgtggc
     3181 ttaaaagtgt ttgatgccac ttgcccactc gtgaccaaag tgcatatgca ggttgcccga
     3241 gccagtaaaa aagggacaaa agcaatttta atcggtcacg aaggtcaccc tgaagttatc
     3301 ggcacaatgg gacaatacaa taaccaagaa ggtggcattt atttggtaga atcggtggaa
     3361 gatattgcca acttgccggt ttccaacaac gatgaattaa cttttatgac gcaaaccaca
     3421 ctttccattg acgataccat tggcgtgatt gaggcgttaa aagagaaata tccggcaatt
     3481 caaggccctc gcaaaaatga tatttgttat gctaccacca atcgccaaca cgcagtgcgg
     3541 gaactggcag aacaatcaca attagtgtta gtggtaggtt caaaaaactc ctcgaactca
     3601 aatcgtttgg cggaactcgc ctctcgaatg ggtgtgatgt caaaactgat tgatggtccg
     3661 caagatattg atccaacttg gttggagggt attgaaacta tcggtattac cgccggtgct
     3721 tccgctcctg aagtgttggt gcaatcagta atttcgcatt taaaaaccct tggcgtaacc
     3781 gaagttgaaa ccttagtcgg caacgaagaa gacgtggtgt ttgaagtccc gaaagagtta
     3841 cgcatcaaag aggtaaaata atgacagaaa tcaaccgctt taaattagaa tgggcgtgcc
     3901 gacgtggtat gcgtgagtta gacaaaatga ttatgccgtt ttaccaaaat cattttaatg
     3961 aactcaatga aacccaacag caagctttcg ttgaaatgct caattacagc gacccggaac
     4021 tgtttcgctg ggtaatgctg caagcacctg ccccaaccga agaaatcgct gaattgatta
     4081 ggttaatgcg agataaaatt gagacctaga gctaatagat taacctcttc tttggggtaa
     4141 atatatagct acttacccca aagaagacta aattcattca acttttacaa aataacccta
     4201 aactagaaaa gttaatcttc caatttaata atatgttgct gataagctat taaaccttgt
     4261 attacatgca ctttctgctg ataggtattg acatagtgat caacagcggg ttttactaat
     4321 aatgacgctg tttacctgtc tcatctggtg accaaaggta atcatcaaaa ctaataacgc
     4381 ctccttttct cactaaacga tgtgcaagta aagcatcgaa caacacatct ggcgcttcgt
     4441 gagatccatc tatgtaaata tagtcaaaat aatttatata tccatttgcg agaagttcaa
     4501 tcattttttg gtgagaatag ccacggtgct tatataacac aacattttgg aatttctgtt
     4561 gcgcaagagt gacattatgg ataaatcgtt gttctatttc tcccatgtcc caaactcctt
     4621 gatgctctgc tcccccttcc caactatcaa tacaatgaat ttcaacttgt gattgatatt
     4681 tcaatgcttc ttcaatgaaa aagacagatg atctaccttc aaatgatcca atttctaaaa
     4741 tcctccgagg ttttacatat tcaaaaatag aagctaatga aggaacatta tgagtaaacc
     4801 aatcagagtt aaaaatatat tggttggctg a
//
LOCUS       DANMGB010000170         4770 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.171, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000170 DANMGB010000000
VERSION     DANMGB010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4770
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.171"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            41..370
                     /gene="trxA"
                     /locus_tag="PXG19_002198"
     CDS             41..370
                     /gene="trxA"
                     /locus_tag="PXG19_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018357021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL6067459.1"
                     /translation="MSNVIHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDD
                     LSVDAQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMA
                     EFIKQAL"
     gene            541..1764
                     /gene="hflK"
                     /locus_tag="PXG19_002199"
     CDS             541..1764
                     /gene="hflK"
                     /locus_tag="PXG19_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL6067460.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1767..2654
                     /gene="hflC"
                     /locus_tag="PXG19_002200"
     CDS             1767..2654
                     /gene="hflC"
                     /locus_tag="PXG19_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL6067461.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2828..4126
                     /gene="purA"
                     /locus_tag="PXG19_002201"
     CDS             2828..4126
                     /gene="purA"
                     /locus_tag="PXG19_002201"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL6067462.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(4286..4356)
                     /locus_tag="PXG19_002202"
     tRNA            complement(4286..4356)
                     /locus_tag="PXG19_002202"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4326..4328),aa:Arg,seq:tct)
     gene            complement(4505..>4770)
                     /locus_tag="PXG19_002203"
     CDS             complement(4505..>4770)
                     /locus_tag="PXG19_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067463.1"
                     /translation="MYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTNFVIITSEYKY
                     IDAQSAKEITDAPLTKEDIGKTPTQIMLGRIYKYLKETGQIVV"
BASE COUNT         1457 a          858 c         1099 g         1356 t
ORIGIN      
        1 agggcgtttc tttttttatt taatatttaa ggataaactt atgagcaatg tcattcatac
       61 aacagatgct acatttgaac aagatgtttt aaaatcagat gtaccggtat tattagactt
      121 ctgggcgcct tggtgtggtc cttgccgtat gatcggcccc gtacttgacg atttatctgt
      181 tgatgcacaa tttgatggta aagtaaaaat tgtcaaaatg aacgtagatg aaaatccatc
      241 tgtaccagca caatttggcg tacgcagcat tccattttta ctattattca aaaatggtga
      301 agtgattgcc cagcaagttg gtgcaattcc gcacgcccaa atggctgaat ttatcaaaca
      361 agcattataa ttttaagagc aatactaggg cgaatttatc gccctatttt tttgcaaata
      421 aatagtgaaa aaagaccgct tgtttcagat aaacctagtc aaaagcttac taaataggta
      481 caatcactaa cttgcattct aagctttaaa gtgcgattcg attttatttt ggagatattt
      541 atgtcgtgga atgaatcagg caatcagcaa gatccttggg gtaaaccggg gcagaaaaaa
      601 gctgagccaa agcctgagca acaagaacag ggttcacaac aagagccgac caataatcaa
      661 agaaatgaac aacagccccc tgatttagaa gaagtattta gcagtttatt aaaaaaaatg
      721 gggggtggaa aagggcctaa taatagttca aatcaaccta gtgcaagctt agggaaattt
      781 ctacctgtgg ttttaggtct tgcagcagta gtttgggttg gctcaggttt ttacactgtg
      841 caagaggctg aacgtggtgt ggttactcgt ttaggtaagc tgaatgatat cgtgttgcca
      901 gggttgaatt ggaaaccgac ttttattgat tcggttacaa gagtaaacgt agaacgtgtt
      961 tcagagctga acaccagtgg ctcaatgctg actcaagatg aaaatatggt gcaggtagaa
     1021 atgacggttc agtatcgtgt ggaagacccg gctaaatatc tgtttagtgt gagcaaccct
     1081 gatgacagct taaaacaagc aacagacagt gccttgcgtt atgtgattgg tcatatgacg
     1141 atggatgaaa ttttaaccac agggcgtgca accgtgcgtg aaagaacgtg gtcgacattg
     1201 cgtgatatta tcaaaaccta tgatatgggt ttattggtaa cagacgtaaa cttccaatat
     1261 gcacgaccgc ctgaagaggt gaaagccgcc tttgatgatg caatcaaagc acaagaagat
     1321 gagcaacgct taattcgtga agcggaagcc tatgcaagag gtgaagagcc gattgcacgt
     1381 ggccaggcac agcgtacgat tgagcaagct caagcttaca aagaagcagt tgtgttaaat
     1441 gcgaaagggg aagtggagcg tttgagtcaa ttattacctg aatataaagc ctctccagag
     1501 ctgactcgtg aacgtttata tatccagaca atggaaaaag tcatgaaaaa tacgccgaaa
     1561 gtggtgatgg attcaagtgg taataatttg aatgtattgc ctttcgataa gctaatgaat
     1621 tcttcatcgg taataaaagc ggagcagcct gcggcggcac aagtagttac accacaagtt
     1681 gttcagccgc aagtacagcc aagaacacaa attcagccgc aacaagcaga acaacaagaa
     1741 ccaactcgta aggggagatt ttaatcatgc gtagattatt agtacctata cttgctgtag
     1801 ttgcttttgt tgtgctacag gcaatcacca ttgtaaacga gggcgagcgt ggcattatgt
     1861 tacgttttaa caaagttcat cgtgatagcg atcaaaaagt ggtggtatat gaaccgggga
     1921 ttcactttaa agtaccattt atcgatagtt taaaggtatt agatgctcgt attcaaactc
     1981 tagatgggca agaagaccgt tttgtaacag tcgagaaaaa agatttatta gtggactcct
     2041 atgtaaaatg gcgaatcagt gattttggcc aattttatac ctctactggg ggggattacc
     2101 aaaaagcggc ggatttatta cgccgtaagg taggggatcg tctgcgttcc gagattggtt
     2161 ctcgaaccat taaagatatt gtatccggct ctcgtggtga gttaatggca ggagcccaaa
     2221 aagcgctgaa tgccggtgaa gatggagcag agcgtttagg aattgaagtg gttgatgtgc
     2281 gagtgaagca aatcaactta ccaaatgaag tttcttcttc aatttaccaa cgtatgcgtg
     2341 ccgagcgtga tgcggttgct cgtgaacacc gctcacaagg taatgagaaa gcagaggtaa
     2401 ttcgtgccga agtggataaa aaagtggtgc tgattttggc aaatgcgaac aaaactgccc
     2461 aagccttgcg aggtgaaggt gacgctcaag ctgcaaaact ctattcagag aaatttggta
     2521 acgagccgga attttacagt tttattcgta gtttaaaagc ctatgaagat agctttgccg
     2581 aaggtcaaaa taatatgatg ttattaaagc caaacagcga attcttacgc tttatgcaag
     2641 caccgacaaa ataattgtat ctataaaacc cgatcttgta tcgggttttt aattttcatc
     2701 cctattctga tcataacaag cggtaaattt tggctgattt tttgcaaaaa atttgaaaaa
     2761 attgaccgct tgcgatatga agttataatg ggtttcgtta ttcatcctaa ctaaaagagg
     2821 catttctatg ggtaaaagtg ttgctattct tggcgctcag tggggcgatg agggaaaagg
     2881 caaaattgtt gatttattaa cagatcgtgt gaaatatgta gtacgttatc aaggtggaca
     2941 taatgcaggg cataccttaa tcattaatgg tgaaaaaacc gttctgcgtt taattccatc
     3001 gggtattttg cgtgataacg tgacttgttt aatcggtaat ggtgtagtgc tttctccaga
     3061 ggcattaatg aaagagatgg gggagctaga agaacgaggc attaatgtgc gtgagcgttt
     3121 aaaaatttct gaagcttgcc cgttaattct gccttatcac gttgcgatgg atcacgctcg
     3181 agaagcggca cttggtaaaa acaaaattgg tacaacagga cgtggtattg gcccagctta
     3241 tgaagataaa gtcgctcgcc gtggtttacg tgtcagcgat ttattcgaca aagaacattt
     3301 tgccgcaaaa ttaaaagata ttttagatta ctacaacttc caattagtca attattacaa
     3361 agttgaagcg gtagattatc aaaaaacctt agatgatgtg tttgcgattg cggatgtgat
     3421 taccggaatg gttgccgatg tgacaacttt acttcacgaa gcacgtgaaa acggcgacaa
     3481 tattttattt gaaggggctc aaggcacgat gttagatatc gaccacggta cttacccgtt
     3541 cgtaaccagc tcgaatacga cagcaggcgg tgtggcaacc ggatcaggct acggtcctcg
     3601 tcatttagat tatgtattag ggattatcaa agcctactgt acccgtgtag gtagtggacc
     3661 gttcaccacc gaactatttg acgatgtagg tgctgaaatt gctcgcaaag gtaatgagtt
     3721 cggagcggta accggtcgcc ctcgccgttg tggctggttt gatgccgtag ccgttcgccg
     3781 agcagtgcaa atcaactcca tttcaggctt ctgtatgact aaactcgatg ttttagacgg
     3841 attcaaagag ctaaaaatct gcgttgccta caaaatgcca aacggaaaaa ttgtcgaata
     3901 tgcccctctt gcagcaaaag actgggaagg tgttgaacca atttatgaaa caatgccggg
     3961 ttggtctgaa aatactttcc gtgtgacaaa acgtgaagat ttaccacaag ccgcattaga
     4021 ttacattaaa cgtatcgaag agctggtcgg tgtgccggta gatattcttt ctacaggtcc
     4081 ggatcgtgtc gaaacgatga ttttgcgtga tccttttgca gcttaataaa agataaaata
     4141 aagccattta gtgagataga gctagatggc ttttttgttt gaaccagtaa actttacttt
     4201 ggcacaattt tgtcacaata cagaaaatag ttctttagcg tgagtttttg aggctgtgta
     4261 agtatttgaa tttaaaagaa tttaatggca cgccctaaag gattcgaacc tttgacccac
     4321 gccttagaag ggcgataggt attttataaa aggcgtttat tttaactaat aaaaacaaag
     4381 acttatagag ataacccctc tatattacct accattattt cacatctttt tacattaaat
     4441 aacaccattt acggtacatt tatggaacac gttggtgatg agctagtctt caaaagttac
     4501 taaattaaac tacaatctgc cccgtctctt ttaagtactt atagatacgc cctaacataa
     4561 tctgcgttgg cgttttgcca atatcctctt ttgttagcgg tgcatcagta atctccttgg
     4621 cggactgtgc atcaatgtat ttgtactcac ttgtgatgat tacaaagttt gttacttctc
     4681 catcggtatc atcgcctgta ccgaccacat atttagcatt gagcgagccg tcatcttgcg
     4741 ttgagtagct tgcgatggtg gaatacattg
//
LOCUS       DANMGB010000171         4690 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.172, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000171 DANMGB010000000
VERSION     DANMGB010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4690
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.172"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            139..579
                     /locus_tag="PXG19_002204"
     CDS             139..579
                     /locus_tag="PXG19_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6067464.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXG19_002205"
     CDS             605..892
                     /locus_tag="PXG19_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067465.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXG19_002206"
     CDS             993..1916
                     /locus_tag="PXG19_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL6067466.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXG19_002207"
     CDS             1906..2646
                     /locus_tag="PXG19_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL6067467.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
     gene            2865..3446
                     /locus_tag="PXG19_002208"
                     /pseudo
     CDS             2865..3446
                     /locus_tag="PXG19_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            3447..3617
                     /locus_tag="PXG19_002209"
     CDS             3447..3617
                     /locus_tag="PXG19_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6067468.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(3666..4634)
                     /locus_tag="PXG19_002210"
     CDS             complement(3666..4634)
                     /locus_tag="PXG19_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL6067469.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
BASE COUNT         1495 a          910 c          941 g         1344 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacatag taggggcggg tcctgtgccc
     2701 gcccgactaa tattaagata acgggcgggc acaggacccg cccctacgat tagtatgtta
     2761 ggtttaaaaa tacttcatac caatatcccc taagttgggt aaaaccttat gaaataggat
     2821 acaagcggtt agtttctctc aattttttac caaaggatca cgcaatgagc caaccggctt
     2881 tacggcaaat ttccccctcg cagctagaag atattcgtct gcaaatggtg aagtttgcct
     2941 ttttacagtt aaaaaataac gaacttgccg aagatgtggt gcaagaggcg tttgtcagcg
     3001 cttataaata tgccgacagc ttcaaaggtg aaagtgcgtt aaaaacgtag atttttgcaa
     3061 ttttaaaaaa caagatcgta gatttagtga aagccaaagg caaattggtg gcagtatctg
     3121 agctgatgga agaagacgat cacgatcttg ccgataaatt gtttaacgaa aatggcggtt
     3181 gggataaaga tgcttatcaa tctaatgagt ggaagaacac cgaaagccat acctattccg
     3241 ctcaattctg gcaagtattt gaattttgcc taaataatct gccggcaaat caagcaaggg
     3301 tgtttatgat gcgttcccat ttggaaatgg aaaccgaaga aatttgcgca gaatgtgaga
     3361 tttcaccagc aaatgtgcat accttactgt atcgggcaag attgcagtta caggtctgtt
     3421 taagtcaaaa atggtttgga ggttaaatgt taaaatgtaa gcaaattacc gaattagttt
     3481 ctctgtccca agaacaaaaa ctgacattaa aacaacgtgt taatgtgcaa gttcatttaa
     3541 tgctttgttc tcgttgcaga gcctttagcc aaaactgcaa aaccgtagat aagctaatga
     3601 aagaatttaa ctcttagcgt aaaagcaagc ggtaaaattt ttaataaatt ttaccgcttg
     3661 tcatcttatt gatgttctag cactgtccct ttacggaaag cttcggaact ttttaacacc
     3721 ctcatcaaaa tatagtagct caagcctgat ggaattaaac tgacatacca agagagatcc
     3781 accacaatca gtgagcaaaa cgaaccgata gcaatcgcaa taattgctgc ccagttaatc
     3841 cctttgaaaa taccttcttt attatataag tcatttacgt ttaaagtacg ttttcttaag
     3901 atgtagtaat cgacgaccat taccgcaaaa atagggccta agaatgccga gtaaatttta
     3961 ataaacaaag ataatccatc tgctgattca gcagttacca atttccaagg cattacacat
     4021 atagaaagaa tgcccactaa aatggtggca tgcgaccatt tcattttaaa tgaatccatt
     4081 aaaatgtaag atggcggaac aatattattc aacacgtttg tcgtaacctg tgcaaaagca
     4141 atgaataata acgttattac tgttaaaaat ttattatcca ttgcagttgc aaatacttca
     4201 attgggtcac tattgcctgt agctgccgta actaacaacc ctattaaacc cataaataag
     4261 gttacaggga ggattgataa tacataaatc acacctgttg ctgttggggt tgttcctttt
     4321 ttaacgtggc gagaataatc ggaagcattt aaaatcattg ttgaataaat acccaagaat
     4381 gctgtagttg cagcccagaa tggcattccc caagtgcctt caatattggc aaagcgctcg
     4441 cctatttcta cagagaattt tgtattcaca acataaagca tataagcaag aataccgatg
     4501 aggaacacac aagaaacatt ttccaaccat ttaatacctt taaaaccatt aatggataag
     4561 ccaacttgaa taacagtgaa tagcacataa acaacaggca agttatcaaa accgaacaac
     4621 agttttaaac acatattgac agctattttt tgcgttttat catttaattc aaaaattaaa
     4681 ttaaatctat
//
LOCUS       DANMGB010000172         4656 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.173, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000172 DANMGB010000000
VERSION     DANMGB010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.173"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            25..2172
                     /locus_tag="PXG19_002211"
     CDS             25..2172
                     /locus_tag="PXG19_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6067470.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2185..3303
                     /locus_tag="PXG19_002212"
     CDS             2185..3303
                     /locus_tag="PXG19_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6067471.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3364..4626)
                     /gene="rho"
                     /locus_tag="PXG19_002213"
     CDS             complement(3364..4626)
                     /gene="rho"
                     /locus_tag="PXG19_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL6067472.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
BASE COUNT         1396 a          875 c         1054 g         1331 t
ORIGIN      
        1 cacccaatat aaggagaaat cataatgaaa cgcttgcgtt attcttatct tgctttgata
       61 ttaggttcag ccttaccttt atcggcttat gctgacggtt atttaagtaa cgataatatt
      121 cggcaatttg atgcccgttt taattttttc ctcgcaaatc cactacctgc gcctattgca
      181 aaagcagatg ggcgtggtga agcgattgag aatttggtgg tgaaatatgc atcagattat
      241 cttaatgata tctatcttaa agaggatgtt attcgttttc gccgttggca gtggcaagat
      301 ctctatacgt cattggattt aaaaacgaaa caaaagcccg attatttaaa tacttaccga
      361 ttacaggcgg aagcgtactt tatcaataag caataccaag aagcattatc tcaactggat
      421 caaattctgc ggcgtaaccc taatgatgtt catgcaatgg caatgagtgt ggttgcaagt
      481 cgggtattgg aaaatcctaa tactgaagcc gagcgtttat tagcgcttta tcaaatctct
      541 ccaagtattg cgcaaaaggt gcagcaatat ctacatttta cagacactat gcttgctgcc
      601 agctatggta gtgagcctca aacaacaatg atccccgaca ccatagcggt atttgggcaa
      661 tcgcctaacc cagacggtac tccaagcaag ggattattgc aacgtcttga gaaaaccaaa
      721 gaaatggcag agaaatttcc gaatgcaaaa attattttaa gtggtggacc tgttcgttat
      781 atctatgcag aagcggatgt aatgaaaaaa tggttgatag agaatggcgt tgatgaaagc
      841 agactgttgc ttgatgatgt ggcacgagat actccgggaa atgctgtcgg tatcattgat
      901 tttatgaagg aatatggagg tagaaaagta ttggggatcg gtacgatctt acatttaccg
      961 agagcaatgt ctgtattgaa aagctatgcg gattccattg gatatgaatt ggaaattgat
     1021 tctgccggag gcggttctcc tcctaatgaa aaaaataaaa aaggtgaagc tctttataca
     1081 tttgttaatg ttgctcgtgc aatggggtta tttaccttgg gcgattttga gaatttgctt
     1141 gccaaagaac aagctgaaaa agaacaaaga gaagcgttgg aaaaagcaca gcagaattat
     1201 ttagaaaaat tggtagctga gcgagatcaa gcagtaaaaa atgcagaaaa ttctgcaaat
     1261 gagctggaag tagccagaca ggcgttagaa acagcaaaac aggctcatca gcaagctgaa
     1321 gaggaattga ataaagaact tagtaaaacg caagagcagt taaaacagag tacggaagcc
     1381 cttagtcgtt taataataaa gcagaacaat cctttttccg agcattatgt tgtacagctt
     1441 aatttgatgg aacaagcaac ttatgatctg taccgtaggt tagcagaaat agaacataca
     1501 caagattgga atttatggct ttcggatagt ctatccaaat atcgtttaaa aaatcgttca
     1561 accgaagact atcacttatt acatatcggg ctagatcatc aggtttccca taattggtct
     1621 attggtggag tatttggtat cagtcagggg caaattgaga ataggacgca taaagtgaaa
     1681 gggacatctg ctggtattta tgctggttat cgtcctacaa gtggtctgtt ttggacaaat
     1741 ttttttaatt acagtcattt tactaatcaa tctggtgtaa caaaacgaga taataatgca
     1801 tacagtctga gtagtgaaat tggaagaaat atcgtgatga gtcatcaatg gcaaattacg
     1861 ccaaagctgc aattaggctg ggcaaaagct ggatcagcac gaatgttttg ggctgggaca
     1921 gggctacgtt taggaaaagt gattgaactc aatgcaatca aacttaaacc ttatgctgat
     1981 attagctatc gttttcgaaa tcgtcatatt gataccttag atagtttatc tgatcgtcat
     2041 cggaatgtaa tcagtattgg gatacaagca gttggaaatc gccattattt tgcaatcgaa
     2101 ggatcaatgt tacacgggga tgcattgaag cgttcatacg gattacacgc aaattatcac
     2161 tatcaatggt aaataggagc ctctatgaaa aaaatcaaaa caaccctttc tgcccttgct
     2221 ttaagccttt ctttgataag tgtaaatagc tgggcgatac cagctgatta tttgagccaa
     2281 gacaatatca gtcaatatga taaggcgttt aactttgtat tagcaaaagt actgcctgca
     2341 ccaaaaggta aagaagatgg tcgaggagcg ccgattgagc atttagttat tcaatatgcg
     2401 ccagactatg ttgatgaccc ttatctaaaa gaggatgtgc tgaatttccg ccgttggtat
     2461 tggcaagcga tgtatgcttc gcttgatcag aaagttaaag agaagccgac ctaccttaac
     2521 acttaccgtt tacaagcaga ggcgtatttc gtcaataaag agtatcggga agcactttct
     2581 cagctcgacc aaattttgcg ccaaaacccc cgtgatattc acgctcttgc gatgacagta
     2641 ttagcttcaa gggtgctaga agatactgaa caagaaacgg ctcgtctttc tgcactgaaa
     2701 cagcttgctc ccgaagtcgc acaacgaatg acagactttt ttgcctttac cgaacaaacg
     2761 ctggcggcaa gctacggtaa tgaaccacag acagcaatga tccctgatac gattgccgtt
     2821 tttggttcta cgccaaacaa agacggcaca ccttcgccgc tgttgttaga tcgattacag
     2881 aaaaccaaag agatggcaca aaaatttccg caagcaaaaa ttatcgtcag tggcggtgct
     2941 gtgaaaacgg aatttgctga ggctgatgtg atggcaaaat ggcttagcga aaatggtatt
     3001 gaaaaagacc gtttgctact tgatcctgtt gccagagata ccccgggaaa tgcggttggg
     3061 attatcaagc tgatgcaaac ttataatggc aagaaagtat taggtatcgg tacgttacaa
     3121 catatccctc gtgcaacagc ggttctcaaa ggttatgcac agcacattgg ttatccgatt
     3181 gagatggatt ccgttggtgg tggcaagccg gcaacaccgg gaaaagccaa aatcgaggca
     3241 ctttatactt atgtaaatgt ggcgagatca atggggttgt ttgagttggg ggattttaag
     3301 tagttacttt attgacagct gctattgata aaaatcccgc gttaagcggg atttttttat
     3361 gttctacgaa cgtttcataa tctcgaaaaa ctcttcgtta gtttttgcca tcattaattt
     3421 gtcgattagc cattcgatag catctacttc gtccattggg ttgaggactt tgcgtaacat
     3481 ccaagttttt tggagttcgt ctgctgccat taagaggtca tctttacgag tacctgagcg
     3541 gttgaagtca atagccggga agatacggcg ttcagcaata cggcgtgaga ggtgtaattc
     3601 catattaccc gtacctttga actcctcgaa aatcacttcg tccatttttg atccggtatc
     3661 cacaagtgcg gttgcgataa tggttaagct gccaccttct tccacattac gggctgcacc
     3721 gaagaaacgt tttggacgat gtaaggcgtt agcgtccaca ccaccggaaa ggattttgcc
     3781 ggaaaccggg gtaacggtgt tgtaggcacg ggctaaacga gtgatggagt ctaataaaat
     3841 caccacatct tttttatgct ctaccgagcg ttttgctttc tcgattacca tctccgcaac
     3901 ttgaacgtgg cgggttgccg gttcatcaaa ggttgaggca attacttcac cacgtacggt
     3961 gcgttgcatc tctgttactt cttccggacg ctcatcaatt aataatacga taagctcaca
     4021 ttcaggatga ttatgggtga tgctttgtgc aatattttgc agtaacacgg ttttaccagc
     4081 ttttggcggg gcaacaatta acgctcgctg acctttaccg attggggcgg ctaaatctaa
     4141 aatacgagcg gttaaatctt cttttgatcc attgccacgc tccattttta agcgagaatt
     4201 ggcgtgcaga ggggttaagt tttcaaagag aattttactg cgagaggctt ccggtttgtc
     4261 atcattaact gaatcaactt tcagtagggc aaaatagcgt tctccctctt ttggtgggcg
     4321 aattttacct tctattttat cgccagtttg taagttaaaa cggcggattt ggcttggaga
     4381 aacataaata tcatcagggc cggctaaata tgagctatct gatgagcgga ggaaaccgaa
     4441 gccgtccggt agaatttcaa gcacgccttg cccgaaaatg tcttcaccgc tttttgcgtg
     4501 ttgtttaaga atagcaaata cgatgtcttg tttacgtaaa cgagccagat tttctaagcc
     4561 catttgattt tcacccattt ccacaagctt tgaaacaggg gtgtttttaa gttgagtaag
     4621 atgcataatt tgaatgtaaa attgtgatta attaag
//
LOCUS       DANMGB010000173         4584 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.174, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000173 DANMGB010000000
VERSION     DANMGB010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4584
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.174"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            158..2092
                     /gene="iolD"
                     /locus_tag="PXG19_002214"
     CDS             158..2092
                     /gene="iolD"
                     /locus_tag="PXG19_002214"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL6067473.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            2219..3115
                     /gene="iolE"
                     /locus_tag="PXG19_002215"
     CDS             2219..3115
                     /gene="iolE"
                     /locus_tag="PXG19_002215"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL6067474.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            3117..4127
                     /gene="iolG"
                     /locus_tag="PXG19_002216"
     CDS             3117..4127
                     /gene="iolG"
                     /locus_tag="PXG19_002216"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL6067475.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
BASE COUNT         1365 a          973 c         1074 g         1172 t
ORIGIN      
        1 cactttgaaa aataaggcaa taacttcgca gaaatgagaa ctggatcaca tctttttttc
       61 gatttccttg ctattataaa tgaaataaat ttttcatttg taaaaatcag tagaaaaccg
      121 accgcttgca aaagcgatgt aagccagagg aggctttatg cagactactc gtttaacggt
      181 tgcacaggcg ttagtgcaat ttttggataa tcaatattta gacgtggacg gcaaagagat
      241 taaattcgtt cacggtgttg ccgctatttt cggccacggc aatgtgctgg gaataggtca
      301 ggcgcttgct caaaatgccg gtggtttaac gctctaccaa ggcagaaatg agcaaggtat
      361 ggcacatttg gcgatgggct ttgctaagca aaatctgcgt caaagaatta ttgcctgtac
      421 ttcctcggtc gggccggggg cggcaaatat ggttacggct gcggcaacgg caacagcgaa
      481 ccgtattcct cttcttttat taccgggcga tgtgtttgcg acccgccagc cggatccggt
      541 actgcaacaa atcgaacaac cttacgattt aagcattagc actaacgatg cgttccgtgc
      601 cgtcagtaaa tattgggata gagtgcaacg ccctgagcag ttaatgagtg cttgtatcaa
      661 tgcgtttcgt gtgctgaccg accctgctga aaccggtgct gtcaccattg ctctgccgca
      721 agatgtacaa gcggagagtt ttgatttccc gaacagcttc ctgcaaaaac gagtgcatcg
      781 cttagagcgt acaccgccga caacagcgat gattaagcaa gcggtaacat taattcaaac
      841 caagaaaaaa ccgctgattg tctgcggtgg cggtgttcgc tactcgcaag cgggtcaaat
      901 tctgcaaaaa tttgctaaac agttcggcat tccatttgct gaaacccaag cgggtaaaag
      961 tgcggtggtg tccgatcacg cattgaatgt aggcggagtg ggagaaaccg gttgtttagc
     1021 ggcaaaccgt ctggcaaaag aagcggattt agtgattggc attggtacac gctacaccga
     1081 cttcacgact tcttccaaat ggattttcca aaacccaaac gtgcagtttt tgaacattaa
     1141 tgtggcacgt tttgatgcgt acaaattaga cggcgtgcaa ctggttgccg atgcaaaaac
     1201 tgcattagag gcgttaagcc aagccattcc tactgattat caagctcaat gggagaatga
     1261 aatttcacag gcgaaagcgg attttgctga tgaaattcaa cgcctgcgcg ctgtgcaata
     1321 tcaccctgat ttcacccctg aaattaacga taatcttgat cataaagcgg ttcacaatga
     1381 atttattcag ctcaccggtt cccagctcac ccaaacccaa gtgctgggta ttgtgaatga
     1441 aaccattgat aacaatgcga ttattgttgc cgccgccgga agtttgccgg gtgatttaca
     1501 acgcacttgg ttaagtaaag gtgaagagac ttaccacctt gaatatggct actcctgtat
     1561 gggctatgaa gtgagtgcgg cagtcggcgt gaaaattgcc cgccccgaac aagaggtcta
     1621 tgccttgctg ggggacggct cttacttaat ggcacacacc gaattagtga cctcaattca
     1681 agagggcaaa aaaatcaacg tggtgctgtt cgacaatatg gcaaacggct gtatcaacaa
     1741 cctgcaaatc ggcaacggta tggacagttt cggtacggaa ttccgcttcc gcaatggcga
     1801 aactaaccaa ctcaacggcg gtttagtgcc gattgatttt gccaaaaacg ccgaagcata
     1861 cggctgcaaa acctatcggg taactaacga agccgaattg cgtgccgccc ttgatgatgc
     1921 gaaaaaacag accgtttcta ccttaatcga tattaaagtg ttgccgaaaa caatggctca
     1981 cggctatggc tgctggtggc acgttggtgt cgcggaagtg tcagagagcg agcgtattca
     2041 acaagcccgc caacgctccg aagagcagtt agctaaggct cggaagtatt agttaaaaaa
     2101 acaactcccc actttgagct acgaggggag aatatcaagc ggtcaaattt gcaaaatttt
     2161 tgataaaaat aaccgcttgc atccaaattt atctctataa atcaaacgag gtttctctat
     2221 gaaagctgaa aacattcaat taggcattgc cccaatcggt tggacgaacg atgacctgcc
     2281 ggaactggga gcggaaaaca ctttcgagca gtgtgtgagt gagatggcac ttgccggcta
     2341 cacgggctgt gaagtgggta ataaatatcc gcgtgatgtt gccgtgttaa aacacaaact
     2401 ggacgtgcgt ggcattcaaa tctgtaatgc gtggttcagc accttctttg tggacggtaa
     2461 acgggaagag accattgccg agttcatcaa acatcgtgat ttcttgcatg caatgggggc
     2521 aaaagtgatc ggctgttccg aacagagccg tagtattcaa ggcacaacca aatctgtgtt
     2581 caaagaaaaa ccgattttca acgatgaaga ttggaaacgt atggcagaag gctataacga
     2641 attggcgaaa cttgccgccg aaaaaggaat gaaagtctgc ctgcatcacc atatgggaac
     2701 cggtattcaa acacccgaag aggtcgatcg ctatatggca gaagtgaatg acgatgtcta
     2761 tctgttgttc gattcagggc atttgtacta ttccgaaggc tgccaaaaag cgatgctcgg
     2821 cgtactggaa aaatatatcg accgtattat ccacgttcac ttaaaagatg tgcgtgatga
     2881 agtcatggcg gaagtaaaag caaaagattt aagcttttta gaaggcgtga aaaaaggcac
     2941 ctttactgta ccgggcgatg gtgtcattga tttccgtccg attttcgata ttttagaaaa
     3001 acacgactac aaaggctgga tggttgtaga agccgaacaa gatccggcac ttgccaaccc
     3061 gtttgaatac gccctcaaag gcagaaaata tatccgtgaa accgcaggag tttaatatgt
     3121 taaaagtagg tattattggt gcaggccgta ttggacgtgt gcattctgaa agtattagca
     3181 aatatgtcaa aggtgctgaa atcaaagcaa tctctgatgt aaaaattacc gaagaattga
     3241 ccgcttgggc aaaatcgatg ggtattccgg aagtttatga tgactataaa aaaatcctgc
     3301 aagatccgga aattgatgct gtattggtct gctcttccac caacactcac gctccgattt
     3361 cgattgaggc agcacaggct ggcaaacacg ttttctgtga aaaaccggta gatgcagacc
     3421 cagctaaaat ccgtgaagta ttgagtgcag tcgaaaaagc cggtgtaaaa ttccaagtgg
     3481 gctttaaccg ccgcttcgac cacaacttca aggcgattaa agaccgtgtg gcggcaggcg
     3541 acatcggcga accgcacgtt atccgagtaa cctctcgtga tccggaagcc ccgccaatcg
     3601 aatatgtgaa agtctccggc ggaatgttct ttgatatgac cattcacgac ttcgatatga
     3661 ttcgttattt atccggcagc gaagtggaag aagtgtttgc agtcggcacc gtattagtaa
     3721 accctgaaat cggcaaagcg ggcgatattg atactgccgt tatcacgttg aaactgaaaa
     3781 acggagcaat cggcgtaatc gacaacagtc gcaaagctgc ctacggctac gaccaacgtg
     3841 cggaagtgtt cggctcgaaa ggggcaatcc atatcactaa tgataccggc tcaactgccg
     3901 tattctcagg tgaaaacggc gtggtggcgg aaaaaccaaa atacttcttc ttagaacgtt
     3961 atatgcaatc tttcgccgat gaaatcagct gtttcgtaga ttctgtggta aacgacaaac
     4021 caacgttagt aaacggcaat gacggcttac aaccggtact tattgcctta gctgcgaaaa
     4081 aatcactgga agaaaaccga ccagtgaaat tgagtgaagt ggcgtaattg atcataaata
     4141 caagcggtcg gttttactcg ctacactcgc acttcgtgcc atcggcatag ccgatgttca
     4201 aacgcaagca ttttgcagaa aaatttgtaa aactgaccgt ttgagttttt atttattatc
     4261 ttttgggaaa taaatataat cgtgctcaat ttttattgat tgtttaaata aatagaaggc
     4321 tggaattatc aaaagagtta atacaatacc aataaaatat ttaaaatttt ctgtttgcat
     4381 tccaatatat tcaaaagtga atctaatccc aagagggtaa ttcccccatt cttttgccaa
     4441 acagatatga ataatcaaaa agaagataat acctaaaaaa cgtcgagata ttgatattct
     4501 gactctcatt ttttcttctt ctttttcaca tagtatctca actctgcatt attttcctta
     4561 gctgcttgta tttttaatat tgaa
//
LOCUS       DANMGB010000174         4573 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.175, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000174 DANMGB010000000
VERSION     DANMGB010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.175"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..337
                     /locus_tag="PXG19_002217"
     CDS             <1..337
                     /locus_tag="PXG19_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6067476.1"
                     /translation="KKTSSITLISELIIEDQWNKNTVEIEGEWRYSQKSIDEQLKNGD
                     YYIIKSLDFRPRRVFERSAEKKKIHNLISRAHYDMATNEDSASEHLELFGEDIAEDSF
                     DYPKPEKLI"
     gene            344..415
                     /locus_tag="PXG19_002218"
                     /pseudo
     CDS             344..415
                     /locus_tag="PXG19_002218"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            425..943
                     /locus_tag="PXG19_002219"
     CDS             425..943
                     /locus_tag="PXG19_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6067477.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            959..1948
                     /locus_tag="PXG19_002220"
     CDS             959..1948
                     /locus_tag="PXG19_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6067478.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            1915..3144
                     /locus_tag="PXG19_002221"
     CDS             1915..3144
                     /locus_tag="PXG19_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067479.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(3217..4497)
                     /locus_tag="PXG19_002222"
     CDS             complement(3217..4497)
                     /locus_tag="PXG19_002222"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL6067480.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
BASE COUNT         1477 a          786 c          964 g         1346 t
ORIGIN      
        1 taaaaaaacg agttcaatta cgttgatttc ggaattaatt attgaagatc aatggaataa
       61 aaatacggta gaaattgaag gtgaatggcg gtatagccaa aaaagtattg atgagcaatt
      121 aaaaaatggt gattactata ttataaaaag tttagacttt cgaccaagga gagtatttga
      181 gcgaagtgcg gaaaagaaaa aaattcataa cttaattagc agagctcatt atgatatggc
      241 aacaaatgaa gactctgcta gtgaacatct agaattattt ggggaggata ttgcagaaga
      301 ttcatttgat tatcctaaac ctgaaaaatt aatctaattt gtattagaag catcgactga
      361 accatatgat ctcgtcctcg atagctttct tggctcaggt acaactgcag cagttgctca
      421 taaaatgaac cgtcgttata tcggtattga gattggcgaa catgctaaaa cccatgttgt
      481 cccacggttg aaaaaagtaa ttgaaggtga gcaaggcggt atttcaaaag cagtaaattg
      541 gcaaggtggt ggatcgtttc gcttttgtga gttaggcgag gaagtatttg acgcattcgg
      601 ttcacttaat ccgaacattc gttttgacga tttagccgcc catatttggt atttagaaaa
      661 tcatttccct ttgcaaaaaa acagcgaaaa atcaccgctt gtcggcactt tcaacggcaa
      721 agcctactat ttgttatata acggaatttt aggcgataaa cgtccgcaga gtggtaatgt
      781 tctgacacga aaattaatgg cggagttacc atactttgct gaatttattc aacagggaat
      841 ggatattgtg gtatatggcg aagcgtgccg tttaggagaa gtgcagttag ctgaaaagaa
      901 aattacattt aaacagattc catatgatgt aatgtctcgt taatagtagg agaaaaaaat
      961 gaaattaaaa aattaccaaa atgaggcatt aaaccgtgtc agccactatt tttcggcttg
     1021 tttgcaatct gatgcaaaaa ccgcatttag ccaaattcaa cctgaatata gttacaagat
     1081 cccaagtgaa cacagtaatt tgcgtgatgt gccttatgtt tgtgtacgaa ttccaactgg
     1141 tggcggtaaa acgttgttag cctcgcatag tattgctcgt attgcaaagc agtatttgga
     1201 ttgcgatttc ccggttacct tgtggccagt gccttctcgt acaattaaaa cccaaactac
     1261 agaagcatta aaaaatccgc aacaccctta ccgtgcagta cttgataaaa cttttaaccg
     1321 agaagtaatg gttattgagt ctgaagattt tgatttactt cgcccacaag attttggtaa
     1381 taaggcgatt gtaatcgttt ctactattca aaattttcgg gtagaaaatc aagatgggcg
     1441 aaaaatctat gcttttaatg aaaaattaac agctcatttt gagcgtttac taccccatat
     1501 tcaggcaaat ttagaaaaga tttccactac tgatctacaa gagaacggtt taacctccaa
     1561 acaaacgggc aaaattaagt gttcttttgc aaatttgttg cgagcttatc agcctttggt
     1621 cattgttgat gaagcacata atgctcggac ttcactctct tttgatgtgc tatctcaact
     1681 ttccccatca gctattttag aatttactgc tacgccaaac acagatagaa aagcaggaag
     1741 taatgtgttg tatcacgttt cggcaagcca tctaaaagca gaagagatga tcaaattgcc
     1801 tattgtgctg accgaacatc acaactggca acaagcaata gatggggctg taatcaatag
     1861 aggagcatta gcacaaaaag cacagtatga gagcgagtac gttcgtccga tttattgttt
     1921 caagctgagc cgaaaaacgg caaagtaaca gtagaagtct taaaacagta tttaattgat
     1981 gagttaaaaa ttgatgaaga agagattgcc attgtgatag gtaatcaaca cgaattagat
     2041 aatatcgatt tatttaatcc acaatgcaag atcaattaca tcatcacggt tgaggcatta
     2101 aaagaagggt gggattgccc ttttgcttat attttttgct cagtacaaaa tgtttcctct
     2161 agcaaggaag cggagcagct attagggcga gtattgcgaa tgccttatgc taaacaccgt
     2221 caaattgaag atttaaatcg tgcttatgct ccgctttcct ctaagtcgtt cggcgaaacg
     2281 gctcgtaatt tacaagataa attgattgga atggggtttg aagcattaga agtagctgaa
     2341 atgcttcgta tcccacaaca agaaaattgg attggaaacg aaggagattt attctataca
     2401 ccgacaacag ttttagcatt aacgcaactc cctgaaatgt ctgatttaag cgaagcaaaa
     2461 cgttctcaac ttaaaattac cgagcaagaa ggtcacattt tagtgcaagt aaaaggtaat
     2521 ttaagtgaaa agttagaaaa agcgttgatt cgaactgcaa caggtaagaa aaaagagcaa
     2581 attgagcaac agttacaaat tcaccagaat agagttgaaa tattatcttc tcctgccgaa
     2641 aaaggggaaa tatttaaagt aatacctcaa ctgtgtatga atattcaagg cgaattcgac
     2701 ttagctgatt cacaagtgct attagattac caaagttgga atttattgga ttatccagcc
     2761 aaacttgatg gatttagatt acaagaaaat agccaaagtt ttgaaattga tgtggaagat
     2821 aaacgggttt cttaccattt taatcagcag caactgagtt tttctgatga ttggttaaga
     2881 aatcctgtaa aaagagggtt ttctttacca ttagctcatc agaattttta ccctgatttt
     2941 attgtagagc ttattgatgg tcgaatttta attgtggaat ataaagggga acaattaaaa
     3001 agtaatgaag attctaaaga aaaagcctta attggcaatc tttgggagaa attaagtcaa
     3061 ggaaaaggct tatttattat ggctgtaaaa agcgatgaaa atggtcaaga tgttagaaca
     3121 caactgctaa ataaattagc ctgatttgca aattttatgc aaaatataac cgcttgtgga
     3181 aacaagcggt taaaattttt cgattttttg ccaatcttat gatttatcca ttggctcaaa
     3241 atcacgttta gtatgtccgg tgtagatttg acgtggacga acgattttga tattgccttg
     3301 gagatacatc tctttccagt gagcaatcca gccaacggtt ctggctaggg caaacattac
     3361 ggtaaacatt gaggttggaa taccgatggc ttttagcacg attccggagt agaaatctac
     3421 gtttggataa agtttatgct caatgaaata agggtcgctt aacgcaatac gttctaattc
     3481 caatgccact tcaaatagtg ggttatcaat gttcagttct tttaacactt cgtggcaggt
     3541 ttcacgcatt actttcgcac gagggtcgta gtttttatag acacgatgcc caaagcccat
     3601 taagcggaac gggtcatttt tatctttggc tcgagcaata aattcaggaa tgcgatccac
     3661 agtgccgatt tctttcaaca tattgataca ggcttcattt gctcctccgt gtgcaggtcc
     3721 ccagagagag gcaataccgg cagcaatgca agcaaatggg tttgcacctg atgaagcggc
     3781 ggttcgcacg gttgaggtcg aagcgttttg ttcgtggtct gcatgtaaaa tgaaaattcg
     3841 gtctaacgca cgctctaaca cagggttcac ttcgtacggt tcacaaggag tggcaaacat
     3901 catatataag aagttgccgg cgtaagataa gtggttttgt gggaacataa acggctgacc
     3961 gatagagtat ttataacaca tcgccgcaag ggttgggatt ttggctaaca aacgaatggc
     4021 ggttaattca cggtgggctt ggttgtttac atcaatggcg tcgtggtaga aggcagccaa
     4081 agctccactt accccacaca tcaccgccat tgggtgcgaa tctcggcgga aaccggagaa
     4141 gaatttggtt agttgttcgt gtacaagagt gtgttttttg atgagttgaa cgaagtcttt
     4201 gtattcttct ttggtagggc gttcgccgaa taacagcata taaccgactt ctaagtaatc
     4261 agaatgtttg gctaattggt caatcgggta gcctcgatag agtaaaaccc cttcatcgcc
     4321 atcaacataa gtgatattgg atcggcatac agcggtcgaa accaatccgg gatcataagc
     4381 aaataactta tgctttaaga aaggctgaat atcaatcgtt tgatacccta aggttccttt
     4441 ttgcatattg agttcaagtt tttcacctgt ttcgagtgtt aatgttgctt ttgacatagc
     4501 ttactcctat ttatttgaga tttataagat aaactagatg atttccaaaa gaatcacaac
     4561 gattttttac att
//
LOCUS       DANMGB010000175         4556 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.176, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000175 DANMGB010000000
VERSION     DANMGB010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.176"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            138..728
                     /locus_tag="PXG19_002223"
     CDS             138..728
                     /locus_tag="PXG19_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067481.1"
                     /translation="MTTQITTAQINDLLKSHDIQGYANEWQGRRIYINLSAKNNESKG
                     DRNYQLYIDLATGELVSKLGKGLTTRAFDAAVKAFENAFNAKDTAENTAPVESKETEQ
                     ENKQETTKLVITKPTLKGSEKQIDSANEIINLFIAKIGDTSIPVTATQEQITQAQAMV
                     DNFFAMTNAGKWIEKFKGLNDNSEPKQFWLSVKYGW"
     gene            798..1316
                     /locus_tag="PXG19_002224"
     CDS             798..1316
                     /locus_tag="PXG19_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067482.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARRVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(1463..1774)
                     /locus_tag="PXG19_002225"
     CDS             complement(1463..1774)
                     /locus_tag="PXG19_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067483.1"
                     /translation="MTKIKHKHPLAEAFYQLGKDVGEINRRLVVVDEQSLKLQELKQT
                     INEQTEQIKTLGTVVNKLIDALQQSQSLNVRSESAVAATENQDHLNDGVQYQGPGRAR
                     A"
     gene            complement(1767..1916)
                     /locus_tag="PXG19_002226"
     CDS             complement(1767..1916)
                     /locus_tag="PXG19_002226"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067484.1"
                     /translation="MDNILITIHPTETIDITIDKLVVIHIGEEYGDTPDFLTIYQQAK
                     ELNDD"
     gene            complement(2150..2443)
                     /locus_tag="PXG19_002227"
     CDS             complement(2150..2443)
                     /locus_tag="PXG19_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067485.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
     gene            complement(2566..>4556)
                     /locus_tag="PXG19_002228"
     CDS             complement(2566..>4556)
                     /locus_tag="PXG19_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL6067486.1"
                     /translation="FTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTP
                     APEDVDSAVSAVSAKIDTIQETLANADSALSSRIDAVTASVGSNLAKITQVSNAVAGV
                     DGKLSATHTIKTETIAGGRKAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQP
                     VRLFGVAQNKVAINGNLIATGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKL
                     AIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRNIFNRNEQDNYGLKNG
                     GLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIEN
                     IEKPGGAYLGWIGDSEVITGYSANQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGK
                     ANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITA
                     NEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTI
                     TGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGK
                     LKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEAN
                     QSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS"
BASE COUNT         1350 a          953 c          883 g         1370 t
ORIGIN      
        1 ggggtaaaat aaatttttta aaaatttgca aaaaaattta aaaaaactct tgcaataaaa
       61 ttattatgcg cctataatta ggctcataaa gcaaggctag ggagccagct aataaccatc
      121 agccaaaggg ggctaaaatg acaactcaaa ttacaaccgc acaaatcaac gacttattaa
      181 aatctcacga tatccaaggc tacgccaacg aatggcaagg tcgccgcatt tacattaacc
      241 tttcagcaaa aaataacgaa agcaaaggtg atcggaatta ccagttgtac attgacctag
      301 ccacaggcga gttagtgagc aaacttggca aaggattaac aaccagagcg tttgatgctg
      361 ccgtaaaagc ttttgaaaac gcttttaatg ctaaagacac cgctgaaaat acagcgccgg
      421 tagaaagcaa agaaacagag caagagaaca aacaagaaac aactaagctt gtaatcacaa
      481 aaccaacatt aaaaggctct gaaaaacaaa ttgattcggc aaacgaaatc atcaatcttt
      541 ttattgcgaa gattggtgat acctctatcc cagtaacagc aacgcaagaa caaattactc
      601 aagctcaagc aatggtagat aatttttttg caatgacaaa cgctggaaag tggatcgaaa
      661 aatttaaagg tctaaatgat aatagcgaac caaagcaatt ttggttatcc gtaaaatatg
      721 gatggtagat tgagataaca aataagccgt aagagcaaag gcttacggct aaaacaaaca
      781 gataactgga gattattatg actacacaag taacaccaca aattatgcgc attatcgggc
      841 aaattgtcgc tgctacttat ggtgacgatg tgccaacaaa cgtacagaca ataatcttga
      901 gataccctat aagaggcata gggtttatct ctagtcgcag agagctatct attaacaatg
      961 gagagatagc aagattaatg gataaaatac caggcgacct cgaggaccct aaagacggga
     1021 tgccttttga ttgtcagggg gcgttttggc ttggatacta tcaatactgc aaattaagta
     1081 acgatgtaaa aaattacaca tcaaaagagc tatccatcat tggcgagtca ttgtatggca
     1141 ctcaatggca gtctaatcta gcgagagatt tgagattatc tgatgctcgc cgtgtccgcg
     1201 aatgggtggc tggtgaacgt aaaatccctt tcggggtttg ggctgatttg accgaattgg
     1261 ttaaagccaa aaaagctaac ttatcatcaa ttcttaaaaa attaacaata gattagcact
     1321 gattttaaag cccctctcgg ggcttaatta tagaaaataa aatcacaatg gctaattttg
     1381 ccaaatttgc ctgttaaaac gtgcgaaaaa ttacaaaaaa cggctagagc tatagccgtt
     1441 ttgagtgcag atgttaacag agttaagctc tagcacgtcc tgggccttga tactgcacac
     1501 catcatttaa atgatcttga ttttcggttg ctgctacagc agattctgat cttacattta
     1561 aactttgtga ctgttgtaat gcatcaataa gtttatttac cactgttccg agtgttttaa
     1621 tttgctcggt ttgctcatta atagtctgct ttaactcttg cagttttaat gattgctcat
     1681 ccacaaccac taatcgacgg ttaatctctc ctacgtcttt acctaattga taaaatgctt
     1741 ctgcaagtgg gtgtttgtgt ttaattttag tcatcgttaa gctcctttgc ttgttggtat
     1801 atagttaaaa agtcaggtgt gtcaccatac tcctcaccta tatggataac taccagtttg
     1861 tctatggtga tatcaatagt ttcggttgga tgtatagtga ttaagatatt gtccatattc
     1921 ccgccttaaa tttgggtttg gtcagggata agttggatcg tgccgtagta ctgccatttt
     1981 gggtggatag ctcaatttga ggctctgtgc tgccctctac tatggcgtgt aaatccagcc
     2041 taataccctc taaatttaca ggctcgccat ttgtttgcct aaaaaaaaag gcgataactt
     2101 acgtcatcgc ctctgaaaaa cttaaattta tgcttttgca tttagacccc tacactacaa
     2161 tctgaccggt ttctttgagg tggttgtaga tacgtcctaa cataatctgc gttggcgttt
     2221 tgccaatatc ctcttttgtt agcggtgcat cagtaatcgc cttggcggac tgtgcatcaa
     2281 tgtatttgta ctcacttgtg atgattacaa agtttgttac ttctccatcg gtatcatcgc
     2341 ctgtaccgac cacatattta gcattgagcg agccgtcatc ttgcgttgag tagcttgcga
     2401 tggtggaata cattgggttt aagattttgt taaaagttgt cataattttt ccttttatcg
     2461 atagttgaaa taaaaacaat cgcctgaatt gacctgcaag cggttggttt tggatattta
     2521 aaaaagctgt ggctatccgc actcagtact acattgaggc gataactaac tgatagagat
     2581 atatttagcc gtcgaaatgg aataggctaa aacaataaaa tctaaagagc taccacttgc
     2641 atttctattt aatgatttct ctattgtttt tgtgattgat tgatttgctt ctaaaatgaa
     2701 tgactcactt ccgatgattt caatatacct ccttgtcggc gctgcattta tggtgacagt
     2761 tgctttatag atatattcgt gtctataaat tggagaggag gagttttctc catgttcttg
     2821 cccctcataa atgcgattac gatgtgaata ttttaatttg cctgtaacct gctctataac
     2881 acctccccct attaattgag atacttcaag ttcgccggta aatttgccag tagccccctc
     2941 caatcttgca ccctttattg tgccgccaga gatagttgta ccgctaattg ttgtaccatt
     3001 aatacttccg ccactaattg tattaccagt aattgtcgta cctgtaattg taccagcagt
     3061 taccttacca agatttgccg atattgccgc taaattgttt acatttagct tatccgcagt
     3121 gatcgaactc cccacaatat gacttgcatt aatcgagttt gctgccatat ttcgagctgc
     3181 aatcgtgccg gttgcgattt cgttggcggt aatggtattt gctgcaattt gttgagcagt
     3241 aacggtatta gtaactattg atccaccgtg gatagcggtt acaccggcat tttgccaagg
     3301 gctaggctga gtgatatctg taacattatc actagcctcc tcaagcattg gcctacgagc
     3361 aaataaaaat ggattagctt taccttgaat attatctaat cgtaatgcga aacgaataca
     3421 gcctgaagta ggtgcagtaa atacaacctt aacccgtttc atatttttaa attcgccttg
     3481 attagcacta tagccagtaa ttacctcgct gtcgcctatc caacctaagt aagcaccacc
     3541 aggtttttcg atattctcaa tgactaattt agcttgccca cgatgacaag ctaaccatac
     3601 ggaggcaata tattttttat taggcacaac attaatatcc tgagataacc acccaattcg
     3661 cccagtatca gaggtttcct ttgtagtgct ataccgcatc gaaaatacta actcatttgg
     3721 tagtcctcca ttttttagtc cgtaattatc ttgttcattc ctattgaaaa tattacgggt
     3781 gtcaatattt agccgatcac caacttctcc tcgccagtag ttccagccaa acggagctat
     3841 tgacaaatcg ggtgttgcaa aaataggatt aaccagcaaa ttcccaccta gcccaatcgc
     3901 taacttatcc gccgatattt gccctgctgc caggtgttcc gtacggatag ctcccgccgt
     3961 caatattccg gctcttactg agtctgcatc aatgtggcta cctttaattg tacctgttgc
     4021 aattaaattc ccattaatcg caactttatt ttgagccaca ccaaacaatc gtaccggttg
     4081 gccgtcttga gcatttttta ctacctcaaa tttgtctgcc attacaatga cagaggattc
     4141 tgcattgcga ttgtctgccg cggcaccaag tgcgataccg gcaatcgctt tacgtccacc
     4201 ggcaatggtt tcggttttga tggtatgggt agcagataat ttgccgtcca caccggctac
     4261 agcattactc acttgagtaa tttttgccaa gtttgagcca acagaagcag taacggcatc
     4321 aatacgagag cttaatgcag agtcggcatt cgctaaagtc tcctgaatag tatcaatttt
     4381 agccgaaaca gcactaaccg cactgtccac atcttcaggt gctggcgtcc agtctgtggc
     4441 tacgttgcct ttttcaagtt tgacgctgtg aaacgctaac caatctgtgg tctcataagt
     4501 accatttaca ccaacaagca gataggctcg ctcacttgtc cattcggcag taaagg
//
LOCUS       DANMGB010000176         4514 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.177, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000176 DANMGB010000000
VERSION     DANMGB010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.177"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            86..3982
                     /gene="purL"
                     /locus_tag="PXG19_002229"
                     /gene_synonym="purI"
     CDS             86..3982
                     /gene="purL"
                     /locus_tag="PXG19_002229"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL6067487.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4337..4514
                     /locus_tag="PXG19_002230"
                     /pseudo
     CDS             4337..4514
                     /locus_tag="PXG19_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1259 a         1027 c         1118 g         1110 t
ORIGIN      
        1 gcaaacgtct gacaaatata gcaatcgttt gcgcaatcgt ttataatcgg tttagttttt
       61 catcttaaat aggaaaatcc aaagaatgac aatccaaacc ttccgtggct cgcctgcctt
      121 atctgctttt cgcattcaac aacttctgca aaaattccaa caaaatcaat tacctgtaaa
      181 atcagtttat gcggagtttt tgcattttgt ggcattaaat cgaccgcttg tagccgatga
      241 agaaaacaaa atcaaagagt tattgcacta cggtccaacg ctggaagaag acgagccgac
      301 agggttttgc ctgattgtta cccctcgtat cggcacgatt tcctcgtggt cgtctaaggc
      361 aaccgacatc gcccataact gcggtttggc agcagtagag cgaattgagc gtggcacggc
      421 atattattta gaattttctg aaacgccgaa cgaaagtcaa cttacgacgt tgaaaggctt
      481 attacacgac cgtatgatgg aaacggtgct ggataacgaa agccaagccg aacagctttt
      541 cgctcagcaa gagccgaagc cgtttacttc ggtggatatt ttaggcggtg gtcgcaaggc
      601 actggaagaa gcgaatatca acttaggttt agcgttggcg gacgatgaaa ttgattactt
      661 ggtggaaaac tttacccaac ttgggcgtaa ccccaatgat attgaactct atatgttcgc
      721 ccaagccaac tcggagcatt gccgccacaa aatttttaat gcggattgga cgattgatgg
      781 ggtaaaacag gaaaaatccc tgtttaagat gattaaaaac acctttgaga aaaccccgga
      841 ctatgtgctt tccgcctaca aagacaatgc ggcggtgatg gagggctcaa cggttgggcg
      901 tttcttcccc gaccaagatg gacaatatcg ctatcatcaa gaagatgctc atattttaat
      961 gaaagtagaa actcacaacc acccaaccgc catctcgcca ttcccgggag cggcgaccgg
     1021 ttcgggcggt gaaattcgtg atgaaggggc gacagggcgt ggggcgaaac cgaaagcggg
     1081 cttgacgggt ttttcggtct ctaacttagt gatcccaaaa tttgaacagc cgtgggaaaa
     1141 cccgctttcc aagccgaatc gcattgcctc cgcactggat attatgattg atggcccact
     1201 aggcggagcg gcatttaaca atgaatttgg tcgtcctgcg ttattgggct acttccgtac
     1261 ttacgaagaa aaagtgaaca gcttcgcagg cgaagaaatt cgtggctatc acaagccgat
     1321 tatgttagca ggcggtatcg gcaacattcg tgccgaacac gttcaaaaag gcgaaatccc
     1381 ggtgggagcg aagttgatcg tgcttggtgg cccggcaatg aacatcggct taggcggtgg
     1441 ggcggcatcg tcaatggcat cggggaaatc gaaagaagat ttggattttg cctcggttca
     1501 gcgggaaaac cctgaaatgg aacgccgttg ccaagaggtg atcgaccgtt gctggcagat
     1561 gggggcggag aacccaattt tatttattca cgacgtgggg gctggcggtt tatcaaatgc
     1621 gatgcctgaa ttggttcacg acggcgaatg tggcggtaag tttgatttgc gtaacatctt
     1681 gtgcgatgaa aaaggaatgt cgccacttga aatttggtgt aacgaatcgc aagagcgtta
     1741 tgtgcttgcc gtttcccctg aaaaactcga cattttcaca gcattgtgcg aaagggaaag
     1801 agccccattt gcggtgattg gcgaggcaac gaaagagaag catttaaccc ttgctgaccc
     1861 tcattttgac aataaaccga ttgatttgcc gatgaatgtg ttgctcggca aaacgccaaa
     1921 aatgcagcga gatgttttgt caaaaactgt gaaaaatcca ccgcttgcaa ccgctgacat
     1981 cgacttgaaa gaggcgttcc accgtgtgct acgcttgcct gcggtggctg aaaaaacctt
     2041 cctgattacc atcggcgatc gctcagtaac gggaatggtg gcacaagatc agatggtcgg
     2101 cccgtggcaa attcctgtgg cagattgtgc cgtaaccacc gcttcattag acagctatca
     2161 cggtgaagca atgtcaattg gcgagcgatc acctgttgct ttgcttgact ttgctgcctc
     2221 agctcgcctc gccgtggcag aaagcatcac caatattgcc gccactaaca ttggcgacat
     2281 caaacgcatt aaactctcgg cgaattggat gtcggcggca gggcacgagg gcgaagacgc
     2341 agggctttac gaggcagtaa aagcggtggg cgaagagctt tgccctgaat taggcataac
     2401 cattccggta ggcaaagact caatgtcgat gaaaaccact tgggaggaaa acggcgaaca
     2461 gaaatctgtt actgctccgc tttcgctcgt gatttccgct ttcgctcgtg tggaagatgt
     2521 gcgtaaaacc gttaccccac aacttcgcac cgacaaaggc gatacccgct tgttgctgat
     2581 cgacctgggc gaaggcaaca accgcttggg tgcaaccgca cttgctcaag tttacaaaca
     2641 acttggcgac aaacctgccg atgtggtgaa tgtggctcgc ttaaaaggct tcttcaacgc
     2701 aatgcaaacc cttgtcgcac aaggaaaatt gcttgcctac cacgaccgct cggacggtgg
     2761 tttaatcacc acactggcgg aaatggcgtt tgcagggaat tgcggaattt cggtggaaat
     2821 cgaccgcttg gtggacgatt tagccgtgtt attcaacgaa gaactggggg cagtaatcca
     2881 agttcgcacc gaagaattga gcgaggtgca agcggtgtta aatgccgaaa atcttgcaaa
     2941 tctcaccttt gatattggta cagcggttga aagcgacagc tttgaaatta cccgcaacgg
     3001 cacaacagta tttagccaaa aacgttccga actgcgtggc atttgggcgg aactcactca
     3061 tcaaatgcag cgtttgcgag acaaccctga atgtgcagac caagaatttg cagcgaaaaa
     3121 agacccgaat aacaaaggct tatccgcatt tttaacttac gatgtgaacg aagacatcgc
     3181 cgccccatac atcaacaaag gcgtaaaacc gagtgtggcg attttgcgtg agcaaggtgt
     3241 aaacagccac tacgaaatgg cagccgtctt tgaccgtgcc ggtttcaacg ccattgacgt
     3301 gcatatgtca gacttgattt caggcagacg caacctcaac gacttcaacg caatggtggc
     3361 gtgcggaggc ttctcttacg gcgatgtctt aggtgcaggc ggcggctggg cgaaatcgat
     3421 tctgttcaac ccaatgctgc gtgaccaatt cagcaaattc ttcgccaacc cgaacacgct
     3481 ggcattaggg gtatgtaatg gttgccaaat ggtctccaat ctagcggaaa ttattccagg
     3541 cacagaaaac tggccacgct tcgtgcgtaa taaatccgaa cgttttgaag cccgtgctgc
     3601 aatggtgaaa atcaacgaca ccaactcact ttggttcaac ggaatggcag gcagccatat
     3661 gccgattgcg gtttcacacg gtgaaggaca agttgagttc aaaaatccac agcaattagc
     3721 gaacttgcaa cagcaaaatc tcgtgatcgc acaatatgtg gatagccacc tcaacccaac
     3781 cgaacaatac ccagccaacc cgaacggatc ggcgttgggt atcaccgcta tcggtaatac
     3841 agacggacga gtcgctatta tgatgccaca ccctgaacgt gtgttccgtg cggtcagtaa
     3901 ctcttggtgc ccagaagatt ggacggaagg tggagcgtgg atgcggttgt ttagaaatgc
     3961 gagagtggcg ttgaagtatt aaaaatctac cttcgtagtg atctgccccc atagggggcg
     4021 attaaaattc gaattcatag aacccgaatt tttatatatc tgataaacga agttgtttat
     4081 ccttcgtgct tttcctgata tttcaagtac tttcttatca tttctgcatt gacatctacg
     4141 gtgtctacgc agtagcctct tgccacaaaa gtgggttgcc ccacaattta tgcttacgta
     4201 aatagggaaa cttattgaaa aatcttattg gaccctgttc acccttttaa atgccccatt
     4261 acgtcttata cagaaaatga acgtgattta tttgaacggt caattctacc ttaatagaaa
     4321 gtggttttta gttagcaatc aaaatcacat taacggaatt gagaatttgg agagtcaggc
     4381 aaaatgctat ttgcgtaaat ttaacggcgt tcctaaagta catgaattct atttgaaaga
     4441 atgcagatgg cgttttaatc acagtaactt aaaatatcaa gttttctttt taaaacaatt
     4501 ggttaaattg agtt
//
LOCUS       DANMGB010000177         4381 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.178, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000177 DANMGB010000000
VERSION     DANMGB010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.178"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..861
                     /locus_tag="PXG19_002231"
     CDS             <1..861
                     /locus_tag="PXG19_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067488.1"
                     /translation="AKNAIINSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKY
                     GSFDNPSLFIDNINFINNILEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLA
                     RNNPCLNLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQE
                     WQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNLYQLRLLIN
                     NEEKERLINQSVSPKNSKSNTNGMTTINFDTVVDLKVGDIVDLQYKTTHELTLLSDSF
                     LSQIYVTQEF"
     gene            1091..1273
                     /locus_tag="PXG19_002232"
     CDS             1091..1273
                     /locus_tag="PXG19_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067489.1"
                     /translation="MESHKTGNIITEQASKQASKQASKQASKQASKQASKQSVAQFKQ
                     APLPFTGQKRMFLKHF"
     gene            complement(1456..3051)
                     /locus_tag="PXG19_002233"
     CDS             complement(1456..3051)
                     /locus_tag="PXG19_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6067490.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            3200..3640
                     /gene="mioC"
                     /locus_tag="PXG19_002234"
     CDS             3200..3640
                     /gene="mioC"
                     /locus_tag="PXG19_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL6067491.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            3652..3819
                     /locus_tag="PXG19_002235"
     CDS             3652..3819
                     /locus_tag="PXG19_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL6067492.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(3908..4381)
                     /gene="asnC"
                     /locus_tag="PXG19_002236"
     CDS             complement(3908..4381)
                     /gene="asnC"
                     /locus_tag="PXG19_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL6067493.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVE
                     AYYTTGNYSIFIKVMTHTIEELHSVLAGKIQSIDEIQSTETLISLQNPISRDILP"
BASE COUNT         1368 a          853 c          865 g         1295 t
ORIGIN      
        1 gctaaaaatg ccattatcaa cagcaacctc tgccgtcgct tgcgtgtcac atcaggtaat
       61 ccgactgaca caggcagcaa caatgtagaa ttttcaaata atcaagcaaa atctattgca
      121 atatcgaaat atggttcttt cgataatcct tcattgttta ttgataatat caattttatt
      181 aataacattt tggagcccag tgaatttaat caagatgtgt atattgacgg gacaatttta
      241 aaacagtgcc aatttattaa taatcgttgt attagcaagt ctaagcaata ttctgtcaga
      301 cttgctcgca ataatccgtg cttaaattta acatttaaga gtaataaatt atcggacaat
      361 cctgcgatta tatcaggtaa gcaaggtgtt attttctgcg atgatttgag cttaggagta
      421 aataagcaca gattaagatt gcgattttca tcgccgatta attttactgt taatcaagaa
      481 tggcaaaaaa tgccgtttga cagagtgtta aatgatatca atggtcatgt tgatattgtc
      541 agtggtcaat ttattgcaag gacaggcggc acttttcatt taaaaggtaa aataacggtt
      601 acaaattcat cggaagatgt gctgaattta tatcaactca ggctgttaat aaataacgaa
      661 gagaaagaaa gactgattaa tcaaagtgtt tcacctaaaa acagcaaatc aaatacaaat
      721 ggtatgacaa caatcaattt tgatactgta gttgatttaa aagtaggtga cattgttgat
      781 ttgcagtata aaacaacgca tgagttgaca ttactgtcag actcattttt atctcaaatt
      841 tatgtgactc aggagtttta agtgactaaa aaacactact gcacaggctg gcgtaatgcg
      901 ccagccaata tcaatagttg ctgtcatcag catgaccgag actacggtat caagggcaca
      961 gtcagccgag ccgaagccga caagcggtta agacattgct taatttcgca agggaatccg
     1021 attaaggcgt gggtgttttg ggttgtggtg aggttgtttg ggtggattta ttacaaggag
     1081 aaaaatatca atggaaagtc ataaaacagg aaatatcatt actgagcaag caagcaagca
     1141 agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca
     1201 aagtgtagct caatttaaac aagctccgct accttttaca ggtcaaaagc ggatgttttt
     1261 aaaacacttt taatgatgat ttaaagggcg tttgttttca gtttattttg cataactttt
     1321 gtgattacgg ctatgcaaaa tgatttgcaa aactatgcaa aataaatcga ccgcttacaa
     1381 ttctaaaaga aaagcagtct attctctacc acattttgca aaaaagtggc aaaaatagac
     1441 cgcttgtatg gcatatcact ccgataaact caccccataa aatggcgtgt agccaaacgg
     1501 attttgcaca aaaccttgca cccgtttgct gagtggtaca taattgatag cgtgagccag
     1561 cggaataaat ggcgtttgtt cgttggcaat ttccaccgct tgttgataga gcttcgcccg
     1621 ctcgtcacgg ttttgggttt gtacagcttg agctaataac tgctcaaatt tctcatccgt
     1681 ccaacgccca taatttgttc ccggaatatt agatttgctt aataaaggga agaggaaatt
     1741 atcaggatca ccattacggc ttgtccaacc ataagtgccg gtagagaact cgccttcacg
     1801 ggtgcgtttg ttaaaatccg cccattcgtg ggtcactaat ttcgctttca ccccgatttt
     1861 cgcccaatcc gcctgaataa tttcagccgt tcgacgtggg tttgggttag aagggcgcac
     1921 taccggttgt acccaaattt ccgtttcaaa tccatcggca aagccggctt ctgttaatag
     1981 ggctttggct ttttcaaggt taaattcata ttgcggtaaa tttggattat agcccaacac
     2041 cgaatcaggg aacggattac ttgccaccgt gccaccgcct tgataaacag cctcgacaat
     2101 cgctttctta tcggttgcat aatgcaaggc ttggcgaact ttggcgttat ttaatgccgg
     2161 tttggtgctg tttaagccga tataagctaa attcagcccg tctctctgta acaaattcac
     2221 cttcggatct tgtttcattt gggcaatatc ggaaatattc gggaaatcaa tcacatcgca
     2281 ttcacccgct ttcagtttgg cataacgagt gcccgcatca ggggtaatac taaaaatcag
     2341 tttctcaaat tttgctttac cttggaaata atccgggttc gcaacataac gcaccgcttg
     2401 atcggtttga taggcttgga acacaaaagg ccctgtgccg atcggggctt gatccaataa
     2461 ctccggcttg ccttccgcca gcaatttatc cgcatattct tttgaataaa tcgacaagaa
     2521 atccatcgct aaggttgtca gaaaaggagc attaggttgc tgtaaggtga ttttaacagt
     2581 gtaatcgtcc actttttcca ctgtttttaa aatcttcggc aaattcatcc aatggtaata
     2641 gaaataagta ccgtcagaga ccttatggta agggtggttt aaatccatct ggcgttggaa
     2701 cgagaacact acatcatccg cattcagcgt tcgagttggc gtaaattgtt tattggaatg
     2761 aaatttcacg tctttacgta aatggaatgt gtaacttaag ccatcgtcac tgatttccca
     2821 acgttccgcc aaactcggct caaccgttag ttcaccggct ttaaacgcta ataagcgatt
     2881 ataaatttgt tgtgaactgg cgttgaaatc attggcatca ttagtaattg caggactaag
     2941 tttcatcggt ggagttgcca cgcaattaat caacgtattt accggagctg ctgccaccaa
     3001 actgctggca cttaagagta aaacagaaag agataattga gaaagacgca taaagactcc
     3061 ttaacatttt ctactaactt actcggcatt aacgtatttt caaaataact aaaggttata
     3121 atttataatc agaataatca gttgcaaacc aatgattctt ggctagaata ttggcagttt
     3181 tttaaacgag agatttacta tgacatcaat ttgtatcatc accggcagca ccttaggcgg
     3241 tgcggaatat gttgccgatc acattaatga ggtattaagc gaacaaggtt ttgaagtgga
     3301 actgtttaac caagccaccc ttgccgatat tgagggcaaa accaatctga ttatcgttac
     3361 ctctacccac ggagccggcg agttacccga aaatatccaa cagctatttg acgatttagc
     3421 aaatagctcg gctgatttca gcagtatgaa atttggtgta atcggtttag gtagctccga
     3481 ctatgacacc ttctgcaatg cagtaaatat tgttgaagaa gctctcaaag cgaaaggggc
     3541 aagccaagtt tgcgaatcac tgagaattga tgtaatgaat aatttcgacc acgatggcag
     3601 tgctgaagaa tggttaccat catttgttga acaattataa cttaagtatc aatgaacaaa
     3661 atcagtgcaa ataaggcaaa gtggattaaa atcgctatta tcttaatcta tatgttcagc
     3721 cctgtagata ttctacccga agcgatttta ggcccattcg gtttggttga tgatgccgcc
     3781 gcattaatgc tattgattaa gactattttg gaaaaatagg catagtagac aaaatagttg
     3841 caaaaaacca aaacaaaacg accgcttgta acccaataca agtggtctta tcttttactt
     3901 aattctttta agggagaata tctcttgaaa taggattttg aagtgaaata agcgtttctg
     3961 ttgactgaat ttcatcaata gactgaattt ttcctgctaa taccgaatgc aactcttcga
     4021 tggtatgggt cattacttta ataaaaatag aataattacc agtggtatag tacgcctcaa
     4081 caacttcatt aaattcacta agtttagcaa ttactttatc ataatctttg gctgatttta
     4141 aaataatgcc aataaagcaa cacacgtcat acccaacctt acgctcgtcc actacgattt
     4201 tggtagattc aataatgccg gcttggcgca ttttttcaac acggacatgg atagttgcgg
     4261 cactcacacc aaaaactttt gccatttccg cataaggcgt gcgagcatct ttaattagcc
     4321 aacgtaaaat tttttgatcc agcttatcaa tttccgattt agtcgtgttt ttactgtaca
     4381 t
//
LOCUS       DANMGB010000178         4313 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.179, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000178 DANMGB010000000
VERSION     DANMGB010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4313
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.179"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(39..656)
                     /locus_tag="PXG19_002237"
     CDS             complement(39..656)
                     /locus_tag="PXG19_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL6067494.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(669..860)
                     /locus_tag="PXG19_002238"
     CDS             complement(669..860)
                     /locus_tag="PXG19_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067495.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(863..1183)
                     /locus_tag="PXG19_002239"
     CDS             complement(863..1183)
                     /locus_tag="PXG19_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067496.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(1194..2075)
                     /locus_tag="PXG19_002240"
     CDS             complement(1194..2075)
                     /locus_tag="PXG19_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6067497.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(2079..4016)
                     /locus_tag="PXG19_002241"
     CDS             complement(2079..4016)
                     /locus_tag="PXG19_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6067498.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(4031..4258)
                     /locus_tag="PXG19_002242"
     CDS             complement(4031..4258)
                     /locus_tag="PXG19_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067499.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
BASE COUNT          994 a         1157 c          803 g         1359 t
ORIGIN      
        1 gtttatccgt ataattaaca ttaaaagtaa taaacattct aaacccccgc catatctaaa
       61 ctaatcggct gatactttcc gttttcatca cgtttataaa aacggatata acctttacta
      121 ccgatcactt gtacgctatc tgaaatcgct gtcattgctt gattccatct tgcatcatca
      181 atctcaacac ggcggagaga gagaattttt gctgtagata aattaccttc cttatccacc
      241 tcaaacgcat tatcaattaa ggctttaagc tccggttttg ccccttccga ccaatcgtgc
      301 aagcattcat caatcaaggc ttttgctgcg tgaatacgct catcaaagcg aatattctct
      361 tgcactgcta actgcaactt atattcaccg tcataagtaa atagtgtgat attgcctttt
      421 gcaccgccaa tttttactcc atatttgtca gccgataggc tgacaaaagc ccccacgtca
      481 tcaaatacgg attgtttaaa atcacctaac gctttgctta acgcttgtgc tttgcttaca
      541 aattggcgaa ctaattcatc acgttctttg tcgatttctt ttactaatgc ctccggcttt
      601 aaattgccat cagcatcttt ccagtaaatt tcattaccga ttgttacttt actcataata
      661 cttcctctct attccaaccc gactttcacg gtgcggattg ctttaccgtt atatttcact
      721 cttttgttgt gagcagggga cgacataaac cgcactgttt tcgcctccac ccccaaccgt
      781 tctgctaact cttccgccgt accgtcagcc acattctctt cgccaacata cagggcataa
      841 atcattcgcc gttttttcat ttctacacct tcgtaacacg ttcagactcc cacacgcatt
      901 tcaccccccg cacctgcatt tgatagctgt cataccgtct gccgcctttg gttttcattc
      961 caaacaggct tgccaagccg ttcttgacta aatcctgtgt tttgcagtta tcccgtaaga
     1021 ccaagcgggg tgggcttttc gcttcaaact ccactcgttc aacttccaac tccatcgcct
     1081 cacattccaa agtggcaatt tctaacttca caaggctgtc gtggataaac gcatttaagg
     1141 ggttcatcat ttcgcctgct ttttcgctgt aaaccttttg cataacttgc tccttagcta
     1201 atcaacatct tgctatattg ctcaaccaaa tctttactaa ttggtgtttg gttaatctcg
     1261 ctagaccgca ccacgccacg cattaactta cttaatcggc gggcattgcc gtgacaagct
     1321 ttaattagcg gggcattaaa ttcatttgta cctaacgcac tttcggctaa tagccccaaa
     1381 tcttcctcgc tcaaggcatt tcccaaatca caagcaaaac ctactcggct ataaagctgt
     1441 gccagctcat tatttttacc tttaagatta accaacaatc tcggcatacc ggctaacacc
     1501 acgcccacgc tggttaaatc gtggattcgg cggataaact ccagcgagcg ggtcgaaagt
     1561 aattcagctt catcaatcat tagcaacctt tcagagcctt ttaacttgtt cacaatgctt
     1621 tctaatagtt cgttatttac ccctctggca tttgccccca ccgcctcggc aatcttgcgg
     1681 agcaagactt taggtgtgca actcggatca acctcaatta atgttgcaga gctgtttctg
     1741 cgttcgtatt ctttgagcat ttgggtttta cctaagccgg ctgccccaaa aatcacatta
     1801 atttcgcctt caatatgggc aaactgcatt acctccattc ctctgcgtgc cgccaaagtt
     1861 ggcacaaaag cagcgttata tttcgcttcc accacttttg ccttatcacg ctcaatcagc
     1921 tcgtctactt tgcgatccat ttcagccaca ttgccgttat aatcgccttt gagatacaga
     1981 ctgactgtgg caacggatac acctaaaagc tgtgccactt gtttttgttg atagcctttg
     2041 ctatccatta aggctctaag ttcttggttt ttcatcgttt agcctcccac tgctaacttt
     2101 ttttcgtaat cctctttttc tgctcgggtc aaaaaaatcg gttctacttc ttttttcggt
     2161 tttcttgccg ttgccagcaa gctaaaatcg tttttctgct caatggttaa aaccgggttt
     2221 aattccgcat taatctcatc aagctgttgc tgtttaaggt tggctcggcg tttatggcgt
     2281 tctttacgct gctgttctac catcgccacc gggaatgcct ctcgggtgtt accgttccaa
     2341 attgcctcgc aaataaacct gccgtctttg gtacgcacct gcacgctctc ggcattgtga
     2401 atatcaatcc cgatcaccac ttcttcacgg tcaaaatcca gtaatttcaa gttaaaatag
     2461 tggttgttat tccaacttac ccaacctcga tccggcttac ggataaattc cggtcggctc
     2521 atatcccgca actcaatagg gcttaacatc accacatctt ctgcgtgcaa catctgctga
     2581 tatttgcgtg ccggcgtggt acggatttcc gagtgaatat gctcgttgtt gtaccagtca
     2641 atcaccgatt ggattacttc aatcaactgt tgccacgttg gcaatttgcc ttgggcttta
     2701 cgttgtagtg gggttaattc ccctttggca tttgccagtg agttcaccgc atacagggtt
     2761 ttgcgaacgg tttccggatc tgcaccggtt gcatagccgg tttcaaactg tcgggcaatc
     2821 gtcataccga tggttttatt taagcgttca ataatgcctc gcccctgcgg attgcccgca
     2881 atccctgttt cgtgtcggat accgaggcgg ggcaacatcc ccgtgatttc cgcatccaaa
     2941 aatttattct tttcaccacc accgttatcc gagtagtaga ttgccggcac accgtgtagg
     3001 ctaatggcgt ggcgtagtgc atcagccacc gcaaaggcgt tctcactgag tgccagcgac
     3061 cagcccacca cttttctacc agcaccatcg acaatcattg tcagctcagg ggtaaacggc
     3121 ttaccgtgta tcgggtgggc tactttgagc ttcagtgagt gaccgtcacc aatccataca
     3181 tcatttgctc gaagtaccga ccaatcccgc ttcacatagc tcagtaactg cttgtaatgc
     3241 gagccggtgc gtctgccgta ctctttcaca tacaacggca acttattcat cgctcgctgt
     3301 acttggctta ggctggggca ttgtgccaac agtagcgggt tgtctgcata ctgatacgcc
     3361 cattccacct caaattctcg gtaggcttcg gtgaggcaaa taccgttttt ctgccgatat
     3421 acgcctaaaa aagcacttag ccaccaaatt tcttccggct tggtctcctg ccgtacctgt
     3481 ggggcaagca gtttcaaccg ttgctcggcg ttctctgcct tgcagtaatc caccacccag
     3541 ccgtttaagg ttcgcaccga gagtgtgcgt tttgccgtct ttttagcatt tgctacggca
     3601 accagctccg ccaagtgcgg tggcatttcg ccttgtttgg caaggttgca aaggtaggtt
     3661 atcgctttaa tccggctcat tgagccttcc aactccaaca catacgccac cagtgccatt
     3721 cgtgcatcag caatttctcg ctgtttggtg gtcaggtttc ccacatccac ctctgcacgc
     3781 actaccggta actttttcgg cttggcttcc accaccgccg acataaagcg ggagcggatt
     3841 tcggtttgaa cttcggtggg taaagagtta atgtgatatt caaaaccacc tcctttaacc
     3901 cctttcaatg gacgagttgc ccattgttct tttttggctt gtctagttac atttgttggg
     3961 tattttgata agccactaat acctgctaat tcttttgcac taaaccaatc tttcataaca
     4021 gctatccttg ttatgcaaca tcagggtaac gactaggcca tatttcggct ggcgtttttc
     4081 ctaatgcttt tgcgataatt tcttcaccgt ttttataagg tttatcaaga gcatttctta
     4141 ctgttgtttt ggaaagccca ttctcaatcc ctaactgaga aaatgttatt cctttcttca
     4201 tcaattcagc tcgaatatca gctctatgca tatcttgagc tcttttcttt ttattcattt
     4261 tgtgagatcc tccacattta gtttatttgc tacgctttag cgtacttgat taa
//
LOCUS       DANMGB010000179         4296 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.180, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000179 DANMGB010000000
VERSION     DANMGB010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.180"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2..1870
                     /locus_tag="PXG19_002243"
     CDS             2..1870
                     /locus_tag="PXG19_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL6067500.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(2030..2926)
                     /gene="malM"
                     /locus_tag="PXG19_002244"
     CDS             complement(2030..2926)
                     /gene="malM"
                     /locus_tag="PXG19_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL6067501.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3007..4296)
                     /locus_tag="PXG19_002245"
     CDS             complement(3007..4296)
                     /locus_tag="PXG19_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL6067502.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
BASE COUNT         1160 a          894 c          877 g         1365 t
ORIGIN      
        1 tatgtcagga ttagttagtc cggaattaat taaaacagtc gcattacttg caaccagcgt
       61 cactattgta ccgctattta aacgccttgg tttaggaagc gtattgggtt atttagtcgc
      121 aggatgttta atcgggccat cgggcattgg attgttccaa gaccctgccg ctgttgtgca
      181 tatggcagaa cttggcgtgg ttatgttttt gtttattatt ggtttggaaa tgcacccgga
      241 actgctttgg gcgatgcgta aagccatctt cgggcgaggt ttcttacaag ttgcgatttg
      301 cggtacttta ttaaccttag ccggcattta cttattaggt ttttccaaag aagtggcatt
      361 tattgccggt atgggtttta cgctatcttc tactgccatt gtaatgcaag tgctggaaga
      421 taaagggata agttccacgc caaaagggca acgtattgtt gcaactttac tatttgaaga
      481 tttagcgatt gtgccattat tagcctcggt tgcctttctt gctcctaacc aagtagatgc
      541 tgaatccagt actaattggt ctgctattgg tcttagccta gttgccgttc ttattttggt
      601 tgcgagtgga aaatggctga tgaaccctat tttccgtgtt atttctaaag ccaaagtacg
      661 agaaatgatg actgccgctg ccttacttgt ggtattaggc tccgctcttt taatggaaat
      721 cagtgggctt tcaatggcaa tgggggcatt ccttgccgga gtaatgcttt cggagtcttc
      781 tttccgccat caactagaag ctgatattga acccttccgt ggtttacttt taggcttatt
      841 ctttatgggc gtaggaatgt cattagacct cagcctcgtc ctcaataatt ggctatggtt
      901 attggtgatt gtagcagttt atgttatcgg taaaggcctt ggaatcttca ttgctgcctc
      961 tatcacccga ttaacactga atgaatctat tgtgcgaact accattatgg ctcacggtgg
     1021 tgaatttgcc tttgtgctat tctcagccgc cgcaaccgct gggattttaa ccccagatac
     1081 tcacgctacc ttaaccgctg cggtaattgt ctcaatgttg ctttccccac ttctcatttt
     1141 aatcaagcaa ggagtgagaa agaaaaaagc gaaaaatgaa tccactaata tgacaggggt
     1201 tgaattaccg gaagatttag aagccaatgt attagtcatc ggttttggac gctttaacca
     1261 aatagtctgc caagccttat tagccaaagg actaagtgta tcggttattg attcaaatac
     1321 tgatcatatt cgtgctgctg ctcgttttgg ttttaaactt tactatggtg atggagcgag
     1381 actagatgta cttagggcat ctggcatcgc caatgcaaac tgcgtaattg ttggcgtagg
     1441 caatccggaa agaacggaga aaatcgtaga gctgattaaa tctgaatacc ccttagtacc
     1501 tgtatttgcg agaacctatg atagacaaag tgcggttgat ttagtcaaaa agcaccacgt
     1561 tgattatcac attcgagaaa cctttgaatc agccctcgca ttaagccaag ccgccattga
     1621 acgcttaggt tctagcgagg aagaggcaaa acaaattatc agctatgttc gccgattaga
     1681 tgcagaacgc tttaatgagg aattattaca cggtttctcc gcagaagtta tccgcaaata
     1741 ttgggtacca acaccttggg taaatccaca acacgaaggt agtgcactta atgaagaaac
     1801 ggctgatatt ttagaagagc ttggtgagac agtagaagtt ataaaagtgg atatcactga
     1861 taaaaattaa agaatttata ctttgaatcc ttattcaagt ataagccttc ctatacatat
     1921 cgcataatca ctcgtaaaaa agcaccctat cggcataatc tgatagggtg ttaatggtaa
     1981 taaaccatcg cacgatgaca aggagaatat ctatgaaaaa aacaataaat caatttgaac
     2041 ttacattttt taagaaaatt tggcgtggag aagtcagccc taatttttct gcctcgttaa
     2101 ccaaattcat cgctttatta atatcttttg ctttaatcgc tttcattacc gcctgattaa
     2161 aataggcttc cgtatcttta tctactgctg tttttactgc aactggattt tcttttatcg
     2221 gcaacggtat agccgtttta gctgccggcg ttgctgcttt gtttgagctg aaaatttcag
     2281 tcggtaatcc aataaattta gtgccgttcg agccggtaac gttgatgtga atttgccctt
     2341 ttaaactgtg tgctacttca atatcgttaa ttgctggtgg ttgtttaccg gttgcttttg
     2401 cataggtttt tgccggatgc ggcatcatcg tggttttggc taaatcttgc tgcgtggtat
     2461 aaatgagcaa gtaaatataa tcttggttca ttgccggcgt taaattaagt tctgccccta
     2521 aacggctacc tttgagtcct cgctcttcca ataatttaaa ctcagaagag gggtaagttg
     2581 atgccacatt aaattgacta tccaacacga ctgccgtggg tacaaaaaca tttttgtcca
     2641 tcaccgggct ttcgatttca atttccaatg tgccttgatt tgccggaata cgataagctg
     2701 caaccgggct ggcaataccg gcaaacgctg tggtaaatgc ttgtttgtgt tgctcgctta
     2761 gatctgtttt tacggtttgt gaaaatggca catcttgcca ttgaatttga gctaattcag
     2821 ccgagttaat atgaatagac ttacctgccg agccatttgc tatactcgga gacaccacca
     2881 aaagatgggc gaagaatatt gctgtcgaaa gaagcgtttt tttcatatta acccctaaaa
     2941 atcgtgaaat aggataaagt gctgaaatag tgggtaggta atcctaccca cacaaaggtt
     3001 tgatgattac caccaagctt caaattgaac accggtgata aactcgccgt ctttggcttt
     3061 atagccggca tcggtacgag ctttcgtgtt gaatttatca ttccaacgtg cataagtacc
     3121 aaacacacgg attgcagggc gagcccaaat gctattacca gcctgccatt gttgtgcaac
     3181 ggtgtatttt accaagtcat ttttcttgcc tgttgcttga tctttaatgc gatcataacc
     3241 aacttctaat aatgtactca ttgtatcatt ccatttgtac attgggcgaa tacctgctga
     3301 gtaccaagtt ttaccttgtt tattatctag ttttgttttt tcgtagatta aggcatacat
     3361 tacttcaact ttatcactcg cttgcactac cccttggttg attaaacgaa gcatattacc
     3421 tttattatct gctttcgaac cctgtgcgtg cccattattc caagaagtca tagagtcggt
     3481 tgcatattgt gcagtaaatt tattgaaacc accaaagaag ttaccttgag tgtattccgc
     3541 tgttaccata taaccgtttt tggttgctcc tttttcaagg gctgcacctt tcttagcatg
     3601 tgcattaccg taatcaaagc ctaactctaa cgaaccatct ttccaaagct caataccggc
     3661 taaccgaaca tcaaaaatat cgttgtaaac atcggcttta ttacgctgct tatctaattt
     3721 aattttacct gtgctaggat ctaatttata aactgtagta tatccaaaag tattcgcccc
     3781 tccacgctct gtatcacgag taaccgctaa agagagtttt ccgaagccta aatcaatatt
     3841 ttcaacccct gcacccggac ctgaaatatc ccagtaatag aagtcattca tatgtacatc
     3901 atggcgttgg taaaaacgtt taccagccca taaggtggca cctggtaaac tatctgcaaa
     3961 gtttttgaac tgtacattta attcacgtag tgctggactt gttggtgtcc aatcattatt
     4021 gtgaagcgta ccgccgtaag caaggtttgt atcaaagtag atagatttct caccactttt
     4081 gaataattcc tgacctaatt tcaattctgc ataggtatca gattcgttac ctaaacggta
     4141 ttttgaacca ccaccattta ccgtgaatgc ggattgctcc cccccccccg atgtccaacc
     4201 gatacctgaa cgtgcatatc cgtggaaatc aaccgctgat gcactggctg cgaacattgc
     4261 accactgatt gcaactgcta ggactgtttt tttcat
//
LOCUS       DANMGB010000180         4267 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.181, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000180 DANMGB010000000
VERSION     DANMGB010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.181"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(60..368)
                     /locus_tag="PXG19_002246"
     CDS             complement(60..368)
                     /locus_tag="PXG19_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6067503.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(370..738)
                     /locus_tag="PXG19_002247"
     CDS             complement(370..738)
                     /locus_tag="PXG19_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067504.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(713..1819)
                     /locus_tag="PXG19_002248"
     CDS             complement(713..1819)
                     /locus_tag="PXG19_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL6067505.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(2059..3102)
                     /locus_tag="PXG19_002249"
     CDS             complement(2059..3102)
                     /locus_tag="PXG19_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6067506.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(3206..3490)
                     /locus_tag="PXG19_002250"
     CDS             complement(3206..3490)
                     /locus_tag="PXG19_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067507.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(3520..3705)
                     /locus_tag="PXG19_002251"
     CDS             complement(3520..3705)
                     /locus_tag="PXG19_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6067508.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(3702..4223)
                     /locus_tag="PXG19_002252"
     CDS             complement(3702..4223)
                     /locus_tag="PXG19_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL6067509.1"
                     /translation="MVKFATLQLADKDLAEDVVQDALTNAYKHSASFRREAALKTWIF
                     AILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEHQDVTEWRGVAQSTYQ
                     KEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISLSNLNVLLHRARLRLQ
                     ECLSRNWFREESK"
BASE COUNT         1239 a          933 c          802 g         1293 t
ORIGIN      
        1 gggggaaaaa aggaaggcta aattaaaaaa gctcaaacaa taatgtttga gctttggttt
       61 tattcaatga cttttgcagt atatttgagg tttccgaccg cttgtatcag ggcttggtta
      121 tccacacttt cttttaccac cacagtcgct tttcgctctt tcattgaggc tttggtggaa
      181 atcacacctt ctactgctcg tagttcttta ttgactaaat aaacgcagag ctggcagtac
      241 atttccggaa tatggaggac gacggttttc tctgcttgtt tcgtttcaat ttgagctgtt
      301 ttttcttgtg cgtagcttga atgaaccaaa ccaaaagcca acagcatcgt tgcgatatat
      361 tttttcattt tattctccgc tccacatttc caaaatgtaa ggcaatacat aagggtaagt
      421 taaaaagaac atcaccacca cagaaactac ccaatacaaa atgaccaggg ttctgcggga
      481 gaagtatttg gtgcagatga ttttgttgga aaaattcagc aaccagaagc catagccaaa
      541 cgcagcgagc gaaatcagca acatcggcag ttgtagaaac tccagttggt ttagctccat
      601 caaccaaggg gaagagatgc caaacactaa ataaaccagt ggcccaatac aacagaatgt
      661 ggaggtcacc gccgacacta tggcggtcac gcacattgtg ataaatttat ggttataact
      721 ctttagagat gaattcatag ccaaattctt tcgcctcaaa cgagtttaac gggtcaccac
      781 ctacctcagc ataagggtag ccaaagttat tcagtggtgt aagttccggt tgtggatata
      841 aatcgaaatc acgtccgtga ttgaagccta cccagttcat ttcccagttg ccgaataagt
      901 atttcgagac cgcttgaaca tcagcatcat ccacgtcttt tttctcggct aaacgcattt
      961 tagcgacatc ggcagaatct acaggcaccc agccgaagcc tgctaaatag aactctgcac
     1021 ggcagtgctg cccgccgctt tcattcgcca cgccatcttt tgagctacca aatgcggttt
     1081 tggaatattg ccccattttt accgcttgcc ctaaacgaat accaaacact tcacgagcag
     1141 gaatgttaga ggcacgagca agtgctacaa acaccgagtt gatgtcggta catttacctt
     1201 ttagcacttt ggtggtgaga attttctcca catcgccatc gccacagcct agcaccgagt
     1261 tatcacgttc catattatca acaatccact tgtggataag ttccgctttt ttcaacggat
     1321 tttgctcgtt acccacaatt ttatcggcat attctttcac aataccgtct gttttaatgt
     1381 gagccgttgg ttttaaatac tccaatacat caacagaata agtgattttc tccggcattt
     1441 ggtaatttgc caacgcccct tgagccatag gctcacgatc ttgggtttgg atcaccattt
     1501 tcacttttag atcacgcttt ggtgcatcag tatcccaagt ggcaaacaag gtttttgcac
     1561 cataagcgtt attttctgtg atataggcgt ttttgtaact tccctcaaac tctatcgatt
     1621 ttaccgtttg ataatcggta tcagacggca acggaatcca caaattagtt gttcctttcg
     1681 agccttgtgg cacaactaaa tcataagatt gcgtaaattc gtaagtgtgg gtagtggtgt
     1741 ggaaattgtt ctgttgaaca ggagcagcaa aagccgtcgc acagcttgaa gccaccaaag
     1801 aggcaataag tttattcatt gaaatgatcc ttattagagt gaaaaaacag ttaaaactta
     1861 acatattaag tattctaact acggattgag gttgcatatt agccaatcga gatgggaaaa
     1921 gcaatggggg agatgatttt ttagatagtg caagcgtcca cgcttgtact agaaacaaag
     1981 ctaaaataat caataggcac aagcgtggac gcttgcgcca tcagagagaa taacaagcgg
     2041 tcaaaaatcc tcaaaatttt acaaatagat tttttgccct aattttgcac tttcaaatac
     2101 gctttcgatc acttttagca caaaaatgac gtcttcgagt ttgataattg gctcagcatt
     2161 gtgagcgatg gcttggtaca aatcatcaaa caagttttga taactgactt cggcatttcg
     2221 atagggctgg cgaaccacat taccttccac ttcagtgtgt aaaattcccc agttctcctt
     2281 ttcttcgata ttccaatctt tgccaatagg ttgtacgcca tttttcagca aatcttcttg
     2341 attatcggga gtttgtttca gataagagcc taattttccg tgtaatacaa atgtcgggct
     2401 tggttcacga gcatatcggc tggctttcag caccacttta aaaccgttag cataatagag
     2461 ctgaatatca aagttatcat caaccaatgc cccttcgtgc tgataacgca catcagcata
     2521 caccgcctcc ggcttcccga aaagatacaa agcttggtca attaaatgta cgcctaaatc
     2581 atacactaaa cctgtaccaa gctcgcctga ttctttccat actttaacat ttttctcttt
     2641 cgcataacgg tcaaaacgaa tttcgcaatc taccaactct cccagtaaat tttgctccat
     2701 tagcgatttt gccgtcgcaa tatggctgtc ccaacggcgg ttttggtaca cataaagcac
     2761 ctttccttgc cgctttgcaa gttccgccaa ctcttccgcc tcagccactg ttgccactaa
     2821 cggtttttca actaaaacgt gtttgcctgc aagcaatgac tcttttacca ttgcataatg
     2881 ggtttgattc ggtgtggtaa tcagcactaa atccacttct ggcgttaaaa gagcgttgaa
     2941 atcccgcact gtttctgcat tcggcaacca ttctgccgca ttgttagagg ttcgttcata
     3001 tacctttaca atattaaaac gagcatcttg tttcaaaaac gggatatgaa aaactcggct
     3061 ggaaaagccg gcacctgcga tggcaatatt gatgggttgc atagacaatc ctcataaaat
     3121 tttgatgtta tctgcttaaa taaacaagcg gtcaaatttt aggaaaattt tgcaaaaaac
     3181 agataaaata cgaccgcttg tttaactaat cataggtttt gcaaacaata tctttttctt
     3241 cacaaaacat ttcactgtgg tttgcacggc attgcttttg tacatttaat ttggctctgc
     3301 ctcggctact atgttcacta cgatattcct gagtaaatgg ctttagagta caaatgtgaa
     3361 cctctttgga atcaagtgga tctgagacac caattataat cggcataggg ataccggctt
     3421 gccccgtagg agtaaccggc acgacacagc cacttaatag tatgcttaaa cttattaacc
     3481 aataacgcat atttttctcc ttttaaaatg tataataaat cagaacggag catctttatc
     3541 gttacagtaa gctcttaata tcttgcctaa tttcttggta tttttattaa aatttcggca
     3601 tttagggcat accaaaagat gcaactgcaa acgcatatgt tgttgcaaac gaagtttctc
     3661 atcacaagac tgtgaaataa gttctgttgc ttgcctgcat ttcattttga ttcctctcta
     3721 aaccaattgc gagataaaca ctcttgtaaa cgtaaacgag cacgatgaag taatacattt
     3781 aagttagaga gagaaatttc acattcttgg caaatttccg cactactcat ctccaaatgt
     3841 tcacgcatca taaatactcg tgcttgctgg gcgggtaatt tatttaaaca aatatcaaaa
     3901 attgcccaaa attctttttg gtaagttgat tgagctaccc ccctccattc agttacatct
     3961 tgatgttcca accaatgatc gtggcgatcg aaaaaggcac ttggtgattc ttcttcctca
     4021 catagagaac tgactggaat atgtcgtttt cgtgttctga gtaaatctaa aattttgttc
     4081 tttaaaatag caaaaatcca agttttaagt gcagcttctc gccgaaaaga ggctgaatgc
     4141 ttataggcat tggttaaggc atcctgtaca acatcctcag ctaaatcttt atcggctagt
     4201 tgtagggtgg caaatttaac catttgcttt ctaatctctt ctatctgtgt agaagataga
     4261 ctcttca
//
LOCUS       DANMGB010000181         4256 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.182, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000181 DANMGB010000000
VERSION     DANMGB010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.182"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(47..122)
                     /locus_tag="PXG19_002253"
     tRNA            complement(47..122)
                     /locus_tag="PXG19_002253"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Asn,seq:gtt)
     gene            complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXG19_002254"
     CDS             complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXG19_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL6067510.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXG19_002255"
     CDS             complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXG19_002255"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL6067511.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2337..2954)
                     /locus_tag="PXG19_002256"
     CDS             complement(2337..2954)
                     /locus_tag="PXG19_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL6067512.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3022..4233)
                     /locus_tag="PXG19_002257"
     CDS             complement(3022..4233)
                     /locus_tag="PXG19_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL6067513.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
BASE COUNT         1300 a          991 c          784 g         1181 t
ORIGIN      
        1 tataaaagga gacaaataaa acaagaacaa aagaaaaata aaatcttggc tcctcctgcg
       61 ggactcgaac ctgcgacata tggattaaca gtccaccgtt ctaccgactg aactaaggag
      121 gaattaacgg tgtaaataat aggctaaaac gttttagccg tcaaataaaa aaaataaact
      181 gtcgttcatt ttttacattt cttgacattt tttcgccaat aagtatgaga aaaatactta
      241 ataagaggta caaaccggac agttattttg cttaggtaat gccatttctc tgacagaaaa
      301 atgcaagccg tcaatcatta acaattttcc ggaaagagtt ctgccgatat taagtagcac
      361 tttaattgct tccaacgctt gaatactgcc tatgatgcca acaatcggag caatgacccc
      421 cgcttcaaca caacttaaag tcgcatcacc aaacaacctg cttaaacatt catagcacgg
      481 ttcttgttct tgataacaaa atacactcac ctgcccttca aatcgaattg ccgaaccgga
      541 aacaagcggt cgtttttgct taaaacattg caaatttaac tgattacgca cagtaacgtt
      601 atcggtacaa tccagcacta aatctacatt tgcaatcagc ttggctaact gctcatcgga
      661 acatcgctga ttgatagttt caatctgaat gttcggatta atcgccgcta atcgagcttt
      721 ggcagattcc acctttggct gcccgatagt cgcatcggta tgtaaaattt ggcgttgcag
      781 attagaaagt gagaccagat caaaatccac caaagtcaaa tgcccaacgc cggcagaagc
      841 taagtattgc gatgccgcac agcccaaacc acctaaaccg acaatcaaca ctcggctggc
      901 ttttaacttt tcctgcccgt caaaatccac gctttttagg ataatctggc gattataacg
      961 tagcatttcg tgatcggtaa gttccatttt tacacctaaa gagtaaacga tggcgcaagc
     1021 gtccacgctt gtgcctatat ttttattgct agcacaagcg tggacgcttg cgctatctta
     1081 attcattaat acatcagcga attaaacggc tgaatagtga ctttttcccc agcatcaaca
     1141 ttgcctcgtt ctgcttctag cacaataaaa cagttacttt cattaaaagc gctgaaaata
     1201 tgtgagcctt gcgtgccaac tgcacgaact tctaactcac ctttttcatt ggcatagtaa
     1261 tagccccgtt ggaaatcttg gcgaccgacc gcttttttca attttccggc actgcaagcg
     1321 gttagatttt gggttaattt tgcaatttta tctgtcgata aacccgaaag tttggctaac
     1381 gccggttgcg ctaattggta gaaagtcact aatgcagaga cagggttgcc cggcagccca
     1441 aaaaaccaag cctgttctaa tttaccgaat gcaaaaggct tgcccggctt catcgcaatt
     1501 ttccagaaac cgatttcgcc taatttttcc agtacatctt tggtaaaatc tgcctctccc
     1561 acagatacgc cgccactggt aatcaacaca tcggcttgct gttgggcttg cctgaaagtt
     1621 tgctcaaaca gaattgggtc atcaggcaaa atcccaaaat ctaaaatctc gcagttgagt
     1681 ttttccagca ttaaacgcac cgcaaaacgg ttggtgtcgt aaatttttcc ctcactcaaa
     1741 ggctcgccaa ctgaggttaa ttcatcgccg gttgaaagaa ttgccacttt taattttaca
     1801 aaaacaggca cagaagcaat accgagtgaa gctagcaacg gtaaactggc tacattcaat
     1861 aatgagcctt ttttcaagac caatgccccc tgtttaacat cttccccaat gcggcgaatg
     1921 ttactgccta attttggaat atggttaaag gttacagagc catcggaatt taacgtagtt
     1981 tcctcttgca ttacaacggc atcaacgccc tttggcacta atgctcccgt cataatccgc
     2041 acgcattcgc ctgcctttat ttcgccgtta aacgggttac cggcaaaggc tttaccagcc
     2101 acattcaagg ttaaattttg tgctaaatct gaaatacgaa ccgcgtagcc gtccatcgcc
     2161 gaattatcaa aattcggtac attaatcggg gaaaaaatat cctctgccaa cactcggtta
     2221 gcacactcat ttaacggaag ttgttccacc aatttaggtg tcgataaacg agcaagcata
     2281 ttatctaacg catcactcaa agccaaaagt gccataattt cctacctatt caacgtttag
     2341 ctaatttgta caaagaaatc ccgtacgcca atcaacagat tattcaccgc aatcgcagcc
     2401 agaattaacc ccatcactcg gctgataatc gcagcccctg cattaccaat aaggtgctga
     2461 atacggtttg ccgctaatag caacaaatag gtaataaaga gtaccaaaag cataatgccg
     2521 gcggtgataa tttgatcgcc gatatgaaaa cggtgattgt cggttaataa tacgattgcc
     2581 atcatcgccc cgggagaagc aatcgacggt acagctagcg gataaaccgc caattcattc
     2641 agattactgc tgatccgcat ttcttgctcg ggcttgcttt cgccaaaaat catcgttaaa
     2701 gcaaataaca acagcactaa gccgcctgcc gcttggaatg caggtaacgg aatctgcatt
     2761 gattctaaca gcacttgccc accgataagg aagaaaatca aaataccggc ggcaatcaag
     2821 accgcattta gtgcaatttt acgccgtgct tcaatcggca aaccaatggt ttttgccaaa
     2881 taaacaggaa cagaaccaat cgggtcgatc accgcccata aaaccacaaa ttgtaccgct
     2941 aatgaatcaa acatattctc tcctgttatc ttgataattt gcaaaatttt agcataaaac
     3001 aaccgcttgc acggcttttt cttacagata gctcaccggt aacgctacca aattttcact
     3061 taaataaagt ttggtcggat attggttaat aatcgctccc tgccctaatt tccattcact
     3121 agaaactgag tttagcaagt caaaactttt tgccattttt ttggttgggc ttgccgtgac
     3181 cttaatttct atcggataaa gcgtgcgatc atattcaata attaagtcga tctctttctg
     3241 gttagtatca cggtaaaaat aaatcggcgg ctcaattcct tgattatgaa aggattttat
     3301 aatttggctt accacaaagg tttcaaagaa ctgccagctt tttgcccctt gagcaatagt
     3361 ttcgggggta agccatttgg ttaaatacgc cattaacccg gtgtctagaa aatacacttt
     3421 tggggtctta attgcccgtt tcaaatgatt gttgtggtat ggctggagca aatagataat
     3481 gccggaagtc tgcaaaatgg cgacccaacg tttaatcgtt tcattcgata ctccaacttc
     3541 ttgagcaata ttactgtaat tgagtagctc accactacga gaggcaatag agaccataaa
     3601 acgggtaaaa tccgttgtgc tggcaatatt ggttaattgg cgaacatctc gctcaatgta
     3661 ggtcgctaca taagagcgat aataaatctc ccaatccacc tcttgtgcat ataaacgagg
     3721 catatcgcct ttatggataa gctgccagat gttctccggt gattttaatt cttgctcccg
     3781 agctaacaaa tagtcggttg tcggtaaaaa aggttgatcg aacttcaccc ctaaaatttc
     3841 acgcaacgaa agcccttgta attttaaaat agcaatacga ccggcaagtg tttcactcac
     3901 attctgcatt aattcaaagg cttgcgaccc cgaaagtaaa aacaaaccgt tttgctgttt
     3961 tttatcaatt tctaacttta ataacgcaaa aatttcaggc acatactgta cttcgtctaa
     4021 aataagcttg ccttgatggt ttaaaaaaaa caggcgagat tcttgtttag ccagctccag
     4081 caacattggg tcatcaaaag taatatattg atagccctca ccaatatgtt gtaacaatgt
     4141 cgatttacca acctgtcttg cccctgtcac taaaacggca ggaaattgcg ccacgagtcg
     4201 ttttaacagc gattgcattt gccgagaaat catttttcct ccaaaatagc ctaaat
//
LOCUS       DANMGB010000182         4244 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.183, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000182 DANMGB010000000
VERSION     DANMGB010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.183"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            46..1254
                     /locus_tag="PXG19_002258"
     CDS             46..1254
                     /locus_tag="PXG19_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL6067514.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1307..3442
                     /gene="pta"
                     /locus_tag="PXG19_002259"
     CDS             1307..3442
                     /gene="pta"
                     /locus_tag="PXG19_002259"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL6067515.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3556..4236
                     /gene="can"
                     /locus_tag="PXG19_002260"
     CDS             3556..4236
                     /gene="can"
                     /locus_tag="PXG19_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL6067516.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLNDEN"
BASE COUNT         1326 a          789 c          867 g         1262 t
ORIGIN      
        1 tagtattttc ttcaaactca tttcataaaa taaggtaatt tgaccatgtc taaaaactta
       61 atcttaatcc ttaactgcgg tagttcatct cttaaatttg ctattttaga tcctaaaaca
      121 ggtgatgaaa aattatctgg acttgctgaa gcttttcatt tagaagatgc acgtatcaag
      181 tggaagttaa acggggagaa aggtaatgct gatttaggtg caggtgccgc acatagtgaa
      241 gcacttacct ttattgctga aaaattgtta tctgacgaat taaaagcagg tatcggcgcg
      301 attggtcatc gtattgttca tggcggtgaa aaattcacct catcagttgt aattaccgat
      361 gaagtgatta aaggtattga agatgcaacg caatttgcac cattacacaa ccctgcgcat
      421 ttaattggta ttaaagaagc attccgcatt ttccctgaat taaaagacaa aaacgtagct
      481 gtatttgaca ctgcattcca tcagacaatg ccggaacacg cattcttata tgcacttcca
      541 tatacattct ataaagaaaa tggtattcgt cgctacggtt tccatggcac aagccacttc
      601 tatatcacct cacaagttgc agaattagca ggtaagtctg ttgagcaaac caatgccatt
      661 atttgccact taggtaacgg tggttctgtt tctgttgtac gcaatggtaa atgtattgat
      721 acctcaatgg gtttaactcc attagaaggt ttagtaatgg gtactcgctc tggtgactta
      781 gaccctgcga ttatctcttt cttatacaat aacttaggta tgtcaatgga cgaaattgat
      841 actactctag taaaaaaatc tggtctttta ggtttaactg gcgtaactag tgactgtcgt
      901 tatgcggaag ataattacaa tgacgtatca aaaccggaag caaaacgtgc tttagatgta
      961 tatagctatc gtttagctaa atatattggt tcatatatgg caattttagg cgatgaccac
     1021 ttagatgcta tcgcatttac aggtggtatc ggtgaaaatt caggcttagt acgtgaatta
     1081 accttaaatc acttaaaatt atttggcatt aagttagatc aagagcgtaa ccttgctgcc
     1141 cgttttggta aagatggagt cattacagcg gacgagtcaa catttaaagc tgttgttatc
     1201 ccaactaatg aagaactcgt gattgcacaa gataccgcta aattagcatt ataatcatag
     1261 ggggcagata ttctgccctt tcactttctt ttaatttgga aatattatgt ctagaacgat
     1321 cattcttatc cctatttcaa ctggtgttgg tttaaccagt gttagcttag gtttagtaca
     1381 tgctttggag caaaaaggtt ctaaagtagg atttttaaaa ccgatttctc aacctatcag
     1441 cggtgaagat acgttagacc gctcaacaac gattatcaga gcagaacaaa caacagaggt
     1501 tggtgagccg tttatgttaa gcgaagctga aacattaatc ggtcaaaacc aaacggatgt
     1561 attgttagaa aaagtggtgg aacgccacca aaaattatca aaaaataatg aaattgtcat
     1621 tgttgaaggt ttaattccaa cgcgtaaaaa ctcatacgct aacagcatta actatgaaat
     1681 ggctcaagcc cttgatgctg aaattgtatt agttgcagca ccggcctcag atacaccagc
     1741 tcaattaaaa gagcgagttg aagctgccgc ttcacaattt ggtggacgta acaacccaaa
     1801 tttactgggc gttattatca ataaattcaa tgcaccagta gatgattcag gtagaacccg
     1861 tccagatttg actgaaattt ttgattcatt tcaacactca aataataatg tttcagaagt
     1921 cgagcatctt tttgctaaaa gtccaattaa gctgttaggc tgtattagct ggaaagcaga
     1981 acttattgct acacgagcaa ttgatgttgc aaaacattta ggcgcttcaa ttattaatga
     2041 aggcgaaata aaggctcgtc ggattcgcgg tgtgacattc tgtgcacgta acttaccaaa
     2101 tatggtcgat cattttaaag ccggtagttt attagttacc tctgcggatc gtcctgaagt
     2161 gttagttgct gcatcgttgg cggtaatgaa tggcatcgaa attggtgcta ttttactaac
     2221 cggtggttat aaaattgata gctcaattgc aaaactttgc caacaagcat ttgaaaccgg
     2281 tgtgcctgta ttccgtattg aaggtaacac ttggcaaacc gcattaagcc tacaaagctt
     2341 cagcttagaa gtgcctgtag atgataaaga gcgtattgct gcaattaaag aatatatggc
     2401 aagcaaattt aatgtaggtt tcattgatga ggtttctaaa gccgctactc gtgcaagacg
     2461 tttatcacct gcagcattcc gttaccaatt aaccgaatat gcccgtcaag cgaaaaaacg
     2521 cattgtttta cctgaaggag atgagcctcg tactgtgaaa gcggctgcat tatgtgctga
     2581 gcgtggcatt gcagaatgtg tgttattagc taacccaaca gacgtacaac gtgttgctga
     2641 agcacaaggc gtggtattag gtaaaggcgt aacgattatt gaccctgcga gcattcgtga
     2701 aaattatgtt gatcgcttag ttgaattgcg taaagcaaaa ggaatgactg aagttgttgc
     2761 tcgtgagcaa cttttagata cagttgtatt gggtacaatg atgcttgaag ctaatgaagt
     2821 ggacggttta gtctcaggcg cagttcacac aaccgctaac actattcgcc caccaatgca
     2881 gatcattaaa actgcaccgg gaagctctat tgtatcttct atcttcttta tgctactacc
     2941 tgatcaagta ttggtatatg gtgactgtgc ggtaaaccct gacccaactg cagaacagct
     3001 agcggaaatt gcgattcaat cagcagaatc tgccaaagcc tttggtattg accctcgtgt
     3061 tgcaatgatc tcctactcta ccggtacatc aggttcaggt gcggatgtag aaaaagtgaa
     3121 agaagcaact cgtattgccc aagaaaaacg tccagattta atcattgatg gcccattaca
     3181 atatgatgcg gcgattatgg aagatgttgc ccgctcaaaa gcaccaaatt cacctgtagc
     3241 aggtaaagca actgtatttg tcttcccgga tttaaatact ggtaatacca cctataaagc
     3301 ggtacaacgt tcggcagatt tagtctctat cggcccaatg ttacaaggta tgcgtaaacc
     3361 tgtaaatgac ttgtcccgtg gggctttagt tgacgacatc gtttatacta ttgcgttaac
     3421 tgcgattcaa gcaacgcaat aattccctcc caaatgaaac caaatgccct taaaactaag
     3481 ggcattttta ttttttacct acccgacttt tcaatttaat catataatca agattagtgt
     3541 taaaaaggag aatttatgga aaaaattgaa cgcttatttg ccaataacca cgcctgggca
     3601 actaagatga aagatgaaca atcggattat tttaaagaat tagcggaaca tcaaaagcca
     3661 acctatttat ggattggctg ttccgatagt cgtgtgcctg ctgaaaaact cacagggtta
     3721 ggccccggag aattatttgt tcatcgaaat gtagcaaata tggtgattca cactgatctt
     3781 aattgtctgt cggttgttca atatgcggta gatgtattag aaattgagca tattattatc
     3841 tgtggtcaca ctaattgtgg tggtatcaat gcggcaattg cacaaaaaga acttggttta
     3901 attaataact ggttgttaca tattcgtgat atctggttta aacacagcca tttactaggc
     3961 aaacttccct atgaagagcg atcaaatgtc ttgacccgat taaatgttgc agaacaagtt
     4021 tataatttag gtcagtcctc tattattaaa accgcttggg aacagggtaa atccctctcg
     4081 ctacacggtt gggtatacga tgttacagat ggtttcttga ttgaccaagg tgttatggct
     4141 actagccgag aaacattaga aattacctat cgtaatgcaa tagctaaaat aacaaccgaa
     4201 gcaaacgaaa aaatagtttt aaacgatgaa aattagccat tgta
//
LOCUS       DANMGB010000183         4213 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.184, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000183 DANMGB010000000
VERSION     DANMGB010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4213
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.184"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(63..695)
                     /locus_tag="PXG19_002261"
     CDS             complement(63..695)
                     /locus_tag="PXG19_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL6067517.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
     gene            complement(749..1270)
                     /gene="hscB"
                     /locus_tag="PXG19_002262"
     CDS             complement(749..1270)
                     /gene="hscB"
                     /locus_tag="PXG19_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL6067518.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            complement(1280..1603)
                     /gene="iscA"
                     /locus_tag="PXG19_002263"
     CDS             complement(1280..1603)
                     /gene="iscA"
                     /locus_tag="PXG19_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL6067519.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            complement(1712..2095)
                     /gene="iscU"
                     /locus_tag="PXG19_002264"
     CDS             complement(1712..2095)
                     /gene="iscU"
                     /locus_tag="PXG19_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL6067520.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            complement(2222..3442)
                     /locus_tag="PXG19_002265"
     CDS             complement(2222..3442)
                     /locus_tag="PXG19_002265"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL6067521.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            complement(3497..3949)
                     /gene="iscR"
                     /locus_tag="PXG19_002266"
     CDS             complement(3497..3949)
                     /gene="iscR"
                     /locus_tag="PXG19_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL6067522.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
BASE COUNT         1198 a          920 c          739 g         1356 t
ORIGIN      
        1 aatttctttc gttctaaaaa aataagctaa acagcctata tttcagcctc tcttacaaac
       61 acttaagcca ccgaatatcc catattttca ggggcaaatt cgccttggta gtggcgttca
      121 atcggaacgg cgattttact tgtaagatcc agcacttgat gcccttgtaa tttctctaca
      181 tcggtttgcc agttttccca acgcaaatcc tgataaaaat ggtttaaatc tccggctaat
      241 gcccagccta gaaattctga ataacctaat tgggtgtttt cccatttttt agcttttgga
      301 tgataataat aaactttgcc aagatctgag ccgattccgc cggcattaat ggcaaaatag
      361 ccaccgattg catcatccgc taccagcaag tggcttggtt gttcgccaga ttgtttaaaa
      421 gttttgccaa agttccaatc aaataagcct cgaggcaatt tttcgttgcc tgagcctaaa
      481 atgcgtaacc aaccgtggtc aataaatacg ccaccggttt catacaccat tgcccctagc
      541 ggtgagcgag tagaaagttg cataccaacc aatgcactgc cggcatcttc agggtaactc
      601 gctaaaattt cgtaatgatt tttggcttgg gtaaaccagt ctcttaaaat taaccaagcc
      661 gattgtttat ctaataattg ttctaaattt ttcatttgca aaatttcctt agaatttgac
      721 cgcttgcgaa aaccatacaa atgtaggatt aatagtcaaa gaatttttct tctactttct
      781 caatctgaat aattaatttt ttaaagtaac ggagcttgtc ggttaacgca ttggcttttt
      841 gccagtcggc tgtatttaac gtttgttcaa gctgttctaa tactgctttt tgttccgctt
      901 taatctgttt taaaaagacg gtcagttcgg tttcgtcttt acgatgctca atggtttcca
      961 gtttttcgtg ccattcgagt tgctgcatta agaaatccac atctcgcata cttttttctt
     1021 cgagattttt ggcttcacct gtatggattt caatcatcgc ttctgcccgt aaaatcggat
     1081 ctttaagaat attgagtgcc tcattgacat cagcagattt ttgcaccgct tctaactgtt
     1141 cagcacttga tttgtgggca aagttatctg ggtgaagctg tttctgtaaa gcaagataac
     1201 gctcagaaag ctgggcgtta tcaagttgaa attgaacggg taaatcaaat aaagtaaaag
     1261 ggttattcat tacagttcct tacacactaa aactttcgcc acagccgcat tcgtttttaa
     1321 cattcgggtt ggtgtattta aagccttcgt ttaagccttc tttcacaaaa tccagctgcg
     1381 taccgtttaa gtaagtcagg cttttttcat cgacaataac ttttacgccg tgttgttcga
     1441 aaacctgatc gtcttcattt aatacatcaa caaattcaag cacataggca agccccgaac
     1501 aaccggaagt tttcacacca agccttagcc cgataccttt acctctgttt tctaagaatg
     1561 tacgaactcg gtttgcggca gcttctgtta aggtaatgct catagttttc cttatgtgaa
     1621 tggattaaat caagatagaa atagcaaatg caagcggtta aattttgcaa attttttgca
     1681 aaaatcgacc gcttgcattg attgtatcat attacttagc ttgtttctct ttgtagtctg
     1741 caattgcagc tttgattgca tcttctgcta agattgaaca gtgaactttt accggtggta
     1801 attctaactc ttcagcgata tcactgtttt taatcgcacc tgcttcctct aatgatttac
     1861 cttttaccca ttcggtaatg agagaacttg atgcgattgc agaaccacaa ccgtatgctt
     1921 taaagcgtgc atcttcaatg ataccttgat cgttcacttt aatttgtaaa cgtaaaatat
     1981 caccacaagc cggtgctccc accatacctg taccggtgtc tgatgcttct ttatcaaaag
     2041 tccctacgtt gcgtgggttt tcgtaatgat caattacttt ttcgctatat gccatttttg
     2101 tattcctttt atttcctatt tccggcgaaa cctatttcgc ccctacattc aatttactat
     2161 ttgtgatgaa agcttatttt gtaggggcaa atattatttg cccttgcaaa atttttctga
     2221 attagtggtg attccattcg attttagaca aatctacacc ttctttgaac atttcccaaa
     2281 gaggcgaaag ctcacgcaat ttcacgatag cttttttcac gatttcaata gtatgatcga
     2341 tttcttcttc agtcgtccaa cgacctaaag tgaaacggat tgagctgtga gctaattcat
     2401 cgtcacgacc gattgcacgt aacacataag atggctctaa acttgcagaa gtacaagctg
     2461 aacctgatga tactgcgata tcacgtaatg acatcattaa cgattcgccc tcaacaaagt
     2521 taaagctgat gtttaggttt gaaccgatac gtttgccttc ttccattgaa ccgtttacat
     2581 atacttcttc aatatcttta aagccgttat ataaacgatc acgtaacacg gttaaacgag
     2641 ccatttccgt tgccatttct tctttagcga tacgatatgc ttcacccata cctacaattt
     2701 ggtgaacagg caatgtaccc gaacgcatac cacgctcgtg accgccaccg tgaataattg
     2761 cttctaaacg cacacgtggt ttacgacaaa catatagacc gccgatacct tttggtccgt
     2821 ataatttgtg gcttgagaaa gacattaaat caacatttaa gtcttgtaca ttcacttcga
     2881 ttttaccaac agactgggtc gcatcaacgt ggaaaatgat tttcttcgca cggcagattg
     2941 caccgatctc tttaatcggt tggattacgc ccatttcgtt atttacgtgc attaccgaaa
     3001 ctaaaattgt gtccggacga atagccgctt ttaatttagc taaatctaaa ataccgtctt
     3061 cttcagggtc taagtaagtc acttcaaaac cttcacgctc taactgacgg caagtatcta
     3121 atactgcttt atgttcggtt ttaacagtga taatgtgttt acctttggtt tgatagaaat
     3181 gagccgcacc tttgatggct aagttatccg actctgttgc accagaagtg aaaacgattt
     3241 cacggctgtc tgcaccgatt aaatcggcaa tttggttacg agccacatca accgcttctt
     3301 ccgcttccca accaaatttg tgtgagcgag aagcagggtt accaaagata ccgtctttgg
     3361 tcatatattc catcattttt ttcgcaacac gttcgtccat tggtgtggtt gctgcgtaat
     3421 ccaaataaat tggtaatttc attgttactc ctagttaaaa caacccaagc ggtcattttt
     3481 gataaaaaat ttgcaattag tgatgatgag gatgatcgtg acaatgctct ttttcacaat
     3541 cgtgatcagc gtgttctgcg gctaaatccg caactgaaat tgtccctaaa aactgctcaa
     3601 tttgatcttc taaccgctcc cacaaagaat gcgttaaaca ctgagaatct ttacggcaat
     3661 taccactacc tttacatttg gtgacatcaa tattttcatt cacggcggag atgatcatac
     3721 ccacgctaat ctcttccggt tttttaccta attgataccc accacccggt ccacgaacgc
     3781 tctgcacgat accgtcacgg cgaagttgag caaacagttg ctctaaataa gacagtgaaa
     3841 tcgcttggcg atctgaaata tcggctaagc taaccggctc tagttttccg tgtaaagcaa
     3901 tatctaaaat ggcggttact gcataacgcc cttttgaggt aagcttcata aaatatcctc
     3961 attgattatc cagaaaatct tctgaaacag ttgctaaatt ttgatatacc ccaccaattt
     4021 agtcaatcat ttaggactaa ttagtgtaaa aggttttata tattaaaaca gattaaaaca
     4081 ataacgctga ttatacgaaa aaagagccga aaataccaaa ataccaaaga taaacagttc
     4141 atagaccgca caatttcact cttatttgct cctaactgat cggaacagtt gaaatttaat
     4201 tgatagagag tac
//
LOCUS       DANMGB010000184         4170 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.185, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000184 DANMGB010000000
VERSION     DANMGB010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.185"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..1081)
                     /locus_tag="PXG19_002267"
     CDS             complement(<1..1081)
                     /locus_tag="PXG19_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6067523.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQL"
     gene            complement(1146..1577)
                     /locus_tag="PXG19_002268"
     CDS             complement(1146..1577)
                     /locus_tag="PXG19_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067524.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1581..3683)
                     /locus_tag="PXG19_002269"
     CDS             complement(1581..3683)
                     /locus_tag="PXG19_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6067525.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
BASE COUNT         1157 a          824 c          797 g         1392 t
ORIGIN      
        1 tcagttgtat aattcgttct gctaatgatt gaaattcttg gtcaaaattt tctttacttt
       61 catccattgt attcaaagca tgtccaaatt gacctgagtt tttaatttgc tcttttgtta
      121 aggaaaatac gggaactcgt agctcttggc taatagcaat caacgaatta aagtcggcta
      181 tgtgagccaa atcaaatggc tctaagtcag aattcgttga tttaagagca gcataaatag
      241 ctgtatcatc aatagcacaa tcaatagttt ttaataccgg cacaaaattc gtaatgactt
      301 catttctaat tcgctcaatc catttttcaa atgatttggc cggttgccct tttcttggtc
      361 gataacgttg ctgaatagta cctaaaaatt gtggcttatt tttaattgca taagatgatt
      421 ggttaaaacc attaagttct ttaaatgctt ttaactcatt atgccatttg cgaatatttt
      481 tagcgagcga accaactgct tgccagcaga aaaaatcagg tgatgtaggt acaataaagt
      541 aatcactaga cattaggata acttcattta atccacccac atttggacta agatcataga
      601 gtatgtaatc aatattgttt tgttcagcta ctttcttaat taaagtcgga agattgccgg
      661 gtatatttct tgttgctgga acaccggcag caatttttaa tgatacacta atttgcgaat
      721 caagctcgga aacattaagg tgaccaggta acaagaacag atttggattc agggtttgag
      781 tgatttggcc aacatttcca ctaaggtagt tatcagggct ttgtccgttt atcagtgctt
      841 caacaatacc ttccatagtc aaatgatgtc tattattgta aaaaagcgct aaatcactat
      901 cttctttgca ttgatcgtag ccaagtacca gaccggttag gttacattgt gaatccaaat
      961 cgactaacaa tacttgatag ccttgatttg ctaaactcca accaacatta aatgcagttg
     1021 tagttttagc aatacctcct ttatgattaa aaatactgat agacttactc ataataccca
     1081 taattctatg aaataattaa cccaccgaac tcatttgaga atggtgggtt aatgctttgc
     1141 tttagctagg ctgcaaatcc agattttctc atcagtttgc gatcaaagtt gtggcgaata
     1201 ggcttatcgg aacgacattc aaatgatgta atatcatttc ctgttttaat atcctgaatc
     1261 tgaacacttg cttcaaaagg tgatttaggg tctgcttcta tatgacctac aatataagat
     1321 tttcctgcat ttcttaattc gagcgagatt gttgtgaatt gtgaaccacc tgcaatctcc
     1381 gatgccggat ttttgagagc ttcttttaca ggatttttga atgtggtatt accgtgagag
     1441 tacacatagt ttcccccctc tttggtaact tttaacgttt ggttatctgt agttgtgcaa
     1501 gaatacacta cattgttatt tgcaaaagca ttcattgaga aaaatgctga taaagctaca
     1561 attgccattt ttttcatagg ttagtttcct tttggtgcgt tgataatgta atcggcttcc
     1621 tggttacgtc ttcgagcatt aacaccatta ttatgccctt gtaaatttcg gattgagtta
     1681 gctaaagccg tcatatcacc tgattgtgcg gagacggcag ccgctttttg aacactttct
     1741 agtttagata atgacccata gttgtatgat accgacgtta atgctgcttg tgcttgagga
     1801 gtcaatttag cccaaacgtc ggcaccaaca ttaccccttg caacattcat aaattgaggc
     1861 attcttcgtg ctaaatcacg ttcagcatct tcccggctta cataagtgcc tttttgaacc
     1921 cgatgaacca taccatctgc agtagtatag gtgtcagagc catatccggc acggttagca
     1981 tttacatccc atttcccgtg gcttaaatat ccttcaaact gtttgataag agccgttgct
     2041 tgttcattcg cattgccgtt catttgggca atttgggtat agctccctac attcacgtta
     2101 ctgacaatgt ttgttgggga ggctttatat gctccataaa aatcactcat gcctgagccg
     2161 tctgatttgg ggatagcaat atatctatcg ccaacggcat tttgtgcaga attagcaatg
     2221 ccactggtgt tgagattatt tgctccggct tgattgctta aattggcaaa gcgacggttt
     2281 ccatcaccca tcgcattatc atcaatagca agagcttgtt cgttcatctg ttgagtaatt
     2341 gcagctaatg ctgtattacc gttgattgaa cgttgcagtt ccatttcgag tttaacttgc
     2401 tcaatttctc tgtcaagtaa tttgaggttt ctttctgctt cttctactaa ggaagatttt
     2461 ataacatttg gctcacgcat accggctaac attgctcggc gaatcagtag caatttttcc
     2521 atttctttag aaatagctaa ttcttgcgat aaccttgcac ccagcaaggc tgcatccggc
     2581 gaagcagcaa tggcttctaa tacgcctttt gttacactga ccgttgatgt actcagtgaa
     2641 ttgagttgtt ccggcgttaa actatctaag tgattcagtg ccgcttctag ctttgtggct
     2701 ttttcaatag ttgtttgttc aataaaatgg gcgattcctt tcccggcttt agctccactt
     2761 gaactttgtt cacaagtttc acaggcatca aggaatgttt caccaatcac ttcacttgca
     2821 taggcagcag cctcgcttgg atttttccat tccgtacaaa gcataccatc acagcttgca
     2881 ataggtatat ctcctttttc taatggtcct cgtcctaaag cgaggttata tccggctcca
     2941 acaatgtcag caacgatagc cattggtttt tgatttttac caccacgttg ttcgccacct
     3001 acccaaggga tgcctttttc agcatctttt ttatccattt tcttcttggc tgccattgca
     3061 tcaggctctg tttcagcaat ttcagcggct cggtgtaatc cggccatctt tgctaattta
     3121 ctgtccattg ctaaatcagc aagttggtta gacatggctt cgcaactggt tttgaagttg
     3181 ttgaagtcaa gttttccttg atatagacca ttagaaagaa tgtcatacag ttgaggattt
     3241 gctcgttgga taatcatcgc cgggaggctg gcaactgcac cggttgctga ctcaataata
     3301 ttgccataaa gatctttaaa accttcagta ataccattaa gctggttttt aatggaaagt
     3361 ttaatatcaa agttgccaca agttaaattc gatttccagc caatgccaat cccatattga
     3421 tttggtctgc cacgggaagc tggtgcggaa atggcactac ctcctccaat ggagtagtgc
     3481 atataatcag aaaggacagg gtagtattcc gtgagagcgt tattaccaga aacgcctaga
     3541 ttaccagtcc tatagcctgt tgtattttca ataaaattac taatgctatt gccaacatta
     3601 acggtattac tatttgcgta tccgctcatg gttgtgagca ttatacaagc ggttagaaat
     3661 ttgagacttt ttgctttttt catttattta tcctaatagt gctgataatt taatgagtat
     3721 gtgtactttt ccagtccaca tgacctaaaa aaacttgccc ttgtttttta cagcaagaat
     3781 agggcctcca taatgcccag ctgtaattct cagtattgga gaaactatct gaatgggtag
     3841 cccaatcacc actgtgcgga aagactttag ggtaggattc ggaagtaaat accttaactg
     3901 ttacatctga gggtttatta gcaggactag cacttgccat agctgaaagc agtagtagtg
     3961 gtaaatagta aaatgtctta gcttgcataa atgctccaca aatagagtaa ttcacgttta
     4021 ccttaaaaga tgatttggtt agaagaaatc ggaaattgtt ttttggtttt ggagagtttt
     4081 tgttagtata taagttaatg taacaaggga gagtggatgt atgagcaata gaatacctaa
     4141 agcctgttat gcttacccaa aatcgccgaa
//
LOCUS       DANMGB010000185         4136 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.186, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000185 DANMGB010000000
VERSION     DANMGB010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.186"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(186..1544)
                     /locus_tag="PXG19_002270"
     CDS             complement(186..1544)
                     /locus_tag="PXG19_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6067526.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(1614..2441)
                     /locus_tag="PXG19_002271"
     CDS             complement(1614..2441)
                     /locus_tag="PXG19_002271"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL6067527.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(2455..3543)
                     /gene="aroB"
                     /locus_tag="PXG19_002272"
     CDS             complement(2455..3543)
                     /gene="aroB"
                     /locus_tag="PXG19_002272"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL6067528.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(3567..4088)
                     /gene="aroK"
                     /locus_tag="PXG19_002273"
     CDS             complement(3567..4088)
                     /gene="aroK"
                     /locus_tag="PXG19_002273"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL6067529.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
BASE COUNT         1345 a          933 c          686 g         1172 t
ORIGIN      
        1 gggctaacct agatcaaata aatgattaat tttttatcat tttagaatgc tattatcctg
       61 actgttctta ttccccccca atatgcttgg ttaattaagc aagaattgca aattccccac
      121 aaaatttaac cgcttgtcac taaaaataaa gctgtttgaa aatccattca aacagcttat
      181 agaatttaga gtgaattaaa gaaaatcacc aagataatca ccggaatcac aaagcgaaca
      241 tagttaaacc aaatagtggt aaacatttta cccgcaccta attcctcctt cgcctcttct
      301 tttagaacaa agccaacgaa aatcgcgcta cctaaggcgg ttaaaataaa cagaatattg
      361 ccactaatat aatcgaaggc atcaaaaatg ctcttgccca taacctgcac atcttgcaat
      421 atattgtcac ttaatgctga tggaatatta cccaacagaa aaatagtagc caaagtaata
      481 aaaatagctt tttgacggct aatctttgcc ttctcttgca atgcagtgat aataacttca
      541 taaatagtta acgaggttgt taatgccgcc accactaata gactaaaaaa gataaccgca
      601 aaaactgttc ccccccacat atttgagaac acaatcggca aactttggaa tactaaagtc
      661 ggacctgaat ttggagcaac gccaaagcta aataatgacg gaaaaatcat aaaaccggca
      721 agtaccgcaa ttaaggtgtt catcacccca gtaattgttg ctgtttttac taaattctcg
      781 ctcttatcaa ggtagcttga aagggttatc aacacaccaa aaccaaggct taatgcaaaa
      841 aatacttgac ccagcacaaa cacaaacaat tttggtgtga tttttgaaaa atcgggcatc
      901 agataaaagg caatgccttc agcagccccc ggtaaggtaa tatttcgaac caccatcaca
      961 atcaggaaaa taaacagaat cggcatcaaa tatttcactg aacgctcaat accgtccaca
     1021 atgcctttta ccaaaataaa ataattcacc aatacaaaaa gtgccgtata agcaataatt
     1081 gtcattgggc tattaaaaat actttgttgg aagaattgtt gggtcgtgcc aacggtaaca
     1141 ggttgagaca gatctagtgt ccccgtgagt aagctaccga tataatttaa tacccaacca
     1201 ccaagtacca tatagtaggc aagaatacca aatgctccaa gcaagcccat atagccaaga
     1261 attttccaac ctgaggcaat ttttttacca ttagcaaaac cggcaaaagc atcaatagca
     1321 ttcactctca ttcggcgacc aattacattc tccactaata tcatagggat accaattacg
     1381 atcatcgcaa tacaaaataa aaacacataa gcaccgcctc cgtgttcccc cacaagataa
     1441 gggaaacgcc aagttgcacc aaaaccgact gttgcaccag caacggtcat aatatacgcc
     1501 aatcggttag accaagattg gcgttcttgt tgttgatttg ccatttaata ctccatcggc
     1561 taacaatacc gcttcaacca acaagcggtc agatttttag aaaatattac aaattaaatg
     1621 aagagtgcga ataactcgcc aactttaacc cttgagccca ccttctgccc tattgaacgc
     1681 tgtacctgaa tttgggtaat atcggcagat tgataaatcc tacgggtaaa atcagtatcg
     1741 tgatttgaaa ttaatacggg aacgcctaat cctttcattt ctaaagccag tgttgccaaa
     1801 cgcccttgtt gctctaggct aaaaccaccg ccagcatatt gcgtaaaatt cgtttcttgt
     1861 gctaaaggag cgtaaggtgg gtcgcagtaa atcacataat ccgttaattg attttttgcc
     1921 aactcaaaga cctgttcaaa atccgcacac acaaaagttg ccttttgtgc tttttcagca
     1981 aaaaaacgta gttctttttc tggaaaataa tgggttttat aacgcccaaa gggaacattg
     2041 tacccttttt tctggttata acggcaaagt ccgttatagc caaatcgatt taaatacaaa
     2101 aaaatcaccg agcgacgaaa aatatctttt gagcgattaa actccgcacg gcgtgcttta
     2161 taaaaggctt ctgtattcgc ttgtgggtga agaaacagtt gctttgtttg cgcaatatat
     2221 tcctcaacat ctgctttcac cacgttgaaa agattaatca agtcaggatt aatatcagca
     2281 agaatataac gttcaaaatc tgtattcaga aagaccgaac ctgcaccaac aaaaggctcg
     2341 actaaacaag ccttttttgg caaatgggtt tgaatatctg gaattaagcg atatttaccg
     2401 ccagcccatt ttaaaaaggc tcgatgctta gggtgattca tttcatttta aacattaacg
     2461 ttgggtaaaa cgctcaatag aggctaatac ttgagattct gtggcttgcg atgaaacgta
     2521 agcttcacca agtgatttca ataaaattag gcgtaattga cctgccagta cttttttatc
     2581 tcgccacata taaggtagat attctgccgg ttccattcca tcaggtgaaa ttgttggcaa
     2641 attggctcgg gccaataatt tttccaagcg agcaacctct tgaggactta aatcccccag
     2701 aatacgagat aattccgcag cctctagcat accaaccgaa acagcctctc cgtgtaacca
     2761 tacaccatag cccatacgtg cttcaatggc gtgaccaaag gtatgtccta agtttagtaa
     2821 tgcacgatct cctttttccg tttcatctcg agcaaccacg tcagctttta gctggcaaca
     2881 acgctgaata caatattcca gctcatcttg cttgagactg accaaatcat caatatgctt
     2941 ttcaagccat tcaaaaaaag taacatcaaa gattgcaccg tatttgatga cttccgccaa
     3001 accagcactg acttctcttt tggataaggt atggagcgta ttggtatcaa caatcacaga
     3061 aacaggctga taaaaagccc caatcatatt tttaccgagt gggtggttta ctgccgtttt
     3121 cccgcctact gaagaatcaa cttgagccag taaagtggtc ggaatttgta taaaacgaat
     3181 accacgttgg taagaggcag ctgcatagcc tgcaacatca ccgattacac caccgcctaa
     3241 agcaattaaa gtggtatcgc gattatgatt tttttctaat aatgcggtaa aaatcaaatt
     3301 taatgattct agcgttttat attcttcacc gtcgggaatc aataccgaat caacgtggca
     3361 acccagctcc tttaacgcat ttgttaccac actaagataa tgtgtcgcca ccgttggatt
     3421 tgagacaatc atcaccttat ctccagattt taatgggcta taactagcag gctgatttaa
     3481 taaccctgca ccaattataa tcgggtaacg acgctctttt aattccacat tgacttgtaa
     3541 catatcttag ctcctttctt acctggctac tgtaaattat caatcatatc aataatttga
     3601 tttgccacta ctttagcgct ctgctcgtcc gtatgaatag taatatctgc aatttcttca
     3661 tacaatgggt tacggatttt cgctaactct tccaacgttt tacgggggtc ttctgtttgc
     3721 aataaagggc gttttttatc tcgctgagta cgttcaaact gtttatccac tgtcgtttct
     3781 aaataaataa cgataccacg agccgataac acattacggt tatctttaga taaaatcgaa
     3841 ccaccgccag ttgaaagcac gataccataa ttttgcgtca gttcatttag aatacgttct
     3901 tcacgcttac ggaaaccctc ttcaccttca acatcgaaga tccaatcaat atccgcacct
     3961 gctcgttctt cgatcacact gtcggaatcc ataaattcca tacctaatgt ttgagcaagc
     4021 tgacgaccaa tcgtactttt acctgctccc atcggcccaa tcaaaaaaat attacgtttt
     4081 tcagccatta tttcttcttc attttaaaat ttactaaaca tttgatctgt gaaatt
//
LOCUS       DANMGB010000186         4134 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.187, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000186 DANMGB010000000
VERSION     DANMGB010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4134
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.187"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            30..2039
                     /locus_tag="PXG19_002274"
     CDS             30..2039
                     /locus_tag="PXG19_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL6067530.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            complement(2104..2571)
                     /locus_tag="PXG19_002275"
     CDS             complement(2104..2571)
                     /locus_tag="PXG19_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL6067531.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(2573..4120)
                     /gene="murJ"
                     /locus_tag="PXG19_002276"
     CDS             complement(2573..4120)
                     /gene="murJ"
                     /locus_tag="PXG19_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL6067532.1"
                     /translation="MIVSFMTLISRILGLIRDIVVATILGTGVSADIFLFANRIPNFL
                     RRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTLVAMIASPVV
                     AALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVLNTIGKFGVM
                     AFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMKKEGLLVKPK
                     WAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYYADRLIEFPL
                     GLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGIPAMIGMAVL
                     AQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYANQNTKTPVKV
                     GIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYYKVSHKTVLF
                     VLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYFASILVLGIR
                     KKDFRSA"
BASE COUNT         1218 a          927 c          832 g         1157 t
ORIGIN      
        1 ctaaccattc aaaaatagag gaaatagcat tggatttaat caaaaaatta aacacaggaa
       61 gtacctttag ggtaccgatt ttcctaccga gtttactctt tgtcagcttt gttgccgttt
      121 tctgtatcat ctttccacag caagcacaaa cctcacttga taccatcaaa aatagtctct
      181 tccaacattt tagctggttc tatatttttg caggctctat ctttttcctg tttctaattt
      241 ttctctcttt cagccgattg ggtgatatta aattaggggc agataccgat gagcctgaat
      301 ttggttttgg ctcttggatt gcgatgttat tcgccgccgg aatggggatc gggttaatgt
      361 attttggggt agcagaacct attttgcatt accttaaacc cgtccaacaa aatttaactg
      421 agccggagcg tatgaaagaa gcgatgatga caacgttcta tcattggggt attcacgctt
      481 gggcaattta tggtgtgatt gccttagctc ttgcttattt tggcttcaga tataagttag
      541 cactcactat tcgttccgga ttttatccct tactaaaaca tcgtatttca ggcttctggg
      601 ggcatttaat tgatattatt gccctttgta gcacgatttt cggtttaacg actacacttg
      661 gctttggggt gatgcaggtc agtgctggct ttaacaatct aggtttaatt gaacagagca
      721 attttactgt tcttgcgatt atcgtaacag tagcaatggc tcttgccgtg ttatctgccg
      781 tttcgggcgt aggcaaaggg gttaaaatct taagtgaaat caatctcaca ttagccggat
      841 tgctacttat ttttgtgata atcaccggcc caactctatt acttttctca agcttcaccg
      901 aaaatttagg ctattatttt agctcgctgc ttgagatgag tttccgtacc ttcgcttatg
      961 aaccggaaca tcaaggctgg ctaagcggct ggacggtcct ttattgggca tggtgggcat
     1021 cttgggcgcc atttgttggt ttgtttattg ccaagatctc taaaggcaga accattcgtg
     1081 aatttatttt aggggtgcta tttgttccat cgctgtttaa cattttatgg atgaccagct
     1141 tcggcagctc tgccatttgg ttcgatcaac aaactgccgg tgctttagct gaagtcagcg
     1201 gcaataccga acaactgtta tttacctttt ttgagcaatt accgtttggc tctattgcct
     1261 ctttcgttgc cgtcattgtt atcagtattt tctttatcac ctctgccgac tcggggattt
     1321 ttgttctcaa cagcattgct tcacaaggcg aagaaaatgc accgaaatgg caaagcgtgc
     1381 tttggggagc attattagcc atcttagcgt tatcactact ctattcgggt ggcttggctt
     1441 ctctgcaaac aatgacactg attatcgcct taccatttac cttcattatg ctgattctct
     1501 gtatcggctt atggaaagga ttaatggtag ataaccaata cttcaacaaa aaattctcgc
     1561 aaggtagcca acattgggcg ggtaaagatt ggaaacaacg cttggagaaa atcatcaacc
     1621 caagcaataa gcaagatgtc cgtcacttct ttattaaagt tgccagacca gcatttttag
     1681 aacttatcga ggaatttgaa agctatggct taatcgctaa aatgaatttc accaacgaac
     1741 aaaacccgaa attagagttt gaagtggtga aagaaaattt acgcaatttc atttacggca
     1801 ttgaaagtgt gccacgggaa ttatcggatt tggtggtagg tgacgacaac ctaccgaaca
     1861 ttgagcaaaa taccatttac gagccgatta cttatttctt agacgggcgg aaaggttatg
     1921 atgtgcaata tatgaccaaa gaagagttga ttgccgacgt gctgcaacag tatgaacgct
     1981 ttatcaattt agcgatggac aactcgcacg acttaatgac ggctgatttc aatcactaac
     2041 cccacaagcg gtgagatttt cggaaaaatt tgcaaatttc caacaaaatc tcaccgcttg
     2101 catttaaagc caacgcctta cttggttgca atatttggca taatgtgtgc cgaatttttg
     2161 ggctaaaatt tgctcttccg gcttgatttg gaaataggtt atcaaccata caaacagcgg
     2221 taaaaccagc cacgccaaca ttgcccccaa ccataatgcc cacgcaatca aacctaatag
     2281 taacgaaaga tacattgggt ttcggctttt gcggtaaatg ccccaagtga ccaatttagc
     2341 ggtatgttgt ggtcgaaaag gactgtatgt cgttttcgct tggtgtatga cccaaagtgc
     2401 cgagacggca accgctccgc caattatcgc cacagctaaa ccgctaaaaa atatggctgt
     2461 atgctgataa ttcggcaagc tcaccggcac atattgagct accagccaca ttaaagcggc
     2521 acaaagcaag aaccaagccg gcggcgggat tttcagtttt aatgatttca ttttatgccg
     2581 agcggaaatc ttttttacga atgcctaata ccaaaataga ggcaaaataa ctaccgccgg
     2641 ctaagatcat cagccaaatc agccaataca ctttctgcca cattgtcatt aatgcccaaa
     2701 gttcaatctc aggcgtgaaa taggcaacca acgcccccat tacacaagcg gcgatgaata
     2761 gtttcaacac aaaaagcacg gttttatggc ttactttata gtaaccattt tttgagagat
     2821 tcacatacag caagctcaca ttcactaatg ccgaacacgc agaagctaac gctaaaccaa
     2881 tgtatcccaa aaacggagca aacgccaagc caaagcaaat attacttaag gcggcaataa
     2941 tcccaacttt taccggtgtt ttggtgtttt ggttggcata aaaaccgttt gccagcacgc
     3001 taatcaacat atagctgttt aaccccaagc acattaccca aagtggataa gaggttgcca
     3061 gcacatcttc aaaaccaaat ttaccccgca taaacattgt cataataatc ggctgagcca
     3121 gcactgccat accgatcatt gccggaatgc cgagcaacag caccattctc accccccaat
     3181 ccattgtgtt ttgaaagtgt tctccacgtt ggatttcagt gagttctttg tttttcgcaa
     3241 tacgggaaag gcttggcagc acgacggtgg aaatcgcaat tccaaataaa ccgagcggaa
     3301 attcaattaa gcggtcggca taatacatcc aactaatcga gccggtaatc aaaaacgagg
     3361 caatcacttg gtttagcagt aaatttagct gggtaacgga aacgccaaat aaagccggaa
     3421 tcattaattt acggacttta gtgacacctt cgtctttcca cgcccatttt ggcttaacca
     3481 gtaagccctc ttttttcata aatggaattt ggaataaaaa ttgcaataag ccgcctaaaa
     3541 atacccccca cgctaaggca atatccgggg aatcgaaata atctctgccc cataacgcta
     3601 ccgcgataat cgccacattc agcaacaccg gggaaaatgc catcacccca aacttaccga
     3661 tggtatttaa caccgcaccg gataacgcca caaaggtaat aaaccacaaa taagggaaag
     3721 tgattttgag caaaaaagag gcttgggtga atttttcggc atttggcccg tcgtaaagcc
     3781 aatctaaaaa ccaacctgta ccaaaaagag cggcaaccac aggcgaggca atcattgcca
     3841 caagggtaac aacagttacc aaacctccta atgtacccga tactttggca ataaattctc
     3901 tcgttttgtt tggatcgtta tccgcattat attccgccaa caccggcaca aaggctttag
     3961 aaaatgcccc ttcggcaaac aaacggcgaa gaaaattggg aatacggttg gcaaacagga
     4021 aaatatcggc actcacgcct gtgcctaaaa tggttgccac cacaatgtct cgaatcaaac
     4081 cgagtatgcg agaaattaag gtcataaagc ttacgatcat tcctgatctt aaaa
//
LOCUS       DANMGB010000187         4120 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.188, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000187 DANMGB010000000
VERSION     DANMGB010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4120
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.188"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..394
                     /locus_tag="PXG19_002277"
     CDS             <1..394
                     /locus_tag="PXG19_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067533.1"
                     /translation="ETKKRISLHLKILDFDKGRNTYLAPADLFILDEHLNEFILGNGG
                     DEIEKISKNNKTQFSSTIRENQINFIRALLYMDYGIETPQEVKNAINSGELGRKIEKF
                     RRENPNIENDKNFKFPTSVTLSNWYSKA"
     gene            472..723
                     /locus_tag="PXG19_002278"
     CDS             472..723
                     /locus_tag="PXG19_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067534.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            723..1103
                     /locus_tag="PXG19_002279"
     CDS             723..1103
                     /locus_tag="PXG19_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6067535.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1414..2475
                     /locus_tag="PXG19_002280"
     CDS             1414..2475
                     /locus_tag="PXG19_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL6067536.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2468..2632
                     /locus_tag="PXG19_002281"
     CDS             2468..2632
                     /locus_tag="PXG19_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067537.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2625..3260
                     /locus_tag="PXG19_002282"
     CDS             2625..3260
                     /locus_tag="PXG19_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067538.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3254..3472
                     /locus_tag="PXG19_002283"
     CDS             3254..3472
                     /locus_tag="PXG19_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067539.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3614..4099
                     /locus_tag="PXG19_002284"
     CDS             3614..4099
                     /locus_tag="PXG19_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067540.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1498 a          855 c          789 g          978 t
ORIGIN      
        1 agaaacaaaa aaaagaataa gtttacatct aaaaatactg gattttgaca aaggcagaaa
       61 tacttattta gcacctgcag atttatttat tcttgatgaa catctaaatg agttcatatt
      121 aggtaacggc ggagatgaaa tagaaaaaat atcaaagaat aacaaaactc aattcagctc
      181 aacaatacga gaaaaccaaa tcaattttat tagagccttg ctttatatgg attatgggat
      241 agaaacgcct caagaagtaa aaaacgccat taattcaggg gaactaggca gaaaaataga
      301 gaaatttagg agagaaaacc ccaatataga gaacgataaa aatttcaaat tccctacaag
      361 tgtaaccctt agcaactggt attcaaaagc ctaaaatatt ggaaatttcc gaatctactt
      421 tggaaatttc caaacttcta aaacctactc acctcacaat ctcccccaac aatgcaacta
      481 caaaagacaa taagcacatt cacgcaacca aaccacaggg ggatttatgt aatgacctat
      541 tcagaacaaa gctatttaaa cgtgaaagat gtatgcgaaa tgctacaact caaccgctca
      601 actatttatc gacaaattaa gcaagggatt ttccctaagc caactaagat cggaaaatca
      661 agccggtgga aatttgccga catcaaagca tttttagagc caaaaccaca ggaggcgaac
      721 taatggcagg gctttctatt atttgcccgt tttgtggcaa taccgcacga attagaggca
      781 gttctcgccc tagcctttta agttatcaag cacagctaac ttgttcaaat tgcggacaat
      841 taaaagccga ctttgtaggg cagctaatca acatcaaacg ggccgtattt attgagtgtg
      901 atgaagcaaa tcaatgggat aaacccgaaa atgaactaat caaggaggga aaaattcaag
      961 gcaaagacaa tgctcaacgc ctcaaagaac taagaggctc acagcaagat ttatttgcaa
     1021 aggtgccggg gcaactaccg cccgagaaga tcactccggc ggagaaaatc gccaagcggg
     1081 caaacctttc aaaaacgcat taaacagggg gataaatggc aacaaaaaag ccccgcaagg
     1141 caaaccatac ggagctatta aaatcgcata atgcgaaaga tatgcaaaga aattaaagca
     1201 ggcttgacga tttctgaagg tgttagattc tttctaaagt ctttagggat aggtttattt
     1261 ctagcattgt ttttttattt tttgccgtat ttagcagaat ttataatcgc cgtaaaaaaa
     1321 caactagcaa aaaaatcggc ttactttcaa tgataaaagc aagccgaaat gacaatccaa
     1381 atttttaact ttaaataaag agtacaagaa gaaatgaaag atttatctcc aaatcagaaa
     1441 caatatacgc cattttcggc tataatgcaa aaaaatttaa tggatttatt gacaaaatcc
     1501 gcccgttcgc cttattcttt ctctaccgtt gcaaaatcaa cggcagggcg tgagaaccct
     1561 gaactacata atacggcgaa cagtagcacg cctttaaccc gtgctatttt tattcgtagc
     1621 ttacacacac ctaaagaacg ccgaaataag gcgtgttcgt ctatggtagc gtgtagcggg
     1681 caaggttcgc ccttggctgt ttttggttcg ccgtttgtag cagttttctc accccgttac
     1741 acgctatcgc cctgcaccgt gagaagtgta gccgatagtc ctttaaaatt aacaaacgga
     1801 ctacaaaaaa tgaaccctag ccaaattaca ggcaaaaacc gcctaaactc ttttctattt
     1861 aacaataatc aaaatgatta ttcgctatta tttactaatg caaaacaatc aaccccgatt
     1921 tctgctaaaa taagcaaaaa tcaagattta tgcttgacaa ccctcaatcg ttcgccttat
     1981 gctagccgtg cttttgcaaa atcaaaagcc gagtgtggaa actcgaaaga acatcaggcg
     2041 aacaatagca cgcctttaac tcgtgctttt tttgttcgta gctcacgcac acccaaagaa
     2101 tgccaaaata aggcgtgttc gtctatggta gcgtgtagcg ggcaaggttt cgcccttgac
     2161 tgcttacctg atgttgcagt tttccacccc gttacacgct atcgccctac attgtggaaa
     2221 atgttagcga tagcccctaa aaatcaacat caggagctat caaaaatgaa agcattcgct
     2281 tattcattcc tttgtgctat tcgcacaccc gaaacagata cttatcaaga aaccgtagta
     2341 cgcattattt cagacagcga acaaaacgcc cgttttcagc ttacagccga ttatcgctta
     2401 ctactccccc gccctgttgc aaaaatccgc ctaaattcta ccgcttacac ggtgaaaggg
     2461 gggatttatg cttaattatt ccgatattga acaaatccgc tattttatgg atcaagccga
     2521 agaggcttta gacaataatg aagagttcaa agccgtagca gaacttaaca cagcacaaca
     2581 atttattctg gctttattaa tgaactacga acaagggggt gaaaatgaat aatacaacag
     2641 gacaagctac gcaaagaaac tggcaagaaa ttatcgctaa tttgcagaga ctcagcgaat
     2701 ccggggaaag cacaatcgaa atcgctaaac gctatgaggc attttctaaa accgccgagc
     2761 aaatccaagc cctagtgaat aacaacggca gcgaagccga aaaagaggcg ttttttgccc
     2821 ctgttgagcg tttttatctt ggcttactag aaaccgaaac acgcttaaaa gatgccatag
     2881 ccaaagacga agaaaacgcc caaaaattga aagagcaaaa agcagctaga gaggcagagc
     2941 aaaaaagatg ggacaaccta cctttctacg ccaaagacaa attcagtgat ttaatttgca
     3001 ttgaaagccg agaaacgctt gaagataaat tctttgcgat ctcttgtatg ttcgatgccc
     3061 taaaagccgt acctaatcta ttagaaatag gcttgcgtga agaaggcaaa gacagtgtta
     3121 tagaccgatt agccgaaatg agcaaactct atttactgtt tgtagatgag caattttcac
     3181 tactggcaaa cgaaattcaa agcggtaaat atggcaagtt agacctaaac ggctcacaga
     3241 ataaggggga tttatgctaa cgcaccgcat tacactccct gacggcacag aaattgaatt
     3301 ttttgcagaa accgacaaag aaacatttgc agaaattcaa agggacttag agggcttgaa
     3361 attgccaacc tttgccgagt ttgttgccca agagcggaaa aaacaccgag caaaacaagc
     3421 ggtcaaaaaa gcccgaaaaa ttgcaaaatt agcaagacgg aaaaaccgct agcacctatc
     3481 aaaaagactt attattgcag aaaatcacgc tttaataaaa acgacctata aagcaatccg
     3541 caagaaatgg ttaagtttaa ctgaaaatat gagcggacag gttcagcggg tagcgtgcga
     3601 tagattcgca ataatggaaa ccgccttgca gttagcccaa catttaacag gctggacaga
     3661 ggaagagaac agccaagcga ttttaaaaaa cttcctagac tggaaagaaa ctttcggcga
     3721 aaaaacaaga gaagaaacta aaatagtaga aaccttgcta gattggataa atgaaaatga
     3781 ggcgagtttt atcgagtacc cattcaacca agagcaaaga acaccgccta aagttgccgg
     3841 ctatagaata cttgcgaata acagcactaa aacaaatgag tactttttca tttaccctaa
     3901 gcaatttaaa gaaacgctgg cagaatttcc gctattgatg gcttgcacca agttacacga
     3961 ggcagggatt ttacataagc caccacgccc agaaaaaggc tatgaatttc agtacacaat
     4021 agcccctaaa ataacaggag ggagcaaaaa aagagcttat aaaatcgtac cgatagcatt
     4081 ggaagaagaa aacgagtaat tacagcaaaa gcaagagttt
//
LOCUS       DANMGB010000188         4113 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.189, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000188 DANMGB010000000
VERSION     DANMGB010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4113
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.189"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            25..1200
                     /locus_tag="PXG19_002285"
     CDS             25..1200
                     /locus_tag="PXG19_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL6067541.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLAAELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            1297..2373
                     /gene="fbaA"
                     /locus_tag="PXG19_002286"
     CDS             1297..2373
                     /gene="fbaA"
                     /locus_tag="PXG19_002286"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL6067542.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            2474..3268
                     /locus_tag="PXG19_002287"
     CDS             2474..3268
                     /locus_tag="PXG19_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067543.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            3410..4048
                     /locus_tag="PXG19_002288"
     CDS             3410..4048
                     /locus_tag="PXG19_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6067544.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
BASE COUNT         1282 a          726 c          884 g         1221 t
ORIGIN      
        1 ttttaatcta aagaggaaca aactatgtct gttattaaaa tgactgacct tgatttagcg
       61 ggtaaacgtt tatttattcg tgctgacctt aacgtaccgg taaaagatgg caaagtaaca
      121 tcagatgccc gtattgttgc taccattcca accttaaaat tagcgttaca aaaaggtgct
      181 aaagtaatgg taacttcgca tttaggtcgt ccgacagaag gcgtatttga agaggaaaac
      241 tctttacaac ctgtagttga ttacttaaat gcatcagatt taggtgttcc tgttcgttta
      301 gtgcgtgatt acttagacgg tgttgaagta aacgagaatg aaatcgtggt gcttgaaaac
      361 gtgcgtatta acaaaggtga gaagaaaaac gaccctgagt tagcaaaaaa atatgcatca
      421 ctttgtgatg tgtttgtaat ggacgcattc ggtacagctc accgtgcgga aggttcaact
      481 tacggtgtgg cagaatatgc ccctgttgcg tgtgcaggtc cgttattagc cgctgaatta
      541 gatgcattag gcaaagcatt aaaagagcca caacgtccaa tgttagcgat tgtgggtggt
      601 tctaaagtat ctactaaatt aactgtgctt gattcgcttt caaaaattgc cgaccaatta
      661 atcgtgggcg gtggtattgc caataccttt attgccgcag aaggtcacgc tgtgggtaaa
      721 tcattatacg aagaagattt aatccctgaa gcaaaacgtt tagcacaagt aaccaatatt
      781 cctgttccgg ttgatgtgcg tgtaggtact gaattctctg aaactgcacc ggcaacggaa
      841 aaagcggtga gtgaagtacg agctgatgaa tcaattttcg atattggtga aaaatcgtca
      901 gagcaattag ctgaaattat ccgtaattca aaaaccatcc tttggaatgg tccggtcggc
      961 gtgtttgagt tccctaactt ccgtaaagga acagaagtga tttcaaatgc gattgcagaa
     1021 gcaacggcaa acggtgcatt ctcaattgcc ggtggtggcg ataccttagc tgcgattgat
     1081 ttattcggta tcaaagacaa aatttcttac atttcaaccg gtggcggtgc gttcttagaa
     1141 ttcgtggaag gtaaagtatt accggcagtg gaaatcttag aaaaacgagc taacggctaa
     1201 cagttacaag cggtcaaatt ttgtgaaaat tttgcaagat ttggccgtat attttaacaa
     1261 tgtgcttttg cacatttcat acaaaggaag aaaaaaatgt cattattaaa catcgtaaaa
     1321 ccgggtgtag taacaggcga cgacgtacaa aaagttttcg cttatgctaa agaacacaac
     1381 ttcgctattc cggcagtaaa ctgcgtgggt tcagattcag ttaatgccgt attagaaaca
     1441 gccgctcgtg taaaatcacc ggtaatcgtg caattctcaa atggtggtgc gcagttctat
     1501 gcgggtaaag gcattaagcc ggcttcaggc gctcgtgcag atgtattagg ggcgattgcg
     1561 ggtgcaaaac acgttcatca attagcagaa gaatatggtg tgcctgtgat tcttcacacc
     1621 gaccacgctg cgaaaaactt attaccttgg atcgatggct tacttgaagc aggcgaaaaa
     1681 cacttcgcag aaaccggtcg tccgttattc tcttcacata tgatcgattt atctgaagag
     1741 ccaatcgaag aaaatatgga aatctgccgt gaatatttag cccgtatgga caaaatcggt
     1801 atgacccttg aaatcgaaat cggcgtaacc ggtggtgaag aagatggcgt agataattct
     1861 gatgtagatg aatctaaact ttacacccaa ccttctgaag ttttatatgt ttacgaccaa
     1921 ttaagcccaa tcagcccacg tttcacgatt gcggcagcat ttggtaacgt acacggtgtt
     1981 tacaagccgg gtaatgtaaa attaaaacca tcaatcttag gtgcttcaca agagtatgta
     2041 tctaaagagc gtggtttacc ggcaaagtca ttagacttcg ttttccacgg cggttctggt
     2101 tcttcacgtg aagagattcg tgaagcaatc agctacggtg caatcaaaat gaacattgac
     2161 actgacaccc aatgggctgc gtgggacggt attcttcaat tctacaaagc aaacgaagca
     2221 tatttacaag gtcaattagg taacccgaca ggccctgatg caccaaacaa aaaatactac
     2281 gatccacgtg tttggttacg taaaatggaa gagtctatgt ctaaacgctt agagcaatct
     2341 ttcgaagact taaactgtgt gaacgtttta taatttgcaa aaaattccat aaatcaggcc
     2401 gcttgtataa gcggtctttt tttatttatt ttttgcggta aactatcact ttatttccaa
     2461 gcaccaattt attatggcat tacttgaagt taatcatctg aataagcgtt ttgttgaacg
     2521 tagtagccta tttcataaac aagattttta tgcggtaaaa gaagtttctt ttaccctaaa
     2581 tcgcaaggaa actttagcga ttattggtga aaacggagct gggaaatcta ccttggctaa
     2641 aatggttgct ggtatggttg ggccaacatc tggagaactg atttttagag gaacaccgct
     2701 ttcatttggc gattataaat accgagctaa gcatattcgt atgatgtttc aggaccctaa
     2761 cgatgccttt gatcctaatt ataatatagg acaaatttta gatgctccgc tccgcttggc
     2821 gacagattta aatgaagagg aaagaaatga gcgtattttt aatacgctaa aattggtagg
     2881 aatgtatcct gagcaagcgc tcgttcctat ttcagaggct tccagtgggc aaaagcagcg
     2941 tattgcgttt gctcgtgctt taattttaga accggaaatt attattgcgg atgatacgat
     3001 taattcactg gatttttcag tcaaaacaca attaattaat ttaatgttaa gtgtccagca
     3061 gcgacaaggg attgcttata tttatgtggg gcaaaattta ggtctgatca aacatattgc
     3121 cgataaaata atggtgatgc aaagtggcga agtagtagag tatggcttga cgaaagaggt
     3181 tttactgaat ccgcaacatc aaattacgaa acgtttaatt gaaagtcatt ttggaaagca
     3241 ccttagttcc tatgcttggg caagctaaat ctttactcct gctctaatat gattacttga
     3301 taattttgac ctatttcaat aaatatgcag aataactctt ttcaattatt acattcctaa
     3361 tctttaaatt atagactatc tcaattgttt gagagatagg agaaaagaga tggaattgaa
     3421 acatacgatt gaacagcgta aaactatcaa agcttttaat tcaacaatta agattagtag
     3481 aactgaatta gaagaaatgg tcgctttatc ccagcttgct ccctcaaaag caaatctgca
     3541 accttggcgt tttgtcatta ttgatgttga aattcttaaa gcagcattat caaaaaatgt
     3601 tgcctttaat ggcccacctt gtgaaacagc gtctgctatt gtggtgatat tggcagattt
     3661 gcaatatgaa aaattattag gcgcaattgt tgatcaatcg gtagaaactg ggtgtttgca
     3721 taaagagttt cgtgaacgta aatttgattt tttactaaat cttcataacc aagcaactca
     3781 agcagaaatt agagatcagg tattaattga tactagtttg gcggcaatgc aattaatgct
     3841 aattgccaaa gataagggct atgatactca tgcgataggc gtgtttgagc gccctgctgt
     3901 attaaaatta ttgaatatag atgcagaacg ttatttgcct gttatgctac tagctatcgg
     3961 taaagcagca aacccagcgt tgccaagttg ccgtttacct ctagaatata cggtttcttg
     4021 gaacgatgga caaggtttta aaatataagg tgcaagcggt taaatatctt aattttttgg
     4081 caaaaaattg ttaaaatttg agcgttgtaa ttt
//
LOCUS       DANMGB010000189         4107 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.190, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000189 DANMGB010000000
VERSION     DANMGB010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4107
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.190"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..231
                     /locus_tag="PXG19_002289"
     CDS             <1..231
                     /locus_tag="PXG19_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6067545.1"
                     /translation="KINLAKHGLDFADADEVLSSPYRFDVEVIRNNEFRIQSFAYSFG
                     RLLVLSLAYTEREDYIRVISFRRASKAEREAY"
     gene            287..532
                     /locus_tag="PXG19_002290"
     CDS             287..532
                     /locus_tag="PXG19_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6067546.1"
                     /translation="MAIQAIPASQDFIWDGKDDDERPVTPSEFSIAMKKRGRPAGSKK
                     ELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(550..843)
                     /locus_tag="PXG19_002291"
     CDS             complement(550..843)
                     /locus_tag="PXG19_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL6067547.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(1009..1968)
                     /gene="rpoH"
                     /locus_tag="PXG19_002292"
     CDS             complement(1009..1968)
                     /gene="rpoH"
                     /locus_tag="PXG19_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL6067548.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            2134..2500
                     /gene="ssrA"
                     /locus_tag="PXG19_002293"
     tmRNA           2134..2500
                     /gene="ssrA"
                     /locus_tag="PXG19_002293"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            2775..4001
                     /locus_tag="PXG19_002294"
     CDS             2775..4001
                     /locus_tag="PXG19_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6067549.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
BASE COUNT         1249 a          899 c          818 g         1141 t
ORIGIN      
        1 aaaatcaatt tagccaagca cggattagat tttgccgatg cagatgaagt tctctcatcg
       61 ccctatcgat ttgatgttga agttattcgt aacaatgaat ttagaataca atcttttgca
      121 tattcatttg gacgtttact cgtattatca cttgcatata cagaaaggga agattacatc
      181 agagtaatta gctttcggcg agcatctaaa gcagaaagag aggcatatta ggaatactta
      241 caacaatact ttgaataata aaaatttaga gaaaaaacag ctacttatgg ctattcaagc
      301 tattccggca agccaagatt ttatttggga cggaaaagat gacgatgaac gcccggttac
      361 gccatcagag ttttcaattg caatgaaaaa acgtggcaga ccagctggtt caaagaaaga
      421 attggtttcg ttacgtcttg ataaaagcgt tcttgaagcc tttagagctt caggtaaagg
      481 ttggcaaagt agaattaatc aagttttaag tgattttgta aaacaagttt gaccacaaaa
      541 caaaggcggt taatccgcct ttttcccttc aatatatcgc tcgaagtttt ggatatattc
      601 atctaaattt gcagtgagca tttctttgta ttgctccaca aaatattgaa taacttcttc
      661 tctggaatcg gccaactgct gtttatattc cgccttgctt gccgcaacat aggcgttaaa
      721 tctggcacaa ccaaacaaca tcgcattgct gacttggttt ggggcaatgt tttttaaatg
      781 agcgttggca acgttaataa agccgtctgc tcgctggtag acgctggtag aaagttgggt
      841 caatttgttt atcggtaatg ttaatcatag tatcctcatt tttagtcaaa atacaagcgg
      901 tgctttttgc gtaaaatttt gcacaaacgc ttgcgtttga acgttggctc tgccgacggc
      961 acgaagtgcg agcgtagcga gtaaaaaaat caccgcttgt aggcatttct agccgtctaa
     1021 tgaaatcgct tccttgattt tcttcaatgc ggcattttca agctgtctta cccgctctgc
     1081 cgagatgtta tatttatcgg ctaaatcttg cagtgtggct ttattgtcat ctaaccagcg
     1141 ggttttgatg atgtcttggc tacgttcatc aagggtggct aacgcatagg caagttgagc
     1201 ggttgcctgc ccattatgtt gttcgtcttc caagtcatcg gcgaaattgg agctgctatc
     1261 ttcaatatac atagaaggag cgtagctgtc ttcatcgtca tcaccggcag gcaggtcaaa
     1321 acctaaatct tgtccggtca ttcgagattc catttctcgt acttcttcca ctgaaacccc
     1381 taaatcatcg gcaacttttt tgatctcttc ttcattaaac cacgccaagc ggtttttatt
     1441 tttgcgtaaa ttaaagaata atttacgttg agctttggtg gttgccactt tcacaattcg
     1501 ccagtttttc agcacatatt cgtgaatttc cgctttcacc caatgaaccg caaaagaaac
     1561 caaccgcacg ccgacattcg ggtcaaaccg ttttaccgct ttcatcaagc cgatattacc
     1621 ctcttggatc agatctgcca gcggtaaacc atagcccaaa tagccacgag caatatggat
     1681 cacaaaccgc atatgggaaa ggatcagctg ttttgccgcc tcaacgtctt catcataata
     1741 ataacgctcc gccagttctt tttcttgctc ggcggtgaga atcggatact gatttgccat
     1801 tcggatgtag ctatccaaat tgccctgcgg cacaggcatt gagccggaaa ccaaagccgg
     1861 atgcattgct tctaccgatg tttcttcttc gtctatctca tcaacatcaa tcggctcggc
     1921 atctataatt tcagcatctt caatctcgtt ctcgttaaat tttttcattc tatttctctt
     1981 cactctcagc aaggtttaca ttataacaga gttaaatcta tctggtgtgg gatttgtatg
     2041 attttatttc gagctattca ataccgctaa gttccgccac ttgcaaaact ttttgcaaat
     2101 tcgaccgctt tcctttagaa taccgctact tttggggctg attttggatt cgacgggatt
     2161 ggcgaagccc aaggtgcatg tcgaggtgcg gtaggcctcg taaacaaacc gcaaaataat
     2221 agtcgcaaac gacgaacaat acgctttagc agcttaataa cctgctttaa agccttatct
     2281 cctcagcttc cgctcgtaag acgagggcaa agataagtca cccaaaacga gatcgtgtgg
     2341 acgccgccgc tttaggatcg aaacactaaa ttaaataaag ctagtttatt cattgcgtgt
     2401 ctgtccgctg tgaataagcg aaattaaaga ctagactaaa catgtagtac tgaaggtaga
     2461 gaaatttcgg acgggggttc aaatcccccc agctccacca aattataatc ctatacggtt
     2521 caaccgatac ctaaaaagcc ttgaaaatca atgtttcaag gcttttttat tgtccgttgc
     2581 gtacctatac gatacaatca aatccgaaga ttttaggagt atatttagga gtacgccgga
     2641 atacccccaa aaattcgtac tcctaaaacc actttagagc cttttcaaat aaggctttat
     2701 cgcttttagt tttgtactcc caaacaaaaa atcatactcc taagatttag gctttatact
     2761 cctaaaggtt tactatggct agaaaaatca caccgttaaa cgatacccaa ataagaaaag
     2821 cgaaaccgga agacagccca ttaagagacg gtaacggctt actacttgtt attacctcaa
     2881 attctaaatt gtggcggttt aggtatgaaa gaccgttcac aaaaaagcgg aatgatttaa
     2941 gcattggggc ttaccctgat atttctttag cacaagcgag agaaattaga gaagaatata
     3001 gggcattatt ggctcaaaat atcgaccctc aaacccaccg ccaacaacag gaacaggcaa
     3061 aggccaacga aatcagcaac acttatgaaa atgtagcgtg ggcgtggctg gaacaccgca
     3121 agaccaagaa gaatttttca gacaactacc aaaaagatgt aatcgcctta attaaaaata
     3181 acctcttgcc gcactttgga agaatgccta tcacacaaat aaccgcacca atggcaatca
     3241 aggcattcaa gcaataccaa gacgagggca aactagagaa gttaaaacgg gcaattcaaa
     3301 aacataatga aattatgatg tttgccgtac accgtgaaat gataccgttt aaccctaccg
     3361 ccaatattgc gaaagagttt gatagcccaa cggttgaaca tttcaaaacc attaagccgg
     3421 aagatttagg cgagttttta tacaccttac aaaacgccca aattcattta cagacacgct
     3481 atttaattct gtggcagtta ctcacaatga cccgcccgaa tgaagcggct aaggcaaaat
     3541 gggcggatat agacgaaaaa gccaaactgt ggacgatacc ggcggaaaat atgaagcgag
     3601 gcattgagca taaaatcaca ctctcacgcc aagcaatcgc acttttgcga gagattaaaa
     3661 agctaagtgg cggtaaaacg tatttattcc ctagcgtgaa gaacccacaa acgcacgtca
     3721 atactcaaac cgccaacggt gcgatcaaac gaatgggcta caagggcaaa ttagtggctc
     3781 acggcttgcg ggccatcgcc tccacttatc ttaatgagaa aggctacaat agcgatttaa
     3841 tcgaggttgc cttatcgcat ttaaacagcg accgaatcaa agccgcctat gatagaggcg
     3901 aacgcctaga gcaacgtttt aaactgctcc aagtgtgggc ggattttgta gaggaatgtt
     3961 cgcaaggtag cttaccgcaa tatcatttga aaatagccta gtaaattttc cgccaaaaat
     4021 gaccgcttgt aatgccgtta ggtaaaccgc ctgacggctt ttttatgccc gtaattcccc
     4081 ttgatgaaaa ttctgtaaac ttttcga
//
LOCUS       DANMGB010000190         4078 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.191, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000190 DANMGB010000000
VERSION     DANMGB010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.191"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            38..1015
                     /locus_tag="PXG19_002295"
     CDS             38..1015
                     /locus_tag="PXG19_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL6067550.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            1103..2134
                     /locus_tag="PXG19_002296"
     CDS             1103..2134
                     /locus_tag="PXG19_002296"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6067551.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            2222..2443
                     /locus_tag="PXG19_002297"
     CDS             2222..2443
                     /locus_tag="PXG19_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067552.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            2719..3981
                     /locus_tag="PXG19_002298"
     CDS             2719..3981
                     /locus_tag="PXG19_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL6067553.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
BASE COUNT         1249 a          824 c          911 g         1094 t
ORIGIN      
        1 ttcaataagc tatctgaaaa ataaagggga caataaaatg acaacaaatt ttaaatgcca
       61 agtgcatact attgaattta atgaagatta ccaaccggag caaagcaccc gtttaaccac
      121 caactttgcc aaccttgccc gtggcgaaaa ccgcaaacag aacctgcaaa atgcgattgc
      181 gatgatcaat aaccgtttta acgatttagc gaactgggat aacccgaatg cggatcgtta
      241 ttcggtgaaa ttggatattg tctcactgga tattgatgtg gaaggcaaag gcgagttttt
      301 ccctgcgatt gagtggctga aaacctatgt tatcgactac aaaaccggca aaaccattga
      361 tggcattatc ggtaataact tctcttcttt tgtgcgtgat tacgatttca gcgtattgtt
      421 gttagatcac aataaagaca aaccgcaatt tagcgtgccg gaaggctatg gcgagttaca
      481 cggcaagctg tttaagcatt tattggcatc gcctgaatat accgcaaaat ataaaaaacc
      541 accggtgatc tgtttaagcg tggcaaccac ccgtacctac acaagaacca ctaacgttca
      601 cccaatttta ggtgtggaat atctgcaaga tagttattca ttaactgatg cctattttgc
      661 gaaaatgggc ttaaaagtac gttactttat gccgccaaaa tccgttgcac cctatgcgtt
      721 ctactttgat gagaatgcag atttactcaa tgattacact aacttagagc taatcagcac
      781 gattgccaca atggaagcgt tccaaaaaat ttaccgtccg gaaatttaca atgccaattc
      841 ggtcgcaggg caggtctata aaggcagcct gacttaccaa gattattccg tcaccaaagt
      901 ggaatatgac cgtgaagaac gcacccagtt ggcgatcaaa cagggtaaat acaccgaaga
      961 gcattttatt aaacgttacc aagcgatttt agaggcttgg gcgacggagg aataaacgta
     1021 gggtgggcgt aagcccacca taaaatgaga tataaccaat ggtgggctta cgcccaccct
     1081 actttttata ggaaaattca aaatgagcaa cattcttctc ccaacctcta ccgccggcag
     1141 cctaccaaaa ccttcgtggc ttgccgagcc ggaaaaactg tggtcacctt ggaaatttga
     1201 aggcgaggaa ctacttcaag ccaaacgtga tgccctcctt gtttcccttg ccgaacaaat
     1261 tgcggcaggg attgatattg ttagtgatgg cgaacagacc cgccagcact ttgtgaccac
     1321 ctttatcgag catttggaag gggtggattt tagcaagcgt gaaatcgtgc gcattcgtaa
     1381 ccgttacgat gccagcgtgc cgagcgtggt gggggcagtt tcccgcccga aatcggtgtt
     1441 tgtggacgat gccaaattct tgcgtgcgca taccgacaaa ccaatcaaat gggcattacc
     1501 cggcccgatg acaatgatcg acactctcta tgacggtcat tacaaaagcc gtgaaaaatt
     1561 ggcgtgggaa tttgccaaaa ttctcaacga agaagccaaa gagttggaag cggcaggggt
     1621 ggatattatt caatttgacg aaccggcatt taacgtcttc ttcgatgagc tgaacgactg
     1681 gggcgtggcg gcgttagagc gtgcggcgga aggcttaaaa tgcgaaacgg cggtgcatat
     1741 ctgctacggc tacggcatta aagccaatac cgactggaaa cagaccctcg gcaacgaatg
     1801 gcgtcaatac gaagagagtt tcccgaaact gcaacaatca aaaatcgaca ttatctcgtt
     1861 agagtgccaa aactcccgtg tgccaatgga cttaatcgaa ttagtgcgtg gcaaaaaagt
     1921 aatgctggga gcgattgatg tggctaccaa cattatcgaa acaccggaac aagtggcaga
     1981 tacgttacgc aaagcattac aatttgtcga tgcggataaa ctttatccaa gcaccaactg
     2041 cggaatggca ccactttcac gccaagtcgc acaaggtaaa ttacaggcac tcagccaagg
     2101 ggcagcgata ttgcgtgcgg aattcgcaaa ataattttgc gatctgcatc gaaaatatca
     2161 actttgcttt ttgctcgttt ccagattttc ttccaaaata acaggaaatg acggaggcac
     2221 tatgctaaat ctatttaaaa agccaattaa gaaaagctcc tttgaggctt gggcaaaact
     2281 aatggacgat gtggcaaaag ttgcaatttt agcaattcct gttattctct atggagaata
     2341 ttcactgcta atgaaattta cacactcaat taccttattt gcagtagttt attttttgtt
     2401 agcaacggca agattgtttc gagaaacagc agaggagatg taaatggacg gattgacaat
     2461 cggattattt cttttgcttg cattttcatt tgctgcatac caatgggcaa agcatttaaa
     2521 agatcataat cattaattca atgaataata ctaagcggtc atatttggta aattttttac
     2581 aaaatgtgac cgcttgtttt tctttcactc gaagttaatt tttatataaa taatactatc
     2641 tatgaaacta aaaaatgcgt aaaataacgt gaaatcaact tacgcaaacg tttacttaag
     2701 cttattagga gtccaaaaat gttaaaacgt gatatgaata tcgctgatta cgatgcagta
     2761 ttatggcaag ccattcaaga tgaagatcgc cgtcaagaag aacatattga attaattgca
     2821 tctgaaaact atgcaagccc acgtgtaatg caggctcaag gctcacaatt aaccaataaa
     2881 tatgcagaag gttatccggg taaacgttac tatgggggtt gtgagtatgt ggatattgta
     2941 gaacaacttg cgattgaccg tgcgaaagca ttgttcgggg cagattatgc caacgttcaa
     3001 ccgcattcag gctcacaagc gaatgcagcc gtatatatgg cgttgcttaa tccgggtgac
     3061 actattttag gtatgagttt agcgcacggc gggcatttaa cccacggtgc ttcagttagc
     3121 ttctctggta aaatttataa agcagaacaa tacggcatta ctgatgaagg cttaattgat
     3181 tatgaagcat tacgcaaaca agcccaagaa gtgaaaccga aaatgattgt tgctggtttc
     3241 tctgcttatt ctcaagttat ggattgggca aaaatgcgtg agattgccga tgaagttggg
     3301 gcatatttat ttgtggatat ggctcacgtt gcaggcttaa ttgcggcggg agtttatcca
     3361 aatccgcttc ctcacgctca cgtcgtgacg acaacaaccc ataaaacctt agccggccct
     3421 cgaggtggtt tgattttatc tgcatctggc gatgaagaaa tgtataagaa actgcaatct
     3481 gccgtattcc ctgctggtca aggtggacca ttgatgcacg ttattgcggc aaaagcggtt
     3541 tgttttaaag aagctttaga gccggaattt aaggcatatc agcaacaagt tgtaaaaaat
     3601 gcaaaagcaa tggttgaggt atttaagcaa cgtggttttg atgtggtttc aaacggtacg
     3661 gaaaaccatt tattccttgt tagctttgta aaacaaggtt taaccggcaa agcggcagat
     3721 gctgcattag gagctgcgaa cattaccgtg aataaaaact cggtgccgaa cgaccctcaa
     3781 aaaccattcg tgacttcagg tattcgtgtg ggtacgcctt ctgtgacccg ccgtggtttt
     3841 aaagaagcag aggtgacagc attagccggc tggatgtgcg atgtgctaga tagcattggt
     3901 aaggataatc acgaacaggt gattgcagag actaaagcga aagttttaga catttgtaaa
     3961 cgtttaccag tgtacgcata atctcaactt tacacttttt caagcggtaa tattttttag
     4021 aaatattacc gctttttgtt ttatcaatca ttttctttat ctgttttctg aaaatgga
//
LOCUS       DANMGB010000191         4050 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.192, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000191 DANMGB010000000
VERSION     DANMGB010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4050
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.192"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            9..764
                     /locus_tag="PXG19_002299"
     CDS             9..764
                     /locus_tag="PXG19_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6067554.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDNSSQSCIGNHSLTLLE
                     NINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVADSSKYGKYSLFRA
                     TQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
     gene            complement(845..1015)
                     /gene="rpmG"
                     /locus_tag="PXG19_002300"
     CDS             complement(845..1015)
                     /gene="rpmG"
                     /locus_tag="PXG19_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL6067555.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(1027..1263)
                     /gene="rpmB"
                     /locus_tag="PXG19_002301"
     CDS             complement(1027..1263)
                     /gene="rpmB"
                     /locus_tag="PXG19_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL6067556.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(1495..2232)
                     /gene="radC"
                     /locus_tag="PXG19_002302"
     CDS             complement(1495..2232)
                     /gene="radC"
                     /locus_tag="PXG19_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL6067557.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            2382..3584
                     /gene="coaBC"
                     /locus_tag="PXG19_002303"
     CDS             2382..3584
                     /gene="coaBC"
                     /locus_tag="PXG19_002303"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL6067558.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            3584..3901
                     /locus_tag="PXG19_002304"
     CDS             3584..3901
                     /locus_tag="PXG19_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067559.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3898..>4050
                     /locus_tag="PXG19_002305"
     CDS             3898..>4050
                     /locus_tag="PXG19_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067560.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKN"
BASE COUNT         1246 a          820 c          812 g         1172 t
ORIGIN      
        1 gagtttatat gtctaaaaac cgtctagaac aaattttact attcctaaaa aaccacaata
       61 ttgctaccgt agagcaactg gtaaaagtga ctgaggcttc tcctgcaact atccgccgtg
      121 atttaataaa attagatgaa gaaggcgtcg tgattcgcac acacggaggg gtcagcttaa
      181 accaatttat accgtttcaa ccaacaacaa atgagaagca atttaagcaa attgtcgaaa
      241 aagaacgcat agctgaatat gccgtttcgc ttatttcacc gggaaattct attttattag
      301 atgctggcac tacaacgcta tgcattgcga aaaaaatcgc tcatatgcca cttcgagtga
      361 ttacaactga tctacatatt gctttattac tctctgaata taagcaaata gaattaatta
      421 ttacaggggg acgagtagat aatagtagtc aatcttgtat tggtaatcat agtttaactt
      481 tattagaaaa tattaatcct gatattgctt ttgtgagctg taattcttgg agcttagaaa
      541 aaggagttac agcacctaca gaagagaaag ctaatttaaa aagaatgctc caacaaaacg
      601 ccaaacaaaa agtactggtt gccgatagca gcaaatatgg aaaatactct ttatttcgtg
      661 caactcaact cgataacttt acacaaatta tcacagataa aggactacct attgaatata
      721 gccaagcctt gtcaagtaat gattttaagc tatcattagt ttaatcatac aagcggtctt
      781 ttttcactaa ttttttgtat atgaaaaacc cagcattcgc tgggttttaa atcttaaaac
      841 aaaattattt aatttttgct tctttgtaga taacgtgttt acgcacaact ggatcaaatt
      901 ttttgatttc cattttttca ggcatattac gtttgttttt atctgttgtg tagaagtgac
      961 cagtttctgc tgtagaaact aaacggattt tctcacgagc gcctttagct gccatttttt
     1021 agctccttag attttttcgc cacgagcacg gatttcagct aatactgcat caatgccttt
     1081 tttatcaata atacgcatac ctttcgcagt taaacgtaag gttacgaaac ggttttcgct
     1141 ctcaacccag aaacggtgag tgtgaaggtt tggtaagaaa cgacgtttag tcgcattcat
     1201 tgcgtgtgag cggttgttac caactgctgg acgcttgccg gttacttggc aaactcttga
     1261 catttgaatt tctccaataa ttttaagctt aaaaatggtt cgggcgatct cacaaaaggc
     1321 gttgctcaac caacccctcc gattttgatt gcctcgtcag gcattaaccc gaccacagtc
     1381 tatgtaataa agactgccga ttataccgat ttcatttgtt atattcaagt agaatttata
     1441 tgcgtatctt ttactgtttc aggagaaatg ttaaaggtta cataaagcaa gcggtcattt
     1501 tctatcagaa atttgcaaaa atgaatgctc cttcatctct aatttctctt cctcgaacga
     1561 aaaatagtcc cctttgccga caataatatg atccacaaag cgaatatcaa ccaattcgca
     1621 cgccatttcg atctttttag ttaaacttct gtccgactca ctcggcagac aagaacctga
     1681 ggggtgatta tgagccacaa taatcgccgc ggcattatat tttaacgctc ttttaataat
     1741 ttctcggggg tgaacagcag tttgattaat ggtgccgaag aacatttttt ctttataaat
     1801 caatcggttt tggttgtcca aaaacagcac cataaaaact tcccgttctt cttcctccaa
     1861 ctcggtttgg aaatacataa tcgccatata aggggcttga atcatctcgc taaattccat
     1921 ttgttgagcc agatagcgtt tggtcatctc tttagaggct tgtaactgaa tgtatttggt
     1981 tttgcctaaa ccgtaaattt tgcaaaaatc atcaatattt gcattcagta attggcgtaa
     2041 cgagccaaat gccatcaaca cactctctgc caatgccagc acaggcacag ctttcgtacc
     2101 agtccgtaaa aatatcgcta ataattcgga atcggttaat gaggctgccc cctgtgttaa
     2161 taatttctca cgcggcatca ttgttggctc ttgagaatct tcatcaaaaa aatcgttcat
     2221 tttttcctcc atcaatttag ttaagcataa aagagccaac ctttgcagac aaagggattt
     2281 attcaatttt tcgagcaaga tcgcaaaaat agtgaagttg tgagcaactc cttattccgc
     2341 taaaatatgc aaaataaatc cacgctttaa ggatagtaaa gatgttacaa aacaaaaaaa
     2401 ttttagtcgg catttccggt gggattgcag cctacaaaac cattgaattt atccgccact
     2461 taaaaaaggc aaatgcggaa gtgcgtgtag tgctaacccc agcagcagaa gcctttgtaa
     2521 cgcctttgac cttacaagcg atttccggca atgcggtttc cacttcacta ctcgacccac
     2581 aagccgaact ggcgatgggg catattgagc tggcaaaatg ggcggattta atcgttatcg
     2641 ccccggcaag tgccgatttt attgctcgcc tgcgtatggg aatgggcaac gatttacttt
     2701 ccactctctg ccttgcgact gcaagcccga ttttgcttgc accggcaatg aatcaacaaa
     2761 tgtacaaaca gattgcggtg caagaaaatc tgtctgtttt agtcaatcgt ggcgttcagc
     2821 tcatcggccc gaatagtggc ttccaagcct gtggtgatgt gggggctggc agaatgtctg
     2881 agcctgaaga aatttaccaa gcggtgttgg ctcatttctc caacaatcaa gatttagagg
     2941 gcttaaatgt aaccattacc gccggaccga ctcgtgaggc gattgaccct gtgcgttata
     3001 tcagcaacca cagctccggc aaaatgggct acgcgattgc taatgccttt gccgaacgtg
     3061 gagcaaaggt tacgttgatt agcggtccgg tgaatttacc aacgccgaaa aatgtggaac
     3121 gaattaatgt ggaatctgcg gttgagatgg agcaacaagc ggtcaaattt gcccaaaaat
     3181 ctgcgatttt tattggctgt gcagcggttg ccgattaccg aatggcggca gtctctgacc
     3241 aaaaaattaa gaaaaccgat gccaatgatg aactcacgct aaaattggta aaaaaccccg
     3301 atattatcgc taacgtcgcc aatcttgccg aaaaccgccc ttttgtggtt ggttttgccg
     3361 cagaaacgca aaatgtggcg gagtacgcta aatcgaaact cgaacgcaaa aatctggata
     3421 tgatttgtgc caatgatgtc tcaggcggac aagtgttcgg gcaggatcaa aatgcgttgc
     3481 atttgttctg gaaaaatggt gaaaaaacgc ttcctctggc ggataaaagc aaattggcag
     3541 aaagtttggt acaggaaatt gtaaaacatt atcgagaaaa ataatgaaat tactggttag
     3601 ccattttcat caaggcgaag ggaaatttcc tacattctca gctggtactg ccgttcgatt
     3661 agggagtgaa tgtgtaaact acccaaactg gtttgcctgt gaaattgacg gttggaaaac
     3721 ctttgtgcca agccatttta ttagcgaaga taaattgata tgcgattata acccaacgga
     3781 acttgttgca gcacaaggcg agagagtaga attccttgaa ctacattacc aatgggcaat
     3841 tgtcaaaaga gaaaacgaaa ttggctggct accttgtgaa atcttaaggg taataggatg
     3901 aaaattatgc aacttacgtc aaatcagtat atcaacgaca ttaaacatat tcttttatct
     3961 gctcgccaaa aggcgtatca agccgtgaat tcggcaatgg tcgaagccta ttggaaaatc
     4021 ggtgaacgaa ttgtgcaaga agagaaaaat
//
LOCUS       DANMGB010000192         4040 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.193, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000192 DANMGB010000000
VERSION     DANMGB010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.193"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..186
                     /locus_tag="PXG19_002306"
     CDS             <1..186
                     /locus_tag="PXG19_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6067561.1"
                     /translation="GTLKTKLNEFSLNQNIGRYFKQEVGITLHYKGVSSSVHAGFTKG
                     NTLQEQKFISLKVGYEW"
     gene            complement(725..1417)
                     /locus_tag="PXG19_002307"
     CDS             complement(725..1417)
                     /locus_tag="PXG19_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6067562.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAI
                     RQSACPDILAEP"
     gene            complement(1414..1839)
                     /locus_tag="PXG19_002308"
     CDS             complement(1414..1839)
                     /locus_tag="PXG19_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067563.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(1846..1998)
                     /locus_tag="PXG19_002309"
     CDS             complement(1846..1998)
                     /locus_tag="PXG19_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067564.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            complement(2159..2845)
                     /locus_tag="PXG19_002310"
     CDS             complement(2159..2845)
                     /locus_tag="PXG19_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067565.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(3240..3563)
                     /locus_tag="PXG19_002311"
     CDS             complement(3240..3563)
                     /locus_tag="PXG19_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6067566.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(3676..3894)
                     /locus_tag="PXG19_002312"
     CDS             complement(3676..3894)
                     /locus_tag="PXG19_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL6067567.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
BASE COUNT         1086 a          742 c          779 g         1433 t
ORIGIN      
        1 ggaacactta aaactaagtt aaatgaattt tccttaaatc aaaatatagg ccgttatttt
       61 aagcaagaag tagggattac actccactat aaaggggtat caagttcggt acatgctggc
      121 tttacaaaag gaaatacatt acaagaacaa aaattcattt cactcaaagt tggatatgag
      181 tggtaagctt tatgtaacct gaagctacac ttgaatcggt tcaaacataa tgttactaaa
      241 aaagccttga aacattgatt ttcaaggctt tttaggtatc ggttgaaccg tataggatta
      301 taatttgggc tggggtcatc tgaattgtat cacttcaagc attgataaat aagggttttg
      361 gttaattcaa attttatttg tactcctaaa tatactccta aaattcaaag tgccttattg
      421 cttaggctat tttgtgtaca attattcgga tcgtgtatag ggaaatttag ttcgtagttt
      481 tctatagtag tttaagttta taaagaaaaa atttaaaact ttttgaaatt ttacccactt
      541 tacccactga tttgttggaa gccttgatat ataaggcttt atagccagtg ggaagcaagt
      601 gggttacagt gggttaagtg ggtaactttg atttttaccc actgttagcc acttttagag
      661 gggaaatatt agcggttttg gtagtggtta aagggcaaaa aaggccttaa ttctcatcaa
      721 cggcttaagg ttcggctaga atatcagggc aagcactttg gcggattgca ttttttagga
      781 agcgtttata tctaggcgtt actgattttg acgatagtac gccttttagt atttgttgat
      841 aggcttcatc attaattagg gctttttgaa tgaaataacc ggcttctata tttgccttaa
      901 tctcatctaa cgaatcgatt cttatatggc ggtagaaaat aaagctgtcc cgtgtgataa
      961 attcgtgtgt tcctgccttt aaaatacaag tttcatcaag tgctttcccg tctttaatgc
     1021 ttgagcagtt tacacttaaa atcatatctc ctttaccggt ttcaccatca aagcacggat
     1081 cggtaacctg cttatccagc cctagcaact tcgctttgcc cattgtggct tgagtcattg
     1141 cgttagggtt ttctttctct ctcgccagta tacgagcctc ttccagctcc tttaaaaggt
     1201 catcaacggt taatttatgg cgttctgcgt gttcggcttt cagttcctca atccttgccg
     1261 taatcttgcc gttatccatt agctctttag cttttcggtg gacggtttcg gacttcatat
     1321 cttcggtttc ataggcttgg cggtaggctt cgctagcatt gccggtttca atataagcaa
     1381 agcaaaaagc ctcttgtttt ggtgtgagtt cggtcattct ttcccctccg ccattcgctt
     1441 ttcagcaaag gcataatcga ttttttctcg gtattctttg ctcatctgct cccgtgtaat
     1501 ttcgttgccg tgtcggtcaa taaatgggtt tgttcgttgt gggtggggga gcttgttgat
     1561 ttcactcaat aagtcatcat tcactaatag cggcgtggcg gttagctgtt gatgataggc
     1621 aataatcgct agagcctcta aaaagcccgt agcccctgcc atttcaatat tgatatgatc
     1681 ttcaaggtca agagaaagca caccgataaa aaacggtctg ccgttatcgt ggtgcagtcg
     1741 ttcaattcgg atatgcggaa aatctaaaaa gctcaaggtt gctttgatag gttcattcat
     1801 taaagcagta atacccgcta aattaagctc gtgtttcatt ttggtttatt cctttattct
     1861 ttccgccact tttaacagtt ggctaagttg ttttcttaaa atgccgagtg tgattgaatc
     1921 ggtttcgctt ggcattgcgt tatgttgttg ttccagcttc gctattcggt tgcctagcac
     1981 aattaaaagc tcgggcaatg ggtaagctcg gtttcagaat agaggcttaa aaacgtgaat
     2041 agtctgctaa ataatcaggt gttatctcag aaaaatcgag ctttttccct agtgctgctt
     2101 ctaattcttg tttatttaaa agtaaatttt ggaaatcatt taaattcatt gctgccacct
     2161 agaacggaat atcatcatca aaattaaagc tgcttgattg tttttcatat ccgttattaa
     2221 ttgctacaaa atcaaaggct gcttttaaat tagtattatc tttatcaatg cttggactta
     2281 ttccgccata ttgtcgataa agctgtatat ttttatcttt gagtaagcgg tttaaatcgt
     2341 tagctgtttc actaagactt gagtaatgtt tacttgccca ttctatgaag tcataaacag
     2401 aaatataatc attttgaatt tggctaatct ctgattgtgt ttgcttggtg gttaatttat
     2461 ctaacaaggt tggcgattgt gttttaatca gctgtgttat ttctcttgct gttacgtaat
     2521 aagcatttaa atgttcaaca tcaatagaat tttgagcaat aacatcactt aaaacgcctt
     2581 taggctgatc gaaagcgtct ttgaaatgta gtgttttggg ctcaatagca tagctttcac
     2641 catcttcaaa gagagtgcaa tttacaaaag cattcgtata tattccattt tgctgaaagg
     2701 aaaaaatgag gcttttcaat ttatccgcta tatgtgaaaa aggtttattt gtatagtttg
     2761 ataattcttg tatcagttct tgaaagctga ttttgggctc aatacgattt tcaagcctag
     2821 aaataaattg actgtgatct gccataagcg cccctttaac gtatcccttt actgtgagag
     2881 cgtggaaaga gaaataaagg gctttctcct ttcgtgccgg ttaattactc cgccactatc
     2941 cacgctaatt tgaataaatc cgtatagtta cggattgaac ttgataggtt gtattttgct
     3001 aattattcag ataaattaca agtaataagc tgtgttttat tacagtaaat caaaataggc
     3061 taaagatggg tttccggacg ctataaaaaa gagcattcaa gcggtcatat ttcattaagg
     3121 ttttgcgaat agtgcggaat tttcggagca gtacgcacgc aaggagcaaa taaaaagccg
     3181 tcaatatcca tcaacggcta tttaaaagtg aggttttgac aggtagcaag tgataagttt
     3241 tagccatttt tgacttgtgg aataagcact aaattgaatg cccctagaat tttttgaata
     3301 gtgtcaaagc gtggtttgct gcctttggct agggttttat ataggctctc tctgcctagc
     3361 cctgtttgct tggccagctc cgccattcct cttgctcttg ctacatcgtt caaggcttct
     3421 aaaaattcgt cttggtcgcc ctcttttaac acttccgcta aataggcttg aatagttgcc
     3481 tcatcggtta aaaactccgc cacgtcaaaa gggcgtaaac cgtgcttttc tgctgcctgt
     3541 tcattgattt gtattgtttc cattgctttc tcctgtagtt tttaattcag cccataatgc
     3601 tttcgctttc tctatatcgg cttgctgtgt tgatttatcg ccgccgtgta acaagatata
     3661 aattacattt ccttgttatg cgtaataaat tctatatccg gctcctgttg ctatccgcat
     3721 ttcataaagt ccgcctgtac cggctaaaga tttatgatcg ccaaagttgc cattaatcgc
     3781 attttttatc cgtcttgcta ccgttgcttt tgcgataggg ttctttaaat tctcaagcca
     3841 ttttgaaaaa ttatcggtaa taataatttg attagtggtt tgctctctca tcattgccgg
     3901 cttcttattc tatttattgc ttattgtatc cattaagata cagtgagcaa gggtttttgc
     3961 catttaccca cttttaaccc actttaccca ctgtcatttt ttctttattt ttcagttagt
     4021 tataaaaaaa taatagtgaa
//
LOCUS       DANMGB010000193         4036 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.194, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000193 DANMGB010000000
VERSION     DANMGB010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4036
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.194"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..1573)
                     /locus_tag="PXG19_002313"
     CDS             complement(<1..1573)
                     /locus_tag="PXG19_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6067568.1"
                     /translation="MKKKQQYRKSTINNTNASQQNSGEVLNSVNYQTLLEDYLNKISF
                     SNRQFIDELKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEENRNLER
                     MISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTAL
                     VTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFES
                     AWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIA
                     EKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYY
                     AQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVK
                     LYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEK
                     EAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRI
                     IAVYHNYLDLAIYIDS"
     gene            complement(1577..2848)
                     /gene="wecC"
                     /locus_tag="PXG19_002314"
     CDS             complement(1577..2848)
                     /gene="wecC"
                     /locus_tag="PXG19_002314"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6067569.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
     gene            complement(2863..3978)
                     /gene="wecB"
                     /locus_tag="PXG19_002315"
     CDS             complement(2863..3978)
                     /gene="wecB"
                     /locus_tag="PXG19_002315"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL6067570.1"
                     /translation="MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQ
                     VLELFEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASS
                     LAAYYNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENI
                     AEGTIYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGN
                     GFENICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVY
                     LMRESYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQV
                     TELLNDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
BASE COUNT         1200 a          760 c          728 g         1348 t
ORIGIN      
        1 gagaatctat atagatagct aaatctagat aattatgata aaccgcgata attcgaacac
       61 taggtgtttt ttcctttatt ggttcattat tgattacact acacgcaaat tcccaacgat
      121 tttcataagt atgttttgac attacttcac gtatgcccag catggactgc ttatgccaat
      181 aatagctatc tgtcagtaat ttatggacag caagctcagc ttctttctca ttatttacag
      241 taataacaat gccagggaat tgtgccgtaa tagctttaga tggcgtagat acaacaggtg
      301 tgccgctagc tagaagttca tacacacgtc ttgacatcat tgtggttgat tgagtgatgg
      361 tattaacatt taaaaatact ttaaatttct tatacaactt aactatctca ttgaaattta
      421 ccccttctcg gataagatga gtgtattgtt caggataagc atatttgcca cttgtatctt
      481 tagatgctct atcataaata cagccgttgt aagccaataa tgcaggtaac aacatatcca
      541 tctgtttttt acgattttca tgattttgag cataatatgt tccagcaaaa caaactgttt
      601 ctgtatcaag agaaaatctg ccaattggat tggttacttt aattggggca gcaaaaggca
      661 aagcccaaat atttgaatgc ccaagttctt ttttatattt atctacaacc aattgatctg
      721 ttgtaaaaac ataatctact ttttctgcga ttggcttaaa catctcataa tgcattggat
      781 cttctttatt ccaaaaaatg ataggaatgc ttttatcttt tagtttctga attgcatcta
      841 acaatgcttg agcattatta tgttttaagc ctggtgaagt aaaagcatag atccatgacc
      901 ctttatttgc ctgccaagca ctttcaaaaa aagcaaattt acacgtgctg ccagcaatat
      961 gatcagcata agattttcta actaaaggat accctgtaaa ggcatctgcc cagcataatt
     1021 cagaaatagg atccagtagt gtcaatcctc ttgtcaagtc aatagattga gatcgggcag
     1081 gtgcacttgt aactaatgca gtctgttgct ttggtgtatt tgcaacaggg gaagatggca
     1141 ataatttctg ctgtttctta tccttagcta acttcctgat ttttaataat tctgaaggca
     1201 aggatataaa accactaaat gatttacaag cgtttattaa agcatatcct aactgataag
     1261 aaatcattct ttcaagattt ctattttctt caatgttctt ttgctctaac aaaatattta
     1321 atctggatat gtcttgctgt tgaacatgat tagtttgctc aaggctgctt actttatttt
     1381 ctagctcctt gagcttttta ttatgctcag ttttcagctc atctataaac tgccgattac
     1441 taaaactaat tttatttaaa taatcttcca gtaatgtttg ataattgaca gaatttaata
     1501 cttcgcctga attttgttgt gatgcattag tattgttaat agtggattta cgatattgct
     1561 gtttcttttt catcacttat ctccaaattc ctttagtatc caccacacaa atatcattca
     1621 aaaacacagg tttgactagt ttaaattcgc tatgatccac caaaacaact acaacatcag
     1681 ctacttccag agcttcatca acagaaatca aagaaatgtt cttgttagcc aattttttcg
     1741 gtagctcttc aacattcggc tcaactgcaa atacttgatt tggatacttt tccgccaatt
     1801 tttcagtaat ttttaatgcc ggactttcac gcaaatcgtc aatatcaggc ttgaatgcca
     1861 accctaaaca agcaattttg atttgatcga tagatttacc tgttttttgt aaggcataaa
     1921 ttaccgcttc attcatcttt gagataaccc attcaggttt atgatcgttt acctcacgag
     1981 cagtgcggat aatttttgcc aagtcaggag ttttattcac aataaaccaa ggatctacag
     2041 caatgcagtg tccacctaca ccacaacccg gttgtaagat attgactcga gggtgtctgt
     2101 tagccaaagc aattagttcc catacattaa tatctaggcg atcacaaata atagaaagct
     2161 catttgcaaa agcgatattg acatcacgga aactattttc ggttaattta cacatttctg
     2221 cggtacgggc attggtaact atacagtcgc cttttacaaa agttttgtat aaattgaccg
     2281 cttgcacaga gcatttattt gtcataccac ccacaatacg gtcgttttca atcaattcat
     2341 gcatcacttg tcctggtaga actcgttctg ggcaatgggc gatacgaata tcagaatctt
     2401 cacctgcttg ctgagggaag cttagctctg gacggtactc ggcaagccac tcagccatct
     2461 gttctgttgc accaaccgga gaggttgatt ctaaaatgac taaattacct ttttccagca
     2521 caggtgcaat tgctttgcaa gcagcttgaa tataacttaa atcaggctca taatcctcgc
     2581 ctttaaaagg cgttggtaca gcaattaaaa atgcttctgc tggttcaggt gtcagtgtgg
     2641 cttttaattt tccgctagat acacattggt gaacagcaac atctaaatca ggctcgacaa
     2701 tgtgaatttt cccttgattg atatggtcta cggcgtgctg attaacatct acgccaatta
     2761 catttagacc gtgttgggca aatacagtgg cggttggtaa gccaatatag cctaagccta
     2821 ctactgaaat ggtattaaag ttcgacatac atttatccct tattattgtt ttgattgaaa
     2881 tactgagaga atttgtttca cagctgtgcc atcgccataa gggttgtgag cctcagacat
     2941 ttttgtataa gcagcttgat cattgagtaa ctcagtaact tgtttaataa tttcagattg
     3001 tgcagttcca acaagtttta ctgttccggc ttctacagct tccggtcttt ctgttgtgtc
     3061 tctcattact aataccggtt ttcctaatga tggggcttct tcttgaatac ctccggagtc
     3121 agttaagata aggtaagact ctctcattaa ataaacaaag gagagatagt cgcaaggctc
     3181 aatgagatgc acattggatt tatccgctaa taggcgattg accggttctc ttacatttgg
     3241 gttgaggtgt acggggtaga taaattgaac gtcagggaaa tcagacgcta atgttgaaac
     3301 ggctttacag atgttctcaa aaccattacc gaaattttcg cggcgatgtc cggtgatcaa
     3361 aatagtacgc ttacttttta tataagaaaa tttctcttgt agcgagctta ataaatcaat
     3421 attttcatct aattttttgc aagcgaggaa taaggcatca attaccgtat tacccgttac
     3481 ataaatggtg ccctcagcaa tattttcgtt gagtagattt ttcttggtgc tttgtgttgg
     3541 tgcgaaatgg tattttgcca aagcagctgt taatttgcga ttgccttctt ccggccaagg
     3601 agagtagata ttatgcgttc ttagacctgc ctcaatatga gcgatatcaa tttggttgta
     3661 ataggctgct aatgaagagg caagagtggt tgctgtatcg ccatgaacaa aaatagtagt
     3721 tggtttgtat tcggcaataa caggttgaat tttttctaaa atagcagaag ttacagtaga
     3781 aagtgtttgc ttattgctca taatatccag gtcataatct ggagtaattt cgaataattc
     3841 taaaacttgg tccagcattt ggcggtgctg agcagtaaca cagactttaa aatttagacc
     3901 gcttttctta aagccctcaa ctaagggagc cattttgatt gcctcaggac gagtaccgaa
     3961 gacgatgaga tagcgcattt attactcctt taaaaatata gataaaacta aaatacacta
     4021 gatgtaagta attttg
//
LOCUS       DANMGB010000194         4009 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.195, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000194 DANMGB010000000
VERSION     DANMGB010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.195"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(112..1752)
                     /gene="pgi"
                     /locus_tag="PXG19_002316"
     CDS             complement(112..1752)
                     /gene="pgi"
                     /locus_tag="PXG19_002316"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL6067571.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1785..2033)
                     /locus_tag="PXG19_002317"
     CDS             complement(1785..2033)
                     /locus_tag="PXG19_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL6067572.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2157..2201
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2205..2873
                     /gene="queC"
                     /locus_tag="PXG19_002318"
     CDS             2205..2873
                     /gene="queC"
                     /locus_tag="PXG19_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL6067573.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2866..3288
                     /gene="queD"
                     /locus_tag="PXG19_002319"
     CDS             2866..3288
                     /gene="queD"
                     /locus_tag="PXG19_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL6067574.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3288..3914
                     /locus_tag="PXG19_002320"
     CDS             3288..3914
                     /locus_tag="PXG19_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL6067575.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1201 a          748 c          852 g         1208 t
ORIGIN      
        1 tagaaaaaac tgcttgtgta gaaatggcgc ttagttcagt cctcagctaa aattttagaa
       61 aaaaagcata gagatttttt acctctatgc tttttattgt attgactata tttaacgcca
      121 agccttgaat tggttaatta aaccatttgt ggagctgtcg tggctgttga ttttttcatc
      181 ggtttcgagt tcgggtaaaa tgcggtttgc aagctgtttg cctaactcca cgccccattg
      241 gtcgaaactg taaatgttga acagcacgcc ttgcacgaag attttgtgtt catacattgc
      301 aattaatgcc cctaagctgt acggggtgat tttttgcacc aagatagagt tggtcggttt
      361 gtttccgctg aacactttaa acggcacgat ttcagctact tcttccaacg ttttacctgc
      421 atctaaaaac tctttttcaa ctgtttcttt tgatttaccg aaagctagtg cttcagtttg
      481 agcaaagaag ttagaaagca gtttgttgtg atgatcgctt aacggattgt gagtttgtgc
      541 cggtgcgata aaatcacaag gaattaattt tgtgccttga tgaatgagtt gatagaatgc
      601 gtgctgaccg ttagttcccg gttcgcccca aataatcgga cctgtttggt gagtaaccgg
      661 tttgccgtca cgccccacaa atttaccgtt tgattccata ttgccttgtt ggaaataagc
      721 cgcaaagcgg tgcatatatt ggtcgtaagg taaaatcgct tctgattcag cacctaagaa
      781 attgttattc caaatgccga ctaaagctaa cgtagttgga atgtttttct caatcggcgt
      841 gattaagaaa tgcttatcca ttgcgtgagc accagcaagt agctgctcga agttctcaaa
      901 acctaatgaa agggcaatcg aaagcccgat ggcagaccat aatgagtaac gaccgccaac
      961 ccaatcccag aattcaaaca tattagcggt atcaataccg aatttttcca cttctttggc
     1021 attggttgaa agtgccacga aatgttttgc taccgcagat tcatctttgg cagaatcaag
     1081 tagccatttg cgagctgaaa gggcattggt catcgtttct tgagtggtaa aggtttttga
     1141 agccactaac actaacgtgg tttcaggatt aactttacgc aacacttcag caatatgcgt
     1201 gccgtccacg ttagacacaa agtgcatatt aaggtgattt ttataagggc gtaatgcctc
     1261 tgttaccata taaggaccta gatccgagcc accaataccg atattgatca catcagtaat
     1321 cgttttgccg gtatagcctt tccattcgcc ggaaataaca cgctcgcaga aatctttcat
     1381 tttcgctaac acggcattca cttccggcat tacatctttg ccatcgactg cgattggtgt
     1441 attggcacgg ttacgcagtg caacgtgcaa tacggcacgg ttttcagtgc ggttgatttt
     1501 tttgccggag aacatcgcat tttttgctga ttccaaacca cattcatttg ccagttggcg
     1561 aagtaaggtt aaggtttttt cgttgatcgc attttttgaa aaatcgacta ataattgatc
     1621 ttcaaaacgg agggaatatt tgtcgaaacg gtttggatct tcggcaaaaa gttgaggaat
     1681 agaaaggttg tctgctttat gttgctctaa ggcattccaa gcaaaagttt gcacagggtt
     1741 aattttttgc atctgagttt ccttatacta aattaaaaaa tcgattattc atctgttctt
     1801 tgagtcagtt catcaagacg tttttctaat tcggttaatt tttcacgagt gcggagtaac
     1861 acttgagatt gaacatcaaa ttcttcacga gtgacaacat caagacgggc taattgggct
     1921 tgaaggattt gcttaaattt ttcatctaga tcattaccga cattttttaa gctttgcggt
     1981 aaggcgttat ggagttgttg agcaatcgct tctaagttct tcggcgtgag catatttaaa
     2041 ttccttacta taaatgagta tcccaatttt attgaatttt gggtttaaga gaaagcaaat
     2101 tctttgtaaa atatcacctt tcgcaaaata caagcaaaaa agaccgcttg tattttttat
     2161 ttgtggttcg taaacctccc acacaaaaaa actaaggaca caaaatgact catcaaaaac
     2221 caaaagccgt tgtgattttt tccggcggtc aagactctac cacttgttta ttccaagcta
     2281 ttgctgaatt tggcaaagaa aatgtggaag tcgttacctt tcaatatggg caacgccatt
     2341 cgattgaact tgaaaaagca cgctggattt ctaacgattt aggcgtcaaa caaacgctga
     2401 ttgatacttc ggtgattaaa gcgattacta ccaatgcgtt aatggataat aatgctgaaa
     2461 ttcaacaaca aggcagcaca cccaatacct ttgtggatgg gcgtaatgcc ttatttctgc
     2521 tttataccgc catttatgcc aaagggcagg gcattcaaac tatttttacc ggcgtgtgtg
     2581 agaccgattt tagtggttac cctgattgcc gagatgtatt tgtaaaatca atgaatgtaa
     2641 cgctaaattt agcgatggac tataatttca acattcgcac gccattgatg tatttaacta
     2701 aaaaagaaac ttgggcatta gcagataagc tgggtgcttt tgattatatt cgagaccata
     2761 cccacacctg ttatttaggc gttgaaggtg gttgccacga ctgcccgagt tgcgtattgc
     2821 gagaaaaagg cttgaatgaa tatttagcag aaagggaggt aagcaatgtt taaaattgct
     2881 aaagaattta gttttgatat ggctcatatg ctagatggac acgatggcaa atgccaaaac
     2941 ttacacggac acacctacaa attgcaagtt gaggtggcag gtgagctatt tcaagaggga
     3001 gctaaaagag gaatggtaat ggactattcg gatctaaaag cagtggtaaa acaacatatt
     3061 ttagagccga tggatcacgc ttttatttac gacttacaga gtgagcgtga aagccaagta
     3121 gcacaattat taattgattt aaactccaag gtttatggta tcccaactcg taccacagcc
     3181 gaagaaatgg cgaaatatat gtttgaaaaa ttagagaaag tgggcttacc ggttagccta
     3241 attcgcttgt gggaaacgcc tacttcttat tgtgagtaca gcaaataatg gcggagttaa
     3301 tttcaaaccc tcgttttccg attgttgaga tctttgaaag cttacaaggg gaaggcttta
     3361 ataccggaat gccggctatt tttgtacgtt ttggcaaatg caacctcact tgcccgtggt
     3421 gcgataccaa ttacaatcaa tttgagcaat ggacgttaag cgatattctt gccaaagtaa
     3481 gaagctattc tgcgaaaaat gtgattatta ccggaggcga gccaacgatt cagcctaatt
     3541 tatcgttatt attagaacaa tttaaaaaag agggatattt tttagcgatc gaaaccaacg
     3601 gcttaaaaga ggttccggca caaattgatt atattgcgac cagcccaaag cgaatgtacc
     3661 aagaaaagta tcaacgccgt tgcattgaat ttgcgaatga agtccgtatc gtcgttgatg
     3721 gagaagtaca gggtttctgt gagcaaatag aaagccaaat taaagctgag cattactatc
     3781 tttcaccttg tgaggtagag ggaaaaatga acttgctgga aaccatcacc cagattgggt
     3841 tattaaatca gcgtccaaat aagcctaaat ggcagctaag tatccaaacg cataaaattg
     3901 tggggattga ataagtagaa gttagaagat gatttgtaaa agatcagact tgatctgaca
     3961 attcactcta aaaagtgaga gtttcccgtt tagaatatga gtgtccaaa
//
LOCUS       DANMGB010000195         3951 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.196, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000195 DANMGB010000000
VERSION     DANMGB010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.196"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            153..1355
                     /gene="yedE"
                     /locus_tag="PXG19_002321"
                     /pseudo
     CDS             153..1355
                     /gene="yedE"
                     /locus_tag="PXG19_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            1391..1660
                     /gene="yedF"
                     /locus_tag="PXG19_002322"
     CDS             1391..1660
                     /gene="yedF"
                     /locus_tag="PXG19_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL6067576.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            1760..2104
                     /locus_tag="PXG19_002323"
     CDS             1760..2104
                     /locus_tag="PXG19_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL6067577.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(2167..3114)
                     /locus_tag="PXG19_002324"
     CDS             complement(2167..3114)
                     /locus_tag="PXG19_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL6067578.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
     gene            3297..>3951
                     /locus_tag="PXG19_002325"
     CDS             3297..>3951
                     /locus_tag="PXG19_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067579.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     "
BASE COUNT         1147 a          828 c          781 g         1195 t
ORIGIN      
        1 acctactata aagacgcatt tgtaaaatgt gcattgatat atcgcaagtt ttgtgtatag
       61 gaaatgaact aattactgtg tcaatcagtc cctttcttca tcgttatacc ctcttgcaaa
      121 tccgattaat ctatccttag ttaaggtgtt ttatgttagc gatttggcaa agttttaaac
      181 aaaattatct aatcaaatat tggaatcctg ttgcagcagt gatcgcagct ggtattattt
      241 cagcttatta tttcggcatt actggcactt attgggcggt tacaggggaa tttacccgtt
      301 ggggcggtca tctgttaaat gctttgggtg ttgatgtttc gaactggagc tattttcaac
      361 tcatcggctt agacggcacc atctttaccc gcattgacgg tgtgatgatt ctcggtatgt
      421 ttgccggctg tctttctgcc gcattatggg cgaacaacgt caaatggcat aatcagccac
      481 ataaaaaacg gattatccaa gccttgattg gcggtgcgtt agccggtttc ggagcccgtt
      541 tagcaatggg ctgtaacctc gcctctcttt ttaccggtat tccgcaattc tccgtccacg
      601 cttggttttt cacctttgcg accgccatcg gcacttactt tggggtaaaa gtgactttat
      661 taccgatgtt tagagtgaaa ttagagctga aaaaaggggc agcaaaaatc aaagaaaacg
      721 atccgaaaca agctaatcgc cgtttttggg ttggtatgct catttttatc acttatcttt
      781 ctgcttccct ttatgtaatg caatcctcaa tcaaacttgg ttttgcaatg ctttgcggct
      841 tagcctttgg cttattgatt gaacgagccc aaatttgctt tacctccgct ttccgtgact
      901 tatggattac cggacgggct tatatggcaa aagcaattat tttcggcatt attgccggca
      961 caatcggcgt gttctcttat attcaattag gtgtttcacc taaaattttg tgggctggcc
     1021 caaatgccat tatcggcgga ttattattcg gatttggcat tgtgcttgcc ggcggctgtg
     1081 aaaccggctg gatgtaccgt tcaatggaag gacaggttca ttttatgtgg gtcggcgtag
     1141 gcaatgtagt cggttcaacc ctgctggctt actactgagg cgacttagct ccggtgctta
     1201 cccttgatta tgaaaaaatc aacctactca aagaatttgg gccggttggc ggattattca
     1261 tcaattatgg cttattaatt ctttgcttaa tcgctgtagt ttggtgggaa aaacgcttcc
     1321 ttgccaaagc gaaagcaaaa ttagcaactg cgtaatcttt ttaacttcaa ccaacaagag
     1381 gaaaatgact atggcattca ccgttgtaca aaaactagat aaagatccaa aagacatcac
     1441 gcctgattac accttagata ccttaggcga accttgccct taccctgcga ttacgatgtt
     1501 agaaacaatg ccacagctgc aaaaaggaga gatattggaa ctgttaagcg attgttccca
     1561 atcgattaat aatattccga ttgatactaa aaatcacggc tataccctat taagcgtgga
     1621 acaaaacggc actaaattac gctatttaat tcagcgttaa ttgcaaaaaa ttcgcacaaa
     1681 acgaccgctt gtcgtaaaat agcaactatt taagagcctt gtaacgcaag gctcttttat
     1741 tctaagaggt aaaagaaaaa tgaataaata cgctttactt gcaatatttt ggtttattat
     1801 tggcatttat gctttacttt ttcgtgaaag cactaatgat ataccgcctt ttccacattt
     1861 tgataaagta agccattttg ccttattctt tatccagatc tggttatctg caaacgcctt
     1921 tatccgttca aagaaaggga taccttattt tgggctaata atttttgcct tactctatgc
     1981 tttcaccagc gaatgggctc aggcaacctt cacctcaacc cgagaaggtt cttggcttga
     2041 tgggctagca gatatgctag gagcctcact ttcattattg ctggtaaaat attgcaaaaa
     2101 ataaagcata aaagaccgct tgttatatgg tttagccata ctacaagcgg tcatttttta
     2161 ccaaaattat gccatcaact catcaatcaa ttctttcaca cttttgattt tgttgatttg
     2221 tgaaatgcca ttgcccaccg acacatagcc attgtcaaaa tccccttcta acatacccaa
     2281 acgcattcct gtaccagcgt tcattacctt agcaatctca ctacgagttg ccccattttc
     2341 gctcatttca aagcattttt tcgctaatcc agtcggcagt gaacggtagt aatgtggttc
     2401 ggtacggaat aacagcagat cattggcatt tgcctccaca atccagtttt tcactttttc
     2461 gcttgcacgg cattcttcgg tggcgataaa tgccgtgcca atccacacgc cttcagcccc
     2521 aagcgttaag gcagcctgca ccgctttttt atcggcaata ccaccagcca gcattatcgg
     2581 caaatccacc ttgcccacaa attccgccag cacattaaaa ctgcctacct ctttcatcgg
     2641 caaagtaccg ccctcatcaa aacccgtcag caccaaaata tctgctccca atgcttgggc
     2701 ttttaaagcg tccgccaaat tgggattagg caaacggcag atgattttaa tgccagcagc
     2761 tttgaatttg gcgtaaatct ctgggtcaag ccagccgtta tccagcacca caggcacacg
     2821 ctcttcaatg aataaatcca ccattaacgg aatcagcgaa aaatcataag acaaaataaa
     2881 tggtacgcca aaaggcttat cggtcaatgc cttaacctta cgaatctcgt tacgcatacg
     2941 gtcaagtact tcttcgttgg aagttggatt ggtggtttgc cctgcgtgtg gggctaaaaa
     3001 accaagccca ccagcctcgg caacgcttgc taccagatga gcgtccgtca gccaagacat
     3061 tggcgcttgg acgatagggt gcttgatatt taagatttgg gtaatgcggt tcattggatt
     3121 ttcctgtttg aataaaaaga attggacgta gtttaatggt tttggatttg agagggaatg
     3181 cgtgaaaatg ggaaggtggt tttcggattt ggaaaattat caatgctaaa atacttgaaa
     3241 tacacacgcc aatcctcata tcaacaaaat tgaatattta attatggtaa aagaaaatgt
     3301 ctattagatg ggaaaacatc aagcccttac aaggttctca aaatagtgct tttgaagagc
     3361 tagtatgcca attggcacgc caagaattta aatctcaagg aaaatttact cgaatttctg
     3421 cacctgatgg tgggattgaa gcaatgtgtg aattgccaga tggttccgta tgtggttggc
     3481 aagccaaata ttttttaagc tcattttctt catcacaatg gcaacaaatt gaagattcct
     3541 ttaaagaatc tttaaaaaac tatcctaaac taaccaaata ctatgtttgt gtggcaaccg
     3601 atagagcaaa tgccaatgta tctggaaaga aatcatttct taccaaatgg gaggagtata
     3661 cccaaagatg gaaagacttt gctcaatcac aaggtcgtga aatagaattt gaattttggg
     3721 gaagttttga attatctgac ttattatcaa aacctgaaaa tgcaggcaaa aaattctttt
     3781 ggtttaacga aagcgaatta tctgacaaat ggtttgaaca atacaatcaa caagccatta
     3841 ataatcttgg tgtgcgttat acacctgaaa ttaatgttga tttacctatt gcaatgcaat
     3901 tagaaagctt ggcaagaacc caaattttca aaaaacatct gagtgatgaa t
//
LOCUS       DANMGB010000196         3920 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.197, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000196 DANMGB010000000
VERSION     DANMGB010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.197"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(25..1564)
                     /locus_tag="PXG19_002326"
     rRNA            complement(25..1564)
                     /locus_tag="PXG19_002326"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(1918..3879)
                     /gene="recD"
                     /locus_tag="PXG19_002327"
     CDS             complement(1918..3879)
                     /gene="recD"
                     /locus_tag="PXG19_002327"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL6067580.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1035 a          990 c          729 g         1166 t
ORIGIN      
        1 acttgctgtc gttctcgatt ttggtaagga ggtgatccaa ccgcaggttc ccctacggtt
       61 accttgttac gacttcaccc cagtcatgaa tcataccgtg gtaaacgccc ccctttcggt
      121 taagctatct acttctggta caacccactc ccatggtgtg acgggcggtg tgtacaaggc
      181 ccgggaacgt attcaccgca acattctgat ttgcgattac tagcgattcc gacttcatgg
      241 agtcgagttg cagactccaa tccggactta gacgtacttt ctgagattcg ctccccatcg
      301 ctggctcgcc gccctctgta tacgccattg tagcacgtgt gtagccctac tcgtaagggc
      361 catgatgact tgacgtcatc cccaccttcc tccggtttat caccggcagt ctcctttgag
      421 ttcccgacct aatcgctggc aacaaaggat aagggttgcg ctcgttgcgg gacttaaccc
      481 aacatttcac aacacgagct gacgacagcc atgcagcacc tgtctcatgg ttcccgaagg
      541 cactctcata tctctacaag attccatgga tgtcaagagt aggtaaggtt cttcgcgttg
      601 catcgaatta aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc atttgagttt
      661 taaccttgcg gccgtactcc ccaggcggtc gatttatcac gttagctacg ggcaccagag
      721 ttaaacccca atccccaaat cgacagcgtt tacggcgtgg actaccaggg tatctaatcc
      781 tgtttgctcc ccacgctttc gcacatgagc gtcagtacat tcccaagggg ctgccttcgc
      841 cttcggtatt cctccacatc tctacgcatt tcaccgctac acgtggaatt ctacccctcc
      901 ctaaagtact ctagttgtcc agtctgaaat gcaattccca ggttaagccc ggggctttca
      961 cacctcactt aaacaaccgc ctgcgtgccc tttacgccca gttattccga ttaacgctcg
     1021 caccccccgt attaccgcgg ctgctggcac ggagttagcc ggtgcttctt ctgtgattaa
     1081 cgtcaatcga ctgttctatt aaaacaatcg ccttcctcgt caccgaaaga actttacaac
     1141 ccgaaggcct tcttcattca cgcggcatgg ctgcatcagg gttcccccca ttgtgcaata
     1201 ttccccactg ctgcctcccg taggagtctg gaccgtgtct cagttccagt gtggctggtc
     1261 atcctctcag accagctaga gatcgcgggc ttggtgagcc tttacctcac caactaccta
     1321 atcccacttg ggctcatctt atggcaggtg gccaaatggt cccacccttt agtcctaaga
     1381 cattacgcgg tattagctac cgtttccagt agttatcccc ctccataagc cagattccca
     1441 agcattactc acccgtccgc cactcgtcac ccaaggagca aactcctatg tgctaccgtt
     1501 cgacttgcat gtgttaagcc tgccgccagc gttcaatctg agccatgatc aaactcttca
     1561 attcaaaaag tttaatcgct caatactgct gacataaaat cgcacttcca aatttaaacc
     1621 taattaaaat taagttaaaa gaaagtaatg aatttctagt tagcacctat taagacttca
     1681 aaattaaaaa aatgtttttc aatcaagtca atcaacaagt gcccacacag attgtctgat
     1741 aaattgttaa agaacaaaaa gaaacgacgc actggaaatc aattttaaat cgttcacaac
     1801 agtgcgtcgt tgtgtgctgc gtattatagg gaaaaacaaa aacaacgcaa gcggtttttg
     1861 taaaaaattt gaaaaaaatg accgcttgcg tatttttacg gcaaaacgag tattaattta
     1921 gctaaacttg cctcttattt gttcttttag cccactttgt ctttcggttt tggcaccaac
     1981 actgtatttc caaacttttt cgctaccaaa taaggtaaat ttatcttttg cccttgtgat
     2041 tgcggtgtaa atcaactctt tcgtcagcac cggggaaatc gaatggggca acaccaatac
     2101 cgtatgttca aattcagaac cttgcgattt atgcacagtc ataatataag ctgcttcata
     2161 atttgaaacc ctacctagag gcaaactatg gtgttctcta ttttcctgta aggaatcaaa
     2221 ataaactcgg ctttctccat tttcgtccgg caaaatgatg ccgacatcac cgctggctat
     2281 gctatttatc ggcatatttt ctgtcattaa aatcggtttt ccgatatagc ggtctcggct
     2341 atgattaaat ttcactaagc tagctttccg caagccttcc gcaatcgcca tattaagacg
     2401 ttcaaccccc agttcactta cccttaaggc tgataaaatt cggacttttt gaaatttctc
     2461 aaaaatcgct ttcacactca ctgaatctgg atttttctcc cgtttttgaa ccgcttgtaa
     2521 ataatcacga taaagttcaa ccgctttatc caccaccatt tgcacacttt tttcaatcca
     2581 gcttgattta tccgttgtct ctttcgtttc cggataacag aaattttcta acttatcact
     2641 gtttttatat ttgtcgaaaa tctcccacga aaggttaatt ttttgatcat ttactgcatt
     2701 tgcaagctct ccaatccagg ctttttcgcc aaatcgatag ctatgtttta agtgagataa
     2761 acaatcacca atcggcaacg cattaccggc ttcaatttgg tagtcggtaa cggcttttaa
     2821 gtaatcgcaa tgggattggc tataaccatt atcaataaaa gagccaagtt cccccataat
     2881 tgaaccagct tccacagaag caagctgatc tttatctccc agcattatca agcgagagtt
     2941 tggtttgagc gcttgaacaa ctttctccat cattgataaa tcaatcattg aagcctcatc
     3001 taatacgacc aaatcatagt gccacggatt tttggtatga tatttggttt tctcagttaa
     3061 tggtctcgca ccaagcaagc gatgaatagt cactgcttca gttggaatag agcgttttaa
     3121 ctcctcagat aacccctttt cttccgccaa cttgctttcc agcgactctt tcattcttgc
     3181 tgctgctttt ccggttggtg cagccagagc gatttgcaaa tatggtttct gtagtgcttg
     3241 ctgttttaat tgcagcccga gtaataattt tactaccgta gttgtttttc cggttcccgg
     3301 cccacctgaa attaagctaa actgcttttc taatgctgtt gcaacggcaa tcttttgcca
     3361 gtcgatagtt tgagctttcc cagtgaatag ttggttgaga atgctttggt ttaattcggt
     3421 atttgcaaat ttttccgaaa aatcaaccgc ttgttgtaaa taaccggcaa tgcgatgctc
     3481 cgcttgccag tagcgataaa aatagagcaa gctgttttgg aataacatcg gtttaattgt
     3541 ttcgggagaa tagctaaaag cgatatgatt tttcagcaca ctctgccatt caagcggtgg
     3601 aatttgctca attttttgca aaatttgttc gagcaaatga taagtttgtg gcttgctatt
     3661 taattcaaaa agagaagaaa gactgagatt ttccaaacgt aatgccgtat gcccaagtcc
     3721 cacttggtaa gaaaccaacg cagcggctaa cacagctaaa tcttgctcca aaggcgaata
     3781 cccatagggt ttctgcttat tatcaataaa acgggcaaat tgataattta agtcagaaat
     3841 cgccttttct tgtttaagtt ccaataataa attcagcata atcaaacctt aaatcgacca
     3901 cctaacatta agtgataata
//
LOCUS       DANMGB010000197         3853 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.198, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000197 DANMGB010000000
VERSION     DANMGB010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3853
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.198"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            185..544
                     /locus_tag="PXG19_002328"
     CDS             185..544
                     /locus_tag="PXG19_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067581.1"
                     /translation="MKTFSIHTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINNV
                     WVQISRIRKRFKCPEQAKSFAEQWKQTETPAFLQHQINRQALREELSNLEQRKIQKNG
                     MLEVIEYRISQIKELLK"
     gene            541..1020
                     /locus_tag="PXG19_002329"
     CDS             541..1020
                     /locus_tag="PXG19_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067582.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKALNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYTFEQIEEDPEQVKPKPSKPKRK
                     PFTPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNALAEMVKRTQEANNAKHA"
     gene            1154..1366
                     /locus_tag="PXG19_002330"
     CDS             1154..1366
                     /locus_tag="PXG19_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067583.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFLLVEEKIIDVLENNGFETVAT
                     ILAGSDGWCNAINAYLAEQNKHRNEF"
     gene            1379..2302
                     /locus_tag="PXG19_002331"
     CDS             1379..2302
                     /locus_tag="PXG19_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HDL6067584.1"
                     /translation="MTNQNQQVAQKQDKFPIKTLFESPNVKQKLQELLNKNAATFTTS
                     VLQIVNSNSMLRNAEPMSVFNAACMAATLNLALQNGLGFAYIVPYQNRKEKKTEAQFQ
                     LGYKGLIQLAQRSGQFKRLVAVPVYEKQLLAEDPINGYEFDWKQKPAKDEKPIGYYAY
                     FKLINEFTAEIYMTTQEVHDHANRYSQTYRKGYGVWHDNFEAMALKTVMKLLLSKQAP
                     LSVEMQQAVLADQAVVKDVENAEFAYPDNEIQEAEFTELKVSDEVFEKCKQTIINKES
                     TLQDMCDNGYEFNKEQYAELEKLENEQQSNV"
     gene            2295..2957
                     /locus_tag="PXG19_002332"
     CDS             2295..2957
                     /locus_tag="PXG19_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation protein TolB precursor"
                     /protein_id="HDL6067585.1"
                     /translation="MYKFKPRCSMLHQLMSEPRTKADREAGLISDTAKAAVREVAKFD
                     LFGYQSFDGNKYTEKGNQLEEQAIKLSGFTRGLVLKKNTERRENDWISGECDIYVPSR
                     KLIIDTKCSWDIGTHPFFADEAIAKAEKAGYDIQMQGYMWLWDCEEAQIDFVLFPTPI
                     DLIGTYESTEKLIDLVEQIPQQKRITTVTVKRDEAIIAKIKDRVKAASKYYDKLIQEA
                     MN"
     gene            2998..3843
                     /locus_tag="PXG19_002333"
     CDS             2998..3843
                     /locus_tag="PXG19_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067586.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAITTFGTVFAGTLGGYIE
                     KESNLKHLGNAWVYDNAKVYDSAEVYGNAKVYDSAEVYDNAKVYDSAEVYGNAKVYDS
                     AEVYGNAKVYDSAEVYGNAEVYGNAEVWGSAKVWGNAEVWGSAEVYGNAKVYGNAEVW
                     GSAKVWGNAEVWGSAEVWGSAEVYGNAKVYDSAEVWGSAKVRSFAVLSERKMIFWASN
                     VGTENGTLTVYNGKDGLLVTRGCFTGTVEEFLAKSDEVHDEKTKREYQLLIEVAKSRI
                     LGEAT"
BASE COUNT         1356 a          824 c          851 g          822 t
ORIGIN      
        1 ataacaatga aaaagaatgt aaccaaaata aaataagaat tgatgtatac aacaaatgtt
       61 ccggaatgat gattgagctg gagggtattc ttacagaata caagctaact cttgatgagt
      121 gcgtagacga attcttagga aatgaccatt gtttgagtga atttattacc aaaggaacga
      181 aaaaatgaaa acttttagca ttcacactag tgtatggcac gacagctcaa ctaaagggtt
      241 tcgacacaac atcaaacata aacgccacga ctgctggaga gcggatatcc gcataaaaca
      301 aaaaatcaat aatgtgtggg tgcaaatctc aagaatacgc aagcgtttca aatgccctga
      361 acaagcaaaa tcctttgctg aacaatggaa acaaactgaa acacctgcat ttttgcaaca
      421 ccaaatcaac cgccaagcat taagagaaga attatcaaac cttgagcaac gtaaaatcca
      481 aaaaaacgga atgcttgagg tgattgagta tcgtattagc caaatcaagg agttactgaa
      541 atgaaacgca ataaagtaga aagctatact atccgcttat taaaaaataa tcatacaaaa
      601 cgctacttcg gagaagttat attaaacggc ataaaagaaa tcagcacggc agagatgatg
      661 tctgaaatta acgctattaa ggcattaaat aagcgtattg aagctctgaa taaaaccaaa
      721 gccgttaatt tgcctaatta tcctgaaatc aggggtcatc agcctattat gtacaattac
      781 acttttgaac aaattgagga agatcctgaa caggttaagc ctaaaccatc aaaaccaaaa
      841 cgcaaacctt tcacacccta cgggctaaac ggctactttg tggatagcaa cggcaatatt
      901 cgcctgcacc tagacagacg agcaagtgcc gaaacaatta cccttgaaac tgatttcttc
      961 aacgctcttg ccgaaatggt aaaacgtaca caagaggcaa acaatgctaa acatgcttag
     1021 acaatggatt acatacggct tatacgccct gctttttatg gttgccatca ccctcctaat
     1081 gcaatgaaga gcttatccct gaaagcacct gcaagcctga aacttgcgaa tttaaagtaa
     1141 cggagaaagt gtgatgatag gatacgaaga ctacacagat gcttcacttc aaccagaaga
     1201 agaccctagc gaagaggctt tcctcttagt ggaggagaaa attatagatg tgctagaaaa
     1261 caacggcttt gaaaccgttg ctactatcct agccggttct gatggctggt gtaacgcaat
     1321 taatgcctac ctggccgaac agaacaaaca cagaaatgaa ttttagagga ataagataat
     1381 gacaaaccaa aatcaacaag tagcacaaaa gcaagataaa ttcccgatta aaaccctatt
     1441 tgaaagcccg aatgtaaagc aaaaactaca agagctttta aacaaaaacg cagccacgtt
     1501 tacaacaagc gtgttgcaga ttgtgaatag taactcaatg ttacgcaatg ccgaaccgat
     1561 gagcgtattc aacgccgctt gtatggcagc aacgcttaat ttggcattac aaaacggctt
     1621 aggttttgcc tacattgtgc cgtaccaaaa ccgcaaagag aaaaaaaccg aagctcaatt
     1681 ccaacttggc tacaaaggtt taattcaact ggctcaacgt agcgggcaat ttaaacgcct
     1741 tgttgccgtg ccggtgtatg aaaaacaact gcttgccgaa gaccccatca acggttacga
     1801 gttcgattgg aaacaaaaac cggctaaaga tgaaaaaccg attggctatt acgcttattt
     1861 caaactgata aatgaattta ccgccgaaat ctatatgacc acgcaagaag tccacgacca
     1921 cgccaaccgc tacagccaaa cctaccgcaa aggctacggc gtatggcacg acaactttga
     1981 ggcaatggct ctcaaaactg tgatgaagct cttgctttcc aaacaagctc cattatcagt
     2041 ggaaatgcaa caagcggtct tggcagatca agcggtcgta aaagatgttg aaaatgcaga
     2101 atttgcctac cctgacaacg aaatccaaga ggcggaattt accgaactca aggtcagcga
     2161 tgaggtgttt gagaaatgca aacaaaccat catcaacaaa gaaagcacct tgcaagatat
     2221 gtgcgataac ggctacgagt tcaacaaaga gcaatatgcg gagttggaga agttagaaaa
     2281 tgaacagcaa tcaaatgtat aaattcaaac cccgttgctc aatgctccac caactaatga
     2341 gcgaacctcg caccaaagcc gaccgtgaag ccggactgat ttccgacacc gcaaaagcag
     2401 cggtgcgtga agtggctaaa tttgacctat tcggttatca atcctttgac ggcaacaaat
     2461 acactgaaaa aggcaatcag ctagaagaac aagccattaa gttaagcggt tttactcgtg
     2521 gcctggttct aaaaaagaac accgaacgcc gagaaaacga ttggatttca ggcgagtgtg
     2581 atatttatgt accaagccga aagctgatta tcgatacaaa atgcagttgg gacatcggca
     2641 cgcacccgtt ttttgcagac gaagccatcg ccaaagccga aaaagccgga tatgacattc
     2701 aaatgcaagg ctatatgtgg ctgtgggatt gcgaagaggc tcaaatcgat tttgtgttat
     2761 tccctactcc aatcgacctt atcggtactt acgaaagcac agaaaagctg attgaccttg
     2821 tggaacaaat cccccaacaa aaacgcatta ccaccgtgac ggttaagcgt gatgaagcca
     2881 tcattgccaa aatcaaagac agagtgaaag cagccagtaa gtattacgac aagcttatac
     2941 aagaagctat gaattaattc aatcgccccg aaaggggctt tttaataggt gacaaatatg
     3001 acaacccaaa agaaatacga actcctccaa aacgacacaa tcaaccacaa cggcagaaca
     3061 ctctaccgca tcaaagccat aaccacattt ggaacagtct ttgcaggtac acttggcggc
     3121 tatattgaaa aagagagcaa cctaaaacat ttaggaaatg cttgggtgta tgacaacgcc
     3181 aaagtgtatg acagcgccga agtgtatggc aacgccaaag tgtatgacag cgccgaagtg
     3241 tatgacaacg ccaaagtgta tgacagcgcc gaagtgtatg gcaacgccaa agtgtatgac
     3301 agcgccgaag tgtatggcaa cgccaaagtg tatgacagcg ccgaagtgta tggcaacgcc
     3361 gaagtgtatg gcaacgccga agtgtggggc agcgccaaag tgtggggcaa cgccgaagtg
     3421 tggggcagcg ccgaagtgta tggcaacgcc aaagtgtatg gcaacgccga agtgtggggc
     3481 agcgccaaag tgtggggcaa cgccgaagtg tggggcagcg ccgaagtgtg gggcagcgcc
     3541 gaagtgtatg gcaacgccaa agtgtatgac agcgccgaag tgtggggcag cgccaaagta
     3601 agatcatttg cagttctttc tgaaagaaaa atgattttct gggcgagcaa tgtcggcaca
     3661 gagaacggta cattaaccgt ttacaacgga aaagacggac tgcttgtaac aagaggctgt
     3721 ttcaccggca cagtcgaaga gtttttagca aaatccgacg aagttcacga tgagaaaacg
     3781 aagcgggaat atcagctact gattgaggta gcaaaaagca gaattttagg agaagcgact
     3841 taatcagtcg ctt
//
LOCUS       DANMGB010000198         3826 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.199, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000198 DANMGB010000000
VERSION     DANMGB010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3826
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.199"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXG19_002334"
     CDS             complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXG19_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL6067587.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXG19_002335"
     CDS             complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXG19_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL6067588.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXG19_002336"
     CDS             complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXG19_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL6067589.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3255..>3826
                     /gene="rsmD"
                     /locus_tag="PXG19_002337"
     CDS             3255..>3826
                     /gene="rsmD"
                     /locus_tag="PXG19_002337"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL6067590.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVV"
BASE COUNT         1069 a          922 c          694 g         1141 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac caagttccta ggaactggtt tttatctgca
       61 attatttctc taaaaacaac cgcttgtatt agcctctact accaatacgg aaaatatttc
      121 gcattgtcgc aatttttgcc gacagccagc caataaacac acaaagcacc actaagaaga
      181 aggcttcgct gaaatctaat ccgttcagtt caaattgtac ggtaaacata tcagtcacat
      241 acttcactac accggtgaaa tagctaatcg ttaccgcact aaacagcacc gctaacaggc
      301 tgccaaacaa gccgtaaatc atacctgtgt ataaaaacgg acgggcaata aagtgatcag
      361 ttgcccctaa aatttgttgg acttcaatcg ctgctttgct attggcaaca tcggttcgca
      421 cactgtttcc aatcactaaa aaaactgcca acagcattaa taaggtacac accaccgcaa
      481 tacgagcaat cagccaagtt agagcagtta atttttccag ccagccgtta tctaaacgaa
      541 cctcctgcac ccctttaatt tgttgcaaac cgttgcgtag ctccaccatc gtatcagcat
      601 tattaaaatt tgctttcggt tttaaggtaa cgaccgcagg caacgggttt tcatctaaaa
      661 tatctaacgc ttcaccaaag cctgaccaag aacgaaattc gtctaaactt tgttggcgag
      721 aaatatagtt aaatgactca attttatccg tctcaaaagc acgaatgcga tcaacaacgg
      781 tattcacatc gtgttctgcc aaatttttgt gcagataaac ggttaattgt ggctcagggt
      841 aaaattgtgt tgctgcctcg tgggtattct tccaaagtaa ataactcacg gttggaatcg
      901 taagtgagac cgcaatcacc agcaccgtca gaaaagtgcc gagcttgcgt tgcattaaat
      961 cttgccaaac cgctcttaaa gagtagttgg tttgagcacc taatttacta aatgaacgaa
     1021 tcataatatt tccttaaaat ttaagatgcc cttgctccag cactaaacac ggctttggac
     1081 gctttgaaat aatattggta tcgtgggtgg caatcagcac cgttgtgccg gcttgattaa
     1141 attcctcaaa caaacggaaa atttcaaacg agagcttttc atctaagttt ccggttggct
     1201 catcggctaa taacagcgtt gggcgatgaa caatggccct ggcaatatcg acacgttgtt
     1261 gctcaccgcc ggaaaggtgc aacggcagat agttcgcttt atctgccaag ccaacacgct
     1321 caagggcaat gcgggcttca cgctccacaa tcgcttggtt cattcccaaa ataatcaatg
     1381 gtaatgcgac attatccaaa atggttcggt cggttaataa gcgataatct tgatgcacca
     1441 tcccgatttg gcggcgtaaa aacggcaatt catgatgagc aagtcgggta atatcgtgtc
     1501 cgttaaacaa aatttgcccg ccattggcac gctcaatccc cataattaat tttaatagcg
     1561 tgcttttccc cgcaccggaa tgcccggtaa tatatgccat tccaccggca ggtaggtgga
     1621 aatcaatgcc ctgtaaggct ggctttccgc ccttataaac cttgttcaca ttagtgaatt
     1681 taatcattct gttcgtcctc gtggctaaat aaggcttcaa taaattcttc tgcattaaac
     1741 gggcgtagat cttcaatttt ctcgcccacc ccaataaagc ggatcggaat attgaattga
     1801 tcggcaatcg caaaaatcac gccacctttt gccgtaccgt ctaatttagt taaggtgata
     1861 ccggttaaac ccactgcctc attaaacaat ttcgcttggc tgatcgcatt ttgcccagtg
     1921 ccggcatcaa gcgtaagcat aatttcgtgc ggtgcggttt catcatattt tttcatcacc
     1981 cgcacaattt tcttcaactc gtccatcagg ttatttttgt tttgcaaacg ccctgcagta
     2041 tcagcgatta gcacgtcaat cccttttgcc gcagcggatt gcatcgcatc aaaaatcacc
     2101 gaggcagaat ccgaaccggt gctttgtgcc accaccggaa tgttatttcg ctctccccaa
     2161 acctgtagct gttcaactgc cgccgctcgg aacgtgtctc ctgctgctaa cattaccgat
     2221 ttgccttctt gttggaattt acgggcaagt ttgccaatgg tagtggtttt ccccacgcca
     2281 ttcacaccaa ccattaaaat gacatacggt tttttcgctt ccaacactaa cggttgagcc
     2341 accggtttta gcacttcacc cagttccact ttcaactgtt gatacaacaa atctgcatct
     2401 tttaattgtt gcttggtagc atgttgcgtt aaattgttga tgattttttg tgtggtcggc
     2461 atacctaaat ccgccacaag caactgctct tccagctctt caaataactc atcatcaatt
     2521 ttcttgccac ggaagaaatt acggaagccc gaaccaatat tctgcttggt tttaatcaag
     2581 ccttgaatta aacgactgaa gaaaccgcct tgactcggtt tttcttgata ttcatcttgg
     2641 atagtagatt cttcaactgt gtcttgaaca ttatttacta attcagtttc agcaacttct
     2701 tcagccacag cctcttcgac ttgataagta acttgctctt gttcgttgag atctaactgc
     2761 tcagttgcaa tattttgaag attttcgacc gcttgttcgc ctttttgttc ttcaaatgtt
     2821 tgttcgattt tatcttcaac atcatcaaag aacgctttcg cctcttcaac tttttcttca
     2881 acaaactctt tgaaatcttc gactttttgt tcaatggtat cttctacttg ctcagcaaat
     2941 tgctcaattt tttcttcttt ttcctcaaaa tagtcttcta actgatctac cttttcttca
     3001 attttatctt ccagctcatc taatttttca gaaaacgact tctcagtttc cggttcaaca
     3061 ataacaggct gttccggttg aatactctct tgttcttgtt gaatctcttt ctgttcagct
     3121 tcttctttct taccaaatcc aagccaagac caaaaccctt ttttcttctc tgacatattt
     3181 ttctctcatt tctcgtaaaa atagactaaa cttacatagt ctatcaaaaa atcccttatt
     3241 ttcctttagt gagtatgaaa aaaaatcgaa attcccccca atctgttcag caaatgggcg
     3301 aagtacgggt tatcgccgga ctgtggcgag gcagaaaatt acctgtacta aatgccgagg
     3361 ggcttcgccc gacaaccgat agagtaaaag aaacgctgtt taactggtta atgcacgaca
     3421 ttgctcactc acgctgtctt gattgctttg caggcagtgg ctctctgggc attgaagccc
     3481 tttcccgcca agcacaagcg gtcgtttttt tggaaaaatt tgcaaatgct gccaaccagt
     3541 taaagaaaaa tctccaagca ttaaaatccg aacaaggtag cgttattcac actgacaccc
     3601 tcgcctattt agcacaaaaa aataacggtg agccatttaa catcgtattt atcgatccgc
     3661 cttttcatca agggtttgta cctcaagtgc taaacttgct ggcagaaaat aactggctcg
     3721 ccccgaatgc gattttgtat gtggaaaccg agaaaaatca cccgccatta gagctaccgc
     3781 aaggctggca aattttaaag gaaaaagcag ccggaatggt ggtaag
//
LOCUS       DANMGB010000199         3824 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.200, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000199 DANMGB010000000
VERSION     DANMGB010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3824
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.200"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(298..1392)
                     /locus_tag="PXG19_002338"
     CDS             complement(298..1392)
                     /locus_tag="PXG19_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6067591.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1526..2704
                     /gene="lpxB"
                     /locus_tag="PXG19_002339"
     CDS             1526..2704
                     /gene="lpxB"
                     /locus_tag="PXG19_002339"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL6067592.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2731..3783
                     /gene="sohB"
                     /locus_tag="PXG19_002340"
     CDS             2731..3783
                     /gene="sohB"
                     /locus_tag="PXG19_002340"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL6067593.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1130 a          667 c          837 g         1190 t
ORIGIN      
        1 acccctcatc actttttgca gtttaacctc ttttgcaaca gataatttaa atttaggcgt
       61 tttggctgct cagttattgc cattatgatt atattagttc acactaaaat tttagtgttg
      121 tttcttaaag ctgaagatgc taataggtga gtaagcggtt tttaccactt tgaagataaa
      181 tgcaatagct tcttgtttga aggattagtt gtatttaatc ataaaaaatc tgcaccttaa
      241 tcagttggtt agcccaactt ttaggtgcag atcattctag tacgcttttc agttttatta
      301 ccaatatgct cgtaagccta caacagtcgt ataattgcga gattttgcgg tttttacatc
      361 attagtatag tgtttagcac gagttgcttg ccattcaaca aagcctttta agtgttttgg
      421 aacaatgtaa tattccgttc ccaacataaa ttggtttctt ttaactttgc tatcatttgc
      481 caagcctaca gcattaagtt tgttttcttt ataagcatac attgtgtaag cattccattg
      541 atcggttaaa cgatggagta acacagtgcg aacttctttt tcgatacgtt tgtgaccgat
      601 agcattttga tcttccgttt cacggcgttc taaatctaag ccaagggtag tttttccgta
      661 ggtataagct gtaccgaagg caagagcaat gcgttcataa ttgccgatag attgctcaga
      721 acgctcacgg gttgcacctg ttgctaattt taagctttgg ttatcatcaa ttttatagtt
      781 ataaattgct gctgcacccc aaatatcttt acgtttattg actaaatcta agccattgtt
      841 tccacgttgg ctatttccgc catagaatgc tccgagtttt aatccttcga tgcctttgta
      901 aacatattga agcgtacgtc gtgatgaacc ggtaagtaag ccatcactta agctgagtgt
      961 atttggtaag tcagtttgtt ttacttcatc ggcaatatta gtcatattgc cgtatgttaa
     1021 ttcaccgtat tgtttatgcc cgattcctgc atagagttga tgatcataaa tatgatcgaa
     1081 gttatgttgt gagcttgaat cgccacgcat acgccattcc acacgaccta aagcatagaa
     1141 tccgtgaccc acttgctggg ttaaacggaa accaaaacga gagccgttgt tatccactgc
     1201 gtgattaacg tggttgcggg tagctttacc atttaccggt gaggttttat ctgaggtgct
     1261 ttcccactta atacgagcag aaccaataaa ttcaatttgt gtaccggttt ctttatgatc
     1321 gtaaatcgta atagctagag ctgagtttgc gattaaggct gatgctaaaa tcgctaatgt
     1381 tgtttttttc ataaaaatca ctccatatga atagataaag ggaggtagtg tatgtgaata
     1441 ttcattgcta gacaataatg ttttgttagt ttatatgatg attggttata atagagtcac
     1501 ttacagatct tcaataatat ttaatatgaa acaacaattc cccgttattg gcttagttgc
     1561 tggtgaggtc tctggcgata ttcttggtgc cgggttaatt aaggcgttaa aagtacatta
     1621 cccgaatgct cgatttatcg gtgttgcagg ctctcgaatg attgaggctg gctgccagtc
     1681 tttgtttgat atggaagagc tttctgtaat ggggctagca gaggtggtta aacatttacc
     1741 tcgtttactt aagcgtcgta aacaggttat tgatgagatg cttaaattga aaccagatgt
     1801 atttatcggt attgatgcac cggattttaa tttaaccgtt gaagaaaaac tcaaagcgag
     1861 tgggattaaa acaatccatt atgttagccc ttcggtgtgg gcttggcgac aaaagcgggt
     1921 gtttaaaatt gccagagcag ctaatttagt gttggcattt ctgccatttg agaaagcgtt
     1981 ctatgataaa ttcaatgtgc cttgtcgttt tatcgggcat acgatggcag atgcgatccc
     2041 actcgaacca aatcgtacag aggcatgttt agcgttaaat attgatgaat ccaagcgata
     2101 tatggcaatt ttggtgggaa gccgtggcag tgaaattcag tttttggctg agcctttttt
     2161 gaaggctgct cagttgttaa aagcccgttt tccggattta cagtttttag tgccaatggt
     2221 cagccaaaag cgaatggagc aatttaatgc aattaaacag caagtagctc ccgagttgga
     2281 actgaatatt attcaaggca aggctcgtca ggctatgatt gcgtcagaat gtactctttt
     2341 ggcatcggga acagcagcac tagaggcaat gttgtgcaaa tctccgatgg tagttggtta
     2401 tagaatgaaa ccgctgactt attggttagc aaaaaaatta gtgaaaaccg attatatctc
     2461 cttaccgaat ttattggctc aagccccatt ggtaccagaa ttgatccaag aagcatgcaa
     2521 cccggaaaat ttagctcaag agttatctct atttttagct gatgatgaga aaaaccaaca
     2581 acataaagca ttgctaaaac agcagtttat gcagctacat caatcaattc aatgtaatgc
     2641 tgatgagcaa gctgcccaag cggttatcga tctcctaaac ggctcgacaa gcggtcaaat
     2701 ttagttagtt ttttgtaaaa aggaaaattt atgtggaaag aagtattact taattatggt
     2761 atttttttat tagagttatt aactgtattt ggcattattg cagtggtggt gatgctgatt
     2821 ttggaatcga aaaagcagaa tgaaaacggc tcaatttcaa ttaccaattt atctgagaaa
     2881 tataaagagc agcaaaaatc tctttccggc ttttttctaa gtgaggaaga attaaaacat
     2941 caggaaaagc aggagaaaaa agtagcaaaa gagaaagcta aagcagaaaa aaaacgctta
     3001 aaagcaggcg aagaatgtgt agaaagccct tcccgtttat ttgtattgaa ttttaatggc
     3061 gatatgatgg ctcacgaagt aaattcccta cgccgtgaaa ttgatgcggt aattagcctc
     3121 gcgaatccgg aaaaagatga agttttactt aaacttgaaa gtccgggcgg agtggtgcac
     3181 ggttatggat tggctgcttc gcagttacaa cgtttgcgtg atcgcaatat ttatttaacc
     3241 gcagcggtag ataaagtagc tgccagcggt ggttatatga tggcgtgtgt ggcgaataaa
     3301 attgtctctg ccccatttgc ggtgattggc tcagtggggg tggtggctca ggtgccgaat
     3361 atccaccgct tactgaaaaa acacgatatt gatgtggatg tgatgactgc aggtgaatat
     3421 aaacgcacgg tgacgctggt gggagaaaat accgaaaaag ggaaacagaa attccagcaa
     3481 gaactggaag aaacgcactc tctgtttaag caatttgtgg ctcgacaccg cccacaactg
     3541 gatattgagc aggttgcaac aggcgagcat tggtttggtc agcaagcgat tgagctaaat
     3601 ttggttgatg agattgcaac cagtgatgat ctgctcctca atgcaattaa ggaaaaagaa
     3661 gtgatcgagc taaaatataa agagaagaaa aaacttgctc agaaattggg ttctcaattc
     3721 gagcaatcag cagagaacct gctcgctaag attttacata aaagtcgttc aacgctgatg
     3781 tagcgtatat attattaaag ggctatcgtt tatatagccc ctta
//
LOCUS       DANMGB010000200         3795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.201, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000200 DANMGB010000000
VERSION     DANMGB010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.201"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(140..1642)
                     /gene="ppx"
                     /locus_tag="PXG19_002341"
     CDS             complement(140..1642)
                     /gene="ppx"
                     /locus_tag="PXG19_002341"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL6067594.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1838..2167
                     /locus_tag="PXG19_002342"
     CDS             1838..2167
                     /locus_tag="PXG19_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL6067595.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2231..3661)
                     /locus_tag="PXG19_002343"
     CDS             complement(2231..3661)
                     /locus_tag="PXG19_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL6067596.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1240 a          857 c          656 g         1042 t
ORIGIN      
        1 ataagcaaac atcaaaaatg agaagttgat caaattttaa aaaatacttt ttgcaaaaaa
       61 ttagctaaat ttgaccgctt gttcgcaaaa gggaatgcaa taaacgaaaa aggaagcctt
      121 cgcttccttc atttaaatgt taagagaccg caaactgaag atttgtactc gccaatattt
      181 tttgctcttc ttctaaatct attgaaatca gtggattatt cgctaagaag ccctgttcaa
      241 aggtaagttg ccaagcatta ttttcaatca ccaaattcaa ctgtttcggc actacagtcg
      301 cttggcgaga acggtttaat agcaccgcta gccggaaaac ccgtaccaac gttaatacat
      361 ctctacattg gtaacggttg atactacgaa tatccgagcg tttgaatcct ttaaggtggt
      421 atcgcattaa taccgataga agggtttgct gttcaaaatc aaatcccggt aaatctcggt
      481 ttgcaatcaa ataagcagaa tgacgatgca cattattgtg gtttacaaca ataccaatct
      541 cgtgtaataa acttgcccat ttcagcattg aacgcagatc ttgcacttgg cggcggttct
      601 tccaagtttt gatttggtca aataaaatca acgccgtatg ctccaccctt tttgcttgct
      661 gtttatctaa agcaaattgc tcagctaacg cttctgcagt ccgttggcga atatccccaa
      721 cttggaaact tttctccaaa ccatacatta ccccttctct taaagccccg ttggaataac
      781 gtaatacatc aattctaaaa gtgtgaaaaa gtgctaaaag aatagctaag cccggaacta
      841 gcacatctgc tcgttcatca agtaagcctc gtagcttaat ctcatttaac gatttaaact
      901 ctaggcaaat atcaataatt ttctgtaggc ggctttctgt aattaagcca tcacgatagc
      961 cattggcaat cagcacttga tggacggttt taatcgtacc ggaagaacct aaagcatagt
     1021 cccaacctaa ctctttgtac tcccacatta aatcttcgat tttttccatt gcaagctgat
     1081 aggcactatc aaaacgctca atcgttaatt ccccctgcgg gaaaaagcgt tttgcaaaac
     1141 tcacacaacc catatgacga ctttccgctc gaatcggggt aaagtcatca ccaatagtca
     1201 tttccgttga accaccgcca atatctacca ctaattttct gccagtttcg ggttgggtat
     1261 ggctaacgcc cgaataaatc agcctcgcct cttgttgtcc ggaaataatg gaaatcgggt
     1321 aaggaaatac tgctttcgct tgctccagaa aagcttggtt attgattgct ctacgtaagg
     1381 tataagtgcc aaccaccttc acattctctg cagagaaccc ttctaaacgt tttgcaaata
     1441 aagctaaaca agcaatgcct ctatcaatcg catcttggct taatactaag ttttcatcaa
     1501 gcccatctgc cagccgtaca cgccgtttca aacgggaaag cacttgaatg gaaccattta
     1561 cgatacgggc tacaatcata tgaaagctgt tcgagcctaa atcaatagct gcaaactctc
     1621 taggagcaat atttgatgac ataatgaaac cctgtaccaa taactgaaat aagtaagata
     1681 ttaccatttt tgagccctag atatcactac aaatttagcg ttattcgcga gaattaattt
     1741 aaatcataaa atgtgataaa tttttttgac gaattgacgg aaaaagaata ggatttacga
     1801 gcttacttaa ttcaacacta catcaaggga gattgatatg tctgaagtga ataaatcatt
     1861 ccacgatatg ctggaatatg tgcatcttta tcgtctaaaa aacaaactgc accgtgaaac
     1921 ggcggataat gatcgcaaaa ttcgagataa tcagaagcgt gtacttttat tagataacct
     1981 aacgcaatat attaccgacg aaatgtctat cgaggaagtt cgagcgatta tttccaatat
     2041 gcgtgatgac tatgaaaatc gagtagatga ttatatgatc cgtaatgcgg aactttccaa
     2101 acaacgccgt gaaatccgcc aaaaaatggc ctctcacaaa caagcaccaa ccaataaaaa
     2161 agcataaaaa gccaagcggt ctgatttgca aaaaaatatg caaatcagac cgcttgtgat
     2221 taagcagaga ttaattcagc tttttcattg catctgccac aaattctgct tccggtccca
     2281 aaatcacttg gtagccattc tcgcctaatt tgatattacc ttttgaccct aacgctttca
     2341 atttggtttc gtctgctttc gccgtatcat ttaaggttag gcgtaagcgg gtaatacaag
     2401 catcaatgct ggtaatattc tctttaccac ctaatgcttc aacaaatttg gcagcttgtt
     2461 cgctacgaga aacagtattc actgtttgta cttcgctatc ttcctcacgc cccggcgttt
     2521 ttaaattaaa ggcttggatc actactcgga acaatacata gtaaattact gcgaatacga
     2581 taccttgggc caataacata taccactgca ctgccagcgg atttcgtgtc gataacacta
     2641 aatcgaccaa ccctgcacta aaaccgaaac cggcaatcca ttccattgag gctgcaatat
     2701 aaacagataa tccggttaat aatgcgtgaa ccacataaag cacaggtgca acaaacataa
     2761 aggcaaattc aagcggttcc gtaatgccgg tgaagaacga agctaaagca gcagcaaaca
     2821 taatagaggc tacttgcatt ttcttagccg gtttcgcact gtggtaaata gctaatgctg
     2881 ccgcaggtaa gccaaacatc atcatcggga agaaaccagc ttgatacata cctgttactc
     2941 ctatcactgc tttgccctca gccaatgatt ttgccccacc taagaagttt ggaatatcat
     3001 taatgcctgc aacatcaaac cagaaaaccg agtttaatgc gtggtgtaat ccaaccggaa
     3061 ttaataaacg attaaagaaa gcataaatac ctgcccctaa cgcccccata tctttgatag
     3121 attccccaaa agagactaaa gcaccaaaaa taaccggcca gacataaagc aagataaatg
     3181 acaccacaat cggcaccaat cgtttaccgc taaagaaaga caatgctttc ggtaactcta
     3241 cttggtagaa acggttataa atttcggctg aaataacccc tactaagatc ccgataaatt
     3301 ggttgttgat tttaccgaat gctgcaggca cttgatcaac tgcgatccct tttagctgag
     3361 caacggtccc cggagacaac aaagtggtaa ttactaaata cccgactaaa ccggataatg
     3421 ctgctgcccc atctttttct tttgacatac caaatgccac acccacggca aatagaatag
     3481 acatattatc aataattgcc gccccagatt taatcagcaa tgccgctaat tggctatttg
     3541 ttccccagcc gtccggatca atccaatagc ctatacccat caataatgct gctgctggta
     3601 atgcagcaac cggcaccatt aatgcacgcc caattttttg taaataggtt aatgtactca
     3661 taaaagcctc caaaaatacc tcataatgag taacttaagc atagaaaaaa accgattaaa
     3721 gaacaatcaa ataaatttgg ttttgtgatc catttcaaaa tattttttag gagtttttat
     3781 tcaacattag aaata
//
LOCUS       DANMGB010000201         3787 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.202, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000201 DANMGB010000000
VERSION     DANMGB010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3787
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.202"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..960)
                     /locus_tag="PXG19_002344"
     CDS             complement(<1..960)
                     /locus_tag="PXG19_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL6067597.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLL"
     gene            complement(1010..1816)
                     /gene="trpA"
                     /locus_tag="PXG19_002345"
     CDS             complement(1010..1816)
                     /gene="trpA"
                     /locus_tag="PXG19_002345"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL6067598.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            complement(1818..3008)
                     /gene="trpB"
                     /locus_tag="PXG19_002346"
     CDS             complement(1818..3008)
                     /gene="trpB"
                     /locus_tag="PXG19_002346"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL6067599.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            complement(3020..3772)
                     /locus_tag="PXG19_002347"
     CDS             complement(3020..3772)
                     /locus_tag="PXG19_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6067600.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
BASE COUNT         1044 a          899 c          680 g         1164 t
ORIGIN      
        1 taatagttgt aataataact cgcctgtttt ttcattttct aatgtttgag gattagataa
       61 taaaggcgta atatcattgg ttaatttagc atctaaatcg tatgccatat ccatttttaa
      121 tttacccatt tcaacaccct caatgttgaa agtggctgcc tctaaatctc cggtagaaat
      181 taaacgatcg ccttttaata gattatcgcc cttcaccaca acatctttaa tttgagataa
      241 tttgccatct ttagacttaa actcaatagc gttaattttt ccactacctt tgcctaaagt
      301 taaattagga taactttcat tattttctgt ttgaacatca taaactatac cttgaatttg
      361 aaaatcaaat tcttctgctt ttatcttaag actttctagc tcaacagtgc tatcaacccc
      421 ttttaatttt tggtcgtagc tatattgcac tttgattggc gtggtttcaa tatgacctgt
      481 ttcatcacta tgtttaatcg gggaaatatc aaaatgccct tccacatcgc ccgaatagct
      541 gatattagaa aaaccggtgc caatatgttc acccatcaat tttttaaggg cttcaggagc
      601 ttgtaatttg ctttccgcac tcatcattac aggagctaaa ttaagtttcg ctaaacgatt
      661 aagcggtagc ggaccgtgat gaagtttatc attaccaaca aagtccaatt tcttaccatt
      721 acccaaatcc acttctaaac gatatttcgc attagagata aagaaatggc gatcgatctg
      781 cacatcttta agctcaatat tcgcaccaaa ttcgccactc agttgtttaa gttggttatt
      841 agcttgaaca accaattctt gatatttttc ttcaacctgc ttacctgtgt accaacttcc
      901 gccaactgca acagcaccaa ttaccgctac aactgaaaga acaatttttg ttaatttcat
      961 tctgtttcct tttattttca aaaaaattta aaaaatgacc gcttgtagtt tacttcgtag
     1021 ccgctttcat cacttgtaca aattcggcaa gttctttgag caaattagct tggtcagcta
     1081 aattacgttc aataattttc acaatcgctg agcctgaaat cgccccgtct gccccaagcc
     1141 ttaacgcctc ttttacctgt tcaggtttgg ctatgccaaa accttgtaag ataggggcag
     1201 ctccggcttg ttttaaactt tccactaaat tatccaaatt acttgcgtga gcttggtttt
     1261 cagcactagt tacaccggca cgggaaacta aataagtgta gccttgggtt aattgagcaa
     1321 tccgttcaat ggtgttttga tcagcattcg gcgggcaaat aaacaccggc tgaattccat
     1381 atttttcagc ggttggcaca aactcttgag cagcgaaaac aggcaaatca gcaatcaaca
     1441 ccgcatcaac tccactttgt tggcaacgtt ggaaaaatac ttctgcggtt ggcacaaaaa
     1501 ttaaattggc acacagtagt aaaccgatag gaatgtctgg atatttagct cgaattttgg
     1561 caatcagctc aaaacagcta tcagtgctat agccaccatc taaagctcgt ttattcgctg
     1621 cttgaatcac cggcccgtct aagagggggt cagaaaacgg aaagcctagc tctaaagcat
     1681 cagccccgtt tttaatcatc gtgtcgataa tctcaaaact gcgttcaaaa ccaggatcgc
     1741 ataatgtcac aaacggcaca aaagcccctt cgttttttgc ttttaatgca gtaaatagcg
     1801 tatcaaagcg gctcatttta ctctcctcca tttaaaattt tatccacggt gaaaatgtct
     1861 ttatcgcctc gacccgataa attcaccact aataactgct ctttttcagg gttctgctta
     1921 atcattttta acgcataggc taaggcgtgg gaagattcta acgccggaat aatcccctca
     1981 tttttggcta atgcttggaa tgcctctaaa gcctctgcat cggtaatcga tacatattca
     2041 gctcgccctg tcgcatttaa ataagcgtgt tgcggcccga cagaagggaa atctaagccg
     2101 gctgaaatgg agtaagactc ttcaatttgc ccgtctttat cctgcataat cggcgatttc
     2161 ataccgaaat agatccccgt tgtgccgtgt ttgagcggtg caccgtgttc accggtttca
     2221 attccttttc ctgccggctc aacaccgatc aatttgacgg attgctcttc gataaaatct
     2281 gcaaacatac cgatagcatt tgagccaccg cctacggcag caatcaccgc atcaggcaag
     2341 cggtcttctt ttgctaaaat ttgacgtttg atctcttcgc caatcatttt ctgaaattca
     2401 cgcaccattg tcgggaacgg gtgcgggccg gctgcagtgc cgattaggta atgggtagta
     2461 tcataatttg ccgcccaatc ccgcattgcc tcgcaacagg catctttgag cgagcaagag
     2521 cctttttgta ccggaatcac ctccgctccc attaaacgca tacggaatac atttggcgat
     2581 tggcgttcta catcttttgc gcccatatac accacgcaag gcattcctaa catcgcacac
     2641 gctaatgcgg ttgccacacc gtgctgtcct gctcctgttt cggcaataat gcgggtttta
     2701 cccattcgtt tagcgagtaa gatttgccct agcacttggt tggttttatg tgccccaccg
     2761 tgtaaaagat cttcacgttt taaatagagt ttggttttac tgcctttggt taaattacga
     2821 caaagggtta aagcagtcgg gcgaccggca tagtttttga gtaaatcggc aaattcagct
     2881 tggaatgttg ggtcttgctg agcatctaca aaggcttgtt ctaattcttt tagcaccggc
     2941 actaaaattt ccggcacata cataccacca aattcaccaa aataaggatt aagaagtgtg
     3001 tctgacataa tatttccttt taaatatttc tcgctacatt taaggcagaa gaagtttgag
     3061 ccaccggcat cacttcaacc cgattaatat taacgtgttc aggttgctga ttcagccaaa
     3121 gcacaatatt tgccacatct tccgggcgca caaactgcac gttttcataa actttagccg
     3181 ctttttcatc atcgccttta aagcgtacat ttgaaaattc cgtaccgcca catagccccg
     3241 gctcaacatt ggaaacacgc actttagtgc cggctaaatc tgcccgcaaa tttaggctaa
     3301 actgtttcac gaaggcttta gtaccaccat atacattacc gcccgggtaa gggtaagtgc
     3361 cggcaatcga gccgatatta ataatatgcc cacttttccg ctccaccatt tcaggcaaaa
     3421 ctaagcgtgt catcgttacc aatcctttaa tattggtatc gatcatttga taccaatcgt
     3481 tcaaatctgc tttctgtgcc ggttctaagc cgagtgcaag gcctgcattg tttactaata
     3541 aatcaatttg ttgccacgct ttagggcggc tattcagtgc tttttccacc tcatcgggct
     3601 gttgaatatc aaatgcaagc ggtagaaatt tatcgccaaa ttgtaaatgc agttcttcta
     3661 aacgctctgc ccgtctgccc gtgccaatta ctttataacc cgattgaagc aataatttac
     3721 aaattgccaa cccaaatcca gcagttactc ctgtgactaa tgctattttc atcttttcac
     3781 cctcaaa
//
LOCUS       DANMGB010000202         3711 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.203, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000202 DANMGB010000000
VERSION     DANMGB010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.203"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            39..209
                     /locus_tag="PXG19_002348"
     CDS             39..209
                     /locus_tag="PXG19_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067601.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            184..1053
                     /locus_tag="PXG19_002349"
     CDS             184..1053
                     /locus_tag="PXG19_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6067602.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            1050..2411
                     /locus_tag="PXG19_002350"
     CDS             1050..2411
                     /locus_tag="PXG19_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL6067603.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            2408..2944
                     /locus_tag="PXG19_002351"
     CDS             2408..2944
                     /locus_tag="PXG19_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL6067604.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            3035..3250
                     /locus_tag="PXG19_002352"
     CDS             3035..3250
                     /locus_tag="PXG19_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067605.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            3234..>3711
                     /locus_tag="PXG19_002353"
     CDS             3234..>3711
                     /locus_tag="PXG19_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL6067606.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDEN"
BASE COUNT         1249 a          636 c          881 g          945 t
ORIGIN      
        1 caccgctgga acggtggtaa tttacaagga gttacctttt gaaaaatcaa cgcaatgata
       61 cacaaaaaag ctccttatgg caagagtttg aatatcgaaa acggttaaaa aatctcattg
      121 aaagcggttt atccgtagcc gaaattgaaa cccgttcaca acaaatttat gaggagctga
      181 aaagtgaatg cacaaccgaa gcaaattaac ccaattttaa aattgcaccc taaacaatca
      241 gaggctaaga aagtgagtgt tgatgatggt tatacacaaa ttccgaatga gttattaaaa
      301 gcaattttgc gatcgggtgt tttaggttgg aaaggctctt acttactggc taccgtctta
      361 aaaacattgt cttggcataa agaaagtgat tggttcacgc attcccaagt gtgtgaaatg
      421 atgaatattg agccgacaaa ataccatatt aatcaacttt ccgctgctcg aaaagaactt
      481 atccgtgaaa atatcttgtt tgaagatggt aaggaaacag gggtaaatct cagtgttttt
      541 gaatggaaaa tggtatatcc cgaaaaagta gggagttccc gaaataatag ggaattaatt
      601 cccgaaaaag tagggaatgg gtatcccgaa aaagtaggga acacaaaaga aactattaca
      661 aaagaaaaaa taaataatga atttactaac gtaaattctg tgcaacagcc cgagacctct
      721 ttgccgaaaa aaacaaaatc tgagccggtc gattatcaag gagtgatgga agaatttaat
      781 cgtgctgtgg aagacacacc gattccgcaa attcgggcga tgagtgatga gcgaaagcga
      841 tcggttcacg cattagcaaa aatcttgcga aaagaatttg gtggctacac cagacaacac
      901 tttgccgatt acttcaatga ttttgtccga caggcaagta gccggaaaga cagattttat
      961 tttggcgggc ttgatggctc ggcttgggta gcaaatttcg gctacatcat tcgttcgaaa
     1021 acgttttata agacttggga agattcgcta tgagccaaaa tttgaaaaat atcacttacg
     1081 aggttgaata tttgctggtt ggagcattgc tgaaatccgg tcttaactcg aaagctaggg
     1141 acgtattgag ctggttagag cctgaaatgt tcgctacctt tcaacttggg gtgatttatg
     1201 aggctatccg caagcaggcg ttgaaagata acgtgatcga tatgctgtta ctcaataccg
     1261 actacggaca agattttgcc acgttggcag agataatgaa aaacacgatc agcggtgcaa
     1321 acttagacgg ctatgcagaa aaagtccggc aatatcatca acgccgagaa gcccagcgag
     1381 tgtttttaga cgttgcaggt gagttgcaaa atgcccgaga cgagcagtta gatgctatca
     1441 cttcaaccgg gttagctcac ctaagcaaat tattacaacg tggcggaaaa gtgaaaccga
     1501 ttgatatgaa tgatttgctc gaaggttatt tggaattgtt ccaagaacgt gcaaaaccaa
     1561 gttttaaaga gcgtttgttg tttaccggta tagaagcatt agatgggaaa ctaggcggta
     1621 ttaacgatac cgatatttgc attgtagcag gacgtgccgg taacggtaaa accgaaacag
     1681 ccatcacgtt tactaaaaac attatcgaga ataaaggttc ggtgctgttc ttctcgctgg
     1741 agatgagcaa agagcagatt atggataggc tgattgccag tgcaagcggt gtaaattcag
     1801 taaaacttcg caatccggaa atgatgaatg atgaagattt tgcccgaatg ggaacggcga
     1861 ttcagccttt acaaaatcag cagttgtaca ttgttgataa aagcggatta accgcagaag
     1921 agattgtggc gattgcagag agccatattc aagagtacgg caaagtgagt gcggtagtga
     1981 ttgattatat cggtttggtt cgacacggca aactagacgg caaaattaac cgaacctatc
     2041 aaatcggtga aagtatggag cggtttaaaa ctttctgcaa aaacaatcac acaccgatga
     2101 ttttattggc acagcttaac cgcaatgcag atggcagtcg cccaaccaac gcagatttgc
     2161 gagacagtgg cagtcttgaa caagatgcaa gccaaatcat tatggtgcat aaccaacgca
     2221 acaaagacgg cgagccagcc ccctatacag aatggattgt tactaaaaat cgctttggag
     2281 caaatggcac ggtttatatg caattccagc agggtaggtt cgtagaatgc gaccaggcag
     2341 aagcgcggga gtatttccag ccgaaagaaa ctaaaacatc atcaaacaaa cgctatggag
     2401 caatgcaatg acagattttg ataaaaatat aaaatacaaa attatttacg cagatccgcc
     2461 ttggaagtat aaggatagtg gctgtaatgg gagtgcagaa aaccattaca caacaatgaa
     2521 tatcaaagaa atatgtgatt tacccgtcca agatatttca gacaaagatt ctattctgtt
     2581 tttgtgggtt acttacccta tgttacctga gggcttaaag ttgattgagg cgtgggggtt
     2641 caactataaa acaatagggt ttcaatgggt gaagacaaat aagaagaata agaattcttt
     2701 tttctttggc ttgggacgat ggactagagg taataccgaa tgctgtttaa ttgcaacaaa
     2761 aggaaagcca tcgagggtaa gcaataaagt gagccaatta attattgagc caatacaaca
     2821 tcatagtaaa aagcctgaca ttgtcagaga aaagatagtt gagttgatgg gtgacttgcc
     2881 aagaatagag ttgttcgcca gaaataaaac ccaaggttgg gatgtttggg gggatgaggt
     2941 gtgattgttt caagctattg ttacccaaag tgcggtaggg ttttattaaa aaggttggcg
     3001 gttgtgaagg ataacgaagg ttgggacggt ttagatgatt acttataaat gccccaaatg
     3061 caacggagag cttgaagatt taagtattaa tgatgaatgg ggttggtttt tagatgagcc
     3121 gtatcgttgc aacggacact atacagggcg gtttccaaac attagccgag atagcacgtt
     3181 aaatcgcaca aaatcctgtg ggtactttag caaggaagag gttaagaaag taaatggcac
     3241 acagcgttaa tgacatcgta aaagcccacg gcaggcgtta taaagcaaga ttgaaaatac
     3301 agatgataaa aatgcaagga ggcgttttag tcccccttaa tgagcgtgaa gctgaagcat
     3361 tggtatcact taaaaatggc gagcaatatg aaattgaggt tattcgcact cgcaatccag
     3421 cctttcatcg gaaggtcttc gcctttttaa atttttgctt tgaatattgg tcggcagaca
     3481 aaaccgaatg ggagtttttt gatgagagga aacagtttga tactttccga aaaaatctga
     3541 ctgttctggc aggatttaaa gaaatcacat acaccctaga tgggcgtatg cgtgtagaag
     3601 ctcaaagtct tagttacgga aatatggaac aagacgagtt cgagcaggtt tacaaagcat
     3661 tgattaatgc agctatcaag cacgttttca acaataccaa agatgagaat a
//
LOCUS       DANMGB010000203         3708 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.204, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000203 DANMGB010000000
VERSION     DANMGB010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.204"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            159..491
                     /locus_tag="PXG19_002354"
     CDS             159..491
                     /locus_tag="PXG19_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL6067607.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
     gene            556..1647
                     /gene="trmA"
                     /locus_tag="PXG19_002355"
     CDS             556..1647
                     /gene="trmA"
                     /locus_tag="PXG19_002355"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL6067608.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            1739..1828
                     /locus_tag="PXG19_002356"
     tRNA            1739..1828
                     /locus_tag="PXG19_002356"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1773..1775,aa:Ser,seq:tga)
     gene            1984..2355
                     /locus_tag="PXG19_002357"
     CDS             1984..2355
                     /locus_tag="PXG19_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL6067609.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(2352..3263)
                     /gene="xerC"
                     /locus_tag="PXG19_002358"
     CDS             complement(2352..3263)
                     /gene="xerC"
                     /locus_tag="PXG19_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL6067610.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(3330..3620)
                     /locus_tag="PXG19_002359"
     CDS             complement(3330..3620)
                     /locus_tag="PXG19_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL6067611.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
BASE COUNT         1098 a          815 c          726 g         1069 t
ORIGIN      
        1 tctattttaa aaggatcaat atttctcctt aaagagtttt ttgcaaaaaa tttgccaaat
       61 ttgaccgctt ttttacatta aggcattgat ttattcgctg tttttgttta atgtatgccg
      121 attttatttt ccctaatttc aaacaacgag gcattattat ggcagacagt ttcagcgtta
      181 cgcgccgctt ttttgacgat aaaaattatc cacgtggttt ctctcgccac ggcgattaca
      241 ccattcgtga atcacaaact ttagaacaat tcggtcaagc ttgcttggct ttagaaagtg
      301 gtgaacgtaa gccggcaact caagaagaaa aacgtttcgt tgcggtaatg aaaggcgaag
      361 aggtagcaga aactgacatt gaaaaagcgt ggttaaaata ccgcacatta actagtaaaa
      421 caaaacgcat ctacaccctt tcaggcaatg caggtagcga tgccggcgat gacttcagtg
      481 ctgctgaata atttctaatt taaaaccacg aagtaattcg tggtttgttt tttcatttgc
      541 tatttgtggt aaaaaatgac tcttcctatc gaacaatatt ccgatcttct tgcaaaaaaa
      601 accgaaaatt tgaccgcttt actcaagccg tttaacccgc ctgcgattga ggtatttgcc
      661 tcaaagccaa gccatttccg tatgcgggca gaatttcgag tgtggcacga ggaaggcgag
      721 ctgtaccaca ttatgttcaa ccctgaaacc aaagctcgtt atcgtgtgga tagcttccct
      781 attgccagtg agctgattaa ccatatgatg accgcattat tggcggaaat taaaggcaat
      841 gaactactga ctcgcaagct gttccagatc gattatttaa gcaccttaag cggtgaaatt
      901 gcagtctcaa tgctttacca caaaagcctg aatgaagaat gggttgaaca ggcaaacgcc
      961 ttaaaaagcc gtttagagca acaaggtttc aaagtgcaaa ttatcgggcg tgccaataaa
     1021 caaaaaatcg cactggattg cgattatgtg gaagaaattc taccggtaca cggcaaaaat
     1081 tatgtgtatc gccaagtgga aaacagcttt acccagccga atgcggaaat gaatattaaa
     1141 atgctggaat gggcgagaaa ttgcacaaaa aatagtgaag gcgatttgct tgagctttac
     1201 tgcggcaacg gcaatttttc gattgccttg gcggaaaact tccgcaaagt gctggcaacc
     1261 gagatctcaa aatcttcagt gcaatcggct caatacaata ttgaaaaaaa tggcattgtt
     1321 aacctacaaa ttatccgaat gtcggcagaa gaatttaccc aagcgatgaa cggtgtgcga
     1381 gccttttatc gcttaaaagg gattgattta aacgcctacg aatgcaatac catttttgtt
     1441 gatccacctc gtgcagggtt agatcaagct acattaaata tggtgcaagc gtatgagcgg
     1501 attctctata tctcttgcaa tccggaaacc cttgccgaga atttacaaca attaagccaa
     1561 acccatcgga ttgaaaaagc cgctcttttt gaccaattcc cttacaccca ccatattgaa
     1621 agtggcgttt ggttaattag aaaataaatt gtgctgaaaa aaagaacgaa taagcagctt
     1681 ttaagattta ttacttgacg atgttcgcaa taatctctat tattgcaacg ttttcaacgg
     1741 aggaatggca gagcggttga atgcaccggt cttgaaaacc ggcgagggtt aacgccctcc
     1801 gtgagttcga atctcacttc ctccgccagt ctttaaacct gttgagcaat cagcaggttt
     1861 ttttatttca tttgcaagaa aatcagataa aaccaccgct tgaatccatc gctataaact
     1921 ggttgaaatc agcctaaagt tgctttagga taattgcgat tcattatcaa taacttaatt
     1981 attatgaaat acctttatat tatctgtggt tttatttgta ttggtttagg catcatcggg
     2041 gcagtattac cgggcttgcc gaccacaccg ttcttacttt tggctctgtt ctgctttact
     2101 aaaggctcgg agagaatccg ccagtggttt attcaaacca aattatacaa aaaatatctg
     2161 caagaatatg atgagaaacg ggcaatgacg atgaagcaaa aaatcacgat tttagcgatt
     2221 tcgtttccgt ttacactatt tgctttcttt gcactgcccc atatcggtgg gaaaattgcg
     2281 ttagtagtgt tagtgataat tcaatattgg tatttcttct gcaaaatgaa aacccttgaa
     2341 ccggagaatg cctaatcttc ctgcttccgc cttgctcttg ggtgggcaga gtcataaatt
     2401 ttagctaagt gttggaaatc cagatgcgta taaatttgag tggtggacag gctactatga
     2461 cccaataatt cctgaaccgc tcgcaaatca ccgcttgcct ctaacatatg agtcgcaaaa
     2521 gagtgacgta atttatgtgg atgcagatgg ctttccagcc cttgtcgctc accccatttc
     2581 ttcattgcca actgaatgga acgatgagat aaccgcccac ctcgcttatt cagaaacacc
     2641 gcattatctt gcggcttaaa ttgcaaacgc atttctaacc agcgatttaa cgcttttaac
     2701 gcttgcgagc caatcggcac aattcgctct ttgctaccct taccttgcac ccgtacttct
     2761 cgtgccgata aatccatatc gcctaaatcc agcccttgta attccgataa acgcaagccg
     2821 gaactataca tcagctccat catcgcaata tctcgaatat cgctcggctc atcactctca
     2881 atcgccagca actgcccgac ctgctccgca tcaatatttt tcggcaaatg cttacctact
     2941 ttcggcgatt tcacccctaa agtcgggttt gccgacattc gcccgatttt aatcaaatag
     3001 acaaaccatt gccgtaacgc caccaagcgt aagccgatac ttttcgcact caacccttgc
     3061 ttatggcttt ggcttaacat ccaacgcacc gagctacttt cgacctcttc ccaattttca
     3121 atgcctgctt gcgaaaaaag ctcgctcacc gccattaatt ggcgttgata attgcttaag
     3181 gtatgcgggc taacttgctt ttcaatgcgt aagaaatccc aataggggcg ggtttgttgg
     3241 aaaagagggt tggaagtggt cataaacgta ataacaagcg gttaattttt aggaaaatgt
     3301 tgcaagggca aaagatttgc cctttgagat taggctagcc ccaactgacc gatacgcacg
     3361 ccaacattac caagtgcaac agggcttaaa tattcgccga gaaattcaaa caattcattc
     3421 acatcagtaa aactgcgatg agttttcact tcttgctcca ctttacgagt aaattcataa
     3481 tgtacatttt cgccgttaat aaaggcttcc agcgttaaat atacggtttc aaaatagtgg
     3541 cttggcgagc cttcaaagcc cggatcactc actcgaacat tccaatgatt actaaataaa
     3601 acttcggttt ttactgacat tgtgttttcc ttcttcctat aagtacgtac attattttaa
     3661 tcaagataga ttgaatttgc cacttttcct agtcagaatc gaggcaaa
//
LOCUS       DANMGB010000204         3651 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.205, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000204 DANMGB010000000
VERSION     DANMGB010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.205"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(75..2639)
                     /locus_tag="PXG19_002360"
     CDS             complement(75..2639)
                     /locus_tag="PXG19_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL6067612.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2763..3461
                     /locus_tag="PXG19_002361"
     CDS             2763..3461
                     /locus_tag="PXG19_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL6067613.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3437..>3651
                     /locus_tag="PXG19_002362"
     CDS             3437..>3651
                     /locus_tag="PXG19_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067614.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIEN"
BASE COUNT         1108 a          805 c          609 g         1129 t
ORIGIN      
        1 aaaattggca cttattatcg caagaaatcc ccctattttt caacttttaa gagcattatc
       61 cttgtaataa attattagaa taattcaccg ctttttagca cccctggtgg aggtaatcct
      121 aaacgtaacg gcgcagattc tgttttttga ggcgcttttt cagtataagc tctctctaca
      181 atataacgtt ttgtaggctc agtaccctta ataaaatact ctttacgtcc atttcctaag
      241 aaaccactat tagggtcaat attaacctca ataatatttt ttggaagggt acttttttcg
      301 acaggcttat ctgacaatgc aactttcata taatttgtcc aagctggtaa agcagtacta
      361 gaacctgaag cacctctacc taatactctt ttattatcat caaagccaac gtacacaaca
      421 gtagaaatat tagcaccaaa tcccgcatac caagttgcct tggcattatt ggttgtacca
      481 gtcttcccgc ccacatccgc tcgttttatc gtattgagca ttttatagct tgttcctcgc
      541 cagccatatt caggctcacc agtaattgct gtagctaaag cactacgcat taaaaaagcg
      601 agttcatcac taataacatg aggagcgtaa cgtaaccctt tgatatgatg agaagattct
      661 gccattaagc tcggcgcatt tttctcgcta ttgttcgctt gtaattcagg ttctgaatcg
      721 ccaacatctt ccacaacatc gtcgtcatca ttattcgagg aattcgctat agtttgtaca
      781 ccgacttgag cttcatcatg aattttgact gattcaaaat atttaggctc agggtaaaca
      841 actgggctat cgcaactatt acaagctact acaggatttg cttgatataa ctcgtagcct
      901 tgggcatcaa taatacggtc aatgatatat ggttcaatca aataacctcc attattaaat
      961 actgcataag ctcgagccat ttctaatggc gtaaaagatg cagcacccaa tgcaagagat
     1021 tctgttgcaa catactgatt tcggttaaag ccaaaacgtt gtaagtagtc tgcaacataa
     1081 tcaatccctg ccatttgtaa tatacgaata gccaccatat ttttcgattt acctaatgca
     1141 acacgagttc tcaacgggcc gccataaacc ccatcggcat ttttaggtcg ccactctttt
     1201 tgccctttct ttttaatgac aataggagaa tcgctaattg ttgttgaaag acttagccct
     1261 ttattcattg ccgctgtgta aataaacggt ttaatcgcag agcctacctg aactaatgac
     1321 tgagtcgcac gattgaaacg gctttgttca aagctaaagc ctccaacgat agattcaatg
     1381 gcaccgtttt cactattaat tgacactagg gctgaattta cctccggaat ttgtcctaaa
     1441 gcccactccc tatttttatt ttgacgtacc caaatttgtt cacctgcttt taacccttta
     1501 ggtgcaaaag aagcatttgt acgttttaaa acagagatat caccatttgc caataaaatt
     1561 gtatattttg atttatctgc ttgcattaca acagctggtg taaacggctc tgattttggc
     1621 agcttactta aatgatcgat aattttctca tcgtcccaag cagaactacc tgtccataat
     1681 ttttcagcgc ctcgccaacc atgacggcgg tcataatcaa tcaaattttc acgtaacgca
     1741 tcttgtgctg ctttttggtc tgctgaaagt accgtggcgt acacttttaa gcctttgtta
     1801 taagcaatat tttctccata gcgtttcaca atttcttgac gaaccatttc tgtcacataa
     1861 tccgctcgaa attctaatgt cgcaccatag tagttagcta ctactggctc tgctttagct
     1921 ttctcatatt cctcttttgt aatatctccg gtttctagca ttctcccaag cactacatta
     1981 cgacggtctt ccgcccgttt tactgaataa agtggattca tcgttgaagg cgcttttgga
     2041 agccctgcaa taattgctat ttcagaaagg gttaaatctt tcaaagattt attaaaataa
     2101 gttttagccg cagcggcaac accgtgagaa cgatacccta ggtaaatttt gtttaaatac
     2161 agctccagaa tctcattttt actgagaacc tgttcaattt ctaaagctaa aattgcctct
     2221 ttggccttac gctctaaact acgttcaggt gttaagaaaa agtttttcgc cagctgctgg
     2281 gtgattgtac ttgcgccttg agtatctccc tggctagtgc gccatattgc acgcataata
     2341 cctttaggat cgatcccttt atgctcgtaa aaacgtgcat cttcggtagc aagaatcgct
     2401 tttactaaca tcggtggaat atcatcaagc ttgaccggaa tacggcgttc ttctcctact
     2461 tcaccaatta atttaccatc taaggtaaaa atctgcatag gctgctgtaa ctctacattt
     2521 ttcagcgttg ccacatcagg caaatcagat ttgaaatgca tgtacagtaa accaccaatt
     2581 accccaccta aaaccaagag tgaaagtaaa gcactaaata ttatttttgc gatccgcatc
     2641 gaaaaaatct cttttggtta atgacgaaac ataaatttaa agccaatatt aggtcactaa
     2701 gtataagcta aaaacgctta cttcgcataa ctaattgcaa aactttcctt actatactta
     2761 ctatgaaatt acttaaagca cattcaaaaa caccttcaaa ccgtatcatc ttaggcttaa
     2821 gtgaagatga acaacgttac tgcttagtca aaaataaagc agaaaaattc accgtttttt
     2881 ggcaagccaa gcctgcgagc atcgaagagc ttatcggtaa tctcacccca caagaacaag
     2941 caatgatgac gctggttcgc ccgatccctt accaatacat ttggcgaaaa accgttttta
     3001 tggctaacac cctcaatgaa gctcaattac accgtaaggt aattcacatt ttaaaaaatg
     3061 agcagccact tgcattggat ctactcaata ttgactatca gcgatttcca agcagcaacg
     3121 ataatctgga taaagtggtt atctacgccg tgcgaaaaag ttataccgag aatttgagcc
     3181 aatttaacag catcttagat tgtgagctgc attgctatgc acgggctata attcatttaa
     3241 cacaatccca aaataatcag cctgcgccct gtttttcatt taaacagaag tacttccaat
     3301 ttaccgagac ggaattactg atattgcaaa cagaacctga ggattgtatt catctatctg
     3361 atctcaaaat tgaccatctt gaaatcgagt gtgagcaaga gaaacagcta tattgcctcg
     3421 ccttaggagc aagtttatgg aatggcaagg tattgattta agtgctaatc gaaaaaataa
     3481 ctggtttgcc ggcagtgata aaggcatcaa aaacgtgatt tatacacttt tattatctgc
     3541 cctcattagc ttggctctga tttttctcta tttgcaaaaa aatcaagaaa ttcaaccgct
     3601 tgcacagcaa ttagagctgg taaaaaccga tatattaaat attgaaaata a
//
LOCUS       DANMGB010000205         3625 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.206, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000205 DANMGB010000000
VERSION     DANMGB010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.206"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(16..198)
                     /locus_tag="PXG19_002363"
     CDS             complement(16..198)
                     /locus_tag="PXG19_002363"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6067615.1"
                     /translation="MALLADSTVDRLVAENGLVEVLGETENPKFDLTMIYAAHRYPSS
                     IVRAFVGFVLEQVKAN"
     gene            complement(167..877)
                     /locus_tag="PXG19_002364"
     CDS             complement(167..877)
                     /locus_tag="PXG19_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6067616.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            complement(874..>3625)
                     /locus_tag="PXG19_002365"
     CDS             complement(874..>3625)
                     /locus_tag="PXG19_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067617.1"
                     /translation="FIDNEFEAIQIFFPYYGLQLPSIPLLNPEFSNPLYLKLFCESLK
                     YQGETCVPKGHKGFNHIVKSYLDGIEKRICEQIEQDIGSHLVQRAANVIAKLQLEEDK
                     YSLDYMTVKRAICDELIVDIAETDAKKFLDYLIKENVISKNAYYNRDEEYIYFNYERI
                     GDYQKANLILKNIHNQDDFVQWLSTEQGKKLYSRVGYDKGVWEALSVLLPERFDFEVF
                     EVIDYSKEWSWFEIIVENLFWRQPEKINMQKLHQFFKNSPYFNQATWINILYQLATEI
                     NHPLNIKYLHNKLYSFSLADRDEIWTAFIALESDQCPAIERLLTWCQKSSGQENIEPE
                     ALLLGAIAVSWLFTSTDKRSRNGYINALAHLLWNRLEIALALFKEFIEVNDPYVMEGI
                     LSAIHGAVAYSENSSGLKALALEIDNQIFNQPETEEIYPNVLVRDYARHIIEYSLQKD
                     EYSSDDIEIIRERITPPYRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTTEYGRGMCG
                     YGDFGRYTFEAKFRNWESYKFGNLINVDLLSNYACQMIFEQFGYDDKKHLEFDKETRS
                     RYWRRDDTNKIERIGKKYQWLALYEILARVMDNFPTFSNRYADEIGLEYITNLDNFYL
                     PKTQIKIVPPTKTDVFFQYINQKQCKTKHYFTIQNDELIDDWVKINDFPDVSNLLEVT
                     INDEQWLVLERHDDFRELAKFGQKETYDRQMWLQIRSYLVKESQFSKAKNWLAQQDFM
                     ERWMPEGNEHYGMNIHQFFAENTLNEWQEIYRHRENKSPSFKVIPSVDSHTWESTYGN
                     DGISFYAPIPMLYHGMKMKNAIKDGYWVDLQNNLVCFNPEINEKFQNSLLVKKDKFLD
                     FLKEHKLKLVWTVLGEKHAYKESKFLQELSGVYYLYGKNQQVQGSIKHFIQEIEHWGE
                     KQ"
BASE COUNT         1117 a          713 c          558 g         1237 t
ORIGIN      
        1 tttctttaaa aatactcaat tagcttttac ttgttccaac acaaacccta caaacgcccg
       61 cacaatgcta gacggataac gatgggcggc ataaatcatc gtcaaatcaa atttggggtt
      121 ttctgtctca cccaagactt ccaccaagcc attttctgcc accaatctat ccaccgtgct
      181 gtcggcaagc agagccactg ctttttgcca tatattcaat ggcatagctg tcattgctgg
      241 aaaaaagata gggaatttct accgcttgtc tgccagtgcc tagcgtgatg acgcttgctt
      301 cattttttgc ccaagcggca atggggaaat ttttcaaatc tttgacggtg ctgggcgtgc
      361 caaagcgtgc caaaaattta gggtgtgcca cccatttact gccgatttgc cccacttttt
      421 tggcgataaa ctgttcgccg tgtagttgcc caatccgaaa cgccacatca atgccatctg
      481 ccgacaaatc caaaagacgg tcggtcagcg tgcaatgcac ttgtacttgt ggataagctg
      541 cctgaaaatc agctatccac gccaaaacag gctcgcaggc agggcttgcc gacaggcgta
      601 atttaccctt taaattgcct tgctcttcaa acaacacttc tttggcagtg gcaagctgtt
      661 caatggacaa atgcacctgt tcatacaggc gttgccctgc cattgtgggt ttaacgcctg
      721 atttttggcg gtcaaagagt tgaatgttaa gctctttttc caaatcggca atttgacggc
      781 taatggttgc aatcggcaca ttgagtcgct cggaggcttt ggagagactg ccgtgctgga
      841 taacggcgac aaagaggcgg agggtgttga ggttcattgt ttttctcccc aatgttcaat
      901 ttcttgaata aaatgtttaa tactgccttg gacttgttga tttttaccat atagataata
      961 aacgcctgaa agttcttgta aaaatttact ttctttataa gcgtgttttt cacccaacac
     1021 agtccaaact aactttaact tatgctcttt taaaaaatcc aaaaatttgt cttttttaac
     1081 cagtaagcta ttttgaaatt tttcatttat ctctggatta aagcaaacca aattattttg
     1141 taaatcaacc caataaccat ctttaatcgc atttttcatt ttcattccgt gataaagcat
     1201 aggaattggc gcataaaatg aaatgccgtc attgccataa gtagattccc aagtgtgaga
     1261 atcgacacta ggtattacct taaatgaagg cgatttattt tccctatgtc gataaatttc
     1321 ttgccactca tttaatgtat tttcggcaaa aaattgatga atattcattc catagtgttc
     1381 attaccttct ggcatccatc tttccataaa atcttgttgt gccaaccaat tttttgcttt
     1441 tgaaaattga gattctttaa ctaaataact tctaatttgt aaccacattt gcctatcata
     1501 agtttctttt tgcccaaatt ttgctaattc acgaaaatca tcgtgtcttt ctagaacaag
     1561 ccactgttca tcattaatcg ttacttccaa aagattacta acatcaggaa aatcatttat
     1621 ttttacccaa tcatcaatta attcatcatt ttgaatggta aaatagtgtt ttgttttaca
     1681 ttgtttttga tttatgtatt gaaaaaatac atctgtttta gttggcggta caattttaat
     1741 ttgggttttg ggtagataaa agttgtccaa attagtaata tattcaagcc ctatttcatc
     1801 ggcatagcga ttagaaaaag taggaaaatt atccatcacc cttgccaaga tttcatacaa
     1861 agccaaccat tgatatttct tgccaattcg ctcaatttta ttagtatcat ctcttcgcca
     1921 atatcttgaa cgagtttctt tatcaaactc aaggtgcttc ttgtcatcat agccaaattg
     1981 ctcaaaaatc atttggcaag cataattact taataaatca acattgatga gattgccgaa
     2041 tttataactc tcccaatttc ggaatttggc ttcaaaagta tatctgccaa aatcaccata
     2101 tccacacata ccacgaccat attcagttgt cattgaacgg ataatgattc tttgtccatc
     2161 agaatgatat tttttatcaa tttcttcatt ggttggtaag ttttggggaa atgaacttct
     2221 ataaggtggc gtaattcttt ctctgattat ctcaatatca tctgatgaat attcatcttt
     2281 ttgcaaagag tattcaataa tatggcgagc ataatcacga accaaaacat tgggataaat
     2341 ttcttctgtt tcaggttgat taaatatttg attatctatc tctaatgcaa gtgcttttaa
     2401 gccagatgaa ttttcagaat aagcaacagc tccgtgaatg gcagataaaa taccttccat
     2461 aacataaggg tcattaacct ctataaattc cttgaataac gccaatgcaa tttccaatct
     2521 attccataat aaatgagcca gtgcattaat atagccattt ctacttcgtt tatcggtaga
     2581 agtaaatagc caactaacag caattgcacc caataatagt gcttcgggtt caatattttc
     2641 ttgaccactt gatttctgac accaagttag taatcgttca attgctgggc attgatcaga
     2701 ctccaaagca ataaaagctg tccaaatctc atctctatct gccaaagaaa aagaataaag
     2761 tttgttatgt aaatatttta tatttaatgg gtggttaatt tcggtagcca gttgatataa
     2821 aatattaatc caagttgctt gattaaaata tggactattt ttgaaaaatt gatgtagttt
     2881 ttgcatattg attttttcag gctgcctcca aaagagattt tctacaataa tctcaaacca
     2941 agaccattcc tttgaataat caatcacttc aaatacttca aaatcaaatc gttctggcaa
     3001 caatacactt aatgcttccc atacgccctt atcatagcca actctactat atagcttttt
     3061 tccttgttca gtgcttaacc attgaacaaa atcgtcttga ttatgaatat tttttaatat
     3121 taaattggcc ttttgataat ccccaattcg ttcataatta aaataaatat actcttcatc
     3181 tctgttatag taagcatttt tactaataac attttctttg attaaataat caagaaattt
     3241 tttggcatct gtttctgcaa tatctactat taattcatca caaattgctc tcttaaccgt
     3301 catataatcc aaactatatt tatcttcttc caattgtaat ttggcaataa cattagctgc
     3361 tctttgaacc agatgagaac caatatcctg ttcaatttgt tcacaaatgc gtttttcaat
     3421 accatctaaa taagatttta caatgtgatt aaatccctta tgaccttttg gaacacaggt
     3481 ttccccttga tacttcaaag attcacaaaa taattttaaa tataatgggt tggaaaattc
     3541 tggattaagc aaaggaatgc ttggtaattg caagccataa taaggaaaaa atatttgaat
     3601 ggcttcaaat tcattatcta taaac
//
LOCUS       DANMGB010000206         3620 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.207, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000206 DANMGB010000000
VERSION     DANMGB010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3620
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.207"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            75..998
                     /gene="oppB"
                     /locus_tag="PXG19_002366"
     CDS             75..998
                     /gene="oppB"
                     /locus_tag="PXG19_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL6067618.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            1013..1912
                     /gene="oppC"
                     /locus_tag="PXG19_002367"
     CDS             1013..1912
                     /gene="oppC"
                     /locus_tag="PXG19_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL6067619.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            1922..3517
                     /locus_tag="PXG19_002368"
     CDS             1922..3517
                     /locus_tag="PXG19_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067620.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
BASE COUNT          991 a          721 c          785 g         1123 t
ORIGIN      
        1 taatcaatat ctttacaaag ccgttaattt acgctattaa ttgcctacca atataactaa
       61 aaagagtggt gcttatgctg aagtttattt ttaaacgtct tcttgaggcg attccaaccc
      121 tactaattct gattaccttt tcctttttcc tgatgcggct tgccccgggt agcccattta
      181 ccagtgagaa agcctatccg ccgaaagtaa tggcaaatat cgaggcaaaa tatcacctga
      241 atgaaccgct gtataagcag tattttcttt atatggaaaa tctgtcaaaa ggcgatttcg
      301 gtccatcttt taaatataaa gatcaatcgg taaataatct gattgcttct gcgtttcctg
      361 tttcgataaa actgggcatt actgccttta tttttgcggt gcttatcggt ttaaccgcag
      421 gaactatcgc tgcacttaag caaaatagta aatgggatta tttagtgatg ggcttttcaa
      481 tgacgggtat tattatgccg agctttgtct ttgctccgct gttggtactc atgtttgcga
      541 tttatctcaa atggttgcct gccggtggtt ggaacggtgg tcagctctac tatatggttt
      601 tacctgttct ctctttaacc attagctatg ttgccggcat tgcccgtatt actcgtggtt
      661 caatgattga ggtgttgcac tctaatttta ttcgcaccgc taaggcaaaa ggcttgccaa
      721 tgcgtaaaat tattttcaaa cacgctttgc gtccggcatt gttgcctgtg atcacttatt
      781 taggcccggc ttttgttggc attattaccg gctcgatggt aattgaaagc gtgtttggct
      841 taccgggaat cgggcagttg ttcgtaaacg gagcattaaa tcgtgactat tcattagtat
      901 taagcctaac cattttggta ggtacgctca ccattttatt taatgcgatt gttgatattt
      961 tatatgcggt catcgacccg aaaattcgtt attcatagga gtaaagcgga aaatgcaaaa
     1021 ttcttcaaaa aatcaaccgc ttgttgaggt tacctcaacc attcaaggac gaagtttatg
     1081 gcaagatgca cgccgccgtt ttttccgaaa taaggcggct gtggcaagtt tgattattct
     1141 ttgttgtatt attcttttta ttacctttgc cccaatgcta atgccgttta gctatgaaga
     1201 taccgattgg aatatgatgg ggattgctcc ggattttgaa tctcaacact atttcggtac
     1261 tgattcttca gggcgtgatt tgctggttcg agttgcaatc ggtggacgca tttcgttaat
     1321 ggtagggatt gccggtgcat taattgcggt gcttatcggt acaatctatg gagcaatttc
     1381 cggttatttc ggcggtaaag tcgatatggt gatgatgcgt tttctggaaa ttttaagctc
     1441 attcccattt atgttcttcg taattttgct ggttacgttc ttcgggcaga atattttcct
     1501 gattttcatt gcaatcggta tggtagcgtg gctgaacctt gcccgtattg tacgtggtca
     1561 aactctttcg cttaaaaata aagagtttgt ggaagcagcg attgtgtgtg gcgtttcccg
     1621 ccgtcaaatt atttggcgac acattgtgcc taacgtttta ggcttagtgg tggtttatgc
     1681 ctcccttgaa gtaccatctc tgattttgtt tgaatcgttc ttaagtttct tagggcttgg
     1741 tacacaagag ccgatgagca gttggggggc attattaagc gacggagcgg cacaaatgga
     1801 aacctcgcct tggctactgg ctttccctgc ctttttctta tgtttaacac tgttttgttt
     1861 taattttatt ggtgatggct tgcgtgatgc cctcgatcca aaagataaat agaggtttag
     1921 aatggaatta ttagcagtaa ataatctcga tgtttattta aaaacggacg aagaattagt
     1981 tcacgcagtg cgtaatgtct cgttctcgat tgaaaaaggg caaacccttg cgattgtggg
     2041 ggaatcgggt tcgggtaaat ccgttacttc aatggcaatt atgcagttat tgcctaaaaa
     2101 tatcgtctca ttcggtgaac gctcaagcat catttttgaa gaacaaaact tgcttactct
     2161 atctgaaaaa gcaatgcaaa cagttcgagg tgatcgcatc ggtatgattt tccaagagcc
     2221 aatgacctca ctcaatcctt atatgccgat tggcaagcag gttgctgaga cggttcaaac
     2281 ccataatccg caaatcagca atgccgaagc ggaaaaaatg gtgttggaaa ctttgcaaaa
     2341 agtaaaaatt cccgatgcgg aaaagaaaat gatttgctat ccgcacgagt tttccggcgg
     2401 tcagctacaa cgaattatga ttgcaatggc aattatcaac aaacccgatt tattgattgc
     2461 cgatgagccg accaccgccc tggatgtcac aacccaagcg gaaattttgg atttaatgca
     2521 cgacttacag cgtgatatgg gaatggcgat tatcttaatt tcccacgatt tacgcttggt
     2581 gcataaatac agtgacttag tctgcgtaat gcaaaacggc gaaattattg agcgaggcga
     2641 aacggaaact gtgttcacca atccgcaaca tccttatacg gtggagctac ttaccccgat
     2701 tccaactaat ttaaaagggg aattaccgcc aaatgcacca accttgcttc agggtgagca
     2761 tattaaggta gattatattt taaaacgctc gctattcggt aagccgaaaa aggtgtttaa
     2821 tgcgttaaaa gatatttcat tgcacttgaa aaccggcgaa acgctcggca ttgtaggcga
     2881 atccggctcc gggaaatcta cccttgggcg tgccattatg cagattttag attatcgcgg
     2941 caatattaca tttgcaggta agacactggc taatctgaat aaagccgaac gtcaagccct
     3001 gaaaaaagat atgcaaatgg tgttccaaga cccgttcaac tcactttctc ctcgcttaac
     3061 agttggggaa attattgctg agggcttaac cgtacattgc cctcaaatga gcaaaaccga
     3121 acggcgggaa aaagtaatga aaatgttgga agaggttaat ctcaaccctg caatgattaa
     3181 ccgctatccg cacgaatttt cgggcggaca acgccagcgg attgcgattg caagggcaat
     3241 cattttagag ccgaaatttg tattgcttga tgagccaacc tcagcacttg accgctctac
     3301 tcagatcact gtaattgaat tgcttaaccg cttacagaaa aaatacggct taagttatat
     3361 tttcatcagc cacgatttgg cggtcatcaa ggcacttagc gaccgagtga ttgtaatgag
     3421 ccaaggtgag attgtagaaa gcggtgatgt cactcaaatt tttgaaaatc cacaacaaga
     3481 atacaccaag cggttgattt tagcctctaa tttgtaaccc cttccacaag gtcttattct
     3541 accaaaaaac aagaccttgt cattttatgc tagcaaaaca ttgtaatttt gatattttat
     3601 ttcaattttt tgaaaaaata
//
LOCUS       DANMGB010000207         3509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.208, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000207 DANMGB010000000
VERSION     DANMGB010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.208"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(17..139)
                     /locus_tag="PXG19_002369"
     CDS             complement(17..139)
                     /locus_tag="PXG19_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL6067621.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAAQ"
     gene            complement(219..1196)
                     /gene="rluD"
                     /locus_tag="PXG19_002370"
     CDS             complement(219..1196)
                     /gene="rluD"
                     /locus_tag="PXG19_002370"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL6067622.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1337..2116
                     /locus_tag="PXG19_002371"
     CDS             1337..2116
                     /locus_tag="PXG19_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL6067623.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2189..3220
                     /gene="tsaD"
                     /locus_tag="PXG19_002372"
     CDS             2189..3220
                     /gene="tsaD"
                     /locus_tag="PXG19_002372"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL6067624.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            3302..>3509
                     /locus_tag="PXG19_002373"
     CDS             3302..>3509
                     /locus_tag="PXG19_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6067625.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIA"
BASE COUNT         1060 a          745 c          683 g         1021 t
ORIGIN      
        1 aattcgaagc tttttgttat tgtgcagcct gctgaatttt atcgcccgct ttttcaacat
       61 cctcaccaac accatcaacg gtattacacg cagtcaagaa agttgcagct gctaaaatag
      121 ttaatactaa ttttttcata gaaagctcct tttttgttgt ttacttatga aaacgatttc
      181 aatatagcaa ctttacatta tttaagcaac acctaaactt aataatctaa ttgatcttta
      241 taaagctcat aatccgcttt tagtgcctga atcaattcaa taaaatcatc aggtaacggg
      301 gcgtgccact ccatcatttc accagtaatc ggatgctcta atctcaacat tgtggcgtgt
      361 aaggcttggc gttggaagcc tcgtaacacc gataaaaacg agtcactcgc acctttaggt
      421 gggcgaggtc taccgccata gagctgatca cctaataatg ggtgagcaat atgcgccata
      481 tgtacccgaa tttggtgagt acgccctgtt tctaatctta aacgtaaacg tgtgtaatta
      541 cgaaaacgct ccataatacg ataatgcgta accgccggtt ttcccattgg gtgaacagcc
      601 attgccgtac gtttagttgg gtggcgagcc attggctcat caacttttcc gccctgtgtc
      661 ataatgccgc tggcaatcgc ttcatattca cgggtaatac gacgtttttg taatgcggtt
      721 actaagtgag tctgtgccgg aatgttttta gccactacca ttaagcctgt cgtgtcttta
      781 tccaatcggt gaacaatccc tgctcgaggc acttctgcaa tcggtggata ataatgtagc
      841 aaagcattca gcactgtacc gtccggatta ccagcccctg ggtgaaccac taaatccttc
      901 ggtttattaa tgacgataat atcgtcatct tcatacacaa tatttagagg aatatcttga
      961 ggctcaaaac gaatttcctc ttctatttca gcggtaattt caacagtttc accaccaaat
     1021 actttttccc ttgctttatt cacgatattg ccattaactt tcactagatc actttcaatc
     1081 cacactttaa tgcgtgaacg agaatagtcc ggaaaaagtt gtgccagagc ctgatctagg
     1141 cgagcaccta gtaaatctgc agtaatttct gctgttaaaa tcttttgttg agtcattaaa
     1201 ccataaatcc taattagtca tttgcttact tgcgtgatgt tatatagaat agcgagatga
     1261 acttcataag ttattcttag tcagaggaca ttgtacatta acttttcgtc ctagacactt
     1321 tttataggta aaacatatgc gtaaatttaa atctcttgcc acattagtat tagccggact
     1381 gtttgttgca ggttgttcaa attcaaataa agaattagaa caatccaacg ttcaagatct
     1441 ttatggcaaa ggtcagacct atttacaaga tggagattat aattctgcca ttcgctactt
     1501 agaagcggtt ggaaccaaag gaggccaata ttcaggactt ggtgagcaaa cccaactaag
     1561 tttaatttat gctcaatata aagttggcga atactataaa gcacttgatg ccgcagaacg
     1621 ttttgctcgc tcttacccga atgcagctaa tatggattac gtattctatc tagcaggatt
     1681 atcaaatgca cgtctaagtg ataattttat tcaagacttc tttggtgtaa atcgcgcctc
     1741 tcgagccgta gataatgttc gtaatgctta cggtaacttc caaactattg tacagcgcta
     1801 ccctcaaagc caatatgcac aagatgctca aaattggatg aattacttat ttaaccgttt
     1861 agcggaacac gaattagccg ttgttaaatt ttatgatgaa cgtaatgcct atgtggctgt
     1921 agtaaaccgt atcgaagaaa tgttgcgttt ttacccgaat acactggcaa ccaaacaagc
     1981 attgccatac ttaaaagaag catataagca aatgaatatc ccagatgcag agcaaaaaac
     2041 ggaactcttg atccaagaat atgaaagcaa agagctaccg aatcctgaaa aactgaagta
     2101 tggcgaacaa ttctagtcgt acagagaata atgtgagggg cgttcttcgc cccttttggt
     2161 tttctaactt attttgactt ctccaactat gcgaatttta ggtattgaaa cctcttgtga
     2221 tgaaaccggt gttgccattt atgatgaaga caaaggctta gtggcaaacc agctttatag
     2281 ccaaattgat atgcacgccg attacggtgg cgtagtccct gaactggctt ctcgagacca
     2341 tatccgtaaa acgttgccac taattcaaga agccttaaaa gaggccaatc tgcaaccctc
     2401 ggatattgac ggcattgcct atactgccgg cccaggcttg gtcggggctt tattggtcgg
     2461 ctcaaccatt gcccgttcgc tggcttatgc ttggaatgtt ccggcattgg gcgttcacca
     2521 tatggaaggg catttacttg ccccaatgtt ggaagaaaat gcccctgaat ttccgtttgt
     2581 ggcattattg atttcaggtg gacacaccca actggtaaaa gttgacggcg ttgggcaata
     2641 cgaactactc ggggaatcaa ttgatgatgc tgccggtgaa gcctttgaca aaacaggcaa
     2701 actactcggt ttggattacc ctgccggtgt agcgatgtca aaattagccg aatccggcac
     2761 gccaaatcgt tttaaattcc ctcgtccaat gaccgacaga ccgggactgg atttcagttt
     2821 ctccggttta aaaacctttg ctgcgaatac gattaaagcc aatcttaatg aaaatggtga
     2881 actcgatgag caaaccaaat gcgatattgc ccacgcattc caacaagccg tggttgatac
     2941 tattttaatt aaatgcaagc gagcgttaga gcaaaccggc tataaacgct tagtaatggc
     3001 aggcggcgta agtgccaata aacaattacg agcagacctt gcggaaatga tgaaaaaatt
     3061 aaaaggcgaa gtattctacc ctcgcccaca attttgcact gacaacggcg caatgattgc
     3121 ctacactggc tttcttcgct taaaaaacga tgaacaaacc gacttaagca ttagcgtaaa
     3181 accccgctgg gctatgaccg aattaccacc gattaattaa cctttcaagc ggtgaaattt
     3241 cttgttaatt ttgcaaaaat ttaatcaaaa ataaccgctt gctatatgat agattaaatt
     3301 tatgaataat tatgtaatta gcctaacctc cgcacaggag cgtagaaaac atattgaagc
     3361 tgaattcggc aaacaaaata ttccttttca atttttcgat gcgattacgc cggatttaat
     3421 taaagaaaaa gccaaagcat ttaatattga catttcaaat acaaacttaa caaaaggtga
     3481 aatagcctgt gctttgagtc atattgcat
//
LOCUS       DANMGB010000208         3506 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.209, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000208 DANMGB010000000
VERSION     DANMGB010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3506
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.209"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            44..2020
                     /gene="cpdB"
                     /locus_tag="PXG19_002374"
     CDS             44..2020
                     /gene="cpdB"
                     /locus_tag="PXG19_002374"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL6067626.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2093..>3506)
                     /locus_tag="PXG19_002375"
     CDS             complement(2093..>3506)
                     /locus_tag="PXG19_002375"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL6067627.1"
                     /translation="KTSHRIQYPEGSQFLYSTFTPRSNIYAPFVTRVVSFGFQAFILK
                     YLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSGEHIAQLHQLGYLPIRIKAIPEG
                     KSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQPITSASIAFAYRKALAEFSEQT
                     CDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSFLGTDTIPAISFVTAYYGSQHLI
                     GTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLSIVADTTDFWHNITVNLPLLKQE
                     ILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERKGLIECLWDIFGGSINQKGYKVL
                     NPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVFGVGAQTYQRNTRDTLGFAIKAT
                     SITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDHYVDELTALDDFSDDLLEVVFEN
                     GKLVKSTNFDEIRQNIAQQF"
BASE COUNT         1168 a          662 c          709 g          967 t
ORIGIN      
        1 atattttaca atttaccctt tcatttcatt aaggagatat tttatgttaa atagaagaaa
       61 atttatccag cttggtgcaa ctgcaatgct tgtattgggg acacaaccgt ctgcatttgc
      121 acaaacagcc aaaaataaag ctggcttgcg tgtcatcgcc actacggata ttcacggttt
      181 cttaactgat tttgattatt acaaagatgc tccaacagaa aagtttggtt ttacccgtac
      241 ggcaagccta attaaacaag ctagagcaga agttaaaaac agtgtgttag tcgataatgg
      301 tgacttaatt caaggtaatc ctatttctga ctaccagtca accaaaggtg caaaagaggg
      361 caaacctgaa ccttcgatta tggcattaaa tgcgatgcaa tatgaagtcg gaacgctggg
      421 aaatcatgaa tttaactacg gtttaagcta tttagataat gctattaagc aagcaaaatt
      481 ccctattgtc aatgcaaaca ttgtgaagcc ggggacagat gaaccattct ttacacctta
      541 tgttattcaa caaaaagaaa ttgtagatga aaaagggaat aagcatacca ttaagattgg
      601 ttatatcggt tttgtaccac cacaagtgat gatttgggat aaagctaatc ttgaaggaaa
      661 agttgaagct cgagatattg tgaagaccgc acaaaaatat gtgcctatag taaaaaaaga
      721 aggggcagat attgtcgttg cattggcaca taccggccct tcagacgaac cctataaaga
      781 aggcgctgag aactgtgcgt tttatctagc tgatgtaaaa ggtattgatg cagttatttt
      841 cgggcattca catcgcctgt tcccaaataa agaatttgca aattcaccaa atgccgatat
      901 tgcaaaagga acaatgaaag gcgtaccgga aagtatggct ggctactggg gaaataacat
      961 cagtgtgatt gatttaagct tggccgaaaa cgatggtaaa tggggcgttg tggacggtag
     1021 agcagagttg cgtccaattt ataatacgga agagaaaaaa gcaaccgttg agaaccaccc
     1081 tgaaatcgtt gcattattaa aagaaaccca tgaagcaacc cgtcaatttg tgtctcaacc
     1141 tatcggtaaa gcaactgata atatgtatag ttaccttgcg ttagttcaag atgaccctac
     1201 cattcaaatt gtgaaccaag ctcaaaaagc gtatgtagaa aatgtggtaa aaggcttgcc
     1261 ggagcttgca ggattaccaa ttctaagtgc cggagcaccg tttaaagccg gtggacgtaa
     1321 aaatgacccg acaggctata ccgaagtcga taaaggcgaa ttaactttcc gcaatgcggc
     1381 agacttatac ctttacccaa ataccttagt ggtggttaaa gcaacaggag cagaattaaa
     1441 agagtggtta gagtgcagtg caggaatgtt caaacaaatt gatgtcgctt cggataaacc
     1501 gcaatattta ctggattgga caggtttccg cacctataac tacgatgtaa ttgacggtgt
     1561 cagctatcaa tttgatataa cccaaccggc tcgttatgac ggcgagtgca aattgatcaa
     1621 ccctaattcg caccgtgtgg tgaacttaac ctttgacggc aaaccggttg atcctaaaca
     1681 agaattctta attgccacca acaattaccg tgcttatgga gcaaaattcc cgggaacagg
     1741 cgataaacat attgtgttcg ccgcaccgga cgaaaaccgc caagtgttag cgaattatat
     1801 taccaccgaa agtaaagctc acgggcaggt aagtccgaaa gcggataaca actggcgtat
     1861 tgcaccaatt agctcaaatg caaaattgga tattcgtttt gaaacctctc caacagataa
     1921 agctaaagct ttcattaagg aaaatgcaca atatccgatg gagtatatcg aaaacgatga
     1981 aaccggcttc gcagtttacc gtattgattt aaccaaataa tcagagctaa atacaagcgg
     2041 tctaatttgc aaaaaaatta acaaatttga ccgcttgttt cattccattt ttctaaaatt
     2101 gttgtgctat attttgccga atttcatcaa aattggtcga tttgaccaac ttaccatttt
     2161 caaaaaccac ctctaaaaga tcatctgaaa aatcatccag tgcggttagc tcgtcaacat
     2221 aatgatcata agagattact tttactcgcc ctttttgcga tttttttaag ccgttatcgg
     2281 ttttaggagc tttgaaaatt gccttttcga caccgttaat tgtaattgaa gtcgctttga
     2341 ttgcaaaacc cagcgtatca cgagtattgc gttgataagt ttgagcccca acgccaaaca
     2401 caatattgct ggaagcaaaa ccttttgccg ttaagccctc taaaatccgt atcattttat
     2461 cataagtgac gccgtcacca taaattgccc caatatgcgg attaagcact ttataacctt
     2521 tttggttaat actaccacca aaaatatccc acaaacactc aatcagacct ttgcgttcgt
     2581 gttcaacggg ggaggaattg ttaccgcaaa taattgtaaa aaaatcaccg ctatcagggc
     2641 ggataaccaa ttttgctgat tccggtcgag ctaaaatttc ttgttttaat aatggcaaat
     2701 taacggtgat gttatgccag aaatcggttg tatctgccac aatagatagc atattatttg
     2761 gatattttgc cattaaataa cggaaagtcg gcagctcatc aacaccgtgt gaactcatca
     2821 ccgaatgttc tgatgccgga atagatgtac cgattaaatg ttgagaacca taataggctg
     2881 tcacgaatga aattgcagga atggtatctg tgcctaaaaa tgaggttaga tgtccggcac
     2941 cggagctttc tgctgattct aaggaactca ttccacgcat agagaaatcg tgtgcctgga
     3001 agggtagatg gctattatca tcacaggttt gctctgaaaa ttcggctaga gccttacgat
     3061 aagcaaatgc aatggaagct gatgtaatag gctgccataa tgacacatta atcagggttt
     3121 ccaaataatt agtcagccaa aaaaagcttg agtgagtgtt ttcaattgtc attaaaggaa
     3181 ctttcactgc aacagatttt ccttctggaa tagctttaat tctgataggt aagtaaccga
     3241 gctgatgcaa ttgtgcaata tgttcgccag agtcctcaat attcaatgtg tcagaaataa
     3301 attgagtata ttcagaaaca acgtcatgtt gtgagcgaga aaaaaaatta tcgttaaaat
     3361 aatgaatcaa gtattttaaa ataaatgcct gaaagccaaa tgatacaaca cgtgtaacaa
     3421 atggagcata aatattacta cgaggtgtga atgtactata taaaaactga gaaccttcag
     3481 gatattgaat tcgatgtgaa gtttta
//
LOCUS       DANMGB010000209         3478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.210, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000209 DANMGB010000000
VERSION     DANMGB010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.210"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..353
                     /locus_tag="PXG19_002376"
     CDS             <1..353
                     /locus_tag="PXG19_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL6067628.1"
                     /translation="NKADFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILFPLGL
                     ILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAAVFMA
                     MVLLAITWILILFC"
     gene            390..2033
                     /locus_tag="PXG19_002377"
     CDS             390..2033
                     /locus_tag="PXG19_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL6067629.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(2240..3109)
                     /locus_tag="PXG19_002378"
     CDS             complement(2240..3109)
                     /locus_tag="PXG19_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6067630.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(3119..>3478)
                     /locus_tag="PXG19_002379"
     CDS             complement(3119..>3478)
                     /locus_tag="PXG19_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6067631.1"
                     /translation="LGWQELENGIRMNVMSFETTPAEGKKAELHRKFIDIQLLIDGEE
                     MIEYGLSQPDLSKYDEYRDEDDYQLTAEIDDKNNLILKPNMFAIFLPYEPHKPGNSVN
                     GNKTLKKLVVKVPVELI"
BASE COUNT         1110 a          674 c          637 g         1057 t
ORIGIN      
        1 ccaataaagc agattttcaa cgtgtgatca atgcagctgg ctactctatg aaggggttaa
       61 aagccgctta tattaatgaa gccgcctttc gccaagaaat ttggtgcgct actattttat
      121 tccctctagg gcttattcta ggcgaaacca atattgaaaa agcattatta gtaggcacag
      181 ttttacttgt tttagttaca gaactactca atagtgcggt tgaatctgtt gttgaccgca
      241 ttggggctga tttccacgag ctttctggta gagctaaaga tattggctct gcagctgtat
      301 ttatggcgat ggttttactc gctataactt ggatattaat tttgttttgt taactctatt
      361 tttcaaccaa cactcttact gaggtattta tgcgcttaaa aaaaacatta ctttcggtag
      421 cactacttag tgcaacatca gcaatggcct acgagacagg taaaacatat cgttttacgg
      481 ttttacatac taacgatata cacggtcact tttggcaaag tgataaaggc gaatacggtc
      541 tcgctgctca aaaaacattg gttgataata ttcgcaaaga ggtcgcagaa aaaggtggtt
      601 cggtattaat gctgaatgca ggtgatgcga atacaggcgt gccggagtca gatatgcaaa
      661 atgcacgtcc tgatattgaa ggaatgaatg cgattggtta cgatgcaatg gttctaggta
      721 atcacgaatt tgattaccca ctgcaaattc tctctatgca agaaaaatgg gctaaattcc
      781 cctttatttc ggccaatgtc attaataaaa aaacggataa acccattgta aaaccttacg
      841 tgatgttaga acgaggcgga ctaaaaattg ctgttatcgg attaacaacc gaagataccg
      901 caaaattagg taatccagat gtaacggaaa atgccttttt caaaaaccct attgaaacag
      961 caaaaaacac attagctgaa attaatcaaa aagaaaaacc cgacgtacgt atcgctttaa
     1021 cccatatggg ttactatttt gacggtaaac atggtactaa tgcaccaggt gatgtaacaa
     1081 tggcccgtac cttagaaaaa ggagcgttcg atttaatcat tggcggtcat acccacgata
     1141 ctgtttgtat tgatgaaaaa ggtcaattca aagccaaata tacgccgggt gaggaatgta
     1201 aaccagactt ccaaaacggt acttggattg tgcaagccgg cgaatggggc aaatttgttg
     1261 gacgggctga ttttgagttt aaagatggaa aagctacctt ggtaaaatat gaattaattc
     1321 cggtcaactt aaaaaaaacc attaaaaaag aagacggtac taaagaatac cgactttacc
     1381 agcctgaaat caaagccgat gaagcaacct ataccttatt gaaaaaatat caagatgagg
     1441 gcgataaaaa gcttaatatt gaagttggtc gtgtgaaagg gttattagac ggcaaacgtg
     1501 agcatattcg cttccaacaa accaatctcg gtcgtttaat tgcacaatcg caaatggaaa
     1561 gggtaaaagc cgatatcggg attatgaact ccggcggtat tcgtacctcc cttgaagaag
     1621 gtgtaataac ttataaacat attctgactg ttcaaccttt cggtaatatg attgcaacgg
     1681 tggatttaaa aggacaagaa ttgttagata ccctcaccac tattgctctg aaagaagttg
     1741 atactggcgc ttatcctcaa tttgccggca tttcaatggt agtcgaccgt acagcaaaaa
     1801 ctatttctga tgttaaaatc ggtggcaaac cttttgataa agagaaaact tataaagttt
     1861 ctctgcctga ctatgttgcg gctggtggcg atggctaccc attactgaaa aaacacccta
     1921 gctatgtcaa tacaggcttt attgatgccg aaatgctgaa aaaattcttc gaagaaaata
     1981 aaattattga ggcagataaa tacgatccaa aaaaccagat cattttcaaa tagagctata
     2041 gaaaatgaaa ctcactctgg cagtctctgc tcaaaagagc tgtggctgcc tgtagattgt
     2101 tttcttactt tcaagtgtta taggaaatcg ataaaaaatc cctaccaaat taattcatca
     2161 ccatatgatg aaaattaaaa aacctctggc aatactttgc caaaagtctt tgacttttat
     2221 agggtaatat cactgcttat tagcctttaa cacgttgttc caaaatcaca ttcagtgttt
     2281 tttgtttctg tttcaacgca ttttcgggtt cggctttaac tagtaaggta taaattaaat
     2341 caagaacgaa aagttgtgac attttagtac cgatagaatc tccttgcata tgcccctgtc
     2401 gattaccatt aattaacaca taattagcct cttccgtgac gggggaacgt aaattgtgtg
     2461 taatcgcaac cgttgtcgct ttatttgcac gagaaaaacg tagtgatttc acaatttctt
     2521 cagaatagcc tgaatgacta atccctataa ctaaatcccc ctctttcacc aatgccgcct
     2581 gcatatacat aaaatgatta tttgtgactg catcggtttg tagcccaata cgcattaatt
     2641 tatgttttgc atcttctgcg gttaacccag aagaacccac tccaaataaa aagatccgtt
     2701 ttgccttacg taattcttca acaacttttt ccaacacgtt aaagtcaagc aaattaatag
     2761 tctcttcaat aacgttatct aaactcactt tgagcttctc agcaatatct ttcgatgtat
     2821 ccgattctga aacatccgta tcaagcaata ctctattatc ttgattttgc gtagccaact
     2881 ctattgcaag ctctaattta aagtcggtat aacctttaaa acctaatgta cgacaaaaac
     2941 gaataaaagt tgcttcacca acatctaatt gtttggccac ttcagataat gaacattggc
     3001 taagtaattc cggctgagat aaaatagcag cagctatttt cttctctgtt ttggttaaac
     3061 tattttgtag cgagctaatt gtattaagaa tttttccccg actagacata gtagcctcct
     3121 aaatcaattc aacaggtact ttcaccacca gttttttcaa tgttttgttg ccattcaccg
     3181 aatttccagg cttatgtggt tcataaggga ggaaaatagc gaacatattt ggcttgagga
     3241 tcaagttatt tttatcatca atctcagctg ttaattggta gtcatcttca tctcgatatt
     3301 catcatactt agataaatct ggctggctta acccgtattc aatcatttct tcgccgtcta
     3361 tcaataattg aatatcgata aattttcggt gtaactctgc ttttttcccc tcagctggcg
     3421 tagtttcaaa tgacattaca ttcatgcgaa taccattttc taattcttgc cagcctaa
//
LOCUS       DANMGB010000210         3436 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.211, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000210 DANMGB010000000
VERSION     DANMGB010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.211"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            320..697
                     /locus_tag="PXG19_002380"
     CDS             320..697
                     /locus_tag="PXG19_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6067632.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            1427..2203
                     /locus_tag="PXG19_002381"
     CDS             1427..2203
                     /locus_tag="PXG19_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6067633.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            2807..3301
                     /locus_tag="PXG19_002382"
     CDS             2807..3301
                     /locus_tag="PXG19_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6067634.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
BASE COUNT         1164 a          554 c          638 g         1080 t
ORIGIN      
        1 caataaaggc acacttcttt cttcagtgtc tttagcgttg cgatttaaat ttaattacat
       61 tttttatagg aaagacaata gaaatgaaga tcaaaaaata tgtatttcac ctgacttata
      121 caacacttat ctgcccctta cctagggtat tcgcagagga aggttatatg ttagatacgg
      181 ttgaggttaa agcccaagca ataaaaaaac agatgaagtt ttcattaaaa caggggcaat
      241 aagcacccga gataaaatct tggaatcaaa ccaaagctta gagactattg ttcgttctat
      301 gcctggcgca tttacacaaa tggataaatc tcaaggtgtg gtttctgtta atattcgagg
      361 aggttctgga tttgggcgag ctaataatgc agtaggccca aattatatgg gaatgctcgc
      421 tggcaaatac caattcaatg actctacttg gataggagca ttatttgggc atagttggcg
      481 caaaatctct caaaattata aaataggagg cggacgaaaa gttacggata gctcgattga
      541 ccttagtaaa attgatgatc tagataaaga aagttctacc acctcaccgt tcaatgcagc
      601 tcatttaaaa caaaaaccaa tgagtcgtat ggctaaattg gaatatggcg ataaatacca
      661 aaccatcaca ctattaccaa agtcaggtag cgggtagaca tttaaaaaac caaaacaacc
      721 agttaaatta tcgttttcac ttgcccgagt caccttggtt agatgttcaa gtggcctatg
      781 cggaaaatca aggcaaacaa aactacaaca aagggagctg aattaataat aaatatttaa
      841 ttcaaggttt ggcaattaac aacaaagcga caaccttaaa tttgagtaac acctttaaag
      901 tgtctccgtt taaagatgga gaatgggaag caatattagg ttttaatcgt ttaaagaacc
      961 gctatagtaa aaatagacat cctgcggaat taaactataa cttagagaat ggcgaaacca
     1021 gcgaaaacaa cgattctgta ggaatgacag ccgttcgtaa atcgctttat acttcaactt
     1081 tccagcctga tggcgaacag aagttcgata ctttttatct cgacaatcac tttaactatg
     1141 gtatatgggg attggatata aacgcaaata ttaataccgc tcggtttatt ggtcagcgtt
     1201 ttaaatattt tccttttgcg attagagaat tggagtcaga tattagacag gcaagtagaa
     1261 ataggcagtt tgagcattta aggtcattac aatctcaatt agacaacttg caaaaaaaca
     1321 ttgtacatat attccagatg aggattttcc taatgatcct gaattgggag agtttaactg
     1381 tcctgatgtc aattttcctc atacagcaac aggaaaacat aaacgaatta attattcagc
     1441 aaccttgtct gcttatattc acgatttatt cacgcccttt attagttatt ctcaaacaca
     1501 tcgagcccct aatattaaag aaatattctt ctctaattta ggtgactatg gtgtaaatac
     1561 cgcactacaa ccagagcaag cgaaaacaac acagtttggt attaatggat tcaaagaacg
     1621 ggtatttagt gaagaagata aattaggatt taaagtgcta ttttataaca ctcacttaaa
     1681 aaactatatt tataatgtac aacataccgc tgttggtagt gctcctagtt tattcatttt
     1741 ccacaaaaac tatgaaaaac cagtaaatat caaagggata gaattagaat ttagttatga
     1801 tataggctct ttctatggca acttagctta tgctcgtcaa aatacgaatc aacccgtatc
     1861 ctttacagat gcaagttcaa gggtagatgc cgcttctcat tatggtttta aaactcaagg
     1921 ttttggtgcc agcaaaattt cagcgttacc aagagactat ggctcattgg agttagggac
     1981 aagatggttt gatcaaagac tacaaattgg cggagtggca aaatattacg gaaaaagtaa
     2041 acgtattgcg atagatgagt ttaactatac ttattatcct ggaacacata ttgtgaaaga
     2101 aactcatcgg cttgaagaaa ccgtaaataa acaacctatt attgttgatt tttacgtgag
     2161 ctacgaacca atcaagtcgc ttatattaaa gttagaacta taaaatgtct ttgacaaaaa
     2221 gtacattgat cctcttgatg ctaataatga tgcagcaagt cagagggttt acaattctga
     2281 tatcagtgat gaacctattt atacgctcaa taattatgca agagggagaa ctatagtgtt
     2341 tagcacaagt tataaattct aaatggggtt gtcctagata agctagctta aatttccttt
     2401 aactaattat ttggcatagt gactaaaatt gagtctgcac agtaggttaa aaccttataa
     2461 tataaggatt taacccagat ggtgcaagcg tccacgcttg tgccagttaa ttcctgttct
     2521 gaaagtattt cagtcataag ataaaagcct aaatcagcca agtaaaattt ggtttatttg
     2581 ggcttttgtt tttggcacaa gcgtggacgc ttgcgtcatc attttattta tccatccatt
     2641 gctatcattt cagtatttct ttggcttatc acaagcggtt aaattttatc aacactttgc
     2701 aagttttaat gatttttgcg atctagatcg aaaaagttat attggcttgt ggaatttaat
     2761 tttgaatagg gtatttttct tattcctttt taagttgaga aaggctatga gccgaaaata
     2821 taaattccac gaaaagagcg gtgcttattt tgtcagtttt gcaactgttt attgggttgg
     2881 tgtgtttgtg agagagattt attttcaggt aattgttgat gccttagatt actgcagaaa
     2941 acataaggga atgattttgt atgcctattg tattatgcca actcatatcc atttattatt
     3001 tcaagcagaa aatcaaaatc cttctgattt aatacgagat ttcaaaacat tcaccgctaa
     3061 aatacttatt cagagaatta aagataattt gcaagaaaac cgtcgggaat ggttgctgtg
     3121 gatgttttct cgggcggctg aacgacgttg taatgtaaaa caatatcaat tctggcaaca
     3181 tcataaccaa cctattgaaa tctattcgca gaaattcttt gatgaaaagt taaattatat
     3241 tcatcaaaat ccagtggtaa gtggttttgt gtctgagcct tgggaatgga aatataattg
     3301 aaataaactg cttgtatttt tgcgatctct gtcgaaaaat tgtgaatttt tacttgtctg
     3361 tcggagaatt ttgcgtaaat tctgcttatt atgttttagt taaaggtatt ctatgagtag
     3421 ataacccaaa tgaaaa
//
LOCUS       DANMGB010000211         3424 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.212, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000211 DANMGB010000000
VERSION     DANMGB010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3424
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.212"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(157..987)
                     /gene="fghA"
                     /locus_tag="PXG19_002383"
     CDS             complement(157..987)
                     /gene="fghA"
                     /locus_tag="PXG19_002383"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL6067635.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(1067..2125)
                     /locus_tag="PXG19_002384"
     CDS             complement(1067..2125)
                     /locus_tag="PXG19_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL6067636.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(2312..3247)
                     /locus_tag="PXG19_002385"
     CDS             complement(2312..3247)
                     /locus_tag="PXG19_002385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL6067637.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
BASE COUNT          967 a          742 c          747 g          968 t
ORIGIN      
        1 ttattaaagc acgacttttg ttgtatttca aacctttgtt tttatacaaa acaaccgtgt
       61 tgtaaaaaat gatcgtaaac tgaccgcttg taatgcactc tgaatatatc gaaacatgat
      121 aaaaatgata aagcatgttt cgataattta ctgtctttag tcttttaaat gttttgcatg
      181 aaaggctata tgttcaccga taaagctact aatgaaatag tagctgtgat cgtaaccatc
      241 acgtaaattg aattggtagg gtattccaag tctatctgcg gtttcacaga aaatttccgg
      301 ctttaactga tcgctcaaaa agctgtcttg gctgccttga tcgattagaa ttggcaagct
      361 tgggcgatat ttttccagca atgccacgct atcatacgcc ttccaagcgg tctgatcttc
      421 gcctaaatat gctaaaaatg ctttttgccc ccaaggaact tgggttgggg cgacaatcgg
      481 tgcaaatgcc gatacacttt gatattgccc cggattttta aatgcaatgg ttaaggcacc
      541 atgtccgccc attgaatgcc caaaaattga ttgtttaccg ttagtcggga aatgagcatt
      601 aatcaatgtt ggcagttcgc tgacaatgta atcatacatt tggtaatgtg ttgtccattc
      661 gccttgcgta gcatttaggt aaaatccggc accctgacct aaatcataag cctcatcatt
      721 agcgacattc acacccctag ggctggtatc cggtgcgacc acaatcagat gatgttcgtc
      781 ggcataacgt tgaaagccag atttagtgat gaagttctgc tcggtacagg ttaaaccaga
      841 aagccaatat agtacgggta gcttttgtgt tttagcagat tgcggcagat aaatagcaaa
      901 tttcatttca cagtttaagc tggctgagaa atgttgccaa acctgttgtt caccgctaaa
      961 acagcggtag ttttcaaatt gttgcataat attccttaca agcggtttaa ttccgctgat
     1021 tttttgcaaa aataaaggcg gaactcaccg cctttatatt gtaatatcaa cctttcaaac
     1081 ttcccatatc aatcacaaac cgatatttca cgtctgattt cagcattcgt tcataagcat
     1141 cattgatgtt ttgcatatca atcatttcca catccggcac aatgttgtgt tcggcgcaga
     1201 agtcgagcat ttcttgagtt tcctgaatgc cgccgatgac agaggcggaa atagagcggc
     1261 ggcctaaaat catcggtacg gtgttgatgg tttgctccaa ctcaccgacc aagcccacca
     1321 gcaccaatgt gccgtccaac gctaaggttg ggatataagg tttcaagtcg tgggtataag
     1381 gcacggtatc gatgattaaa tcaaaggtat ttgcaacgtc tgccatttgc ttttcatcgg
     1441 tagaaagcac cacacggctt gcgcccaaac ggtaagcatc atcggcttta cccagtgagc
     1501 gagtaaaaag cgtaacttcc gctcccattg ctttggcaag tttaaccgcc atatgcccca
     1561 gtccgccaag ccccacaaca gcgacttttg agccagcttt gacattccaa tgacgcaggg
     1621 gcgaataggt ggtaatgcct gcacacaaaa gaggggcaac cgctttggtg tccaagtttt
     1681 cagagacttt taatacaaaa tcttcactca ccaccacgca tgtgctgtaa ccgccttgtg
     1741 ttggtgtgcc gtcaaagcgg tcaataccgc cataagtgcc gatgttgccc acttcgcagt
     1801 actgctccaa accgtgctgg caaggactgc attcacggca ggaatccacc atacaaccga
     1861 caccgaccaa atcgccgatt tggaattttt tggcgttttt accgactttg ataatacgac
     1921 cgatgatttc gtgccctggt acaagcggat agctttgcgt ccagccccaa tcattgcgag
     1981 ccatatgcaa gtctgaatgg cacacgccac agtacaaaat atcaatcaaa acatcgtctt
     2041 caagcaattc acggcgttca aaactgtgtg gggcaagtgg tgtggttgcc gaaaaagtgg
     2101 cgtaggattt gatagggtaa gccatttttg gggtttaaat ggctgaaatg gcaattacta
     2161 tagtgccgat gatttattat tgaaaatcaa gatttttgat aaatcggtat cagttaaaat
     2221 gataattggg ggttttcaga ctgactgaaa aattattttg cccattttaa aaacaaaaac
     2281 accgccctca tcacaaaagc ggtgtttttc atcaaaattg tgtcaaagca tactctgcca
     2341 attctgtaag cacttcatca gcaggacgct gagtgggttt taaattgagt gccaaatgtt
     2401 tcacgccttt ttcttgttct tttgcccaaa agtctgccaa gccttttgca ccaccacgca
     2461 gataaatgtt gttaaataac tgtgctttgg cgtttttgtc gtccaaaact tccacaaatt
     2521 gagcatagcc aaatgctgtg ggggtgtctt tttggcgtaa atcggcaagg gtgttgatga
     2581 tgtttgcggt gtcggcagga ttcacaccgt gccaaatcca cgcatcaggt acattagcaa
     2641 gccagtccat ttcttgcctt gctcgtccaa tcgccacaat gggcaagcgg tgtttgggtt
     2701 tggggagcaa atccaaattg tctgttaaat cggcataatg tttgcctttg aaatggggaa
     2761 aatcctgctc ggttaaggtg ttaatcaaat caatgctttc acgaaaacgc tcgctacgag
     2821 aggcaaaatc cgccccaaat gcagggtatt ccacaggtct atcgccagag gataagccca
     2881 ataaaaaccg tccatgactc aaactatcca cacttgtcgc cattttggca atgtgaatgg
     2941 gactacgcaa aggggcaatc agccctgccg tgccaagggc gatgttttgg gtgtgggcgg
     3001 acaaaaaacc aagtgtaacc atcgggtcaa gcccttgccc cacatcgcca aaatgagggt
     3061 cataaaacgg cacatctcgt acccacaatg ctgaaaagcc caagttttca gccagccgtg
     3121 cattgtcggc aatggtggtc aaattgtctg gaatgtgatt ttgatagccc ataaaggggg
     3181 caattaagcc cagtgttaat tgattttgcc caaaaacttg ggagaaaatg ggggaaagcg
     3241 tgttcatttt ggcgtacctg tcttatttaa gataaggtat tttaagggct tttgagtttg
     3301 cttaaaatgg gataaattga gaaagtgttt tgctaaattg gcataaatag acgctttcaa
     3361 gctgactgaa aatttgcaaa atttttaata aatatttcaa acttaagtga gcataaggct
     3421 tatt
//
LOCUS       DANMGB010000212         3363 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.213, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000212 DANMGB010000000
VERSION     DANMGB010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.213"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            23..337
                     /locus_tag="PXG19_002386"
     CDS             23..337
                     /locus_tag="PXG19_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL6067638.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            350..862
                     /gene="hpaC"
                     /locus_tag="PXG19_002387"
     CDS             350..862
                     /gene="hpaC"
                     /locus_tag="PXG19_002387"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL6067639.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            980..1852
                     /gene="tehB"
                     /locus_tag="PXG19_002388"
     CDS             980..1852
                     /gene="tehB"
                     /locus_tag="PXG19_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL6067640.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            1990..3027
                     /gene="purM"
                     /locus_tag="PXG19_002389"
     CDS             1990..3027
                     /gene="purM"
                     /locus_tag="PXG19_002389"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL6067641.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            3105..>3363
                     /locus_tag="PXG19_002390"
     CDS             3105..>3363
                     /locus_tag="PXG19_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL6067642.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFY"
BASE COUNT         1024 a          656 c          715 g          968 t
ORIGIN      
        1 acactcaaat tagaataacg aaatgaaaaa attaacccct gatgaagcca ttgatattgc
       61 ctacgatatt ttcttagaaa tggcaggcga aaatttagat cctgccgata ttttactgtt
      121 caacctccaa tttgaagagc gtggtgcagt ggaaatggtc gaaacttctg aagactggga
      181 tcaagaaatc gggactttaa ttgaccctga tgcctttgcc gaagtttggg ttggcttagt
      241 caatgaacaa gatgaaatgg acgatgtatt cgcccgtttc ttaatttccc acgatgaaga
      301 aaaccgtgaa tatcacgttg tttggaaaga aaaataaaaa ggagaaaaaa tggctaatat
      361 cgacactaat caaccaatag aagcctcgct taaatttcgt gaagcaatgg ctcacttatc
      421 ttctgcggtg agcattgtga caaccaatgg cgtagccggc aaagcagggc tgacggtttc
      481 gtctgtttgt tccgttaccg attccccacc aacgctctta ttttgcatta ataaaaacag
      541 ccacgttcac gatattatcc aacaaaacgg caaagtatgc gttaatgtgt taagccacga
      601 acaagaagac ttagcaaaac attttgccgc cattttagaa agtacaatgg aagaacgctt
      661 tggttgggat atttggaaca acggctttga cgatcagcct gtgttacgca gtgctatttc
      721 tgctttacaa ggcaatattg ttgatacgca cgcagtgggt acgcatacta tttttgtggt
      781 agaagtgagc catattgacg tagagccgaa ccacagttta gtttattttg cccgccaatt
      841 tagaagcgtg aacattgact aaaatatatt taacagaaat ttgatcaaat ccgacttttt
      901 tagtcggatt ttttatttcc tgtttttaaa acagtgctaa aattttgccg tttatgtttg
      961 actgacaaaa ggaaacaaaa tggaaaattt aatttgctac aaacaaatgc cggtgtggac
     1021 aaaagcaacc ttaccacaaa tgttccaaga aaagcacaac accaaagtcg gaacttgggc
     1081 aaaactcacc attctcaaag gttctctcaa atattatgaa ttaaccgaag agggagaaat
     1141 tatcaaggaa gatatttttg atgcaaacca ccaacgccca atggttgagc ctcaactttg
     1201 gcataaggtt gaagctcttt ctgacgattt agaatgccag ttggctttct attgcaagcc
     1261 ggaagattat tttgctaaaa aatataatct gaccgctacc cattcagaag tgctaaatgc
     1321 cgtcaattat accaaaggtg gcaaagcgtt agatttaggt tgcgggcgag gacgcaatgc
     1381 actttatctg aatttactgg gttttgatgt cactgctgtt gatcataatc aagaaagcat
     1441 tgattttctc aactatatga tcgaaaaaga acaagctcaa aacattacta ccgctgttta
     1501 tgatattaac gaggcaacta tcggctcgca aaacggtgaa tatgacctga ttatttccac
     1561 tgttgtaatg atgttcttaa accgtgaacg cattcctgcc attattgaga atatgcagaa
     1621 aaacactaaa gtcggcggtt ataacttaat cgtatgtgca atgagtaccg atgactaccc
     1681 ttgcccgatg ccgttctcct ttaccttcaa agaaggcgag ctcgccgatt attatcaagg
     1741 ttgggaatta gtcaaatata acgaagattt aggacattta cacaaaactg atgaaaacgg
     1801 caaccgcatt caactacgtt ttgcgacaat gttggcgaaa aaaatcagct aaacttaacc
     1861 gcttgcaggg ggaattagct tccccctaat tcatcaaatc cattctattt attttcactt
     1921 tttcattccg caaacgtttg cttgtgctat aatggcttcg ttttttagtc atttactgtt
     1981 gaggttaaag tgagcaacac acaactaagt tacaaagatg ccggcgttga tattcacgca
     2041 ggaaacgagt tagtcgaacg aatcaagcct gatgttaaac gcacccgtcg ccctgaagta
     2101 atgggcggat taggtggttt tggtgcttta tgtgctttac cgacaaaata taaagagccg
     2161 attttagttt ccggtaccga tggcgtcggc acaaaattac gcttagccat tgacttaaac
     2221 aaacacgata ctatcgggca agatttggta gcgatgtgtg tgaatgacct tgtcgtgcaa
     2281 ggtgctgaac cgcttttctt cttagattat tacgccaccg gtaaattaga ggttgatgta
     2341 gccaccaatg tcgtcaaagg cattgcagac ggttgcgtga tttcaggttg tgctttagtg
     2401 ggaggtgaaa cggctgaaat gccgggaatg taccacgaag gcgattacga tttagccgga
     2461 ttctgtgtcg gtgtggtaga aaaatctaaa atcattgacg gttcaacggt gaaaaccggt
     2521 gatgccttaa ttgcattagc gtccagtggc ccgcattcca acggctattc gttaattcgt
     2581 aaagtattgg aagtcagccg atccaatcct gcaaccgatt tattggaaga caaaccctta
     2641 agcgaacact tattagcccc aactaaaatt tatgtaaaat caatcctaaa attagttgaa
     2701 gaagttgatg ttcacgctat cgctcactta accggtggcg gtttctggga aaatattcca
     2761 cgcgtattgc cggaatctgc caaagcggtg attgatgaat cgagctggca atggccggcg
     2821 atatttagct ggttacagga aaaaggcaat atcagccgtt atgaaatgta ccgtactttc
     2881 aactgcggtg tcggaatggt gatagcctta cctgagagag atgtcgaaaa agcccttact
     2941 cttcttaaag agagtggtga aaatgcgtgg cttatcggta aaattgaaga cttaggcacc
     3001 ggtagcgagc aagttgaaat ccgctaattt gcaaaataaa tgctaaaatt gaccgcttgt
     3061 agtaactgat ctgcaaacgg ttaaattttt attgaggaat gcaaatgcaa ctattttggc
     3121 ctatctactt tgtcttaatg aacctagctg ccttatattt aatgtatagt gacaaacaaa
     3181 aagcgatcaa aaaagaatgg cgagtgccag aaattactct cctctctttt tgcctcttag
     3241 gtggggctat cggtgtttac ctaggtatga aatactttcg ccataaaacc caacattggt
     3301 atttccacgt cgctgttgtg ctttctactt ttgcttggct gattggcttg ccttactttt
     3361 att
//
LOCUS       DANMGB010000213         3324 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.214, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000213 DANMGB010000000
VERSION     DANMGB010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3324
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.214"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            58..846
                     /locus_tag="PXG19_002391"
     CDS             58..846
                     /locus_tag="PXG19_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067643.1"
                     /translation="MFLSHFKQVLNANIEADGKDWTIIDVFGGSGLLAHTAKREKPLA
                     RVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRISNEIKAKIINKINDFEG
                     FKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEATGYLDDIEVVSESFHQL
                     LPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLIDLTKPPYIFFSSTKSEF
                     IRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMVYKF"
     gene            complement(883..3321)
                     /locus_tag="PXG19_002392"
     CDS             complement(883..3321)
                     /locus_tag="PXG19_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL6067644.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
BASE COUNT          982 a          621 c          658 g         1063 t
ORIGIN      
        1 tgtgagatag agaaagtatt taaacaagct cctttaccct tttcagggca aaaacggatg
       61 tttttatccc atttcaaaca ggtgttaaat gcaaatattg aagcagacgg gaaagattgg
      121 actattatag atgtttttgg tgggagtggg ttgcttgcac ataccgcaaa gcgtgagaaa
      181 ccgttagcaa gagtgattta taatgatttt gataattacg ccgaacggct aaaccatatc
      241 aaagagacaa atcaacttcg ccaagaaatc taccaaattg ttgatgaaat tataccaaaa
      301 aataagagaa ttagcaatga aattaaagct aaaatcatca ataaaatcaa tgattttgag
      361 gggtttaaag acctcaaatg cttaagttct tggttattgt ttagcggtga gcaagttgca
      421 actttagatg agttatttaa gcacgatttt tggcactgtg tgcggcaaag tgactatcct
      481 gaagcaacgg gttatcttga tgatattgag gtggttagtg agtcctttca tcaattattg
      541 ccgagatttc acgacaaaga gaaagtatta ttgattcttg acccacctta tctttgcaca
      601 agacaggaaa gctataagca ggaaaattac tttgatttaa ttgatttctt acggttgata
      661 gaccttacta aaccacctta tatcttcttt agctcaacca aaagcgagtt tattcgcttt
      721 attcactata tggttcaaaa cagaaaagaa aactggcaag cgtttgaggg agcggaaaga
      781 atagtggtta atgcctcggc aagttataac ggcaaatatg aggataatat ggtgtataag
      841 ttctaaaaat ttaaacgccc tttgatagtg atttaaaggg cgttaaaaaa ccattaaaat
      901 taagaaagta aagctcctgt tttctttcgt agttttcgtg gttgcgtttc gcagttttgt
      961 tggctcgcta caattactgt tcattgtaat gtttaatcga ccattggttt tgctaggatc
     1021 agtttcacca aaataaccgt taaaaccttg gacggtgcct tctgctgctt tgattttttc
     1081 agcaagtatt tgttgctttg cagcactttc atctgttacc ttgagtactt caaagtattc
     1141 gttttcacga atgagaccag tagcaaagtc taaatcgatg aaaactttac gcgcattaaa
     1201 aatagctgtg atctctgcaa cgcttaaagg ttttttcaaa cggataaaat tagttggcaa
     1261 gtgtggaaaa cgttgatatg tgaaaatatc tttgtccaaa tgacgagaaa cctgatctgg
     1321 actagtaatt gcttgaactt tcacttggtc aattgttgga ctaactatgc cggttagtgt
     1381 aatgtttgct gtttgggctg tattatgatt gacaaccatc gctccttcat cgctattctg
     1441 aatacggcgg aacgtgagat cattgccgtt gacatctaag cgcccaccac gataaccaaa
     1501 atagatattg ttaggatcca tttgatctga tgaattgagg attacggtag gtctgccact
     1561 cacaatacct agctctgaaa atgcagattt tttgttattt tcatccgctt gttgatttaa
     1621 tataacagtg ccgtcaccaa cgctaacgga gcctttgttt tctcctttgc cgttgatagt
     1681 tagtgtccct tgtccgattt ttgataatct gtcaccagca gggttactga ttttccagat
     1741 cacattttta tctttatcaa tatcaacacc ggctcctaac caagtaatgc ctgctttcat
     1801 accttccaca gtggtattac catgaaaatg gattgctcct gcaccttggt tgatattctc
     1861 tgtgagactt agcgtattgt tttcacccaa aatatggaat gttttaccgt gttggagttg
     1921 aggattccaa gggttatcgc ctgtattacc attatgacct tgaagtgttg gtaatgaagt
     1981 atctgctaaa ttaactgtaa gaggagcatt ccctcctacg attgagctgg tattgccaga
     2041 aggtgtccaa gtgagtctag caccatttgc attaatagcg cctgcattat tttctttttc
     2101 taaagcacgt acataatgtg ggtggtgata gttccagtaa gatttataaa catctccccc
     2161 aagcgtatta ttctctgaga aatagtcact atatacacct aacacaaccc attttttggt
     2221 acgaacatca taaccaaaaa gagcggagcc actatcgcca ggtaaaccga gagttgttaa
     2281 gggaccgtag ccgtggtctt taaatacatc gtttatggta ttattttcag tttttgctac
     2341 taaaatacgg ctgttaaaat cgctgcctgg aacgcttgga tcgccattag taacaggcag
     2401 aacgctacct cctgtcaaaa aaggaccgtt accgacttca atacgcccgt tgtttaagcg
     2461 atctctttcg ttgttaacca ctgcttgtct accagaaccg gcacgaataa acatggggaa
     2521 aataaaaggg tcgctaaata cactataaaa atcttgtaca ttttcggtag tgcgttcaat
     2581 ctcattagct ggagcgactt cagttactaa tttcgataac ctaggtgcgt ggtagtccca
     2641 gcggggcgtt gggttacctg aaccatctaa aatcagtttt tctccttcgt cattacgttc
     2701 acgtttttct atgcctttcc cgagatctgt tctttcttta tttggatcag gcatatagtt
     2761 attacggcgc accacactat aattgtaatg atggtcgtcg gctttttcgc tagatgaatc
     2821 accaaattga atgtcccgat agccttggtt gtggtttaca ctaataacgt attgtggatt
     2881 aactaatgtt gcaatccctg tttgacgagt aatggaagag aagtcaatca ttggaataga
     2941 catagtctca cctgttactg tttcaaaaac aggtagatca ttagagtctt catcacctcc
     3001 accatagaga aattcataac aaccgggtaa actttcatta tcaaagcatt cagataggct
     3061 tacattcggc ttaggtgaaa tatttgattc cacttcaacc tgcttagttg gtgtaacctg
     3121 taaaaaagta ccgatgtttt tgcccgtttt atcaataact ggaatattgg ttgccccaac
     3181 aaaaaatttg cctttatttt ctgctaaatc acgaaaatat tgataatcga catcaccacg
     3241 tacaatagat gccagtaatg ttggtgaaag agaaatagca attgatgttg ctagaagaga
     3301 gagcttgaaa gtatgcttca ttat
//
LOCUS       DANMGB010000214         3316 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.215, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000214 DANMGB010000000
VERSION     DANMGB010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.215"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            33..1034
                     /gene="pdxA"
                     /locus_tag="PXG19_002393"
     CDS             33..1034
                     /gene="pdxA"
                     /locus_tag="PXG19_002393"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL6067645.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            1045..2043
                     /locus_tag="PXG19_002394"
     CDS             1045..2043
                     /locus_tag="PXG19_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL6067646.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            2040..3266
                     /locus_tag="PXG19_002395"
     CDS             2040..3266
                     /locus_tag="PXG19_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6067647.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
BASE COUNT         1053 a          591 c          637 g         1035 t
ORIGIN      
        1 tcaaaatgat taatttcaat caaggagtaa atatgaaacc tatattggga attacgatgg
       61 gagatgccgc cggtatcgga ccagaagtta ttattaaagc attagctaat caacggattt
      121 atgagttagc acaccctgtt gtgatcggtg atcgaaaaat tatacaacga gccttaccta
      181 ttgttcattc agaattgaaa ttaagaattc tcaataatct agataacttt gtagccgaat
      241 atggcgttat tgatatttta gatttgaata acctgcctga agatttgcct tttgctcaag
      301 ttgatccgcg tgctggaaaa gcagcttatg aatatattga agaggcagtt aatttagcaa
      361 tgggaggaaa aatccacgct attgttacag caccactgaa taaagaagcc ctacacgcag
      421 gtggtaaacc atttcctggc catacagaga tccttgcaac cctcagtaat actaaagatt
      481 actcaatgat gctaaccagt gaaaaactca atgttattca cgttactact cacgtccaac
      541 ttcgtaaagc ctgtgattta attaccaaag aacgagttgc tacagttatt gatttagcag
      601 aagaaaatgc tcgcattctt gggtttaaag aacctcgtat tgcagtcgct ggtttaaatc
      661 ctcattcagg tgaaaatgga atgtttggcg atgaagatca aaaagaaatt gttcccgcaa
      721 ttcaagaggc tcaagccaaa gggtttaatg ttacagggcc tgtccctccg gatactttat
      781 ttcaccgtgc agctaaccta aatgaattcg atattgttgt tgtgatgtat cacgatcaag
      841 ggcatatccc tatcaaatta ttaggctttg atacaggtgt aaacgttact gtcggtcttc
      901 catttattcg aacatctgtc gatcacggaa ctgctttccc aatagcaggc aaaggaacag
      961 cagatagtcg tagtatgact gaagcactct atttgggtgc aaaaatggca aatatcaaat
     1021 atgcgacaca ctaaggagat taatatgtct actcaaacat ctaaatccat cgtcccgata
     1081 tatgatggta tgaataaaat tcctggcggt gcaatggtaa taccgctaat tcttggttct
     1141 attattggta cattctttcc tgaattttta aatttaggtt catttacgac ggctttattc
     1201 aaatcatcag caggaccact tattgcacta ttaattttcg ctacaggtat gcaaattacc
     1261 gtgagaagtt ctggacctgt acttgcccat accggtgttg tattactatt taaaactatt
     1321 attcccgctc ttttagttgt gattttagga ttatgggtag gtaatgatgg tgttatgggc
     1381 gtttctttat tagctatgct aactgttgtt gcaaattcaa atggtggtat ttggttagcg
     1441 tttacaggga aatatggtga ttatagagat aaaggagctt atgtcgcttc ggctgttaat
     1501 gatggacctt tctttgtttt actattttta ggtgtatcag gattagcaga tattcctctt
     1561 tcattaatgc ttgcagctgt tattcctctt attattggta tggttattgg taacttagat
     1621 cctaaatgga cagagttaat gaaaccaaca ggtgcaatag tcattccttt ctttgctttt
     1681 gcattaggaa caggaatcaa tctgcaatct attattactg gaggagcaac aggaattatt
     1741 ttaggtatcg tagcttctct ctttacaggt tttcttgtat ttatcggtta caaaacaatt
     1801 ttaagacgtg gtaatcaatc aggaatcggg tttgcagcag gaactactgc tggaaatgcc
     1861 attattacac ctgaaattgt tgctcaagca gaccctacat tagcaccttt tgttcaaact
     1921 gcgactgcac agattgccgc agctgtatta gtttcagcaa tcttagctcc attatttgca
     1981 gcgtgggttt taaaacgtca aggtggctta gaacaagaca ctataaaagg agaaaatcta
     2041 tgaaagagac actcttagtt attgctgatg accttactgg tgcaaatgat accgcggtta
     2101 tgtttgctga atcaggattt gacactgtct taaaaactaa agtttcggca ttagcccaaa
     2161 ttcatcctga taaagcccaa gtaatttctg tttctacaga ttcaagagca attggagaga
     2221 aagcaaaaga gctgactcaa attgcaatta gcaatgctat tcaaaatagt atcgggcaaa
     2281 tttaccttaa aattgattcc acaatgagag gctctgttaa atatcagatt gaaggtgcta
     2341 ttaaagcttg ggctggttta tatcccgatg ttaaagcaat tatttgtcct gcatatccag
     2401 aaatgggaag aactatagaa gctggtcatt tatatgttaa tggtgttcct gtaaatgaaa
     2461 ctgcttcagg aaaagatcct atctgccctg tgcattcatc ttctatgcaa aaactattgc
     2521 ctgatgctca agtaatcccg tgtgatacgg tcgataattt gcaggcatct attgaaaata
     2581 gtgaatataa acagatcgtt attgatgcta aaacgcacga agatctctca atgattgccc
     2641 aagtcataaa tcacataggt aataaaatta ttcctgttgg ctcagccgga ttggcacaga
     2701 agttgaaaaa tatccaaaat caacaacaac cagagcgaaa tcttaaatta ggtagagcat
     2761 taattgtcgt aacctcaatt cacgaaacaa gccaactgca agttgatgaa tatatttcaa
     2821 ctttaggagg aaaatctatt gtatttaatc cttcgccttc acagttgatt aactactcgc
     2881 aatcagaaca ttcactgaaa ctacaattaa acgctctaat acgttttagt agagatcatg
     2941 ttattattcg ggcaaaccct gcaaaagttg taaatgcaaa atctgccaat atcacggaaa
     3001 cttctaaaga aatttctcaa catttagctg atttaagtaa attctgcctt gataatgaaa
     3061 aatttgatag ccttatatta tttggtggag atggtgcagc agcattatta gatcaaatga
     3121 atgtaacaga gatgaatgta caatatgcgg tagtaccggg cgttccttta tgctccattg
     3181 aaaagggcaa ctactcaggc atcactgtaa tgactaaatc tggaggattt ggaaacaaca
     3241 cactcttaag caatataatg aactagtaac aacaaagaac ctaaagcaac aatgttttag
     3301 gttctttaat tttaac
//
LOCUS       DANMGB010000215         3300 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.216, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000215 DANMGB010000000
VERSION     DANMGB010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.216"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..386
                     /locus_tag="PXG19_002396"
     CDS             <1..386
                     /locus_tag="PXG19_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6067648.1"
                     /translation="YFTDDNVLNYRNSIYGLVATLNYCNTEAVTRRLYYKLSSLNKIM
                     DFSITQEDWYRSVTETQRNCVLIKNSAIEDYSINLTANKIQAKNSPIFIADPFNVLYI
                     DDKKLLKGRDSLLKLVYKTSPYLGV"
     gene            388..1455
                     /locus_tag="PXG19_002397"
     CDS             388..1455
                     /locus_tag="PXG19_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067649.1"
                     /translation="MKFILFDSILERHLGESLKRALESLGHQAVFTDLILHGHSMIYK
                     QADIDFMWKKVKDICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTC
                     YSQVVNHYDVLLHCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAF
                     LGNMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKA
                     KVGVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYP
                     EIFVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDK
                     LQSQTTQERAILFTKYKAQYN"
     gene            1467..2273
                     /locus_tag="PXG19_002398"
     CDS             1467..2273
                     /locus_tag="PXG19_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067650.1"
                     /translation="MNIKDLLKEISFKAVINDLNFSSCLYIKPNTSKLYVILNGALIK
                     EPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLAWYVGDKDTDLYPYLAEFVTS
                     VATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTVCINPQTNIMKYVPSHRNAFL
                     NACFDFNAEEYDSLSNQEKFNALVLLKENTSKILYIQNTQDEFHHKWHFLPFLELKGI
                     DLSEIEKTHWREQQSKDVKVILYSHESGHAAEPKEMIPEILSAVDQLIAS"
     gene            2275..3270
                     /locus_tag="PXG19_002399"
     CDS             2275..3270
                     /locus_tag="PXG19_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6067651.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVVYR"
BASE COUNT         1110 a          503 c          599 g         1088 t
ORIGIN      
        1 cttatttcac cgatgataat gtcctaaatt atcgtaattc tatttatgga ttggtagcaa
       61 cacttaatta ttgtaataca gaagcagtaa ccagaagatt gtactataaa ttatcatcat
      121 tgaataaaat aatggacttt tcaattactc aggaagactg gtacagaagt gttacagaaa
      181 ctcaacgtaa ttgtgtttta attaaaaata gtgctattga agattattca atcaatctta
      241 cggccaataa aattcaggct aaaaattcac ctatctttat agctgatcca tttaatgtgc
      301 tatatataga tgataaaaag ttattgaaag gtagagattc cttacttaaa ttggtttata
      361 agacttctcc atatttaggg gtttaatatg aagtttattt tatttgattc tattttagaa
      421 cgtcatttgg gcgaaagttt aaaaagagct ttggagtcgt tagggcatca agcagtattt
      481 acagatttaa ttttgcacgg ccattctatg atttataaac aagcggacat agatttcatg
      541 tggaaaaaag taaaagatat ttgtgatgaa aaagcagata tgtttatctc atttcggccg
      601 atgaatctaa cgacagaaat gcttgagtat ataggcaagc gaatgaagac cgctatttgg
      661 ctttcagatg accctgtttt atataaaact tgctattctc aagtagtaaa tcattatgat
      721 gtattattac attgcggata taaagaagtt atggattttt atgaagctaa taaccatcca
      781 aaaggcttta attttccgtt ttggacagat catgtagcat ttccaagtgt atataacccg
      841 cttcattctg attatgagat tgcattttta ggtaatatga atgggcaagt tagacgcaaa
      901 agatacatgg aattggcttc attaccattt accaaaaaag tattcggttt aatagattca
      961 gatccattag caatgcatgg tggatttatc aatgaagcat atttacatac aaaacgtgta
     1021 acagaggttt tatctaaggc aaaagttggg gtgagtatcc cacaattctt taccgaatat
     1081 aatggtttag attatgatta tcctgaattg gcgggtttag gatatttcca atttcctagt
     1141 cgagttatcc aatatgctgc aagtgggtta cctattgcag cggttggtga tgagagaatg
     1201 aaggaagttt atcctgaaat ctttgttggc aatagtatta cagagctgga gccgtacatt
     1261 aaacaaattt gtgaagatta tgattttgca ctatcagaat cggctaaaat tctaactaga
     1321 tttagaaaga actattctgc cttatcccgt gccatgatgt tgattgattt ggtagaaaat
     1381 ttagacaaac tacagagcca gacaacacaa gagcgcgcaa ttttatttac taaatataaa
     1441 gctcaataca actaggagta aactttatga atattaaaga cttacttaaa gagatcagct
     1501 ttaaagctgt aattaatgat cttaattttt catcgtgtct atatatcaaa cctaatacat
     1561 caaaattata tgtgatatta aatggtgcat taatcaaaga acccagaaat cccttaattt
     1621 atcatagaca tagttggcat ctagaatttg atggctcagt tctatatatc gcagatccaa
     1681 cattatttaa atatgaatca attaatttgg cttggtatgt tggagataaa gatactgatt
     1741 tatatccata cttagctgaa tttgtaactt ctgttgctac acatttgaat gttgagacag
     1801 accatattgt tacttatggt tcaagtggtg gtggatttgc tgcattacag ttgggagcaa
     1861 gaattggaaa cggtgtagtt accgtttgta ttaatccaca aaccaacatc atgaaatatg
     1921 taccaagtca tcgtaatgcc tttttaaacg cttgctttga ctttaatgcg gaagagtacg
     1981 atagtctttc taatcaagag aaatttaatg ctttagtatt acttaaggaa aatacatcaa
     2041 agattttgta tattcaaaat actcaggatg aatttcatca taaatggcat ttcctcccat
     2101 tcctagagtt aaaggggata gatctatcgg aaatagaaaa gacccattgg agagaacaac
     2161 agagcaaaga tgtaaaagtt attttgtatt ctcatgaatc aggtcatgca gctgaaccta
     2221 aggaaatgat tcccgagata ttatccgctg ttgatcaact gatagctagc taaaatgctg
     2281 ttttatttgg tatctgattc tttaactagg ctttcattat caaatgaaag cctagttgat
     2341 cttggaagaa taacatctat aggaaattat cctttcttgc ataatgcaaa gaatgctaaa
     2401 tttcttatgg tcgaatccgc ctggcaaggc tacaaaaacc gttggaaata taaaattgcc
     2461 tcttatcctg ataatcctga acgaaccaat gaaaagttgg ttcgtttagt agaaaaagcg
     2521 aaggataaag gcattccaac ggtcttttgg aacaaagaag attctgtgca ttttgatcga
     2581 tttattgatt cggcgaagca ttttgatcat atttttaccg tagatcaaaa tgccattgct
     2641 cgttataggg aagtagtgcc tgcgacaaca accgtcaatg tcggaatgtt ccctgttcag
     2701 cccaaaatcc ataactttca aggatttaat tttaaacacc ttgccgcaaa ttttgtaggg
     2761 agttacagtc atcatatcca caataagcgt agagaaagac aggatatgtt gtttggtgca
     2821 gcacttaaag caggtcttcc ggtaaccatc tttgatagaa actctgatag aaaatcggaa
     2881 aattatcgtt acccaaaaaa tagctttaat ttaaatgttc aacctaatgt tagttatact
     2941 gaaactgcta atatttatcg tgattatctt gtttctttga atattaatac tgtcgaagat
     3001 tcccctacga tgttttctcg cagagtcgtt gaaatattag cttgtggagg aatattagtc
     3061 tctacaccaa gtatggctat cgacaatata tttaaagaat attgtcatat cgtacaaagt
     3121 gaagatgagg ctatagaatt attccaacgt ttaaaacgag gtgcttctcg tgatgatttg
     3181 aataaagcga ttgcaggctc tgaatttgta ttgagtaact ttacttggga acatttctta
     3241 tcccaaatac agaaagttgt atataggtaa cttaaatagc attattaaaa actctctgcc
//
LOCUS       DANMGB010000216         3275 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.217, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000216 DANMGB010000000
VERSION     DANMGB010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.217"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..572)
                     /gene="pdxT"
                     /locus_tag="PXG19_002400"
     CDS             complement(<1..572)
                     /gene="pdxT"
                     /locus_tag="PXG19_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL6067652.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            complement(572..1444)
                     /gene="pdxS"
                     /locus_tag="PXG19_002401"
     CDS             complement(572..1444)
                     /gene="pdxS"
                     /locus_tag="PXG19_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL6067653.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            1655..3058
                     /locus_tag="PXG19_002402"
     CDS             1655..3058
                     /locus_tag="PXG19_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL6067654.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
BASE COUNT         1015 a          652 c          599 g         1009 t
ORIGIN      
        1 tacttatttt ttcggcacat ttccacaaaa tagcggtgaa aacttaaatc attattcact
       61 tcgggatgga aggatatacc tatctgattt tggtatttta ctccaacaat cttaccgctt
      121 atcttggcta aaatttctac atcttttcca gtgctttcta tataaggcgc acgaatgaat
      181 gtgagaggaa ttttaccgag atatttaact tcttcttcta ctaaaaacga gcctaattgc
      241 cttccgtaag cattacgttt cactgttaca ggcaaagtag ccaaatgttt tttatcgtcg
      301 tttaccaaat tttccgcaag caaaattaaa cccgcacaag ttccaagcgt tggcaagcca
      361 tttaaaattt tttgacgaag cggctcaagc aagcctaatt cacgtaataa tttaccttga
      421 acagtcgatt cgccaccagg taaaatcaga ccatcaaaat cttggtttaa atcagcaagt
      481 tgacgaattt ccatactttc aacccctagt tgctggagtt tatcagtatg ctcgctaaat
      541 gcaccttgca gagcaagaat agcaattttc attagacacc tcttgctgcc attagcaatt
      601 caatctcttg ctcattaatt cctaccattg cttcacctaa atcttcagaa agctccgcaa
      661 gtaatttagg atcgttgtag ttggtaacag cttgtacaat ggcccgcgct cgtttagcag
      721 gatcgcctga cttgaaaata cctgagccaa cgaagactcc ttctgcacct aactgcatca
      781 tcaatgcagc atcggcaggg gttgcaacac ctccagcagc aaaggtgaca acaggcaatt
      841 tttggtactg atgtacatat tgtactaaat caaatggtac ttggagctct ttagctacgt
      901 gataaagttc atctgtggta tgtgaaacca agcgggcaat ttcttgtttc attttgcgaa
      961 gatgatgtac tgcttgcacc acattgcctg ttcctggctc gcccttacta cggatcatag
     1021 cagcgccttc attaatacga cgtagggctt cgcctaaatt ttttgctcca catacaaatg
     1081 gcacttcaaa tttacgcttg ttaatgtgga aggtatcatc tgcaggagaa agcacctcac
     1141 tttcgtcaat atagtcaatt tcgatcgctt gcaggatttg tgcttctgta acgtgtccaa
     1201 tacgtacttt cgccattaca ggaatggata ccgctgcttg gatactcttt atcatcttgg
     1261 gatcactcat acgagaaacg ccaccagctg cacgaatatc tgcaggaatt ctctctagtg
     1321 ccattactgc acaagctcca gcttcttccg caatgcaggc ttgctcaggg gtagttacat
     1381 ccataattac accgcctttt aacatttgag caagttgtct gtttaaatca tagcgattag
     1441 tcattgtact ttttccttct aattgttgaa taattgaact tttcgtagtt tcgattagct
     1501 cggcattaag tttattttta tattcgctgg atgcgagtgt tcatctacca atttaaatac
     1561 actcagccaa tttgagtgag gaaacagcat gtattgtaat ttaatctgaa ctgtttaaaa
     1621 tgaccatttt atgtttttct tatcatgtca gattatgctt acctacactt ttaacacaca
     1681 agaaggcacc gctctctatg agcaacttta ccgttttcta aaaaacgaca ttgaaagcaa
     1741 catacttata gcaggggata aactgccgtc taaacgggct tttgcaaagc atttaggcat
     1801 ttcagtaatg acagtggaaa cagcttacca acagttagta gcagaaggtt atgtgaatac
     1861 tcagcctaaa aaaggctttt ttgtgaatgc tttaaattta ccagaaaaaa aggaagccat
     1921 atcagttcag ctacaaaaaa tcagttcaga acagtatgag aaaaataaaa aatggcaggc
     1981 agatttaact aatcgacaga ctttagcaga aaattttccg ttttcggttt ggacaaaatt
     2041 agtacgcgaa gtgctgaaaa cacaccaaag tgagctaatg gagcgtgctg agagtggggg
     2101 cgtatggaca ttaaaatttg cgatagccaa tcatcttcga gcctttagag gaatgatcgt
     2161 taatccaaca cagattatta ttggagcggg tacggagtat ctttacggtt tgctcattca
     2221 gcttctaggc ttagataaac attatgcact aactgagccc agttacgata aattgcgcag
     2281 aatttatcac agttatcgct tatcaacagc cacagtatcg atgccatttt caatcgatga
     2341 gttaaattca aagaatgtgg acgtgataca tacctcgcca tcacaccatt ttccgacagg
     2401 acacgtaatg ccgattgcca aacgttatga gttgttagct tgggttgcac aaaaagctga
     2461 aagatatatt gtagaagacg actacgacag cgaatttcgt tttgtaggac aaccaattcc
     2521 tgcattgaaa tctattgata tgctcgggcg agttatctat atgaatactt tttctaaaac
     2581 gctctcttca actgtacgaa ttgcctatat ggttttgcca ccagaattac tgaatcgttt
     2641 tcagcaggaa ttagggtttt atgcttctac cgtttccaat tttgagcaat atattttggc
     2701 agaatttatt caacaaggct attttgaaaa gcatatcaat cgaatgcgag cgtattatca
     2761 aaaaaagagg gataaattac taaaagcttt caagcaaggc aatttagcag aaaagattgc
     2821 aataaaagaa gaacattcag gcttgcattt cattgtacag ctaaacacaa cattaacaga
     2881 aaggcaaatt ttgcaggcag cagaagaaca aggtataaaa tttgtcgcat tgtctgctta
     2941 ttatcaagat aaatctcaaa ttcagcaaaa tgcttttata attgggtact ctaatttaaa
     3001 agatgatcag attaattatg tagcagagag cctgaaaaaa attttagaca acgaatagca
     3061 agtatcaaaa ctgctttaat ttttagcaaa ttgccttaaa aacacgcaag tggtaattat
     3121 tttagtgatt tttgcaaaaa attaccaaat tctccttgca aggcattttg ttttgcgtat
     3181 aatgcatggc acacaacgac gcactgttgt gaacgattta aaattgattt ccagtgcgtc
     3241 gtttcttttt gttctttaac aatttatcag acaat
//
LOCUS       DANMGB010000217         3265 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.218, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000217 DANMGB010000000
VERSION     DANMGB010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.218"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..300
                     /gene="metQ"
                     /locus_tag="PXG19_002403"
     CDS             <1..300
                     /gene="metQ"
                     /locus_tag="PXG19_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter membrane-anchored
                     lipoprotein MetQ"
                     /protein_id="HDL6067655.1"
                     /translation="IENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLNTQDH
                     GVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKGW"
     gene            383..1213
                     /locus_tag="PXG19_002404"
     CDS             383..1213
                     /locus_tag="PXG19_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL6067656.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            1265..2056
                     /gene="metQ"
                     /locus_tag="PXG19_002405"
     CDS             1265..2056
                     /gene="metQ"
                     /locus_tag="PXG19_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL6067657.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(2101..3252)
                     /gene="metK"
                     /locus_tag="PXG19_002406"
     CDS             complement(2101..3252)
                     /gene="metK"
                     /locus_tag="PXG19_002406"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL6067658.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
BASE COUNT         1021 a          627 c          698 g          919 t
ORIGIN      
        1 atcgaaaatc cgaaaaactt aaaaattaaa gaagtggata cttcaattgc cgcaaaagcg
       61 ttagatgacg tagatttagc ggtggtaaat aacacttatg ccgggcaggt aggcttaaat
      121 acccaagatc acggtgtatt tgttgagtct aaagattcac cgtatgtgaa tattattgtg
      181 gctcgccaag acaataaaga tgcagctaat gtacaaaact ttattaaatc ttaccaaacc
      241 gaagaagtgt accaagaagc acaaaaacac tttaaagatg gtgtagtaaa aggttggtaa
      301 tttagctgat ttttacttaa atggcgatta agcgctaggt taatcgccat tttcatcttt
      361 aaaatatagg aaggagcaaa caatgaactt taaaaaatta ttaggtgtgg cgttagtatc
      421 tgccttagca cttactgcgt gtaaagatga aaaagcacaa gcacctgcta caacagctaa
      481 aactgaaaac aaagccccat taaaagtggg tgtgatgacc ggccctgaag cccaaatgac
      541 cgaagtggca gtgaaaattg caaaagagaa atatggctta gatgtagagt tagtgcagtt
      601 tactgaatac actcaaccaa atgccgcact tcattctaaa gatttagatg ctaacgcgtt
      661 ccaaacggtg ccttatttag agcaagaagt gaaagatcgt ggttataaat tagcgattat
      721 cggcaatacg ctagtatggc caatcgcggc ttattctaaa aaaattaaaa acatttccga
      781 gttaaaagac ggagcgactg ttgcgattcc aaacaatgca agtaatactg ctcgtgcgtt
      841 attattgctt caagctcacg gtttattgaa attaaaagat ccgaaaaatg tgtttgctac
      901 cgaaaacgat attatcgaaa acccgaaaaa tatcaaaatc gtacaggcgg atacctcact
      961 tttaacccgt atgttagatg atgtagaact tgcggtaatc aacaacactt acgcaggtca
     1021 agctgggtta agtccggata aagacggtat tattgtggaa tctaaagatt caccgtatgt
     1081 gaatttagtg gtaagtcgtg aagataataa agatgaccca cgcttacaaa cttttgtgaa
     1141 gtcattccaa accgaagaag tattccaaga agcgttaaaa ttatttaacg gtggtgtggt
     1201 gaaaggttgg taatcagttg gacggcatat tctgccgtcc ttttcttaaa aggagaaaca
     1261 gataatgaaa ataatgaaat tagccggtgc agttgcaatt ttctcgcttt ttttaaccgc
     1321 ttgtaatgat aaagccgaaa agttgaaagt cggtgtgatt tccggccctg aacataaggt
     1381 aatggaagtg gcggcaaaaa ttgcaaagga aaaatataac cgtgatgttg aattagtggt
     1441 atttaccgat tatgccacgc ctaatgcagc tttagataaa ggcgatcttg atttgaatgc
     1501 tttccagcat aaaccttatt tagataacca aattcaggaa aaaggctata aattagtgcc
     1561 ggtcggcaat acttttgttt atccgattgc ggcttattcc aaaaaaatta aatcgctggc
     1621 agagttgaaa gatggtgata ctattgcagt gcctaatgat ccgactaatt tagcccgtgc
     1681 tttaatttta ttggaaaaac aagatttaat taagctgcga gcagatgcag gcttaaaagc
     1741 aaccagtgtg gatattattg aaaaccctcg taaattggtg atccaagaaa ttgaagcacc
     1801 attattgcct cgaacgttgg acgatgttgc cttttcgatt attaatacta cctacgcagg
     1861 gcaaaacggt ttaacgccaa ccaaagacgg aatattcgtt gaagacaagg attcgcctta
     1921 tgtgaattta attgttgccc gtgaaaataa ccaacattct gaagccgtaa aagatttggt
     1981 gaaagcctac caaacagaag aggtgtataa caaagcgaat gaagagttta aaggggcgat
     2041 gataaaaggc tggtaattga agataaataa ggcatagatt cctatgcctt actttttatg
     2101 ttacagacct gctccggctc ttaatgcttc ggctttgtca gttttttccc aaggaaaatg
     2161 tttacgaccg aagtgtccgt aggcagcggt ttcacggtag attggtttga ttaaatctaa
     2221 cattttgatt aagccatacg ggcgtaagtc aaagttttgg tagattaatt tcacaagtat
     2281 ttcgttgctc actttacctg tgccgaaggt ttcgaccata attgatgttg ggtcagccac
     2341 cccgatagca taagaaagtt ggatctcaca gcgatcggct aagcctgcgg caacgatatt
     2401 ttttgcgaca taacgagcag cataagcagc agagcgatcc acttttgacg ggtctttacc
     2461 agagaatgca ccaccaccgt ggcgagccgc accaccgtag gtatctacaa tgattttacg
     2521 cccggttaaa ccacagtcac ccattggacc gccaatcaca aaacgaccgg ttgggttgat
     2581 gaaatatttg gtgttttggc tgagccattc gcttggtagt accggtttga tgatctcttc
     2641 catcacccct tcaattaact ctttttgcga aatatgctct gcgtgttgtg tagaaagcac
     2701 tacggcatca atgccgataa ttttattgtt ctcataagca aatgttaatt ggcttttagc
     2761 gtcagggcgt aaccaatcga gtttgcccga tttacgcact tttgactgct gttccattaa
     2821 gcggtgtgcg taagtaattg gagccggcat taacacctcg gtttcattgg tagcgtagcc
     2881 aaacataatc ccttggtcgc ccgcaccttg ctctaacgga tcggcacggt caacgccctg
     2941 gttgatgtcc ggagattgtt taccaatcgc atttaatacc gcacaagagt gagcatcaaa
     3001 gcccatatca gagtgagtat agccgatgtc gcaaatcact tggcgggtta agttttcaat
     3061 atccacccac gcagaggtag tgatttctcc ccctactaat gccataccgg ttttcacata
     3121 agtttcacaa gcaacgcgtg ctttagggtc ttgttttaaa atttcatcta ataccgcgtc
     3181 tgaaatttgg tctgcgattt tatccggatg cccttctgaa accgattcag aagtaaataa
     3241 attaattgcc atttgtattc ctctc
//
LOCUS       DANMGB010000218         3259 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.219, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000218 DANMGB010000000
VERSION     DANMGB010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.219"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..2003
                     /locus_tag="PXG19_002407"
     CDS             <1..2003
                     /locus_tag="PXG19_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL6067659.1"
                     /translation="LVGKTFIAQKRPNQIIGWGLRPSAVGSRAYAQKHQLPYIALEDG
                     FLRSLGLGVKGYPPFSLVYDDIGIYYDTTCPSRLEKLLLEKPLQDQEQIKLAERALSQ
                     ILTYGLSKYNHALDFSEIPSAKEKIVLVIDQTFGDMAVKYGQASEVDFNKMLETAISE
                     NPEAQIWVKTHPDVLSGKKKGYLTDLPQYTDRVRIITEDVNPASLIKLCEKVYCVTSQ
                     MGFEALLLGKKVVTFGVPWFAGWGVTDDRNEAVQLLVQQNRRKDRSLLQLFYAAYFDY
                     SRYINPNTGEKGSIFDVIDYLYKAKRLNQRLSGNLYCIGMSLWKQAVIKPFFNLPQCR
                     LHFVRSLNSLKKRPLADNAKILVWSNGKADVLQFAQQNNIPLLRMEDGFIRSVGLGAN
                     LVAPLSLVVDDLGIYFNAENTSRLEQILLSAEHFSETDLSYAETLRQKLVASHIGKYN
                     VGGGDVKFNAQGKKIILVPGQVEDDASIKSGSPQIKRNLDLLKKVRELNPSAYIIYKP
                     HPDVVSGNRVGQIPTAETRRFADQMVDNANILDCILIADEVHTMTSLAGFEALLRGKK
                     VHCYGLPFYAGWGLTEDRLKSARRGKSLTLSQLIAATLIYYPLYVDPISRQFIDANQA
                     IHILSQQKRNLTNQRIKRSWVSKQYGKLQHLYRAFKYASHTK"
     gene            2026..3258
                     /locus_tag="PXG19_002408"
     CDS             2026..3258
                     /locus_tag="PXG19_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6067660.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
BASE COUNT         1036 a          531 c          678 g         1014 t
ORIGIN      
        1 ctcttgtggg aaaaaccttt attgctcaaa aaagaccgaa ccaaatcatc ggctgggggc
       61 ttcgtccttc agcggtggga tcaagagctt atgcacaaaa acatcaactt ccctatattg
      121 cattagaaga cggcttttta cgctcactag ggctgggtgt aaaaggctat ccgccatttt
      181 ctttagttta tgatgatata ggtatttatt acgataccac ctgtccttct cgtttagaaa
      241 agttattgct tgaaaaacct ttacaggatc aagagcaaat caagcttgca gagagagcat
      301 tatctcaaat cttaacttac ggactttcta aatataatca cgcactagat tttagtgaaa
      361 tcccctctgc caaagaaaaa atcgtgttag ttattgacca aacctttggt gatatggcgg
      421 tgaaatatgg tcaagcgagt gaagtggatt tcaataaaat gttggaaacg gcaatcagtg
      481 agaatccaga ggctcaaatt tgggtaaaaa ctcaccccga tgtattaagt ggcaagaaga
      541 aaggctattt gaccgattta cctcaatata ctgatagggt cagaattatt actgaagatg
      601 tgaatccggc aagtttgatt aaattgtgtg agaaagtcta ttgcgtaact tcgcaaatgg
      661 ggtttgaggc attattatta ggtaaaaaag tggttacctt tggtgtaccg tggtttgccg
      721 gttggggggt aacagatgat cgtaacgaag cggttcaact attagttcaa caaaatagac
      781 ggaaagatcg ttcattactg caactttttt atgctgcgta ttttgattac agccgttata
      841 ttaatccgaa taccggtgag aaaggctcta tttttgatgt catcgattat ctatataaag
      901 ccaaaagatt aaatcagcgc ttaagtggga atctatactg tattggtatg tcgctatgga
      961 aacaggcggt aattaagccg ttttttaatt tgccacaatg tcgattacat tttgttcgtt
     1021 cgctaaattc tttaaaaaaa cgaccgcttg cagataatgc aaaaatttta gtttggagca
     1081 atggcaaagc ggatgtcttg caatttgcac agcagaataa tattccattg ttaagaatgg
     1141 aagatggatt cattcgctct gtcggactag gcgctaattt agttgcaccg ctttctttag
     1201 tagtcgatga tttaggcatt tattttaatg cagagaacac ttcacgatta gaacaaattt
     1261 tattgagtgc agagcatttt tctgaaactg atttgtctta tgctgaaaca ttaaggcaga
     1321 aattggtggc tagccatatt ggaaaatata atgtgggcgg tggcgatgta aaatttaatg
     1381 ctcaaggtaa aaaaataatt cttgtaccgg ggcaggtaga agatgacgct tcgatcaaat
     1441 caggttctcc acaaattaaa agaaatctgg atttactgaa aaaagtgagg gaattaaacc
     1501 ctagtgccta tattatttat aagcctcacc ctgatgtggt aagtggtaat cgagtcggtc
     1561 agattcctac ggcagaaaca cgcaggtttg cggatcagat ggtggataat gccaatattt
     1621 tagattgtat tttaattgca gatgaagtgc atacaatgac atctttagcc ggtttcgaag
     1681 cattattaag aggtaaaaaa gtgcattgct acggattacc tttttatgct ggttggggat
     1741 tgacggaaga tagattgaag tcggcacgca gaggtaaatc tttgacatta tctcagttaa
     1801 ttgccgcaac attgatatat taccctctgt atgttgatcc tataagcagg cagtttattg
     1861 atgccaatca agcgattcat atattgtcac aacagaaacg aaacctaacc aatcaaagga
     1921 ttaaacgttc ttgggtgagt aaacaatatg gaaaattaca gcatctttat cgtgcgttta
     1981 aatatgcttc ccacactaaa taagcgtaga gggtaggaaa ttaagatgga acattattta
     2041 gatgagctaa tcatcaatag ccagagaatt ttattgttac aaggcccgat aggctctttt
     2101 ttcactgagt ttgcccgttg gttagaaagt gagcaaaaag aggtcttcaa gttaaatttt
     2161 aatggcggag atgaatattt ctatccaaat aatagcccga atacttttcc ttactatgat
     2221 agcttagata attttgaagc ctatttaatt cagttttgcc aaactcatca aatagataat
     2281 atcttatgtt ttggcgataa tcgttattat cataaagtgg ctaaaaacgt ttgcttgaag
     2341 ttaaagttgg tcttttgggc gtttgaagaa gggtacttta ggccagaata tattacgttg
     2401 gaaaaatggg gtgtaaatgc tttttctcca atccctaaaa atcacacttt ctttttgcct
     2461 tatgccgagt taccagtagt cagtgaacca gaaaaagtat ctaaaggctt tagatgtatg
     2521 gcgggaaaag caatcccgta ctattggaat gcctataaaa aacgtaaagc atacgcaaaa
     2581 tatcagcatc atcgttttct gaatctcaaa tactacctta atttatggac aaggtcggga
     2641 attaagcgaa tatgttattg gttacatgat aaaggctttg ccaagcgggt agaaaaagga
     2701 gagtttggtg aatttttcat tgtgcctcta caagtttatg atgacactca agtgaggatt
     2761 catagtgaac aaaaaagtgt agagcgtttt ttaagggaag ttctgaattc ctttgccaaa
     2821 tttgcaccgg cacatctcaa tttaattatt aagcatcacc cgatggatag aggatttata
     2881 gattataaaa tggtgattta tgaattctta gagcaatatc cccaattaaa cggtagagtt
     2941 ttttatattc acgatgtgcc gttacctgtc tttttacgtt atgggaaagg aatggtgact
     3001 ttaaattcaa ccagtgggct ttctgcattg ctccataata tgccggtcaa aaccttaggt
     3061 agagccaatt atgattttga gggattaacc gataaacagc cattagatac tttttgggct
     3121 aatcctcagc cacctaattc ggaagtattt aaaggctaca gacaatttca tttacataaa
     3181 acgcatatta acggtaattt ttaccataaa tcgattttgc gttatcctta taattgggaa
     3241 aatgaagcac acaggtgat
//
LOCUS       DANMGB010000219         3182 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.220, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000219 DANMGB010000000
VERSION     DANMGB010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.220"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            22..255
                     /locus_tag="PXG19_002409"
     CDS             22..255
                     /locus_tag="PXG19_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL6067661.1"
                     /translation="MEELKAYLNSLTTKEQESFALRCNTTVGYLRKSISRNSRLGAEI
                     CVAIERETKGLVTRKHLIEDWHLRWPELANDKQ"
     gene            412..654
                     /locus_tag="PXG19_002410"
     CDS             412..654
                     /locus_tag="PXG19_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067662.1"
                     /translation="MYGINLNLNEKSSQTQNARILAHLQNGGRITSLSALDDFGCLRL
                     SARIKDLRDRGHDIQSVFITVPNGKKVKQYFMECAK"
     gene            651..1002
                     /locus_tag="PXG19_002411"
                     /pseudo
     CDS             651..1002
                     /locus_tag="PXG19_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596652.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1140..1424
                     /locus_tag="PXG19_002412"
     CDS             1140..1424
                     /locus_tag="PXG19_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067663.1"
                     /translation="MLLEQFGITGKLAEDFIVHRKAKKAPITETALNGYQREADKAKI
                     PIQKAVEIAIERGWTGFKADWQWQDDQPKHRPKDNMRAEWNNPEAWAEVF"
     gene            1424..2071
                     /locus_tag="PXG19_002413"
     CDS             1424..2071
                     /locus_tag="PXG19_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6067664.1"
                     /translation="MSLQKTEQNRPLAVLGEQQGKLSGEVESLVDRIFDQLLASCPSI
                     QYWSEKQVATAKKQWILGFAENGIRTVEQVRQGMKALRAKTDDFVPSIGKFIQWCNTI
                     DYHELGLPDLEQLLKLLDRSLRFDFIEIQKLKFKSNAEYWLITDLYARNKKYSWKDET
                     LRNQAEKALVAMAKRIMSGEQIPPPKPLIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            2068..2640
                     /locus_tag="PXG19_002414"
     CDS             2068..2640
                     /locus_tag="PXG19_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6067665.1"
                     /translation="MTDFDKDTYQTPKYFRNWLNHRYAWFHIDGCSNGKNALYSYWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILERVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTGEEVKGNNKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            2759..>3182
                     /locus_tag="PXG19_002415"
     CDS             2759..>3182
                     /locus_tag="PXG19_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL6067666.1"
                     /translation="MAKYQMMKLPGGILSPLNDEEAERLKSFQNGEQYEIEIKRQRNP
                     AFHRKVFAFFNFCFDCWSGSHSDWEFQDPTAQFDTFRKHLTVMAGFYVQTWNLKGQVR
                     IEAKSLSYANMEQDEFEQAYKALINAAIKHVFNNTKDEN"
BASE COUNT         1020 a          568 c          751 g          843 t
ORIGIN      
        1 gtttttaaaa gaggactcac aatggaagaa ttaaaagcat acctcaattc tttaaccaca
       61 aaagagcaag agagttttgc cttgcgttgt aatacgacag ttgggtattt aagaaaatcg
      121 atctcaagaa attctcgatt aggtgcggaa atttgcgttg cgatagagcg tgaaacaaaa
      181 ggtttagtta ctagaaagca tttaattgaa gattggcact tacgctggcc ggaattggca
      241 aatgacaagc aataaaggga aagttttttc taaaaaactc aaatcattct accacagtaa
      301 aaattcaatt tttattagag tggcaatttt tatgctgctt gcgtggtggg tttttaacaa
      361 ttaaaaaaac caccgctgta acggtggcta attactaagg aggtttccta tatgtatggg
      421 ataaatctta acctaaacga aaaatcaagt caaacccaaa atgcaagaat tttggcacat
      481 cttcaaaatg gcggtcgtat tacttcgctt tctgcgttag acgatttcgg ctgcttgcgt
      541 ttatccgctc gcattaaaga tttgcgtgac cgtggtcacg atattcaaag cgtatttatt
      601 acagtgccga atggcaagaa agtgaagcag tattttatgg agtgtgcgaa atgagattta
      661 gcacttacat caacaatgca aaatgccttg aatggaactt aaatgctaat caaggagcat
      721 tatttgattt actgaatcaa gctcctgctt gggcgaaaga aatcattatt gatggcgtgg
      781 tttattactg ggtttcccgt aatgcggtga tcgaagaact acctttgttt tactcaaagc
      841 ctgataccgt ctatcgccat tttgtcgagt ttcacaaaaa agggttgatc gtgtatcaaa
      901 aacacggaga taaagacctt attcgattaa ctgaaaaagg gaagacttgg aatgagttta
      961 actcggattt aaatccgaca ctcggaaata aatccgagtt agctcggaaa cagatccgaa
     1021 aaagctcgga tttaaatccg acaaataata atactaatta taaaaatact aatgatcata
     1081 ataataccct tacgggtatt aacgcacaca cacgtgagac taaaaaatct gctgtgttgg
     1141 tgttgcttga acaattcggc attacaggca aattggcgga ggattttatc gtacaccgca
     1201 aagccaaaaa agccccgatt accgaaactg cactgaatgg ctatcagcga gaggcagaca
     1261 aagccaaaat cccgattcaa aaggcggtag aaattgcgat tgaacgtggc tggacaggat
     1321 ttaaagccga ttggcagtgg caagacgatc aacctaaaca tcgcccaaaa gacaatatgc
     1381 gagctgaatg gaataaccct gaagcgtggg cggaggtgtt ttgatgagcc tgcaaaaaac
     1441 agagcaaaat cgaccgcttg cggtgttagg tgagcagcaa ggcaaattat ccggtgaggt
     1501 tgaaagcctt gtggacagaa tatttgacca gttgcttgcg agttgcccaa gtattcaata
     1561 ctggtcggaa aagcaagttg ccacagccaa aaaacaatgg attttaggct ttgcggagaa
     1621 cggaatccgc acggttgagc aagttcgaca gggtatgaaa gcgttaagag caaaaactga
     1681 tgatttcgtc ccgagtatcg gcaaatttat ccagtggtgc aatacgattg actatcacga
     1741 attaggatta cctgatttag agcagttact caagcttttg gatcgctctt taagatttga
     1801 ttttattgag attcagaaac ttaaatttaa atcaaacgct gaatattggt tgataactga
     1861 cctatacgca cgtaacaaga aatatagttg gaaagatgaa accttacgta atcaagcaga
     1921 aaaagcctta gtggcaatgg caaaacgaat tatgagcgga gagcaaattc caccacctaa
     1981 accgctaatc gaagagaaaa agaaagtgcc aatagatcca cgcattcagc gaattttgga
     2041 cgagaagaaa caagcaggag caatgcaatg acagattttg ataaagacac ttaccaaacg
     2101 ccaaagtatt tccgtaattg gctaaatcat cgctatgcgt ggtttcacat tgacggttgt
     2161 tctaacggca aaaacgcatt gtatagctac tggattggca aagcggcaga aggcttggac
     2221 gaagacacgc taagtggtca gattgccgag gatttcttgg cagaaaactt gctcgatgtg
     2281 atcttggaac gtgtggcaga ttggggcgaa ttactccgta tcttcgttaa tccgccatat
     2341 agcaatccac tcccttttgt tcagcgtgct gcggagctga aaaaagccgg tcatattgtg
     2401 gtaatgctgt tgccggcaga caaatctact cgttggtatc aggttatcca agaaaacgct
     2461 agtgaggtga tcgacattat cggtgggcgt attaatttta ttaatccgct cacaggcgag
     2521 gaagtgaaag gcaacaacaa aggctcgatg gtagcggtgt tcgacccgtt tgtggaggga
     2581 atagttaccc gtcaaatgcc gctggataag attaaggagc tgggcggcta tgaaaaataa
     2641 cgaagggtgg gaagtgtgat gagtgattct actattggat ttttagggat tctaattttc
     2701 ttcgggtggt tagcatattt ggtatttaga gcttttggat tttcattgag ggatagagat
     2761 ggctaaatac caaatgatga aattgccggg tgggatttta agcccgttaa acgatgaaga
     2821 agccgagcgg ttgaaatcgt ttcagaatgg cgagcagtac gaaatcgaga ttaaacgcca
     2881 gcgtaatccc gcttttcatc gcaaggtgtt tgcgttcttt aatttctgtt ttgattgctg
     2941 gagtggtagc cattccgatt gggagttcca agatccaacc gctcaatttg atactttccg
     3001 caagcattta actgtaatgg cagggtttta tgtgcagacg tggaatttaa aagggcaagt
     3061 gcggattgag gcgaaaagcc taagctacgc caatatggaa caagacgagt tcgagcaggc
     3121 ttataaagcg ttgattaatg cagctatcaa gcacgttttt aacaatacca aagatgagaa
     3181 ta
//
LOCUS       DANMGB010000220         3081 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.221, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000220 DANMGB010000000
VERSION     DANMGB010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.221"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2128..>3081
                     /locus_tag="PXG19_002416"
     CDS             2128..>3081
                     /locus_tag="PXG19_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067667.1"
                     /translation="MNADKLTDITSRVANAESTITNFQSTKANKSEVASIAQQNLQSI
                     WRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSRVASSQYGDRRLTQVFVTQAGTG
                     HFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRTGLNYVYLIREDGGNFRLPTLPL
                     TASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDWFAFHSVKLEMGNVATGWTPTAK
                     DIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTTRMGAAESNLTRTERAVTELNQT
                     TVTTLRDLTARTKTTEGSLSRLETAKASKTEVASIAQSSLQS"
BASE COUNT          997 a          685 c          689 g          710 t
ORIGIN      
        1 acaccaaccg gcttagaaac ctacggtgtt tggtcgttat cgactaaaca aatcagctct
       61 ggattatatc gctcaatctc gattgtcgaa aatgcggacg gcacaaacac tatcacagcg
      121 ttacaacacg aaccgcagaa agaggcaatt gttgataact ccgctcactt tgtggaaacg
      181 gctagaacac tctacaaagc tccacaaatt aacgcagtgg aagtctcgac cggttatgac
      241 ggtaagctct acattaccgg tgatattagc tccggtgatg gcaagctaac ctatgatatt
      301 aaaattacca aagatggcaa tttatatcaa tacaaaaaag gcttaagcga tccgaacatt
      361 gaactaagtg atttacctaa cggcgattat accgtcatta tttacggcaa aaacgccaaa
      421 gggcaaatcg tcaccgaaaa aacacaaacc tttactattg atcgacctcc agctccgacc
      481 ggtgtagtag taacaggtgg attagggcaa attaccctcg aatgggattg ggtaaatgag
      541 gttacgcaaa ccgagatttt cgcggccgaa accgataatt tcgcccttgc aaaaaaaatc
      601 gcaaaagtga ccgctagaac ctacgctcac acactaaaag gtaacaaggt tgtacgctat
      661 tattggctac gtcataccag aggcattaat gtcggaccgt tttatcaaca acagggggta
      721 agaggacaaa cagcggttga tttggatgct cgattaaccg aattaaacac tcagttatca
      781 cgcaatattg ttaatgaggt ttttgatgtt gctgcaccgg caagaggttt agaattagtg
      841 aaaacagtcg ctaatttgac cgacaaaggt actaaactgg cgtcatctca agtttacaat
      901 caggctgacg gcaagctcta tacttggaac ggtacagcat actcagctac agtggctgcg
      961 gaagatgtta ccggcaaatt atcaaaatct aaaattgata cgtcccttat ttcgcaatta
     1021 acaggtgcag ataacaccgc aaatttggca agaagattag cggaaacagc tcaaagcaac
     1081 attaaccaag agattactaa ccgacaagat gccgttactg ccgaagcaaa taaccgtact
     1141 aaagccattc aagccgaaag tgcgaattta acgaaaaaaa ttcaagctga agcaaccgct
     1201 cgtggggctg ctgttacaca gttacaaaat gttgatgctc aacaagcaca gttgatttct
     1261 gctgtcacag caaaagctga taatgctctt tcaggcttgg aagaagaaaa aacagcacga
     1321 gcaaacgccg ataaagcgga gtctcaagca cgtgaagcat taacagcaag aatgggagca
     1381 gctgaaagca atatcgtaac tattcaacgt acggtagcaa ataatgccca aagcattagt
     1441 gaagtcagtc agaatttaaa tgctaagatt gataatatta atatcggcgg tcggaattta
     1501 ttaagagaca gcgagttcaa tgcgtacaat aaatggggta gcccacaaat tgaatttgct
     1561 gaaaatgcaa atcgccgaac tatcaaagta acctcaacag gtactaacgg tcctgttggt
     1621 attgtttcat ctaatcgcca ttccacatct tatttccaac aaggagaaac ttatacactc
     1681 tcattatttg ctcgaggaag taaggcacta gactatctct atctaatgcg tcaagatggg
     1741 aataacgtta gattaccagt gattaacgtt gcctctgaaa ctgagtttaa tcattacaaa
     1801 ctcacgttca aggctccttt taccacgcaa caaggttatg tcttaatcgg ttttcggcaa
     1861 accagcacag agcagtttgt tgagtttcac agcgtcaaac ttgaaaaagg caacgtagcc
     1921 acagactgga caccagcacc ggaggatgtg gagagtgcgg ttagtgctgt ttcggctgat
     1981 ttaacgagtt ataaacaaac tcaagcggct accgattcag cacaagcaca gcaacttaat
     2041 cagttatctg tgaacttgac caaagcagag actaatttca acgccaaaat cacggaagaa
     2101 aaaaaagctc gtgttgatgc agataaagtg aatgcagata aactcacaga cataacaagc
     2161 cgtgttgcaa atgcggaatc aactattacc aatttccaat caaccaaagc gaataaaagt
     2221 gaggtggcaa gtattgccca gcagaactta cagagcattt ggcgcaccga tgcgcaaagt
     2281 gcggtggatg ccttgaaaat cggtggtgca aatctactgg ttgatagtga gtatttgacg
     2341 acagcccgtt ggggcggtag ctcacgagtg gcaagctcgc aatatggtga tcgtcgcttg
     2401 actcaagtgt ttgtgaccca agcaggcaca gggcattttg gtgtgactca aggcacacaa
     2461 aaagccacta cgcgtattcg tcagggtgaa acctatacct tgtcactaaa tgcgcagggg
     2521 acggcaggtt ttacccgcac agggttaaac tatgtgtacc ttatccgcga agatggtggc
     2581 aattttagat tgccaacttt gccgcttact gcatcattgt cccaacgccc taaagtgaca
     2641 tttactgcgc cgtggacgag caatcaagtt cggttactga ttggcgcaaa tggcatattt
     2701 gaggcgacag actggttcgc atttcacagc gttaagctcg aaatgggtaa tgttgccaca
     2761 ggctggacac caaccgccaa ggatattgac gacaaagtat cagcggttca gtccaacctc
     2821 accgcttatc aggcggcaca agctaaagca gatcaagcca aagctacgca gatttcgggg
     2881 ctcacaaccc gaatgggggc agcggaaagt aacctcactc gcaccgaacg ggcagtgacg
     2941 gaacttaatc agacaacggt gacgacactg cgtgatctaa ccgcgcgcac caaaacaacg
     3001 gaaggttcgc tctctcgttt ggaaaccgcc aaagcaagta aaactgaggt ggcaagtatt
     3061 gctcaaagct ccttacagtc a
//
LOCUS       DANMGB010000221         2998 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.222, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000221 DANMGB010000000
VERSION     DANMGB010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.222"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..576
                     /locus_tag="PXG19_002417"
     CDS             <1..576
                     /locus_tag="PXG19_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067668.1"
                     /translation="ITLIFGITACFSSLEFDESKQEKINSFLIVGNKLYVVGELHDYE
                     FEHQQVAELNNFLKSLIANKIKSVEANFEVKESKKVEGSYRIILDGKSLTESERSTVM
                     DTFHFNSAQNPSITYQAEGNLVKLANREELLQKFRFKQALEANVRYYKMKSGLQNTAE
                     GALSIVMLPVAVVAVLPFYMFWVGACATYGC"
     gene            587..1072
                     /locus_tag="PXG19_002418"
     CDS             587..1072
                     /locus_tag="PXG19_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL6067669.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(1110..1979)
                     /locus_tag="PXG19_002419"
     CDS             complement(1110..1979)
                     /locus_tag="PXG19_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6067670.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            2109..2900
                     /locus_tag="PXG19_002420"
     CDS             2109..2900
                     /locus_tag="PXG19_002420"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL6067671.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT          915 a          564 c          618 g          901 t
ORIGIN      
        1 attacattaa ttttcggcat taccgcttgt ttttccagtt tagaatttga tgaaagtaaa
       61 caagaaaaaa tcaattcatt cttgattgtt ggtaataaat tatatgtggt gggtgaactg
      121 cacgattatg aatttgagca tcagcaagtt gcggaactga ataattttct caaaagccta
      181 attgctaata aaatcaaatc tgttgaggca aacttcgagg ttaaggaatc caaaaaagtg
      241 gaaggtagtt atagaattat tttagatggg aaatcactta cagaaagtga aagaagtacg
      301 gtgatggata cctttcattt taattcagct caaaatccat ctattactta tcaggcggaa
      361 gggaacttgg tgaaattagc caatagagaa gagcttttgc aaaaattccg atttaaacaa
      421 gcgcttgagg cgaatgtgcg ttattacaaa atgaaaagtg gtcttcaaaa tacggctgaa
      481 ggagcgttaa gtattgtaat gttgcctgtt gctgtagtag ctgttttacc attctatatg
      541 ttttgggttg gtgcttgtgc cacttacgga tgttaaataa ctttttatgt attctctata
      601 cctgaaaatt ttatcggaat gcgattggtg ttgtgatcca aaaacacttt ctacctacca
      661 gcaagaatgg cttctgcacg aagggtcact tacccaaaaa ttgtatgatg tcgcaaccaa
      721 tttcaacgtg gaagtagtac aagaaaagtg gattgcaaaa aacagtgaaa aaacgaccgc
      781 ttgtaatgaa gatgtttggt cgcgagaagt gttactgaaa gatggtgaaa aaaattggat
      841 ttttgcccaa actcttgtgc caagatcaac aatcgaaaat atcgctcaaa acgtgttgga
      901 attgggcaat cagccgattg gtttatggct attttctcaa aatcctactc gcaccaaatt
      961 agaatggaca caaacagaga acggtttatt cgctcggcgt ggggtgtatg aaattagagg
     1021 gtattctctg gaaattcgag agcttttttt agaaaccttt ccttatttat aaaaaaatcg
     1081 gttggtaatg acaccaaccg attttcatct tattttgcca agaactgata aattgcagcc
     1141 atatccactt cgctcaagcc tgaatcattg gcttgattgt aggttttagt ggcttgctca
     1201 ataagcgggt aagatttgcc taatttcgca atttcttcgc ttgccaaatt aaaatctttg
     1261 gtcatatgtt tcatcataaa cgcaggcgga aattcattag cttggtacat cggcactttt
     1321 gcttggaaga tcgggctgtt cataaacgag cctgaaatca tttcgattac tttctctttc
     1381 ggaatgccat attggtcggc gaagtttaac gcctcgccat aggcttgaat gaagatgccc
     1441 agtagcgagt tgatcatcaa tttaatccca ccggctttac ccacttcacc ataatagaaa
     1501 gtggtggtac taaaggcagc gaaaagcggt ttgagcaact caacggtttc ttctttaccg
     1561 gcagccagta ccaatagttt acctgcttct gccactttgc ttgaaccgga aaccggagct
     1621 tcaacaaatt ctgcaccgtg ttgggctagt agagcttcta ccgcctggtt ttggcttggg
     1681 gaaatggtgc tcatattcac cactactttg ccgtttaatt cagccaacac ttcatcgctt
     1741 aacacctgtt gcacggcggc atagtctgca atcatcaaga aaatcacatc gtaggctttc
     1801 accaattcca acacagaagg atataatgtg ccgcctgctt caactacctt ttctgctttt
     1861 gctgggtcgc ggttgtaaac gcccacgttc actccgctat ttagcaaatg ttttgccatc
     1921 ggttcgccca tttgccctaa accaatccaa ccgactgctt gtgtattaat gtttttcatt
     1981 atttttctcc ttactgaata aagcaaattg attattgcga ttttccctca tcaagtcaaa
     2041 tagagagaac ttgaatatag caatggaaaa gagtagcatt ttagcactta cttttttgaa
     2101 caataccaat gaaaccaaca attcttttat acgattccgg aatgggcgga ttgacgattt
     2161 acgatgaaat ccgaaaagtg ttaccgcacg ctcactattt atattgcttt gataacgctt
     2221 ttttcccata ttccgagaag tcggaagcag ttttaattga gcgagcggtc aaaattgtgc
     2281 aaaaaattgc agaaaaacaa ccgcttgata tggttgttgt tgcttgtaat acggcaagca
     2341 cagtggttct gccggcattg cgtgagcatt ttaattttcc gatagtagga actgtaccgg
     2401 caattaaacc ggcagcggca atttccgaaa ctaaagtcat cggcttgctc gccactaaag
     2461 gcacggttgc tcgcccttat gttgatgaat tgataagaaa atatgctcag gattgtacgg
     2521 tagaaaaaat tggcacaacc gatttggttg aaattgttga agaaaaacaa cgaagcggta
     2581 aagtggatat gaaccgacta caaaaagtgg tcgaggcttg gcaaggtaag ccggaattgg
     2641 atacggttat actcggttgt acccattttc ccttagtcaa agctgaatta cagcaattat
     2701 tgcccgatgt gaaatatttt gttgatccgg gtgtaggtat tgccaaacgg gtgctaagcc
     2761 ttttggaaga acgcaaattt caacaaaaag ccgattttga aaatcaagca ttctgcacta
     2821 aacaaagttc tgcatttaat atcaaacaag acgttatgca gaattgggga tttaataatc
     2881 tttcggtgat tgatatttaa acaaaacaat ctgttttgat gaaaaaaggt tcagttgagc
     2941 aaaaacttta aaaaagggct tgcactcaat tttaaaatcc ctataatacg cagcacac
//
LOCUS       DANMGB010000222         2984 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.223, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000222 DANMGB010000000
VERSION     DANMGB010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.223"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..624
                     /locus_tag="PXG19_002421"
     CDS             <1..624
                     /locus_tag="PXG19_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067672.1"
                     /translation="EWFLFLLLCVGLISGRTFLLMSVISIALYFKWKYILPLIAFTAL
                     ILFLAIVFPENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLFLPTLNQFISGDGLY
                     YTETGGYYGGSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVNWFEGSWIFTLSTIG
                     ILAILNIKADTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEAEYV"
     gene            617..1582
                     /locus_tag="PXG19_002422"
     CDS             617..1582
                     /locus_tag="PXG19_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL6067673.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGILNEFNDISTKEKVRELLTRDSLSHIYSYPFDVKVVRNNPNVGAAQSRNVGATN
                     ATQEWLLFLDDDDRFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKH
                     KSELTKENILKANKIGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEP
                     LYVDEALTYCTFHTKRSSVSTDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPH
                     VMNLSRKAAGYYFEMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            1582..2382
                     /locus_tag="PXG19_002423"
     CDS             1582..2382
                     /locus_tag="PXG19_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6067674.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(2419..2925)
                     /gene="msrA"
                     /locus_tag="PXG19_002424"
     CDS             complement(2419..2925)
                     /gene="msrA"
                     /locus_tag="PXG19_002424"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6067675.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
BASE COUNT          882 a          514 c          617 g          971 t
ORIGIN      
        1 gagtggtttt tatttttatt attatgtgtt ggtttaattt ccggtagaac ctttttatta
       61 atgtcagtaa taagtattgc actctatttt aaatggaaat atatattgcc actgattgcc
      121 ttcactgcgt taattctatt tttggcgatt gtttttccgg aaaaccgtta tgttgaacac
      181 gccttagaac cggtaattaa tttattgtcc ggcaccggaa aagtcagctc ttcaaccgat
      241 aatttagtga aaaaccatct gtttttaccg actttaaatc agtttatttc cggtgatggt
      301 ttatattaca ccgaaactgg tggctattat ggtggatcgg attccggcta tattcgccaa
      361 gtattatatg gtggagtaag ttatatgttg gcgtgttttg ccttcactta ctattttgta
      421 cgcaaagtgg cggtgaattg gtttgaaggc agttggattt ttaccttatc caccatcggc
      481 attttagcta ttttaaatat taaagcagat acctttgctt tcccggggct gatgatgctg
      541 tttctaatgt tcttgtcgct gtttggaaca agcggtcgaa atgtaacatt tttttgcaaa
      601 aacaaagagg ctgaatatgt ttagtattat tgtgccttct tataaccgta atcaagaaat
      661 caatgcgttg cttgagagtt taaagcaaca aactgcatat aattttgaag tgatcattgt
      721 tgatgactgc tcaaaaatac cggtcagtga aactttagga attttaaatg aatttaacga
      781 tatttctact aaagaaaaag taagagaatt acttactaga gatagtttat ctcatattta
      841 tagctatcca tttgatgtga aagtggtgcg aaataaccca aatgttgggg cggcacaaag
      901 ccgaaatgta ggggcaacta atgccacaca agaatggcta ctgtttttag atgatgatga
      961 ccgctttatg cctgaaaaat gcgaacgttt agcggcagag attgcgaaca atccaactgc
     1021 caattttgtg taccacccgg caaaatgtga aatggtaaat gagggtttta cttatgtcac
     1081 caagccgttt aaacataaaa gtgagctaac taaagaaaac attctaaaag cgaataaaat
     1141 tggcggaatg ccgatgattg gcttgaaaaa atcactcttt tgtaaaattg gtggattatc
     1201 tgaccgcttg cgatcacttg aagattatga tttcttactg aaattattgg aagaaccgag
     1261 ttttgagcca ttgtatgtgg acgaagcctt gacctattgt actttccata ccaaacgctc
     1321 cagtgtttca accgatacca ctaatacaga aaaggctatt gagtatattc aacaaacgta
     1381 tatcaaaaca cctgaggcga ataattttaa gctcaattcg ctttatattt taagttatcc
     1441 acacgtaatg aatttatccc gcaaggcagc cggttattat tttgagatgt ttaaacagac
     1501 taaaaatatc aaacaactga ttattgcgtt ggttattttt atttcgccga agttggcgat
     1561 taatttgaaa aggtttatgt aatgaaattt tccgttttaa tgtcgttata cattaaagag
     1621 caaccgcaat atttaagaga atgttttgaa agcttgaaag tacaaactgt gcaggctgat
     1681 gaaatcgttg tttgttttga tggtgcagtt acgcctgaat tagaggcgat tgtagaagaa
     1741 tatagtgcaa ttttgccgat taatgcggtg aaattcccac aaaatcgagg tttaggtaaa
     1801 acgctaaatg atgggctaac ctattgtaag aatgaatggg ttttcagaat ggatacagac
     1861 gatatttgta tgccggaacg tttcgagaaa caagtggcat ttattgaaca gaatcctgaa
     1921 accgtgattt ttggcggcca aattgctgaa tttgggcaag atattcacga tcttgtcgct
     1981 taccgcaatg taccaaccac ggtggaggaa atcgtcagat tcactcgctt gcgttgcccg
     2041 tttaaccata tgacggttgc ttatcagaaa tccaaagtgt tggaagtcgg tggctatcaa
     2101 gatctgcaag aagattacta tttatggatc aaactcattg ctcaatttaa acaagtggca
     2161 aacttgccgg atttattagt gtatgcccga gtcggtaacg gaatggttgg cagacgccgt
     2221 ggaatggccc aagcagaggc agaatggcgt ttatataaat taaaaaaccg ctgccagatt
     2281 cacgatccga tttcaggttt tgggattttc ataatgcgtg caattcctcg tttattaccg
     2341 gtttcagcac tgaaaaaagt gtacggtttg ctcagaaaat aaagctaaaa aaaccacaga
     2401 ttgctctgtg gttttttgtt attgattctt caaaatctca ttcattaatt gaatatcaat
     2461 atggcagtag ccgttcgggt tttttactaa atattcttgg tggtactctt cggcagggaa
     2521 atattgctct aacatttggt tttccactgc cagcggctga tcaaattggg tttgtaattg
     2581 tgcaagtgcg gcggttacca ccggttcgtc ttgtgggtcg gtataataaa taccggtgcg
     2641 gtattgaata ccgatgtcgc caccttgttt gttaatgctc accgggtcta ttactttaaa
     2701 gaagtaatct agtaattttg ccaagctaat ttgattggca tcataagtca cttttaccac
     2761 ttcagcgtgt ccgctaccgg cacacacctc ttgatagctt gggttatcgg tattaccgtt
     2821 ggcatagcct gattgtgcct taatgacacc tttaatccgt tgcataaaag attccacgcc
     2881 ccagaaacag ccaccggcta agtaaatttc acgaatattt tgcatattac ctctctataa
     2941 ttgtaaattt ttcgataaat ttgactgctt gtgatgaata ataa
//
LOCUS       DANMGB010000223         2899 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.224, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000223 DANMGB010000000
VERSION     DANMGB010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2899
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.224"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            57..2096
                     /gene="malQ"
                     /locus_tag="PXG19_002425"
     CDS             57..2096
                     /gene="malQ"
                     /locus_tag="PXG19_002425"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6067676.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2164..2895)
                     /locus_tag="PXG19_002426"
     CDS             complement(2164..2895)
                     /locus_tag="PXG19_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL6067677.1"
                     /translation="MGCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTW
                     IATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQ
                     FIGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGS
                     ALAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLV
                     MYVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          929 a          612 c          571 g          787 t
ORIGIN      
        1 tattaatctt cacaagatcg ttattttaac aaatacagta aaggaaaaaa gtcataatgt
       61 caaacaaaca aaatacagct cactattttt actccccaaa tattaaagag tatgccagcc
      121 cctctgcttt tgagaaaata gagcggcttt taaataccga taacgatttg caaaaaaata
      181 atcaaattct accgcttgtt aaagtgatta ctcagccaaa tgccgagcaa caagcggtcg
      241 aaatttcgct gaattttaca aatgtagcaa agtggcaaat tgtgcttgaa aatggtgagg
      301 ttcggaacgg tgaaattaag gcagagcaat cagttctaac cctgcctgcc gatttgcctt
      361 taggctatca tcagctttct atttcaactg aaaatgatga agaatcttgc tcgctgattg
      421 taacaccgcc gaaagctttc cagcctaagc cattggaaga aaggaaaaag ctctggggtg
      481 catttttaca gctttatact ttgcgttccg ataacaactg gggaattggc gattttggcg
      541 atctcaaaca attccttgcc aacatttctg attatggtgc agattttgtg ggcttaaacc
      601 ctattcacgc cctctttccg gcagatcctg atgcggcaag cccttacagc ccgtcctttc
      661 gactttggca aaatattatt tatattgatg tttcagcagt agaagccttt caacaatctg
      721 aacaggctca acaatggttt cacaccaaag aaactcaaca gcaacttgcc gaattgcgag
      781 ccaaagattt tgtcgattac agccaagtag cgcaactgaa attaaaggct ctgcagtttg
      841 cttttgagca tttttcacag tcatctcaac aacaatcgca aacagcgttc gatgccttta
      901 ttgagcaagc aggcgagcca ttaaaaatcc aagcaacgtt cgatgctttg caccactgga
      961 tttcatctga atttggcgaa aaaggcggct ggacaaactg ggcggaggaa tatcaaagtt
     1021 actattcgcc taaagtagct gaatttcaaa tatcgcaggc aacgcagata cgtttttata
     1081 tgtggttgca atttgtggca aaccagcaat tagcagaatg caaccggttt gctcaatcac
     1141 tttcaatgcc gattggtttt taccgcgatt tagccgttgg tgttactcaa agcggagcgg
     1201 aaacttgggc ggataaagcc ctatttgtgc aagaggcgtc aatcggtgca ccacctgata
     1261 tgcttgcccc gaacggacag agctggggac tttcgccaat gcacccgcat attctacaaa
     1321 gccgaggtta tcagccgttt attgatttag tgcgtgctaa tatgaaacat tgtggggcat
     1381 tgcgaatcga ccatattctc ggcttcgccc gtatgtggtg ggtggcgaac ggtgaatcgg
     1441 caaaagaagg gatttatgtc cgttatccgc tcgaagattt gctctctatt ttggcattag
     1501 aaagccaacg tcaccaatgt ttagtgattg cagaggcact tggcattgtg cctgaaggca
     1561 ttttggactc tctcgagcaa aagggcattt ttgcctacaa tgttttttat tttgaaaagg
     1621 cagaaaacgc gtttaaaccg ctggaaaatt atccttacca agcgatgaca actctaagca
     1681 cccacgattt accgactatt caaggctatt ggaaaggcta tgattttgag ctaggcgaaa
     1741 aatttgacac ttacccaagc aaagccgtat tgagaaagct gaaagaagag cgttcgtacg
     1801 accgcttgaa tatccgtaat gcggtggaaa aagtgatagc actcgagcca aatgaagtgg
     1861 gagtaacaat aaaatttacc caccaattac aacgctatgt ggctcacact cacagtgcat
     1921 tattcggtac acagcccgaa gattggctca atatgttaga gccggtgaac attccgggaa
     1981 ccagcaccga ataccctaac tggagaagaa aattatccgc aaccaccgag cagatttttg
     2041 caaataaaga tattcaacaa ctgctaaaag atataaacga aattcgtaaa ggataataac
     2101 aagcggtcat ttttaggtaa atttttacaa aaaatgaccg cttgtaattt gtatttattc
     2161 gctctattgc tgatgttttc tgtgaagttt aatccagttg taataaccgt aaatagagtt
     2221 acataaatac atcacataca tcaccaacag cggcaagctg gtttcgccgt tttggaagta
     2281 cattgccgtc cataaagaaa tggtcataat attcacgata atccacaatg cccattgctc
     2341 acggtagcga agtaccatca aaatttgtgc cacaatcgaa ataaccactg ttgcaccatc
     2401 taatatagct aacgcactgc ctaaatattt aagcaattca atataaagaa atgtgccgat
     2461 aatggtggta atggcgacaa tcacccactg ttttgcggtt aaagctttag caattacctc
     2521 ttccacacca gcattattta ccgtgttttc gctggtcata tttttacgcc agaaatagaa
     2581 accgataaac tgcaccggca catatacaag taaattcagc atcatttcac catataactg
     2641 aaaggtataa gagatataag cataaagcga aacggaaatt aagccgaata gatagttact
     2701 gatttttcct ttaccgacaa ataccacgca taaaatacct gttattgccg caatagttgc
     2761 aatccaagta tcgggttgat aaataaaaat accgatttga atcgctaaaa aaacaatcaa
     2821 ccaacttgcc tcaaaagtag tccaaccact aaaaaactct tgttttaact tagttgaaaa
     2881 agatgaacag cccatattt
//
LOCUS       DANMGB010000224         2854 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.225, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000224 DANMGB010000000
VERSION     DANMGB010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.225"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            416..709
                     /locus_tag="PXG19_002427"
     CDS             416..709
                     /locus_tag="PXG19_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL6067678.1"
                     /translation="MFKVIFMALSAIVNYLISDFLIKGVIFLSVYFLTSELLPVVIEM
                     LVSRKLIPDLNALFGQLPESMWYFLNIFQIPMAISLMISAMISRFVRRMPFIG"
     gene            719..1258
                     /locus_tag="PXG19_002428"
     CDS             719..1258
                     /locus_tag="PXG19_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067679.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYGLNKEK
                     IHQYLLRKNKKLMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEVWRI
                     WGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTECKN
                     TLVWGCVIVIGLMFFKERI"
     gene            1189..1752
                     /locus_tag="PXG19_002429"
     CDS             1189..1752
                     /locus_tag="PXG19_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067680.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            1749..>2854
                     /locus_tag="PXG19_002430"
     CDS             1749..>2854
                     /locus_tag="PXG19_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL6067681.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGSLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSNENTKTDI"
BASE COUNT          944 a          393 c          571 g          946 t
ORIGIN      
        1 gtcttgtgtt taatgagagg gttgttagaa taaaacatga gagtttcctt tttgtttaga
       61 ttgatttttg acactcatat tctaaacggg aaactctcac tttttagagt gaattgtcag
      121 atcaagtctg atcttctaca cctgatatta atttgcctga tctggaagtt cctacggcgg
      181 aatcaattat atcccctttt aaaaaattgc taccagattt acagaatttt gaactgaata
      241 aacgaaccgc acaatgccct gtttggacat ttaatattga atacttgaga tttcattatg
      301 aacttagaga acattgcgat ttgatagaac cacataaaga aatcttaaag ctattattcg
      361 gcattatttg ggcgtttatt gctttacgtt atgtattaag tgcttaggag gataaatgtt
      421 taaagtgatt tttatggcac tatcagcaat tgtgaattat ttgatttcag attttttaat
      481 taagggtgtc atatttttat ctgtctattt tttaacttct gaactacttc ctgtagtaat
      541 agagatgctt gtgtctagaa aattgatacc tgatttaaat gcgttatttg ggcaattgcc
      601 tgaaagtatg tggtattttt taaatatttt tcagatacca atggctattt ctttaatgat
      661 ttcagcaatg atttcacgtt ttgttagacg tatgccattt attggataga ggagtgctat
      721 ggctgtttca gcgtatatag ggattcctgg aagcggcaaa tcgtatgaag tggttaagtc
      781 agtaatttta cctgctgttg cttcgaatcg aagagttgtt tccaacattt atggattaaa
      841 taaagagaaa attcatcaat atttactgcg taaaaataaa aaattaatga ttgaagagct
      901 tggtgaagtc atatatgtaa cgaatgaaca atgcttggaa tcggattttt taccatcaat
      961 ggacgaacaa gattcatttt gcaaagctgg ggacttgata attattgatg aagtttggcg
     1021 tatttgggga aacgacaagg atattccaaa aaatcatcgt tcatttattg ctgaacatcg
     1081 acattttgca gatcctataa caggtgtaac ttgtgattta gtcgtaataa atcaagatat
     1141 ttctcaaatt ccaagattta ttaaagaagg attgagacaa cttaccgaat gcaaaaacac
     1201 gttggtttgg ggttgcgtaa tcgttatcgg gttgatgttt ttcaaggaaa gaatttagct
     1261 aaaaagaacc ggacaaattc ttatcaagaa aaatatgata aaaaaatatt tgagctttat
     1321 aaatcttatg aatctgatgg tgcaagagaa gcggttacag atagtaggca atctatattt
     1381 tcatcttttt gggtcaaggt atggattatt cttttaccat tggcattatt ttattgtggc
     1441 tataaccttt acattttcct aaatggttca gagagtgaag taagccataa tactgaacag
     1501 gctaaatttg cttctgatga aaaccataac gatatagtaa ttcatttact tcctactatt
     1561 ggaaaacctt tatcaactaa atggcgaata acaggggaac taaaaaggga taataaatca
     1621 tttgtgatct tagctgacaa tgaaaaccgt ttaagacttg agcctagtag ccagtttagt
     1681 tttagcggtc gaatgttgca aggagagata gatggtggaa tagttagtta tttttcggga
     1741 gaatctaaat gaaaatccat caattagggc tattgctcat gattagctca ttttcttatg
     1801 ctaagaatgt tgattttaaa ttagaagctg tgccgttacc gaaagcaata tcaataatat
     1861 acgatgaagt gctacaaaag ccatatatgc ttgatcctaa attatctaat gattcaaggg
     1921 ttattagctt tcatacaaca gagcaacaga attttgagca gtttattcaa cggtatttca
     1981 gcaatatgaa tatcagtgta tcagagaaaa aaggtgttgt ttatattgga catattgaac
     2041 caaaacagcc gaaagtaata aaacgtagtt ttgtgtattc gcctattcat cgtgatgttg
     2101 attatttggc tagcttcctg aaagatggaa cagaaggaaa ccaagttttt gcaagtggcg
     2161 acaagcttgt atattatggt acttctgaag atattgcacg agtgaaaagt atcttgaaat
     2221 caatcgacac aaaaagccgt gaagtagtgg taactggtta tgtttttgaa gtgcagaata
     2281 ttgaaaaaga gggtagtggc ataaacttgt tagcgaaatt gctatcagga aaattaggca
     2341 ttagtgttgg ttacaagcaa agttatgaaa actttatcac cgtgaatgca ggaagtttag
     2401 atgcaatgtt tgaattgttt cgcacagatc agcgttttag ggttgtcagc agtccgacat
     2461 taagagtaaa atcaggctca agaggtaatt tttcagtagg ctctgatgtc cctgtattat
     2521 cgaatgtaac ctatcaggac ggaaggccta ttcagtcgat tgaataccgt tcaagcggtg
     2581 taatatttga tattcagcca acgataaaag ataaagcgat tgatttaaaa attcaacaac
     2641 tatcaaattt catcaaaaca gataccggtg taaataatag cccaacgttg gtaaagcgtg
     2701 atctggtaac agatgttacg gttaaaagcg gtgatgttat cgttttaggt gggttagctg
     2761 aaaataaaat atctaatggc gaaaccagtt tttcattgct acctaaaggt tggttaagtg
     2821 gaaaatcaaa tgaaaatact aaaacagata ttat
//
LOCUS       DANMGB010000225         2822 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.226, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000225 DANMGB010000000
VERSION     DANMGB010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.226"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            6..584
                     /locus_tag="PXG19_002431"
     CDS             6..584
                     /locus_tag="PXG19_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067682.1"
                     /translation="MIEFDQIDDSFYHFPFRPRPGDTSSDTATPCIGGVDLVSNPEKV
                     ELIPEAAHSPMLKKLLTDLNTPNSKLLTLGCAYWAHKDNRDTSYAYLEFSFREHSVAT
                     NLEFIRSIDEQFEQFLQENKKQLSIEFSVPEQAFDIVSQALFWSIRPFSYFGSEERIL
                     IYFQAGSPRHQDLEIFLDLLHRFLTEYLVVPA"
     gene            complement(599..674)
                     /locus_tag="PXG19_002432"
     tRNA            complement(599..674)
                     /locus_tag="PXG19_002432"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(639..641),aa:Trp,seq:cca)
     gene            1101..1295
                     /locus_tag="PXG19_002433"
     CDS             1101..1295
                     /locus_tag="PXG19_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067683.1"
                     /translation="MALSRTEIVNRSNAKRGIKLKAFKLHESTIAQIEQLAQQLNIPQ
                     NQLIKLAVEKLQEQTNFTTG"
     gene            complement(1263..1628)
                     /locus_tag="PXG19_002434"
     CDS             complement(1263..1628)
                     /locus_tag="PXG19_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067684.1"
                     /translation="MQIDVKGVLNLWGGYVRFTDCKGYPTMQAFMRESPQERTKQRYL
                     ARLDDDTLEKVDRQMRKLQANDKRQFDVLFYKYAVGLENKQVWQKLSLSKTSYHTELL
                     LAERFMEGALAGSEIRLLL"
     gene            complement(1618..1986)
                     /locus_tag="PXG19_002435"
     CDS             complement(1618..1986)
                     /locus_tag="PXG19_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL6067685.1"
                     /translation="MSDWLEIALPYPPSVNHYWKHTRNGRHYISDKGKAFRAEVVKIC
                     KMFDPFKGAVQTVLQIYYPDKRKRDPDNLEKALWDALKIGGLIEEDDNQILVDKRTIT
                     AGFKKGGMVVLKIKAVGNAN"
     gene            complement(1983..2267)
                     /locus_tag="PXG19_002436"
     CDS             complement(1983..2267)
                     /locus_tag="PXG19_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005672808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 domain-containing protein"
                     /protein_id="HDL6067686.1"
                     /translation="MANLRKEAKGRECQVRLPGICNHNPETVVLAHYRMAGLNGVGMK
                     PDDIFGAWACSSCHDECDRRTRKLEADYVRQAHAEGVFRTQAILRREGKL"
BASE COUNT          889 a          660 c          449 g          824 t
ORIGIN      
        1 taaaaatgat tgaatttgat caaattgacg atagtttcta tcacttccca tttagaccac
       61 gtccgggcga cacttcaagc gacactgcca caccttgtat tggtggagta gatcttgttt
      121 ccaatcctga aaaggtagaa ctaataccag aagccgcaca ctccccaatg ttaaaaaagt
      181 tactcacaga cttgaacact ccaaacagca aacttctaac actaggctgt gcttattggg
      241 ctcataaaga caatagagat acatcatacg cttacttaga gttttcattc cgggaacatt
      301 cagttgcaac taacctagaa tttatcagaa gtattgatga acagttcgag caattcttgc
      361 aagaaaataa aaagcagtta tctattgaat tttccgtgcc tgagcaagca tttgatatag
      421 tttcacaagc tcttttctgg agtattcgtc cattttctta cttcggaagc gaagagcgca
      481 tcttgatata ctttcaggct ggtagtcctc gacatcagga tttagaaatc tttttggatt
      541 tactacaccg ctttttgact gagtatttag ttgttccagc ataacattta ctcgcatttg
      601 gaaagggtgg ttggactcaa accaacaacc aacgattttg gagaccgttg ctctacctat
      661 tgagctacac ccttaaaatc cgtaaacaaa aaagccccaa gcatttctgc tcagggctgt
      721 aaaattcttt taagttcacc acctatgcaa tgaaccgcaa cttaccataa ataatataga
      781 ttaagtccga actttgcaac actttttaat catttaaatg caaaaaagcc cataatttac
      841 aaaaccatgg gctttttaac gatattttgc ttgaatatat tggttatcca acatataata
      901 aacttgtttt cagtaatagt gctggaaacg agccggtggc gacctttaat cccaccgact
      961 tttggaggga taacaaatgc tttaccgcat tatcctagtt atcattctct tagtgattag
     1021 cctgccagca tactaattga atgaaactaa gtagggggag aaatctccct actcttcaaa
     1081 acctatatta aggatttatg atggcactgt caagaaccga aattgtaaac cgtagcaacg
     1141 caaaacgggg aattaaactt aaagccttta aactgcacga aagcacaatc gcacaaatcg
     1201 agcaacttgc ccaacagtta aatattcccc aaaatcaact aattaaatta gccgttgaga
     1261 agctacaaga gcaaacgaat ttcactaccg gctaatgccc cctccataaa tcgttcagca
     1321 agaagtaatt ctgtatgata tgaagtcttg ctgagcgata acttctgcca aacctgctta
     1381 ttctctaacc ctactgcata tttataaaat agtacatcga attgtcgctt gtcgttcgct
     1441 tgtagcttcc gcatttgccg atcgactttc tcaagcgtat catcatctaa gcgggctaaa
     1501 taacgctgtt ttgttctctc ttgtggagac tcacgcataa atgcctgcat tgtcggatag
     1561 cccttgcagt cggtaaaacg cacatatcca ccccataaat ttaatacacc ctttacatca
     1621 atttgcatta cccaccgcct taatctttaa caccaccatt ccccctttct taaaacctgc
     1681 cgtaatggtt cgcttatcga ctaaaatttg attatcgtct tcttcaatta agccaccgat
     1741 ttttaatgcg tcccacaagg ctttttctaa attatctgga tcacgcttgc gtttatcagg
     1801 atagtaaatc tgcaataccg tttgtaccgc tcctttaaac ggatcaaaca ttttgcagat
     1861 tttcaccact tccgccctaa aggctttccc cttatctgaa atataatgcc taccgtttcg
     1921 ggtatgcttc cagtaatggt tcacactcgg cggataaggc aacgcaattt caagccaatc
     1981 actcataatt tcccttctct ccgtaaaata gcctgcgttc taaatacgcc ctctgcatga
     2041 gcctgtctca cataatccgc ttctaatttg cgagttctac ggtcgcactc atcgtggcag
     2101 ctactgcaag cccacgcccc gaaaatatca tcgggtttca ttcccacacc gtttaatcct
     2161 gccattcgat agtgagccaa taccaccgtt tccggattat gattacagat acccggtaaa
     2221 cggacttggc actctctgcc ttttgcctct ttgcgtagat tagccattcc aacctccttg
     2281 gtctctttta tcaaaccact caataaaaaa gagtgaaccg gcacatacac taagaatagc
     2341 gatagtgatt aaaattacag tcagttcatt gcactggctc acttattaat ctccttaaat
     2401 taaataacat tccacataaa aggaataatc cgcaaccgat aacaaacgat attaaaatcc
     2461 aaaaccctaa ctgaataatc accataaacc acggtgcgtt tttaatattc attaaagtag
     2521 tattaatcgc caataaacag cttggaataa tgccaaataa catcacgagt gcgatagttt
     2581 caaagaattt ttgtcatttt gatttctcct acccccgaat tcgagggaat taataaacac
     2641 acactaaatc ggattaaaat cgctcttaaa gtcatcaagg cattcttgat atttccattg
     2701 accgataaca ataaaactac cgactgccac aaaaaatgct aatggataaa tcaataagta
     2761 cccgatatat ctaagagtaa gaattgacaa agaaataagc actgcaataa ttctgaatgg
     2821 ca
//
LOCUS       DANMGB010000226         2817 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.227, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000226 DANMGB010000000
VERSION     DANMGB010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.227"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..527)
                     /locus_tag="PXG19_002437"
     CDS             complement(<1..527)
                     /locus_tag="PXG19_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL6067687.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPE"
     gene            complement(511..1035)
                     /locus_tag="PXG19_002438"
     CDS             complement(511..1035)
                     /locus_tag="PXG19_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6067688.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNENGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            complement(1427..1600)
                     /locus_tag="PXG19_002439"
     CDS             complement(1427..1600)
                     /locus_tag="PXG19_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067689.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            complement(1605..1955)
                     /locus_tag="PXG19_002440"
     CDS             complement(1605..1955)
                     /locus_tag="PXG19_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL6067690.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            complement(1928..2497)
                     /locus_tag="PXG19_002441"
     CDS             complement(1928..2497)
                     /locus_tag="PXG19_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6067691.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            complement(2490..2735)
                     /locus_tag="PXG19_002442"
     CDS             complement(2490..2735)
                     /locus_tag="PXG19_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067692.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
BASE COUNT          755 a          693 c          471 g          898 t
ORIGIN      
        1 ttttcaggtg gattttgcct gaagcgagta tctgttgcgc tccctctatt ttccgggttc
       61 caagttaccc atatttcgga attattctca cgcacggttg gaattaattt ccgccaagca
      121 gtttcgctta ctgtttctgc ttcatctatc cacgcaatca aaatacgggc tttagatttg
      181 atgctatcta agttatgccg aagtccggaa aacacataag aaatccgccc atctttagtg
      241 cgaacatact tctcgccgac atcaaaaaaa tttgctaaaa aaggctcaga cttgatcgcc
      301 tgtttaactt cttcaagaga gctttcttcc aatgagttca taaactcacg accgcaaaga
      361 ataacgccac tttccccttg cattgctctt ttataagcag acactgccga cattttggca
      421 aatgcccgag tcttgcctga acctcgccca ccataagcac ctttgtaacg ataatctttg
      481 gcaaaaacag gcaacagttt aggtggtagt tcaatctgtg ctttcatcgt ctaaactcgg
      541 agcaattaat tcaatcacca tcggtcgatt cagtgaacca tcagaattaa ttaaatcaac
      601 cttatctttg aacattccta aatgtttacc gagtaactca agagctttat tcgcagcagc
      661 aggttcaaac tttgtttttg caatatcaaa accgactaac tcgccatttt catttttcgc
      721 aacatcagtt tctgtcacaa tttttttacc agtactcatt gcaatcactt caagcaaccc
      781 atttagcaca tcatcttgtg taatttgggt tctctccgag cgtttatttt gagcctcctg
      841 aattgcactt ctgatttcag gttttctcag gttctcttct ccgattgagt atgctgtttt
      901 ttcgctgtac ccagctctaa tagcagcttg agtcgcattc aagtcaatga gatactcttc
      961 tacaaatcgt ttctgtttat cagttaattt acccacgcct ttagacgtgg ctttaacctc
     1021 gcctttttta gtcattgggt taaattcctt tacttcattg catttaatag attagcaata
     1081 gcattaatca gctttggcga cacgaacgcc aaaataggga ctgttactgc taggcttatt
     1141 tgccataaac catattccat aagaatctcc ttgatggtta cggttaaaaa tgtaataatt
     1201 tccataactt gttactcatt ccgtttcaat gggtaataaa aaaacctcga acaccgcaaa
     1261 tgttcggggt tttgttttat ataaatcaca tcacttaggt atttcctcgg tgttttatcc
     1321 aaccaacccc gaaaccatag ctaaattatg taatatttac tttccatcaa aacaaaaagg
     1381 gagctgttac gctcccattt tcaatagcgg ttaattagat aattagctat ttaaaccctt
     1441 gtttggtttg tgcttgccat tctctgatac ggtcaatttg attagcacac aaatcacgct
     1501 ctcccatcac tttgacgaga tactcaaccg tatcgccata ggttctaccg ctaaattctg
     1561 ttcgcccaca cggcacaagg taagctgccg gcggatacaa atactcagtg cttgtgattg
     1621 ttctgctggt gcagccgctt aatgctatca gcaacgccat taggcaaatc agctttagca
     1681 caactgtctt gtgccagtat tgatgtaatt tcattcttgg ccatctccac tttattccgc
     1741 agctcatttg caattttttg gattttttcg accgcttgtc gctcttgctc taagctatcg
     1801 gttagccgtt gattggcttt ttgctgctgc tcaatggttt gggcttgtgc gcggttctca
     1861 gctcttaagc tatctatcat ctgtgactga ccccataacc atacacacaa gcccaaaatc
     1921 acaatggcta tcgtgccact aatccagtta agcataatgc tttctccttt tcacggcgga
     1981 taaccaatcc gttcaatacc ttaccactgg cacgaataaa gtcaggtagt cgatgacaca
     2041 tctcctcaaa ttgtttattc actgcgagtt tatggatggt agtctgcaca tattgacctt
     2101 gtttattccg ataaaatctc atgttataac aacccatatt aaatacagcg gacgtcattc
     2161 ccgaaaattg attatcgttc atgtctttac cattaaaatg acgattgaca caactctccg
     2221 caatcttcaa atcttttgcc caacgctcag caatttcttt gtcagaataa atacgatttg
     2281 ggtcaatctt ttcaccgcca aactccgttg agccaatgcc aaccgtgatt acatcggcag
     2341 ggcatttata cggatcacgt ctgcaaccct cagcattacc gataatctct aatccagctt
     2401 ggttagtgcg gatttcggga tgttgatatt ggactaatgt aataatggca gcgataccac
     2461 aaacgatacc actgccatat ttaaggcttt tactcatcac ttaacccctt tctcaatctt
     2521 gccattttcg cttgatgaag ctcttccgct cgctcatctt cacgcttacg cctacgccat
     2581 tcatcaaatc gctgaataag ccctgcaatg gcagtaacaa taccgatagc aagactaagt
     2641 aacattaaat tctgctgttc gccgagccac gccagccaag tgctaaatcc cgaccaaata
     2701 tagctctgcg ttcccatatc tttcattaac ttcatactcc accccgtttc gaggcaataa
     2761 aaaagcccag tcgtgagact gagctttggt taaaaattct gctagaatac tgttccc
//
LOCUS       DANMGB010000227         2807 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.228, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000227 DANMGB010000000
VERSION     DANMGB010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.228"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1642
                     /locus_tag="PXG19_002443"
     CDS             <1..1642
                     /locus_tag="PXG19_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL6067693.1"
                     /translation="DLNADTSQAFLNELDQTLWTAADKLRKNLDAANYKHIVLGFIFL
                     KYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQEFSQILAEELEQRDYYAAENIFW
                     VPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAG
                     FGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGG
                     QYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQES
                     NSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESL
                     ANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIV
                     QADLVEAMIALPNQLFTNTQIPACIWIINKAKARKGEVLFINATQIGYLKDRVLRDFT
                     ADDIAKISDTYHNWQKQNGYENIPAFCYCATLDEIAKNDFVLTAGRYVGAVQEENDGV
                     PFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI"
     gene            1632..>2807
                     /locus_tag="PXG19_002444"
     CDS             1632..>2807
                     /locus_tag="PXG19_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6067694.1"
                     /translation="MAFNQYVFSDIVELISEKIKIKDLKKENYISTDNMLPNFGGITL
                     AENLPNSASCNRFAKKDILFSNIRTYFKKVWLAEFSGGCSPDVLVMRSKNTDILLNEY
                     LFLLIRSDDFINFTVISANGAKMPRGDKNAMKGFIFNIPSIEYQKKCIANYFAFDQKI
                     QLNTQTNQTLEAIAQAIFKSWFVDFDPVRAKAAALSEGKSEHEANLAAMSVICGKDTS
                     ELNDTEYKALWQIAEAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTPPRKESEWFSDN
                     ANDTEWISIKDMGNQGLFITESSEYLKAEAVDTFNIKRIPENTVILSFKLTVGRVSIT
                     TKETTTNEAIAHFKIPSSSNLSSEFLYCYLKNFDFNNLGSTSSIATAVNSKMIKEMEI
                     "
BASE COUNT          908 a          632 c          561 g          706 t
ORIGIN      
        1 tgatctcaac gctgacacaa gtcaagcctt tttaaacgaa ctcgaccaaa ccctctggac
       61 tgccgccgac aaactgcgta aaaacctcga tgccgccaac tacaaacaca tcgttcttgg
      121 ctttatcttc ctaaaataca tctccgacag ctttaccgat ttccaagcca agctaaaaac
      181 ccagcttacc acccccgaaa gcgaactcta tcttgaccct gcactatttg acgaacaaga
      241 atttagccaa attcttgccg aagagttgga acagagagat tactacgccg ctgaaaacat
      301 cttttgggtg ccggagcaag cccgctggga caacatcaaa tcattaagca aactcaatct
      361 tggcgatgaa ttgccttggg gagacaaatt taaaggtgtc agccgcttga ttgatgatgc
      421 ctttgaagcc atcgaacggg aaaaccccaa actcaaaggc gtactccaac gcattgccgg
      481 ctttggcgtg cctgatgaaa tgctcacagg cttaattgac ctgttctcac gcaccaattt
      541 cacccagcct atgcacaatg gcgaacctgt gcatctgcaa gccaaagaca ttttagggca
      601 cgtctatgaa tactttcttg ggcaatttgc ccttgccgaa ggcaaaaaag gcggtcaata
      661 cttcacgcca aaatccatcg ttaccctgat tgttgaaatg ctcgaaccct attcagggcg
      721 gatttacgac ccagctatgg gcagcggcgg cttttttgtg caagctgacc gctttattca
      781 ggctcacgca ggcaaccgca acgccatttc cgtttatggg caagaatcca actccaccac
      841 tcgcaaactg gcggtgatga atatggcgat tcgtggtatt ccctttgact ttggcgacaa
      901 gcccgaagat accctactaa accctttgca catcgacaaa aaaatggatg ttgtgatggc
      961 aaatccgccc tttaaccaaa aagagtggtg gaatgaaagc ctagcaaacg atccacgctg
     1021 ggcatacggc acaccgccgc aaggcaacgc caactttgcg tggttgcaac atatgattta
     1081 ccacctctcc cccaaaggca aaatggcact cctgctcgcc aacggctcaa tgagcagcca
     1141 aacttcaggc gaaggcgaca ttcgcaaaaa catcgtgcaa gctgaccttg tcgaagcgat
     1201 gattgccctg cccaatcagc tattcaccaa cacccaaatc cctgcctgca tttggattat
     1261 caataaagcc aaagccagaa aaggtgaagt gctgtttatc aacgccaccc aaataggcta
     1321 cctgaaggac cgcgtcttgc gtgattttac cgctgatgac atcgccaaaa tcagcgacac
     1381 ctaccacaac tggcaaaaac agaacggcta cgaaaatatc cctgcgtttt gttattgtgc
     1441 cacgctggac gaaatcgcca aaaacgattt tgtgctgacc gcagggcgat atgtcggtgc
     1501 ggtacaagaa gaaaatgacg gcgtgccgtt tgcagaaaaa atgcaggaat tgaccgcttt
     1561 attgaatgaa caatttaaac aagggcggga attggaacag caaatcgcag agaatttaaa
     1621 ggggttggga tatggcattt aatcagtatg tattttcaga tattgttgaa ttaatatccg
     1681 aaaaaataaa aatcaaagac ttaaaaaaag aaaactatat ttcgacagat aatatgctgc
     1741 ctaattttgg tggaataaca cttgctgaaa accttccaaa ttcagcttct tgcaataggt
     1801 ttgccaaaaa agacattttg ttttccaata taagaaccta ctttaaaaaa gtttggcttg
     1861 ctgaattttc aggtggttgt tctcctgatg ttctggtaat gcgcagtaaa aacacagata
     1921 ttttattaaa tgagtattta tttttactta tccgttctga tgattttatt aactttacag
     1981 ttatatcagc aaatggagca aaaatgccac gaggggataa aaatgcaatg aaaggtttta
     2041 ttttcaatat cccaagtatt gaatatcaaa aaaaatgtat tgctaattat tttgcctttg
     2101 accaaaaaat ccaactcaac acccaaacca accaaaccct agaagccatt gcacaggcaa
     2161 tcttcaaaag ctggtttgtg gattttgacc ctgtgcgcgc caaagccgcc gccctaagcg
     2221 aaggcaaaag cgaacacgaa gccaaccttg cggcaatgtc ggtgatttgt ggtaaagaca
     2281 ccagcgagtt aaacgacacc gaatacaaag cgctttggca aatcgccgaa gccttcccaa
     2341 gtgagtttgg agatgaaggg ttacctattg gctggaaatt caatcaagca gacaatttat
     2401 ttgatgttgg tattgggaaa accccaccaa gaaaagagag tgaatggttt tctgataatg
     2461 caaatgatac agaatggatt tctattaaag atatgggaaa tcagggatta tttatcacag
     2521 aaagtagcga atatctaaaa gctgaagccg tagatacatt taatattaaa agaattcctg
     2581 aaaatactgt aattttgagt tttaaattaa ccgttggtag agtttcaatt acgacaaaag
     2641 aaacaactac taacgaagct attgctcatt ttaaaattcc tagctcatca aatctaagct
     2701 cagagttttt atactgctac ttaaaaaatt ttgattttaa taatctagga agtacatcat
     2761 caatcgcaac ggcagtcaat tcaaaaatga taaaagagat ggaaatt
//
LOCUS       DANMGB010000228         2789 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.229, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000228 DANMGB010000000
VERSION     DANMGB010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.229"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            31..828
                     /locus_tag="PXG19_002445"
     CDS             31..828
                     /locus_tag="PXG19_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6067695.1"
                     /translation="MRYGDNTTFKHSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            825..1472
                     /locus_tag="PXG19_002446"
     CDS             825..1472
                     /locus_tag="PXG19_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067696.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(1550..2179)
                     /locus_tag="PXG19_002447"
     CDS             complement(1550..2179)
                     /locus_tag="PXG19_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL6067697.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(2251..2724)
                     /locus_tag="PXG19_002448"
     CDS             complement(2251..2724)
                     /locus_tag="PXG19_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL6067698.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT          859 a          498 c          511 g          921 t
ORIGIN      
        1 actagcaagt attagagagc ataaaaacta atgcgatatg gtgataatac aacctttaaa
       61 cattcctgtg tgattcaaaa acgggtgatt cacgcccttt taatgaggga attaattact
      121 cgttatgggc gtaaaaatat tggcttctta tggcttttta tcgaaccatt attgttaacg
      181 ttagtgatta ctgttgcttg gaaatatata aaagcagata agttttcaac tttaaatatt
      241 atcgctttta tgattacagg ctaccctatc gcaatgatgt ggagaaatgc ctctaataga
      301 gctcaaggag caatatcagc aaacttaagt ttgctttacc acagaaatgt gagagtgcta
      361 gatacgatat ttactcgagt tttattagaa gttactggcg catctatcgc ccaaattctc
      421 ttaatgacta tatttatcgc tattggttgg atagaaatgc ctaacgatat tttctatatg
      481 ctctgtgctt ggatattaat ggcatttttt gccttaggtt taggtttaat tatctgtact
      541 ttagcacatt atattgaacc ttttggtaag atttggggaa cattcagctt ctttctactt
      601 cctctttctg gtgcattctt ctttgtccat aatttaccgc taactgctca aaatattgcc
      661 ttatggtttc caatgattca tggtacagaa atgtttagac atggttattt tggtgaaacg
      721 gtaattacct atgagagcat tagttatctt atagtaagtg atattattct tctatttata
      781 ggactgcttt gtgtgagaag ttttagtaaa gggatagaac caagatgatt agtattagaa
      841 atgtaagtaa gcaatatcga actaataacg gttggaaaac catattaaaa gatataaatt
      901 ttgagctgaa aaaaggcgaa aaagtgggga ttttagggcg caatggtgca ggaaaatcaa
      961 ccttaatccg tttaatgagc ggagtagaac ctccaacaac aggtacgatt gaacgtcaaa
     1021 tgtcgatttc ttggccactg gcatttagtg gtgcattcca gggtagtttg accggaatgg
     1081 ataatcttcg tttcgtcagc cgaatttatg atgctgattt tgactatgta aaatctttca
     1141 ccgaagaatt ttcagaactc ggtgaatatt tatatgaacc ggtaaaaagc tattcttctg
     1201 gtatgaaggc ccgtttagcc tttgcattat cgctttctat tgaatttgat tgttacttaa
     1261 ttgatgaagt gattgcagta ggcgatgctc gattcgctgc caaatgtaag cacgagcttt
     1321 ttgaaaaacg gaaagaccgt tcattgattt tagtttctca tagcccagcc tcaattaaag
     1381 aatattgcga ttctgcaatg gttttagaag agggtatcat gcatactttt gattctatag
     1441 ataacgctta taatttctac aataaaacat aaaagaacaa gcggttatat ttcacaagtt
     1501 tttcgcaaaa aactctcaaa atataaccgc ttgttactaa aactgaaaat tagaaacctg
     1561 cgtctttttc taattgttca actaatgcct cagctaaacc taaagcatca gctaaattag
     1621 ctaagaaaac gatttctttg cgttctaaat ctctgcatac tgcacgggaa gctaagtaaa
     1681 cttgtgtagc caatgcttgg tcattaccta cttggcgggc aatctcttca actgtagccg
     1741 gagtgtccat ttcttgacga atccactcaa tgacttcagc ctcatctcca acttgggaaa
     1801 caatagctgc tttttcctct tcagtaatag caccatctga agcagcagcg gcaatcattg
     1861 cttgtaaaat cactttactt gccacatttt catctacatt ttcaaaatta ttttggctaa
     1921 gttctgaaac cgatgaattt tgcgcttgat acttttggta tgcttgataa gcaaggctac
     1981 cgatagcggc taaagagcct aattttgcta aacttgaacc gccattacgc ccaaataaca
     2041 ttgaaattaa accaatagcg acagcgccgc caccaatttt agcgatttga tcgtttttag
     2101 aattaccttt aattaatccg tttgtagcgg catcttttgc tgtatctaat acttgactta
     2161 aaatcttact gaaatccatt tttgttcctc ttggtaagta aatgaaattt actcattagt
     2221 ccttagattc aaacaagagt tcaattcaaa ttaaagataa tttccacaac agtgcttaaa
     2281 cttctttccg gagccacata cacaaggttg tttttgatga ggcaaaggta cggtaggatc
     2341 cacaaaaaac catcgctcat caatttgaac aaaaagagag gtttcgtggt gtccctgtat
     2401 cccctcatct gtatcaaaaa aggctttaaa ttcaacctga ctatgtattc tcgaaagaga
     2461 aggtaagtga tttagcacgg ataatcctac ccattttgta ttttcagccc actctttcat
     2521 tgcagtctga tcaagtaatt tctgctgact tggcactgtc gtttccacaa tatagggaat
     2581 attaaccaaa gtataagcac tgtaacggga gcgcattaat tgctctgccg ttgatgcaaa
     2641 tgtctgtttt aaatggaaag gttggcaaca ttcagcgtag cgtttgcctg tttggcaagg
     2701 acaagcggtg attttttcta acatttttac atttccgcat aaaaataaag atgtgaaaag
     2761 tttacgctat aaataaagaa aaataaatt
//
LOCUS       DANMGB010000229         2672 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.230, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000229 DANMGB010000000
VERSION     DANMGB010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.230"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(10..>2672)
                     /locus_tag="PXG19_002449"
     CDS             complement(10..>2672)
                     /locus_tag="PXG19_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6067699.1"
                     /translation="VANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYDKVANKE
                     VLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQGTSQAC
                     IRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTGSITAQE
                     STKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVANGSQIHL
                     NTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEISTNGSAHS
                     AQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKITQKGPSE
                     TADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIA
                     SELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKTASDIVT
                     IKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYHLLKEGN
                     VYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTGDIEHSE
                     KGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAVLGVTTA
                     LDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQVTLGMIL
                     SQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQANTVKL
                     DRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDLLALQAG
                     LSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAGISANYR
                     NINAGIQAGFLTGNTLNKQRYISFKVTYEW"
BASE COUNT          666 a          547 c          529 g          930 t
ORIGIN      
        1 tctcaatatt taccattcat atgtaacttt gaacgagata taacgctgtt tatttagcgt
       61 attccccgtt aagaaacctg cctgaattcc tgcgtttata ttgcgataat tagcggatat
      121 acctgcttct tgtttaaaat aacgccccat ttgctgctct atttgtaaat tattgaaacg
      181 tgttcttaat ttcccatggc ttgcatcaac aaaatagcta cctatttccg gttttatttg
      241 caggccattt agttcaagcg ttttattaat tgacagacca gcttgaagag cgagaagatc
      301 aacagcgttt gtttcgattt ttgcatctac aagttgatta cctgctgaag ataaatgatg
      361 ataacgggcg ctaaatgatg ggattatatt cacgtttgca gattcccatg ctttaccgat
      421 actaagccct gttacaaata ctgaacgatc taattttact gtatttgctt gataagttaa
      481 gcgattgctt gctttcccaa aaccggtatc tatcgcaaca aaaacaccat tttgccatgt
      541 tttcttcgca tacattgata gcattgttaa gcgaccttta ccgctataat aatggtcaaa
      601 attatttctc gcttttgatt gagataatat cataccaagt gtgacctgat tatctaaggc
      661 tttctctaat cctagatgga taacgttcgc atcttggtta aatccatatc cggcagagcg
      721 atgctctgtc gtttgataat ctgttttaga ccatactttc caattttggg tcccttccga
      781 atgaattaca tgatctaatg ctgtagttac acctaataca gcattagttt gcgcagttaa
      841 ctcggatgcg atcaaatgtg catttccatt gtatttaggt aatggctcag cggtttcacc
      901 cgatcctttt tctgaatgct caatgtctcc tgtgtattca ggtaacggat cagcagtttc
      961 acccggccct ttttccgaat gctcaatgtc tcctgtgtat tcaggtaacg gatcagcagt
     1021 ttcacccggc cctttttcag aatactcaat atccccggtg tattcaggta atgggtcagc
     1081 ggtttcactt ggcccttttt gagtaatttt aggttcttcc tctttctctg gattgaggta
     1141 atacacattc ccttctttga gtaaatggta gcgatattcg cctgagtgca cttcatttgc
     1201 taaattaaga gaaaagtctt cttcatttgt tgtttcaaat aatttaatct tttgggctga
     1261 atgggcgcta ccatttgtgc taatttctat cgaaaattga ccgcttgcgg tgtctttaat
     1321 tgtgactata tcgctcgctg ttttcgtcag atcagcgaca aatttaaata tgccgttccc
     1381 tgtgagggta ttagcggtaa gcgtattctg tttttgggtc ccttccgaat gaattacatg
     1441 atctaatact gtagttacac ctaatacagc attagtttgc gcagttaact cggatgcgat
     1501 caaatgtgca tttccattgt atttaggtaa tggctcagcg gtttcacccg atcctttttc
     1561 tgaatgctca atgtcgcctg tgtattcagg taacggatca gcagtttcac ccggcccttt
     1621 ttcagaatgc tcaatatccc cggtgtattc aggtaatggg tcagcggttt cacttggccc
     1681 tttttgagta attttaggtt cttcctcttt ctctggattg aggtaataca cattcccttc
     1741 tttgagtaaa tggtagcgat attcgcctga gcgcacttca tttgctaaat taagagaaaa
     1801 gtcttcttca tttgttgttt caaataattt aatcttttgg gctgaatggg cgctaccatt
     1861 tgtgctaatt tctatcgaaa attgaccgct tgcggtgtct ttaattgtga ctatatcgct
     1921 cgctgttttc gtcagatcag cgacaaattt aaagatgccg ttccctgtga gggtattagc
     1981 ggtaagcgta ttctgttttg ttgcagttgg agtgtttaaa tggatttggc taccatttgc
     2041 gacattcaag acatctacaa cagtgttggt taaggttgtc cataccccag aaagattaac
     2101 ggttgaacca ttggcgccat taaatattcc tgttgtactc aagccggtta aattagcaat
     2161 acttccatca ttaagttgaa ccttagtgga ctcctgagct gtaattgagc cagttaagtc
     2221 tgctttactg cctaacgaaa atgttgaatt gtcagctaaa gagacattgc cagccacttt
     2281 ggttctctcc cagctgttta aatcagtctc tgataaagta gcgttaatat tacaggttgc
     2341 tacgcctgtg cggtcagagc gaatacatgc ttgtgaggta ccttgggtaa aaccaatttg
     2401 agcggtagca ttatctgtta aattaaaatt accgttaata ttggcaacat tacggctgat
     2461 ttcaagcttg ccattgtctt tagctgcaaa gattgttgcg ttgaacgatc ggttgatcca
     2521 gtcgccttca atcaggactt ctttattcgc tactttatca taggcatgag gtgttggacg
     2581 gcccgataaa atgatttcgc ttgtaccttc tgcagaaagc gtaccgttga ggttcgttcc
     2641 cccagtgata agcaatttgc cgtttgctac tt
//
LOCUS       DANMGB010000230         2632 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.231, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000230 DANMGB010000000
VERSION     DANMGB010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.231"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(61..237)
                     /locus_tag="PXG19_002450"
     CDS             complement(61..237)
                     /locus_tag="PXG19_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067700.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            complement(491..1192)
                     /locus_tag="PXG19_002451"
     CDS             complement(491..1192)
                     /locus_tag="PXG19_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067701.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            1737..1952
                     /locus_tag="PXG19_002452"
     CDS             1737..1952
                     /locus_tag="PXG19_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067702.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            complement(2004..2222)
                     /locus_tag="PXG19_002453"
                     /pseudo
     CDS             complement(2004..2222)
                     /locus_tag="PXG19_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
     gene            2414..2602
                     /locus_tag="PXG19_002454"
     CDS             2414..2602
                     /locus_tag="PXG19_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067703.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDRLNIINANEEETE
                     TLIEWRNAFLQDVSVFIA"
BASE COUNT          723 a          497 c          587 g          825 t
ORIGIN      
        1 gttagctaca agcggttggt tgtcaagtgt tcatttgttc aatgaacagt tcatcagtgg
       61 ttaatcttca atatcaatat attccgctaa ctcacttcga gcttttaaat aagccttgcg
      121 aagcccgtgg aatttttcat cttggacttc ttcaaagtca ctataactga cgaaagcgta
      181 ttcaaaacct tcgttttcaa ttttagtttg aagatattct ttgtcttctt ctgtcatttc
      241 gtttctccta ttgagagtgg ataaaaataa acactgcacg ggcagggtcg gggaagcatt
      301 atcgctgtgc gatagtgcat ggtttgccat cgcagtcgtt gtgtaactct aagtagtcgg
      361 cagcaactgc aaaggcggtt aaaaagagta tgatttttgc gtatttcatc gcctaatcct
      421 tgaattttgg gtgcaggaaa ccgccgcttg atgtttcaca agcggtcgga ttgtgtgatt
      481 tttttgcaaa ttaaattcgg actaagccgc ctaagccttt cggctggtat tgccttaagg
      541 tagttagggc tttgtggtag tgagcttctt caaacggatc gacctcgaag tcggctaaca
      601 tcggttcaag tatccgtttc attacgccaa gcgtggtttg atactcggtg gcgtgagtgt
      661 aggcggttgc cccaaacggc gaaccgatag cacgcaacgg tttttctaac gtagcaagta
      721 cttcaaggct gttgtagagg gcgtaccaca ttgaagcgaa acgtagccat tcttttttgg
      781 ttagctccat tgggatttta ggttcgacaa tcggggcgat ttgtgaacgt tccgctttgc
      841 ccttgaacca gtaatcgtgc agggcttggt agcactcttt tttgtatttg atgagcgttt
      901 ctctgatttc gggtttgcag cgattgatgt caatgccgaa gagccagccg ttgaggtatt
      961 caattgggag gcagatcatt tgttgatcgc caccgtttgt aggtattctt atgataagaa
     1021 taccctgcga aaggatttca tctcgtttga tccgttcgta ttgagcgtgc caagtcaagc
     1081 cgatattttc gcagatcggt ttcattgcgg tgtaatgtgt gccgttttgc tcgaatgtga
     1141 ttaaggcttg gttgttgaaa gaaatggttt gagtagaaat ttgagttgac atagtcgtaa
     1201 tccttagagt ctatttgttt aaaacaagcc actttcgaca gtggcgtcgg gaggttcgaa
     1261 aacccactct aaggtaaggg ctggacgtat ttcctttcgg tcttgtatta gtcgccctcc
     1321 cgacatagtc aggattacgg atataaaaaa atcgcctagt ggcgattagt gaactatccg
     1381 ccttagagta tgaggtttcg acaccttggg cggaatagta agttaaagtt tggcggttgt
     1441 caaataaaat tattttaata aatactaaaa aatagcttgc gttttatttg gtatgtatta
     1501 aaataatctt gttttcggaa agggtctgaa aatgaagaag ccgcccttga agagagcggc
     1561 aaacatcagg aactggatta tgtatcttaa gttgttaatc ctagtgatct taatcttaat
     1621 aagcacgcca gcttattaga ttagaaagct aaaagtccta gcagagaacg ccatctctgc
     1681 taggcagttc ctaaataata taacgttccg tattaaaaat caacaaggaa ttgacaatgc
     1741 aaacagagaa acgaggtcgt ggtcgcccta aatcaggttt aacgcttcaa gaattacaag
     1801 caaaaagcga tgcaaagcgt ggtgtgcgat tgaagtcatt caagttccac gaagatttta
     1861 ttgctcaact tgaacagctt gcagaacaac acggcatttc gcaaacacag gtaatcgttc
     1921 aagcggttga gcagttttca aaaggggcgt aagcccctat aaacctaccc ttcactgttc
     1981 gatgttttta attagttgtt gcatttaatt tggtgtaatt ccaccaaatt aaaatttgga
     2041 ttattcagct cttcccaaac ttgaagaaat tcaatggtat ttttattttg aagccagttt
     2101 ttaatgagct ggtcgctgtc tccaaaagct ttgcacatat cagttaggct gatgtaatcc
     2161 tcaccatcac gagcggttac tttgacctcc acgccttgta caatcattac gctatttgcc
     2221 atttcgtttc tccgttttta ggtacaaaaa aagccgttgg tggacggctt gaaagtgcgg
     2281 ttatcttaat ccgaagtttg gcggtgtcaa gcctcaatat ctatttttgc gatctgcatc
     2341 gaaaaaataa atttttgttc tgacagtaaa acgctttcgt agtaatctca taaaaaaata
     2401 taaggagaac actatgaaag agcttttcaa acaatggcta atcaatcagg actcgccatt
     2461 cattaatagc tgtggcgttg agtgtatttt gtcaaaagtt gatgaccggc taaacataat
     2521 caacgccaac gaagaagaaa ccgaaactct tatagagtgg cggaatgctt ttctgcaaga
     2581 tgtttcggtt tttatagctt aggtactata aatcgtcttc tttaacccaa at
//
LOCUS       DANMGB010000231         2617 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.232, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000231 DANMGB010000000
VERSION     DANMGB010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.232"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(116..191)
                     /locus_tag="PXG19_002455"
     tRNA            complement(116..191)
                     /locus_tag="PXG19_002455"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXG19_002456"
     tRNA            complement(195..269)
                     /locus_tag="PXG19_002456"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXG19_002457"
     tRNA            complement(313..397)
                     /locus_tag="PXG19_002457"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXG19_002458"
     tRNA            complement(432..507)
                     /locus_tag="PXG19_002458"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXG19_002459"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXG19_002459"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL6067704.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1857..2396
                     /locus_tag="PXG19_002460"
     CDS             1857..2396
                     /locus_tag="PXG19_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL6067705.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          827 a          535 c          481 g          774 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagctc cgatttattc acatttgacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccgtcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgccgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaacg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgccaacctc attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatatttt gcaaataatt gggctttttc gaccgcttgt
     1741 aataccttaa aatccgttga ataccactca acggattttt tatttaaatc aatgcttatt
     1801 caactatttt ttggtaagct aacgactttg agagtgattg atattaggca tatacaatga
     1861 acaaaaaatt tctacttcct ttaattctct ttttggcgtt atctgtggca tttttggttc
     1921 aactcgctcg caactcgcaa ggcgatgatc cgaaaaaatt agaatcagcc ttaattggca
     1981 aaacagttcc gagctttaat ttagaatcgg tattagatga aaaacagaca atcgaccaaa
     2041 atatcgtcaa aaccggcaaa cctcgcctgc ttaacgtgtg ggcaacttgg tgtccgactt
     2101 gttatgccga acacgaatac ttaaccattt tggcaaaaca aggggtggaa attgtcggta
     2161 ttgattataa agacgaacgc ccaaaagcga ttaaattctt agccaattac ggcaaccctt
     2221 ataaagcgat tatttttgac ccgaaaggct cactcggttt agatttaggt gtttatggtg
     2281 cacccgaaac ctttattatt gacggcaacg gcgtgattca ataccgccac gccggcgatg
     2341 taaacgacca agtgtggaac caagtgctta aaccgattta tgatggatta aagtaaatgt
     2401 ttgtatttcc tgctgacatt aagaaatcta taaaaagcaa ttatcaaaga gaatataact
     2461 ttatttttat aatagttggt ttatcaacta ttataggaat aattctaact attttatcct
     2521 catttttatt gctaaactat ttagttagca ttgatgcaag aaatttattc attaactcat
     2581 taaacagtaa cttctcaacc atatttattc ctatagc
//
LOCUS       DANMGB010000232         2607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.233, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000232 DANMGB010000000
VERSION     DANMGB010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.233"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>2607
                     /locus_tag="PXG19_002461"
     CDS             <1..>2607
                     /locus_tag="PXG19_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL6067706.1"
                     /translation="DFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVV
                     ASNIKVKVKEGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESL
                     VKKIQYISSLFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNND
                     INMVLAAAGTGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREA
                     NLDLENSPSISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDN
                     LAKFIQLAYQPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVE
                     YEYEPRYVSKRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRK
                     RELHAEHNTTLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFK
                     ENKNRYLKCLQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANE
                     IDFDDMILLATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVG
                     DDWQSIYRFSGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQ
                     KNVVTHTKVADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYR
                     YLLEDAKSVIKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLP
                     MLDSFPHSEERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQER
                     YRTIFKCNECSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQF
                     WGCSGYGIKGDQ"
BASE COUNT          894 a          474 c          512 g          727 t
ORIGIN      
        1 tgactttcca gctatccaga agtctttctt tggtactaaa ttatttttta aagacgatag
       61 cacagaagtt gttttatcaa aacttgcgaa aaaacaaact gatagtctat tacttgaaat
      121 cgaaaaagta gttgcatcta atattaaagt gaaagtaaaa gagggttttc aacactttgc
      181 aaatttagcc gaaaatcaat atctcagaga ttccgacatt cctacattaa atgatcgtgt
      241 aagattgtca gtgctttcct atggggataa caaagaacat tttcaaaaat actttgatga
      301 aagtttggtt aagaaaattc aatatatctc ttcacttttt cctgtaaatg ccataaatgc
      361 tcaaacaatt cgaagagaat acgagcaaca tgttttaaat catcgcaagc atttctttga
      421 tgtcattgaa tctaatccgc ttactgagca acaaagattg tcagtcattc ggaacaacga
      481 catcaatatg gttcttgctg ccgcggggac aggaaaaacg tctgtaatgg tcgcaaaagc
      541 attggactta attgattctg gtgcttgtaa aagcgaagat attttgattc ttgcatacaa
      601 ccgcgatgca gcaaccgaac tatccgaacg cttacaagaa cgtgcacgag aagccaattt
      661 agatctggaa aatagcccta gcatctcgac tttccatgcg cttggccgaa gaattattaa
      721 agaatgtgga aaatcagtcc acttgtcaaa atttgccgaa gatccgatga aattagatag
      781 atggttcaac aaatggctag aggactacat caaagaagat cctgataatc ttgcaaaatt
      841 cattcaactt gcataccaac ctatcgatcc attccaattc aaaacgaaag acgaatacga
      901 tagatatgta aatgacaatg actatcgaac cttacaaggc gaacgcgttc gtggttatca
      961 agagttattg atcgcgaact ggctttttag ccacagcgta gaatatgagt atgaaccaag
     1021 gtatgtatca aaacgccgta tcgagattgg ttttgactac aaacccgatt tctctttggg
     1081 tgatggtgtt taccttgaac atttcggcat tgaccgacaa ggtagaactc gcgcagatat
     1141 taacgcgcag gaatataatg ccaatatcca aagaaaacgt gagttacacg ccgaacataa
     1201 tacaacatta ctggagacat accactacaa ctgggtggaa aatacgttat ataaacgact
     1261 agagcaattg atgaatgaac agttcattcc tctgaagcca aaatcacaac aagagatttt
     1321 agatgcactc aatgaatcag gaatcttcaa agaaaacaaa aatcgctatt tgaagtgcct
     1381 tcaagctatt cgtacagagc gattagacta tcaacaaatc ttaaaacgtc taaccgatgc
     1441 gaaaattgtc tatgctaaag aatatgcgac attgctcatg cgtattcatg atgcctacgt
     1501 taaagaacta cgtagcgcaa atgaaatcga ctttgacgat atgattttgt tggctactca
     1561 actggtgaaa acaggtgagt ttaaacctaa atggaaacat attttagtcg atgaatttca
     1621 agatatttct atggctcgat tggagttatt gaaagaaatt tatactaaag ggcctcgacc
     1681 gatttggact gttgttggag atgactggca atcaatctat cgtttctctg gcggtaaact
     1741 agaagttact acgcgattta atgatatggt cggctcacac acgctaagta aactagaaaa
     1801 aacctaccgc tataacaata gtattgctga cacagcaggt caattcatta tgcaaaatcc
     1861 tgagcagtat cagaaaaatg ttgtaacgca tacaaaggtc gctgattctt gtgttcattt
     1921 gtatgactct catgtcgtaa aggatgaaaa atcagaagcc aatatcagtt taaaagcctc
     1981 agcaatatta aaactgatac gtcaaaaagc acctgaagcc actgtcgcaa ttttggctag
     2041 ataccgttac cttttagaag atgcaaaaag tgtaatcaaa gataagaatg ttaaattttg
     2101 gacgttccac ggctcaaaag ggttggaagc agattactgc attttacttg gtttcttcca
     2161 aggaaaagtc ggatttccca accaaaataa agaagaagcc gttgtagaag cattgcttcc
     2221 tatgctagac agttttccac actcagaaga acgtaggtta ttttatgtgg cattaacgcg
     2281 tgcgaaaaaa gaaagttatt tgatcgcaga tgcgaacgcg ccatcagaat ttatcaatga
     2341 attattatca ccgaaataca agatagatat tgtgtcaaaa cgattccaag aacgttatcg
     2401 gacaatcttt aaatgtaatg aatgtagcac tggctatttc gtgatgaaac aaggtaaatt
     2461 tggtcagttc tattcttgta catcagggga agtatgccgc tcttcgccac ggatttgtga
     2521 aaaatgtggc cgtcctatga agctgcgaga aggtaaattt ggtcagtttt ggggatgctc
     2581 aggatatgga atcaaaggcg atcaatg
//
LOCUS       DANMGB010000233         2586 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.234, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000233 DANMGB010000000
VERSION     DANMGB010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.234"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..410)
                     /locus_tag="PXG19_002462"
     CDS             complement(<1..410)
                     /locus_tag="PXG19_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6067707.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQRDAWTAA"
     gene            complement(514..978)
                     /locus_tag="PXG19_002463"
     CDS             complement(514..978)
                     /locus_tag="PXG19_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL6067708.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            1187..1450
                     /locus_tag="PXG19_002464"
     CDS             1187..1450
                     /locus_tag="PXG19_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL6067709.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(1534..2559)
                     /locus_tag="PXG19_002465"
     CDS             complement(1534..2559)
                     /locus_tag="PXG19_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6067710.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT          711 a          585 c          498 g          792 t
ORIGIN      
        1 gcagcagtcc aagcatctcg ttgctttgat tgttcttcgg gagctacatt cgggggcaaa
       61 atatagcttt gacgaacttt agctgaaaaa gcaataactt ctaaaccgtg atcaagcatt
      121 ccaccgatat gtgaatgatg gtgtgattca gaagctggta atagttgaac catctcagcg
      181 taacgttcta ttggctgctg ataaagtacc tcaaacattt gacggttcat tgatacctgt
      241 tgccaaagta gcccaagata tttttgtcgt aattctgtat taagtaattg agaggctttt
      301 tccgggtata accacccttc attatcttgc tcaatagaaa aaatagtatc ggatttgacc
      361 gcactttgag atttattttt accaaaaaat tttttgaaca ttgaacgcat tggaagagac
      421 cgaaaatatg aatgctgtat tgaatgaaag ccgtttagcc ctttgccctt ttgggtaaga
      481 cctttcccct tggaaaggtt actcttatcc cccttagggg attacaggat cgtacagttc
      541 cgccggtaaa ttttcacact ggtctaaatt gaacagattg tgcttagcaa tgaaaaagtg
      601 ttgttccatt tccggatttc cttcctcgtc atacacaata tttccctcct catcgagttt
      661 ttctctctca ttaggacggt agttcatcac aacagtagct ttttcccctt tacggatata
      721 tccgccgagt tcattggctt ttttcgccgt aatccactta cactgtttgt agccgtgttc
      781 agcggtagca atccaaagca ataacgtatt gataccggaa tacagacggt tagaaaccgc
      841 attgcgaggt aatgccatat tgcattccgg atggctccac ggttttaacc acggagctgt
      901 accttgttcc aatgcagcaa tgattctatc agtaatatgt tggtataaat caaatttagg
      961 ttgttgagtg ttcatcatgt gtttctccaa agtttgggta aaaaaatggg gaaacacggt
     1021 taccctatgg ggaacttgtt tccccgatgg gtagtttata aaatttcaat ggccacaatt
     1081 tttctagaat catcaaagcc aacagaactg cctatggcgt agtaattacg aatagtctgt
     1141 tcatcggcat tgattagcag atacctatcg aggaagagag attgggatga gaccggtaac
     1201 gagaaataat cgtggaacca gttttgaccc tcgtcacaat aaatacatca atacattggc
     1261 aaccgcatta ttggcacgtt ggcatattga gcaattctct gagcgtaata tcccagtcaa
     1321 tgatgaaaat ctctatatgg ctcacaatat tggcttagat ggtttccatc gagcgttatt
     1381 agggcaatct actcgtaaag acattgagaa tatgcgtaag aatgggatga aaccttggat
     1441 gtccatttag ctctgttttc aaatgaccta atccagtttg ttccggagag agtaccgaaa
     1501 ttttgcactc tttcatccgt ggtgtatcaa acttcaacgt gctaaatgag acattaaata
     1561 tacatcaaca taatctaccg cactcatcgt taagaaaccg ggattcccat cagaatgagg
     1621 aatatcgtta aagcccgata aggagacggt taaacaaaat ggtgttaaat tacttgcttg
     1681 atttcgtttc acagctctgc tttctccact cgctcgccca ttcgaaatac gaccgtctgc
     1741 aaacacaaag gtaatgctcg ttacctcaga acgaacgcaa gatagcgtcc aatctccggt
     1801 tgatgtaccg gatacaatcg ccccctcaac atcaggtaaa tcaatgccat tggcaattaa
     1861 attttctcgc ccgattaata ctttaaacgg aaacggatct gtcacagcac cttgaatagg
     1921 tacacggcct aacaatgccg tcatcgcagt agaacccatt aaagtcgaat tttcgggaat
     1981 agtgtaataa ggtgtacgct ttatttgctg tatctgagta ttaccagtca tattttctgt
     2041 cccagcatta ttatttaatg ctgtcccagt atttgaactt tccccctctg ctttaaaagg
     2101 gcttggaaag ccggtttttg ttttcccgga ataattgcct gtaaccggtt taccttgttc
     2161 atcggttacc accatatcat caggatcgac ccagcgaatg ccattgttat ctacattccc
     2221 tgtttgtcct gctgattcag tcccaaagcc agaagaagcc cctcctacag ggattgcctc
     2281 tgcttctttc tgctgctgat taccactttg aacccgacct ttcagttctt cgatttggcg
     2341 attaaatcca tcccaagcag cagccaaacg gctttctaca cgactttcta cttcacccgc
     2401 aatacgagaa tccacttcgg cttctcttgc ttgtaagcgt aatacctctt gctcaaagcg
     2461 atcaccacgc tcatttgctt tacgagcttc ttcacgagta tcttttaatg ctcctaccaa
     2521 cgtttttaat gtatcgtgag gcgtatctcc tgcagtaata cctaatgtat tcgcctcctc
     2581 atcact
//
LOCUS       DANMGB010000234         2574 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.235, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000234 DANMGB010000000
VERSION     DANMGB010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.235"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            94..384
                     /locus_tag="PXG19_002466"
     CDS             94..384
                     /locus_tag="PXG19_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL6067711.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            453..2093
                     /gene="groL"
                     /locus_tag="PXG19_002467"
     CDS             453..2093
                     /gene="groL"
                     /locus_tag="PXG19_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL6067712.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2218..2544)
                     /locus_tag="PXG19_002468"
     CDS             complement(2218..2544)
                     /locus_tag="PXG19_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL6067713.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT          812 a          422 c          618 g          722 t
ORIGIN      
        1 cacttgaaac tctaaaatct gcctttatat tgttaggcgt tacgcatttt gcgtgaagtt
       61 ttatttattc atttttaaga aaaggaacat attatggcac ttcgtccatt acacgataaa
      121 gttattttaa aacgtgaaga agttgaaaca aaatcggcag gcggtattgt tttaaccggt
      181 tcggcagcaa caaaatcaac ccgtggcaaa gtaattgcag taggaacagg tcgcatttta
      241 gacaatggtt ctgttcagcc tttagcagtt aaagtgggcg atgtagtgat ttttaacgaa
      301 ggctacggcg taaaaaccga gaaaattgac ggcgaagaag tgctaatttt agcagagcac
      361 gatattttgg cgattgtaga ataatttcgt tctgcacaag cggttaaaaa agcaaaattt
      421 tttacatatt tcaaatacaa aggatttaga aaatggcagc aaaagacgtg aaatttggta
      481 acgatgcacg cgtaaaaatg ttaaaaggcg tgaatatttt agccgatgcg gtaaaagtaa
      541 ctttaggtcc gaaaggtcgt aatgtggtgt tagatcgtgc ttatggtgca ccaacgatta
      601 caaaagacgg tgtgtcggtt gcccgtgaaa tcgaattaga agataaattt gaaaatatgg
      661 gggctcaaat ggtgaaagag gttgcctcta aagccaatga tgccgccggt gacggtacaa
      721 ctaccgcaac tgtattagct caagcgattg taaacgaggg cttaaaagca gtggctgcgg
      781 gtatgaaccc aatggattta aaacgtggta tcgataaagc ggttgcagca gtggttgaag
      841 agttaaaagc gatttcaaaa ccgtgcgaaa cctcaaaaga aattgagcaa gtagggacga
      901 tttctgcaaa ctcagattca acagtcggtc aattaattgc tcaagcaatg gaaaaagtgg
      961 gcaaagaggg cgtgattact gttgaagacg gtacaggttt agaagatgca ttagacgtgg
     1021 ttgagggtat gcaatttgac cgtggttact tatcgccata ctttatcaat aaaccggaag
     1081 ccggtacggt tgagttagaa aacccatata ttcttttagt ggataaaaaa gtgtctaaca
     1141 ttcgtgaatt attaccggtg ttagaaggtg ttgcaaaagc aggtaaaccg ttattaatta
     1201 ttgccgaaga tattgaaggc gaggcgttag ctaccttagt ggtgaacact atgcgtggta
     1261 tcgtgaaagt ggcggcagtg aaagcacctg gctttggtga tcgccgtaaa gcaatgttac
     1321 aagatattgc gatcttaact gcaggtactg tgatttctga agagatcggt atggagcttg
     1381 aaaaagcaac ccttgaagag cttggtcaag caaaacgtgt ggttatcagc aaagataaca
     1441 ccacaattat tgacggtatt ggtgatgaaa ctcaaatcaa aggtcgtgta gcacaaatcc
     1501 gccaacaaat cgaagattca acttcagatt acgacaaaga aaaactacaa gagcgtgtag
     1561 caaaattagc cggtggtgtt gcggtaatta aagtaggtgc ggcaactgaa gtggctatga
     1621 aagagaaaaa agaccgtgtt gatgatgctc ttcacgcaac ccgtgctgcg gtggaagaag
     1681 gtattgtacc ggggggcgga gttgctttag tgcgtgcagc caacaaagtg gctgatacac
     1741 taaaaggcga taacgaagag caaaatgtag gtatcaaact tgccttgcgt gcaatggagg
     1801 ctccattacg ccaaatcgtt gccaatgcag gtgaagaagc ctcagttgta gcccgcaacg
     1861 tgaaagaagg ttcaggcaac tacggctata acgcaggtac agagcagtac ggcgatatgc
     1921 ttgaaatggg aattttagac ccaactaaag tgactcgttc agcacttcaa ttcgcggctt
     1981 ctattgcagg tttaatgatc actacagaat gtatgattac cgatctgcca aaagaagaga
     2041 aattagatcc tgccgcaatg ggcggtatgg ggggaatggg cggaatgatg taattgccca
     2101 ttgagtgaac aaaagctact gaaattaatt cagtagcttt tttgttggta acaagtggtt
     2161 aaatttatgc tattttttgc aaataaaaaa ccaagcaagt aagcttggtt ttagcgttta
     2221 ttgatgtttt tgtttaaggc tgtttagtgc tgttaaacct ttctcacaac ttttttgctg
     2281 taattcagaa tccattttta ggatttgttg ctttgttaaa gaaagtttat ttttcatttt
     2341 tagcacttga gtatgagtac caggctgtct ttctgcatca gagaccaatt tatttgccgt
     2401 gttaaacatt ttctcacatt cagttggcaa atttttactt aaagtaggtt ttgcaactgt
     2461 aagtgatgag gttttaacac ttgctatagc attactggaa accaatatgg tacaaagtgt
     2521 tattcctaaa attcttttta gcatgcgttc tccacacatt aagtgtttaa aagt
//
LOCUS       DANMGB010000235         2549 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.236, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000235 DANMGB010000000
VERSION     DANMGB010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.236"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..411)
                     /locus_tag="PXG19_002469"
     CDS             complement(<1..411)
                     /locus_tag="PXG19_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL6067714.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYL"
     gene            complement(432..1703)
                     /locus_tag="PXG19_002470"
     CDS             complement(432..1703)
                     /locus_tag="PXG19_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL6067715.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(1707..2515)
                     /locus_tag="PXG19_002471"
                     /pseudo
     CDS             complement(1707..2515)
                     /locus_tag="PXG19_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT          874 a          502 c          364 g          809 t
ORIGIN      
        1 caaataccaa ttttttagtc catatttttc ttgccaataa tctaatgact ccattacttg
       61 ctgaatcact tcactagaaa caataatacg agctccaaaa atatcgttga gaatgctatt
      121 tactggataa ccttcactac gctgtttaaa acgctcgatt ttatctaaaa tcgattctga
      181 ggtttttact cggtaaaaat aagaaattcc ctctaaatct gcacgatata aataatcatt
      241 aatagattcg tgtaaattaa gacgataagc taaaatatgt ggcgtaggca ctttggcaaa
      301 agtatgctta agattcactt tttcaatctt acctgtttca aagtagtctt tcgaaaaagc
      361 taagtgcaac ttgttgattt catcaatgag tttttctatt ttctcaagca tgctattcac
      421 tctctaattt attatcttgc cccaaatcca gttagcattg ttttcaatgt tttaaaaata
      481 attaaaatat caagccataa agaaaaatgc ttaatatagt agaagtcatg ttctactttt
      541 acttttgtat catcaacatc tgccgcataa ccttggacga cctgagccca accggaaata
      601 cccggtttaa cgatatggcg ataattatag aatggaattt cctcttcaaa tttatctaca
      661 aaggctgtct gttctgggcg aggaccaatt aagctcatat caccttttaa tacattaaaa
      721 aactgaggta gctcatcaat acgagtttta cggataaatt tcccaatacg agttaccctc
      781 atatccgcac tcgaagcaaa ctgtgcatca tctttttcgg agtctttaca catactacga
      841 aatttataaa tattaaactc ctttccacct tgcccaacgc gtttttgaat aaacattgct
      901 ccaccttcac tttctaagcg aatagcaata gcggtgattg tcataatagg taaagtaatg
      961 ggaaacgtag caacaatcaa tgcaatatca atgatacgct tcactaatga gtaaattgga
     1021 gaaggaagta atgaacctaa gtcattttca tacatatggc gaattttgac acgcccggtt
     1081 aaagattcct caagctggcg aacgttatat acaggaatac cattcaatgt acatttcgct
     1141 aaaaatttat gccattctgc ggacaaatca ggatagtgta aatctaccgc aatagagtta
     1201 attctctttt cccccaatat tggttcactt aattgaatcc actctacatt ctgaattcgg
     1261 ttcaaattga tagctcttcc gaatggaacc aaagcgattt tagggataat ccaacttctt
     1321 gaaagaaaat aaccaataaa acaaaataga attgtgagta taaagctcgt acctagcaat
     1381 gtattagaat aatcaaatct aaatattgtt aacacgatta ataaaaccgc ataccaagaa
     1441 ataacggtgg aaaaaacaaa acttgctgac ttattacctg gatatttcat taacactctt
     1501 aagctgatag ctatcattac aaaggcaaga gaagtcgcta taatcgtatt agaacgagtt
     1561 tcaatagaat taaatttctc tccccaaaaa tagatagcgg gtaagacact tgagaacata
     1621 acgcccaaaa tactttgaac agctgtacta aaaaagatac gttcatacca acgagagtgt
     1681 cttttctttt gctgaatgct cataatttat ccttttctta atttcttata aagtcttcct
     1741 aaaagagatc taggcaataa ccgtggtaag gctctaagta taaaaaacat gcttgatgag
     1801 attattgatt gtaatcccaa ctcttttttc aattttgcta attggtactc actcttaatg
     1861 taattccacc ctttacgccg agcgtacatt gcagaacctg aacgaacatt taccagtaca
     1921 tctggtaaat tatacacctc atatttctgt gtaataactc gtaaccataa attgtaatct
     1981 tccatataaa gatgatgctg atagcctcca acatgctcga tcacagattt tttataggct
     2041 actgccatat ggttaaaagg atttcttagt aatgctgaaa tacgaatttc atcatcatta
     2101 atgggcactt gttttatacc cagagaatta gacattgttt cgtcaaattc ttcaacttgt
     2161 ccccccaata aaaccacatc aggattttta ctaataaaat caatttgctt ttcaaatcga
     2221 gatggtaagc aaatatcatc agtatccatt ctaaacaccc actcattaga gcagtgtttt
     2281 aagccttcat ttaaggccgg cctaaaccca cattttgtgg taaactaaca acaacaagcg
     2341 gtaatttttc agtaaaatgt tgcacaattc gctctaaatc tccaggaatt ataccatcaa
     2401 aaaccacaac aatttcactt gctggtaaag tttgggatac taaagaatct aaacacatct
     2461 ctaaataagc tggtttttct ttataataca aagatattaa tatcgaaaac ttcacaacta
     2521 cttttcccac tttttcaact tatggacta
//
LOCUS       DANMGB010000236         2500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.237, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000236 DANMGB010000000
VERSION     DANMGB010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.237"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            32..751
                     /locus_tag="PXG19_002472"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXG19_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXG19_002473"
     CDS             811..1260
                     /locus_tag="PXG19_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL6067716.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            1361..1882
                     /locus_tag="PXG19_002474"
     CDS             1361..1882
                     /locus_tag="PXG19_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL6067717.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            1914..>2500
                     /locus_tag="PXG19_002475"
     CDS             1914..>2500
                     /locus_tag="PXG19_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067718.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIYTFSSQLDNCVKEQCQTLLENCDGNWSKFTEA
                     NNFKTKKLDFSWRQEDNLLKIELEIESPKQKGLIYT"
BASE COUNT          868 a          407 c          494 g          731 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa aaatcaatat ttaatagttt acaaatgatg
     1321 cttaaattct aagataccct ctatcaatga gggtattttt atgtataaag ccatcacatt
     1381 aattgaaata ctaaccacta tcactattat ggtgatcgct gtttatttta tctcgccggt
     1441 tatttttaca ctgcaagatc gaattgcact tcatagtgaa attgaaaata tccaatcttt
     1501 tattcagcaa atccaaacta aagcacgtta taccaaacgt aattatacct taaccctttc
     1561 tcagcggaat aatcagtggt gtatgattgc ggtaattaag ccaatcaata ctagcaaaca
     1621 aattatttgt gattgtttga ataaacattt ttgtgattta ggaaaagaat atcatcttta
     1681 tacgccgact catcagcaga ttgtattaaa aaataaaagt ttatatccga aatcctttat
     1741 taatgttgat ggggtaagtg gtcaattaga atcaaaatgt attaagctca gtttaaataa
     1801 agaaaatgaa attttgcaat ttgaacaatt aggacgggtt tatgtggcag caaaaaataa
     1861 acgtagcacc tgcaaagatt agtttatctg cttttagcct aattgaagta ttaatggcta
     1921 gtgcattagg ggcgttttta ttattgcttg ttgcttcaag ttatgccgat ttctattaca
     1981 cacaaaccaa acaaaaagaa cagctctact tgcaagcaga agctcaccag ttactaaact
     2041 acttccaaca gcattttcaa cacattggct atcaaggctc tcacagaaca gacagtaatt
     2101 ttgatttatt tcagcaagca gggaaaagcc tgaatattgt gcataaaaat tgcattattg
     2161 gattttacga tttaaaccaa gatggctgtt tgggaaaacg taagacaaaa acggccgctt
     2221 gtaagttagg aacagtgaat aataccagag aggtgttaaa agaaattgtt ggctttaaag
     2281 tagaaaataa tgaaatttat actttttcat cgcaattaga taattgtgtg aaagaacaat
     2341 gccaaacatt attggaaaat tgcgatggaa attggagtaa atttaccgaa gcaaataatt
     2401 tcaaaactaa gaaactggat tttagttgga gacaggaaga taacttatta aaaattgagt
     2461 tagaaataga atcacctaaa caaaaaggat tgatttatac
//
LOCUS       DANMGB010000237         2473 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.238, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000237 DANMGB010000000
VERSION     DANMGB010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.238"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            61..2430
                     /gene="malP"
                     /locus_tag="PXG19_002476"
     CDS             61..2430
                     /gene="malP"
                     /locus_tag="PXG19_002476"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL6067719.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
BASE COUNT          779 a          502 c          493 g          699 t
ORIGIN      
        1 gatttgattt tatttggatt ttacataata gcgacattca tctttaaccg ggggtttcct
       61 atgacattta attctattgt agaaaaatac tgtcgctact ttgatgtgac agatccaaaa
      121 cactttacct tacagcagtg gtatcaagtt gttgctgaag gttcccttga gctaatttat
      181 agccagcctg caaccaaacc gacagaatca cgccacgtga actacctctc aatggagttc
      241 ttaatcggtc ggttaaccgg caataattta atgaatttag gttattacga acaaattcgt
      301 gactatctta aacaatatca agttgaatta gtagatgttt tagaacaaga gcgtgatccg
      361 gcattgggta atggcggatt aggtcgtctt gctgcctgct ttttagattc gatggcaact
      421 gtcggacaaa atgcaaccgg ctatgggctt cattatcaat atggtctgtt taaacaaagc
      481 ttcaaagagg gaatgcagaa agaagcagcg gatacttggg ctcgtgacag ctacccgtgg
      541 catcgtttta atccgtctaa aacccgccat atcgggtttg gtggaaaaat caaacatatc
      601 caagccgatc aatatgaatg gcagcctaaa ttgaccattc aaggcaaagc ctttgacttg
      661 ccgattgtag gttataaaaa caacatcatt caaccattac gtttatggca agcagatagt
      721 gaccaatctt ttgattttga tgcctttaat gagggtaaat ttttaagtgc cgataaaacg
      781 attgtcaatg cagccgcact aactcaagtg ctgtatccaa acgacaacca tcaagccgga
      841 caaaaattac gcttaatgca gcaatacttc cattgtgcct gctcggttgc cgatatttta
      901 gatcgtcaca ttagcgaagg ttattcgtta gaagatttag caaaacgcca agttattcaa
      961 ctcaatgata cccatccaac gctcgctata cctgaattga tgcgtgtact gttagatgaa
     1021 catcaattca cttgggagca ggcttgggat atttgcagca atacctttgc ttacactaac
     1081 cataccttat tacctgaagc acttgaacaa tgggatcaac gcctatttaa gcagctatta
     1141 cctcgccatt atcaaattgt ggaaaaaatc aatgatattt tccacgacaa agtacaggca
     1201 gaatttggtg atgatgcaaa aatttgggaa aaattagccg tgctatttga ttaccgtgtg
     1261 cgtatggcaa acctctgcgt tgtcacctgc ttccgtgtaa acggcgttgc ggaaattcac
     1321 tccgatctct tagtgaccga tctattcccg gaataccaca aattattccc aacaaaattc
     1381 tgcaatgtta ctaacggcat cacacctcgc cgctggattc gacaagctaa tccacaatta
     1441 agtgatttat tggatcgtac cttaaaacaa gattggacac acaatctgga attattaaaa
     1501 ggcgttgaac aatatgcgga tgacaccggt ttccgtgaag aatatcaacg cattaaacgc
     1561 aataacaaag tggttttagc caatgaaatc cataaaacat tagggttaaa tgtcaatcct
     1621 aatgcgattt ttgatgtgca aattaagcgt ttccacgaat ataaacgcca acatttgaat
     1681 ttgttaaaca ttattgcgac ctatcaatcg ctaaaagcta acccgaacca agactacaca
     1741 ccacgtctat tcctattctc gggcaaagct gcaccgggtt attatttagc aaaaaatatt
     1801 attcacgcta ttaataatgt ggcagatatt attaataacg acaagcaggt aaatgatcga
     1861 ctacaagtgg cattcttacc ggattatcga gtcagtcttg cggaaaaaat tattccagca
     1921 gctgatgtat cagaacagat ttcaatggca ggtaaagaag cctccggtac cggtaatatg
     1981 aaattggcac tcaacggcgc attaacctta ggtacgctag acggtgccaa tgttgaaatt
     2041 gctgatatgg tcggtgagga gaatgtcttt atcttcggtc acaccgtaga aagcgtgagg
     2101 gaattattag caaaaggcta ccaaccgaaa gcctactata accaagatcc gattctgaaa
     2161 aatgcggttg atttcttagc cacaggaaaa gcctctaacg gagataaaga ggcattcaag
     2221 ctgatgttag atagcctgtt ggaacgagat cctttcttag tctttgccga ctttgatagc
     2281 tatcgccaag cacaagagaa aattggtgta gcctatttag atcaagaaac ttggctgcgt
     2341 agtgcaattt taaatactgc tcgtttgggt gcatttagct cagaccgctc aattaaagat
     2401 tatcaacaac gtatttggtt gaatagataa taaattcggg cgacttctac aataaaggaa
     2461 gtcgcctatt ttc
//
LOCUS       DANMGB010000238         2419 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.239, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000238 DANMGB010000000
VERSION     DANMGB010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.239"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1388
                     /locus_tag="PXG19_002477"
     CDS             <1..1388
                     /locus_tag="PXG19_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL6067720.1"
                     /translation="LANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQK
                     ADQHSVTLAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDG
                     LWLVSKTAADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADS
                     GWTPATTFTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKI
                     SLLPSKQSEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQ
                     NISVISSNKEQQIVMTTLTEQEKVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKE
                     FVNWLKEGIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQ
                     YDFQGLGLHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTHLLFGDKMLLN
                     NHCLTLQEEDT"
     gene            1428..2306
                     /locus_tag="PXG19_002478"
     CDS             1428..2306
                     /locus_tag="PXG19_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6067721.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          832 a          400 c          467 g          720 t
ORIGIN      
        1 tccttgcaaa tcagctcatt cccaagtctg cgtttgattg gctgggacag tatccagaag
       61 tcatttcttc actgatgtat gcaatgtctg ggcataacga taaagccggg cttttatctg
      121 agatcgtgca gaaagccgat cagcatagtg ttacgctagc aatcggtggc gatgtgaata
      181 agctggtaca gcgaccagtt aattcattgc cgaagcaaat tgtgctggct ctacgttatt
      241 tactggagca gaaaatcaaa ttaaatacgc caaaaggacc agcagacggc tggtttaccg
      301 aagatgggct gtggctggta agtaaaactg ctgccgataa tatccgaact tatttactgg
      361 gacaggggat ttccgtgcct aaagataatc caaaactgtt tgatgaaatg caatctcttg
      421 gtattgtgga agagtctcct tccggcggtg caatttggag ctgccgtatc caagccgatt
      481 ccggttggac accggcgaca acatttacgc tattacgagt taaaccggag gttgcttggg
      541 agaatatcaa cgatagaccg gcgtattttg ccggaaaagt caaagtgatt gaacagataa
      601 ctgaagaggt caatgcagag gttcagcctc cattagttga agaaaccact aaaatttctc
      661 tattaccgag caagcaatcg gaggctatta ttccgtctga ggaaacggaa atatcgaagg
      721 caattacaag ttcagacaat gcaacatctg cggaagtaat cataaataat gaaaatgatt
      781 taacttcttt tgtattggat atgtttgctc ctacagagac aattgagcaa aatatttctg
      841 tcatttcttc aaataaagag cagcaaatcg taatgacaac acttacggaa caagaaaaag
      901 ttccgccgaa aaaagttaaa ttagagaaaa gtaagaaaaa aaatcttcaa ttaaccactc
      961 tagaaccatg gaatgatatg attaatccaa ttactggaaa agaattcgta aattggttga
     1021 aggaggggat agcaaccaat aaatttgcaa ttaacaaacc ttctgcaaaa ttacatatag
     1081 tagatggtaa tttattttta gtcacaccag ttatttttga aatgtatttg caagaatgtg
     1141 gccaacctta tgataaggaa actataaaca atcttcagta tgatttccag gggcttggtc
     1201 ttcattctct taaaaaaacc atgactaatg gtaagccaga tacaataaat ttttggaagt
     1261 gtgacgtgat tggtcctaga aagacttcct ctttaacagg atatttgata aaaaatactc
     1321 atctcttatt tggggataaa atgttactaa ataaccactg tttaacttta caggaagagg
     1381 acacataata tggattctaa gatttccttc gatatattat tggaacgatt tttttctatc
     1441 gtcattattt acgggcggac acgaaacgaa gttataacaa tattattcga attatcaaaa
     1501 agcgttatcc aaacttaaat gcgaatgatg tgactactga tatgttaatt gaatggcgta
     1561 atcaagttgt tggtaataca attaaagctg tgacgtggaa taattatgtg agacacctaa
     1621 aagcattata taattttgcg atagcacagg ggctactttg catgagtagt aatccattta
     1681 atcatttatt tattagagaa tctagaagaa aaaagaaaac ttattccagt gagcagttgc
     1741 ataaaatcga ttatattcta cataataata tcatcttacc tagtttttta aaacctagct
     1801 ggtttattct tgctatcatt atgacattga gatgcacagg aattaggaga gggcaattgg
     1861 ttaaactgaa aatcggtgat gttaatttat caaataggac gatctatatt tcaccagaaa
     1921 ttaataaaaa ccatgattat catatagtac cgatatccga ttcactttat ccccatatag
     1981 aaaggctgat tcaggagtta aagatccata aacaaacgga tgattgccag ttatttaacc
     2041 tcaatttatt ttctcgttat actcgtagga aaggtcagcc gatgagccaa aaccagctta
     2101 ctcatatatt taggcatatt tccgatttgg ttggcttcac gtcatcacca catagatttc
     2161 ggcatacagt agctactcaa ttgatgaaga aacctgaaaa tgtttatgta gttaagaaat
     2221 tattaggtca taaagatatc agcgttacat taggatatat tgaatacgat gtggaaatgc
     2281 tacgagacac cgtgaactta ctctaataaa agagaaatga gagaaaacta ttctctcatt
     2341 tattgtgata aataggaaac ttctgtctta ttttcagatg aattgatttt gagaacttta
     2401 tcaaaatata agcgtaaat
//
LOCUS       DANMGB010000239         2365 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.240, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000239 DANMGB010000000
VERSION     DANMGB010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.240"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            6..284
                     /locus_tag="PXG19_002479"
     CDS             6..284
                     /locus_tag="PXG19_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6067722.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            309..605
                     /locus_tag="PXG19_002480"
     CDS             309..605
                     /locus_tag="PXG19_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6067723.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
     gene            complement(658..1449)
                     /locus_tag="PXG19_002481"
     CDS             complement(658..1449)
                     /locus_tag="PXG19_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6067724.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
     gene            complement(1593..2360)
                     /locus_tag="PXG19_002482"
     CDS             complement(1593..2360)
                     /locus_tag="PXG19_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL6067725.1"
                     /translation="MVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNIIE
                     RKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDAIT
                     NMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLLSK
                     MNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQKS
                     GMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
BASE COUNT          712 a          440 c          476 g          737 t
ORIGIN      
        1 tttcaatgaa aaaattactt gcaattgcaa cagtattttc tttagcagcc tgttctactc
       61 aaacacttga actatctcct gctaaggaag ctcaatatga tcgtgttcaa cacttctttg
      121 tttcagggct tgctcaaaaa caagagatag atgcagcaaa aatttgtaat ggtgcagata
      181 aggtaggtaa ggtagaaact gaaactactt tctttaatgg cttgttaggt acaattactt
      241 atggtatcta ttcacctcgc caaatccgtg tatattgtaa ctaatcctag taatttaagg
      301 agttgaaaat gaaaaaattg cttgctatgt ctgtattaac agccctgctg actacagcat
      361 gtacaacaca aactgcccat attggcggca aagttactga taatattaaa ccaactaaga
      421 gtgtaactca gtcgttcttt ataggtggga ttgggcaaga agaaacattg aatgttgtag
      481 aggtttgtgg ttccaaagat aaagtgcagc aggttgaaac agtactttca ggtggggaca
      541 ttctattagg tcttgtgact atcggtattt atacacctcg tactgcaaat gtatattgta
      601 agtaatattt tattaaaaaa ataacggact caattgagtc cgttattttt ataggaatta
      661 ctcttcgtcg cctaattcac ccattgccat tacgctgaag ccggcatcaa cgtgtaacac
      721 ttcacctgtt acaccagagg ctaaatctga gcataagaaa gctgcagagt tacctacatc
      781 atcaatagtt acggtgcggc gtaaagcagc ggttttctcg aaagcagaaa gcattttctt
      841 gaagttttta atgcctgaag cagctaatgt acggatcggg ccggctgaaa tcgcatttac
      901 acgaatacct tctttaccta aatcggctgc cattacacgg gttgcagctt ctaaagaggc
      961 tttggctaag cacattacat tgtagttggg gattgcacgc tctgcaccta agtaacttaa
     1021 ggttaaaagg gcggcatttt catttaagaa ggggcgagca gcttgagcca ttgcaacaaa
     1081 gctataggca ctgatgtcgt gtgcaatacg ataaccttca cgggttgcgg catttacata
     1141 atcgccgtct aattgatcgc ccggtgcaaa tgcgatagcg tgaacaaaac cgtcaaattt
     1201 ttcccaatgt ttgcttaatt cagtaaagca ctcagtaatg ctttcatcgg ttgctacatc
     1261 taacggaagg acaatgtctg agccaaattc tttggcaaat tcttcaactc gtggttttaa
     1321 tttatcgttt aagtaggtga atgcaagttc tgcaccttgt tgcttcattg cgtttgcaat
     1381 accgtaagcg atcgaacggt tgcttgctaa acctgtcact aaaatacgtt taccagttaa
     1441 gatacccata aaaattcctc ttttatattg attggggcaa aattgtgtcg attataacgg
     1501 atataggaaa aacgggcaaa tggagttagc ggctcatcgg atcagaaatc cctttttgaa
     1561 cgaggtttca aaaagggatt tggtaagata aattaagcgg tagtttgagc aataatattt
     1621 tgctgcggtt tgattgcccc ggctaattcg gctaattctt ccatacggtt aataataata
     1681 tattttcctt gtactgaaat cataccgctt ttttggaaac gccctaataa acggctgata
     1741 gtttcaatgg ttaaaccaag ataattgccg atatctccac gggtcatagt tagacggaac
     1801 tcttttgcag agaaaccacg ggctgagtaa cgttgggaaa gattatacaa aaatgcagct
     1861 agtttttctt ccgcattcat ttttgagagc aatagaatca tttcttgatc gcttttaatt
     1921 tcattactca tcaaacgcat aatttgatgg cgaatttttg gcattttgcc ggcaagatca
     1981 tctaaaatat cgaatggaat ctcacaaatc attgaggttt cgagtgcttg agcatagcct
     2041 tcgtgctgca tattggtaat tgcatcaaag ccaattagat cgccaggtaa atggaaaccg
     2101 gtaatttgct cttcaccact ttcacttaag gtataggctt ttaatgttcc agaacggata
     2161 gcataaagcg aacgcagttc atcacctaac ttaaaaataa cttgcgattt ttgaatcggt
     2221 tttttacgct caataatatt atctagttga gttaattccg tttcattaag agtaaaaggt
     2281 aagcatagtt ggctaatact gcaattttga caatgaattg tgcaagtatg acgtccgctt
     2341 gttttaggtt ctgatacaat tttca
//
LOCUS       DANMGB010000240         2354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.241, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000240 DANMGB010000000
VERSION     DANMGB010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.241"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            50..2338
                     /locus_tag="PXG19_002483"
     CDS             50..2338
                     /locus_tag="PXG19_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL6067726.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
BASE COUNT          688 a          487 c          524 g          655 t
ORIGIN      
        1 ttagaggtag tattgcttgt gttaggaagg aaatattgaa ggtataaaaa tggaagaaca
       61 tactattcag tctttttatg cccattcggg gaagctttca gatcattcag attggcaaac
      121 tttactcagc cacgccaata atgttggctt gcttgccgcc gaatttgctg cgccgtttgc
      181 ttcacaagaa attgctcgct gcacggggct attgcacgat ttaggcaaat atagtgaacg
      241 ttaccaaaag cgtttacatg gcggagaacg ggtaaatcac tctactgctg gtgcaaaaat
      301 tgcagtggaa cgttgggggc ctttgggcaa aatgatggcg ttttgtatcg caggccacca
      361 cgctgggtta gcaaatggtt ctggagaagg gaaaaatcgt tctacactta cacaacgttt
      421 gcaagagcaa tttggctatg gtcataaaga tctaccggta cttgacgcta tttggcagca
      481 agaacttaat ttgcctgaaa aattgccctt accgccgtta aagccttcta aaaacgaacc
      541 tttcttttct tacgcctttt ttatccgaat gctctattct tgccttgtcg atgccgactt
      601 tcttgataca gaagcttttt atgccaatct cgaaaaaaga ccgcttgaac gaggaaatta
      661 ccccaattta accgcactcc atcagcaatt taatcaattt attgcacagt ttagggagcg
      721 aattgccact caaacgccta atacgcagga agcacaacgt aaagcggaag taaaccgctt
      781 gcggagtgaa attttggatt atgccgtatc tcaagcaaaa caggaaacag gtctgttttc
      841 tctgactgtg ccaacgggcg gtggtaaaac ctttacttca atggcgtttg cccttgagca
      901 tgctaaacag tatggtttat gccgcattat ttatgttatt ccgtttacca gcattattga
      961 acaaaatgct gcggaatttc gtaaagcttt tggcgaatta ggaacagagg cggtattgga
     1021 acatcacagc acttttgatc acgatagcct acctgataaa tcaagccgag ataagctgaa
     1081 attggcatca gaaaattggg atactcctgt tgtggttaca actgcagtgc aattctttga
     1141 aagtttgttt gccgaccgtt cttcacgctg tcgcaaattg cataatatcg tcggtagcgt
     1201 gattattttg gacgaagccc aaatgctacc gttgaattta ttacgcccaa ttatggctgc
     1261 gattgatgaa ttagctcgca attatcaatg ttcggtagtg ctttgcacag cgacacaacc
     1321 cgctattcat caagcgaacg gtttttataa aggatttgaa aatgtgcgag aaattgcccc
     1381 taatccaacc gcactttttg aaaaattgaa acgtactacg gtaaagcata tcggtattca
     1441 aacagatgtg gagttgcaaa gcaaactcgc agataaccca caaatgctga taatcgtgaa
     1501 taaccgccgt cacgcccgag cgttatatga ttcagcgaaa cagttagagg gagcttatca
     1561 cctcaccacg ctaatgtgtg ctaaacaccg ctcacaaacg ctgactgaaa ttcgtcttcg
     1621 cctaaaacaa aacctacctt gccgagtgat tgccacttct ttaattgaag ccggtgttga
     1681 tgtcgatttc ccactggtta tgcgagctga agcaggacta gattcagtgg ctcaagcagc
     1741 agggcgttgc aaccgagagg ggaaacgttt atctgtagaa agcaatgttt gggttttcca
     1801 acctgaagaa cagtggaaag caccaccaga gctaggctta ctttctggct gtatgcgttc
     1861 aacggttcag gttcacgcag atgatctact taatccgaaa gcaatcaatc attatttcca
     1921 agcggtttat gaggctaaag gaaaagagct ggataagcca aatattttaa aggcgtgtca
     1981 cgacgctggg caaagcctta atttcccatt ccaaaaaata gctgaagatt tccgaatgat
     2041 cacaagccat ttaattccgg tgattatccc tttcgaccaa gaagccgaaa accttattga
     2101 ccgtttacgc tatgcggatc aagtaggcgg tattttaaga aaactccagc cttacactgt
     2161 gcaagtaccg gaaaaagcat tagccgaact ctataacgct ggcagagttg aaaccattaa
     2221 tgaaaccaac ttcggcaaac agttttactg cttaattgga atggatttgt atgatgaagt
     2281 ggcggggttg agttgggaga atgtggattt tcttgagtcg gagaaattgg ttttatagat
     2341 gaatgtttat ttta
//
LOCUS       DANMGB010000241         2320 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.242, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000241 DANMGB010000000
VERSION     DANMGB010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.242"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(39..209)
                     /locus_tag="PXG19_002484"
     CDS             complement(39..209)
                     /locus_tag="PXG19_002484"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067727.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            complement(235..420)
                     /locus_tag="PXG19_002485"
     CDS             complement(235..420)
                     /locus_tag="PXG19_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067728.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            complement(437..512)
                     /locus_tag="PXG19_002486"
     tRNA            complement(437..512)
                     /locus_tag="PXG19_002486"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(477..479),aa:Trp,seq:cca)
     gene            complement(740..1213)
                     /locus_tag="PXG19_002487"
     CDS             complement(740..1213)
                     /locus_tag="PXG19_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067729.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            complement(1203..1772)
                     /locus_tag="PXG19_002488"
     CDS             complement(1203..1772)
                     /locus_tag="PXG19_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL6067730.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            complement(1900..2094)
                     /locus_tag="PXG19_002489"
     CDS             complement(1900..2094)
                     /locus_tag="PXG19_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067731.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
BASE COUNT          697 a          535 c          362 g          726 t
ORIGIN      
        1 taaaaatgat tgaatttact ctgtaccacc agaagcattt aaccttgctt cacgtcatta
       61 ttactggcaa atggataaat tttcctactt cggaagtgct gaacgcaatc tgatatacgt
      121 cgagatggcc agcccacggc atagcgatct tgagattttt cttgatcttc ttcaccgctt
      181 tttgactgag tatttagttg ttccgtcata gcaatccctc attgattttt gtagctaaga
      241 tagatcttca acccttggga aagggaaatt tggcggagcc ttaattccta acttttcatc
      301 tcttaatcga gagagggctt tgcaaccagc aaaagtaagt gttccagctt cagaaaaata
      361 aggcttatct tcaccaaatt tttctctgca ttcttgaatt gcatcatcaa ggttatacat
      421 aacatttact cgcatttgga aagggtggtt ggactcaaac caacaaccaa cgattttgga
      481 gaccgctgct ctaccaactg agctacaccc ttaaaatccg taaacaaaaa agccccaagc
      541 atttctgctc agggctgtta aactaattcg gtcggcatac tgccacgcaa acgctgaaat
      601 aactatactc gacgtcgttt ctagttattc tcctccgaac tgaatattac ttcaggctgc
      661 gtctttaact aacattggta aacatcattt atactacgtc caccattagc acaaaatata
      721 cacttgttac gcactaaaat caaggggaaa attgatattt tttcagttta tctgtagaat
      781 tactggatga aatcttgctt tcaagaatat ctgcaataat tctttccgct tttttgcatt
      841 tatcttgaat aatttcttgc catcgtcttt cttttctacc ctcgctgtcc cttagttgat
      901 aataaatagc gatttgccgc tccgaacgcc cgaaccagta tttttgtttg agtatatcgg
      961 ctaacattac gtctcttttg gtgactaccg taaaaatctc attgatcagc gtgccgaggc
     1021 tatcgttaca aacctctcta gatgaaagac ttttaacccc ctccgcagat ttcatcagcc
     1081 ggtaaatcat atttacccga ctttctaaat ccaatccgcc aaattcccac gccccccata
     1141 accttagcaa ctcttcgatc catttctgct tttcaggctc taaccacttg tttttaattt
     1201 ttctaggtaa cacgctcaag ctccttgcac ttcgctttat agactttgat taaatctttg
     1261 atttgttcga tagtaagttt taatggtggg tggtctttac gctctaaaaa ttccacacgc
     1321 tcaagcccga ttttctcaat cagatttact cgataattca caatattgcc gtgcagatgt
     1381 cggttacacg gcacacattg actgtggcaa ttatcttcat taaaacgtag ctcaggatta
     1441 ccaccaacgg ttttataatg ccctgcatca tatttcccct gatgatagcg gccacaggaa
     1501 atacagggta aatctttatc acgcaagcga atgaatttat taaatatctt ttgtaaatct
     1561 ttctcaaaat ctctacggct tttcaatttt tccagccgct tccgttgctc caagcggtcg
     1621 atttttgcac tttttttgcg tttcgcctct gtcttacgct tacccattgc catagcacac
     1681 ttaacagagc agacctgctg cgtgctttga aatttgatgt aataactgcc gcactctttg
     1741 catttgtgtt gtttaggtgg tttgttagcc attccaaccc tcaccatctc tcttatcaaa
     1801 ccactcaata aaaaagagtg aaccggcaca tacactaaga atagcgatgg cgattaaaat
     1861 tacagtcagt tcattgcact ggctcactta ttaatctcct taaataacat tccgcataac
     1921 agaaataaac cacaaccaat aacaagtgat attaaaacct aactgaataa tcaccataaa
     1981 ccacggtgcg tttttaatat tcatattcat taaagtagta ttaatcgcca acaaacagct
     2041 tggaataatg ccaaataaca tcacgaatgc gatagtttca aaaaattttg tcatcttact
     2101 tctccttccc ccgaattcga gggaattaat aaacacacac taaatcggag caaaaccgcg
     2161 cttaaaataa taaagccatt cttgatatgt ccattgacag aaaacaataa aactaccgac
     2221 tgctgcaaag aatgctaatg gataaatcaa taaataacct acatatctaa cagtaagaat
     2281 gactaagaaa aaaagcactg caataattct gaatggcacg
//
LOCUS       DANMGB010000242         2291 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.243, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000242 DANMGB010000000
VERSION     DANMGB010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.243"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            101..529
                     /locus_tag="PXG19_002490"
     CDS             101..529
                     /locus_tag="PXG19_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6067732.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            535..1257
                     /locus_tag="PXG19_002491"
     CDS             535..1257
                     /locus_tag="PXG19_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL6067733.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            1267..1686
                     /gene="psiE"
                     /locus_tag="PXG19_002492"
     CDS             1267..1686
                     /gene="psiE"
                     /locus_tag="PXG19_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL6067734.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            1695..>2291
                     /locus_tag="PXG19_002493"
     CDS             1695..>2291
                     /locus_tag="PXG19_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL6067735.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQ"
BASE COUNT          659 a          460 c          483 g          689 t
ORIGIN      
        1 attttgcgaa gatcaaatag aaaatttgat aaactagaac taactcgcat tttattgctc
       61 catatgatta gaaattaacc taaaatatta aaattttgtt atgacacacg attggctcta
      121 ttgggcatta gcctctgcac tttttgcagc attaaccgcc atttttgcca aagttggctt
      181 acaaggcgta gattctgatt tcgccacttt tattcgcacg gtagttatta ttattgcact
      241 tattgccttt ctcacttaca gcggaaaatg gcagccgtta gatagcttga gcagcaaaaa
      301 ctggctgttt ttaatcttat ccggcttggc aacaggattg tcttggtcgg cgtatttcaa
      361 agcattgcaa atgggtaatg cttcccaagt cgctccaatc gataaattca gcttggtgtt
      421 agttaccctt tttgcagtaa ttttcttagg cgaacgccca agcggacaag attggcttgg
      481 cattggctta gttgctggtg gcgtactgtt acttgccttc aagcggtgat ttttatgcaa
      541 aattttgcaa atattgaaat tgcgtttatt catcggaaag cacctctgcc gagtgatttc
      601 tcctaccctg aaatgcccgg cggtttaact gaaaaacagg tgcaaaaatg gcaaagccgc
      661 cgagtcgcct tttttctgct gacggaattg tttaaaaaac accatctgga tttagattta
      721 ttagctgata tgcaacgctc cccaagcggt cgcacttttg tcgattctga gcaaattgac
      781 tttaacatca gccattcagg ggaatggata gcggtcattt tttcgtattc ttttgcaaaa
      841 ttagcggtcg gcattgatat tgaacaccca caaaaaatca gacgttacca cgatttaatc
      901 tgccattacg gaaacgctga agaacaaaat gttttattag ccaaccactc ccccattcta
      961 agcaacctcg ccgaacgctt ttatttgagc tggtgcttgc gagaggcgat attgaaatcg
     1021 caaggggtgg ggattgtgaa actgtccgaa gtaaaacatt taccgttaga aaaacagatc
     1081 ttttccgccc attgtccgaa aggcaagctg cattttgtga gcgaactgcc gttctattta
     1141 agctacttct atcaacaacc tcaaaatatg ctattatctg aacctttgct ataccattgg
     1201 caaaacgggc agtttcagcc tataaagtgc caatcacttg tttatgatgt taattaagga
     1261 taacgaatgc ctaaaaaatc tttagaagaa caccattcca gttttggcaa aattgcttcc
     1321 gaaacctttc agtggattat gaatattgcc ttgctagtaa caggagcatt gctttcttac
     1381 tcgctgtttg ctgaagccta ttcactctat gaactttcct ttagcgacag tgagaaattc
     1441 caaattgtag aaaaaatagt aattttcttt ctctattttg agtttcttgc gttgattgtg
     1501 aaatatttca aatcgaatta tcactttccg ttacgctatt tcctctatat cgggattact
     1561 gccatggtgc gtttgattat tgtcgatcat tctaatgcgt tgcatacact attattcgca
     1621 ctctctattt tggtgatgat tatagcatta tatattgtac acaccgatcg tttacataaa
     1681 agctaggaac taatatgaag ctaacccaat atcagcacaa tgatttacag attctaaacc
     1741 gagaaaccgt ctataaaggg cattttgagc tacaaaaaat cactttccgc cataagctgt
     1801 tttccggtga aatgagcggt gaagtggtgc gtgaactctt aattaaaggc gaagcggcgg
     1861 ctttaattgc ctatgatcca accttagata aggtagtatt aattgagcaa gtgcggattg
     1921 gagcttacga tgcaggacag aaaaaatccc cttggttgct ggaattggtt gccggtatgg
     1981 tagataaagg caacgaagag ccggcagaag tggcaatgcg tgaagccaaa gaagaagccg
     2041 gcttggaagt cacaacagtg caacacgcct taagcgtatg ggacagtccc ggtggacaac
     2101 tggaacgctt gcacctgttt ctcggcttga ttgacagcac ccaagtgaaa tccggcgagg
     2161 tacacggctt actggaagaa gaaaatgaag acattttggt tcacgttgta agccgtgaac
     2221 aggcatatca atgggtagaa gacggcacaa ttgacaatgt gattgcggta attgggctac
     2281 aatggttgca a
//
LOCUS       DANMGB010000243         2251 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.244, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000243 DANMGB010000000
VERSION     DANMGB010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.244"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            14..1162
                     /locus_tag="PXG19_002494"
     CDS             14..1162
                     /locus_tag="PXG19_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL6067736.1"
                     /translation="MTLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDN
                     ITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEG
                     QGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGALSRKANQPQALVR
                     IANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRS
                     MAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGK
                     MGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPTVYQVNLLKPQSM
                     FLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY"
     gene            1234..>2251
                     /locus_tag="PXG19_002495"
     CDS             1234..>2251
                     /locus_tag="PXG19_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6067737.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQKYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIY"
BASE COUNT          743 a          405 c          440 g          663 t
ORIGIN      
        1 tacattatta tttataacat tatcattaat ttcagcctgc tctagcctac caacgtccgg
       61 cccaagctat agcgaaatct tagcaagtaa tgaaaataca gctgaaacgc agttgcctga
      121 agtcaattta atcaagttag ataacatcac cgtacaaaac ttataccaag agcaacaatc
      181 tcaacgtttt tcaggatttg atggctcaat gggtgtgggt ggttatgctg gaacagttaa
      241 tgtaggcgat atattagaaa tatccatttg ggaagcgcca cctgccgtgc tatttggtgg
      301 aacatttagt gctgaagggc aaggtaatgg gcatttaacc caattacctc agcaaatggt
      361 gaacaaaaat ggaacggtaa ctgtgccttt tatcggtaat attaaagttg ctggaaaaac
      421 acctgaagta attcagaatc aaattgtcgg agcattgagc cgtaaagcta atcaacctca
      481 agcattagtt cgtattgcga ataacttgtc gtctgatgtt acggttatcc gccaaggaaa
      541 tagcattcgt atgccattaa gtgccaataa tgagcgtatt ttagatgcag ttgcggcagt
      601 aggtggtaca agcgaaaata ttgaagatgt aacagttcgt ttaacacgtg gaaataaagt
      661 gcgttcaatg gcgtttgaaa cattaattgc tgacccctca caaaatatta cattacgttc
      721 aggtgatgtt attgctttaa tgaatactcc ttatagcttt accggattag gagcagtagg
      781 taataatcaa caaatgcgtt tttcaagtaa aggcattacc cttgctgaag ctatcggtaa
      841 aatgggagga ttaattgatg agcgttcaga ccctcgtggt gtgttcgtat tccgccatat
      901 tccttttaca caattagatt acgataacca agctcaatgg cgtgaaaaag gttatgcaga
      961 gggaatggac gttccaactg tttatcaggt gaatttatta aaaccgcaat caatgttttt
     1021 attgcagcgt ttccctattc aagataaaga tattgtatat gtgtcgaatg ctccactgtc
     1081 tgaatttcaa aaattcttga gaatgatttt ctccattact acaccaatta caggtacagc
     1141 taatacaatt agagcgtact aattagctca tagataaaat ggtaaaaaat cattaaaaaa
     1201 tgaccgcttg taacactttt cgttgaggat tttatgtcaa agaagaaaaa acatttttta
     1261 gccaaccctt tgttgtggct aactgtaatt attccaactg cttgttctgg aatttattat
     1321 tccttatttg cctctgatat ttatgtttca gaatctagct ttgtggttcg ttcgcccaat
     1381 aatcaatcga gcttaacagg cgttggtgct ttattgcaaa actccggttt cgcccgttct
     1441 caagatgata cctattcagt tcagaaatat atgcgttccc gtaccgcatt agaacaactt
     1501 gaagcagaaa ttccggtaaa gcgtttttat agtgagcaag gtgatttact aagcaaattt
     1561 aacggtttag gatttaacga tacccaagaa gcattttatc gttattttaa agaacgtctg
     1621 aatattgatg tcgattctat ttcaggtatt gcaacgctac gcgttcgtgc ttttaatgca
     1681 gaagaaggac aaaaaattaa cgagaattta ttacagcaag gggaaacatt aattaaccgc
     1741 cttaatgaaa gagcaagaca agatacggtt gagtttgcag aagagcgtgt aaaagaggcc
     1801 gaaaaagacg tcaataatac tgcgttagca ttaagccaat atcgaactaa aaataaaatt
     1861 tatgatttac cggcacaatc cagcgttcag ctctcattaa tttctacctt aaaaagtgaa
     1921 ttaattcggg tagaaacaca attagcacaa ttgaagtcaa ttacgccgga taatcctcag
     1981 gtagccgcat tacaaatgcg tcaaaaaagt ttgaaaaaag aaattgatga tcagtccaaa
     2041 caacttgcag gaggtaatac ttctgtagca acgcaaactg ctgaatatca acgtttggtt
     2101 cttgctaacg aattagctca gcaacaactt gcagcagcaa tgacttcatt acaaaataca
     2161 cgaggtgaag ctgatcgcca acaactttat ttagaggtaa ttggtaggcc aagcaaacca
     2221 gattgggcat tagaacccta cagaatttat a
//
LOCUS       DANMGB010000244         2246 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.245, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000244 DANMGB010000000
VERSION     DANMGB010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.245"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(55..684)
                     /locus_tag="PXG19_002496"
     CDS             complement(55..684)
                     /locus_tag="PXG19_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL6067738.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            788..1435
                     /gene="udk"
                     /locus_tag="PXG19_002497"
     CDS             788..1435
                     /gene="udk"
                     /locus_tag="PXG19_002497"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL6067739.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            1450..2031
                     /gene="dcd"
                     /locus_tag="PXG19_002498"
     CDS             1450..2031
                     /gene="dcd"
                     /locus_tag="PXG19_002498"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL6067740.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            2109..>2246
                     /locus_tag="PXG19_002499"
     CDS             2109..>2246
                     /locus_tag="PXG19_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL6067741.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILTVI
                     SF"
BASE COUNT          765 a          427 c          384 g          670 t
ORIGIN      
        1 ctactaatat agcaaaaaag cccgtcattc atcaatgaaa aaatttaaac tccactagaa
       61 aatttgcaga gcaagttgat aagtataaat cagtaaacta aaagcgataa agtacataat
      121 tagcccggta acagcatcta aaatttgcca agttcttcgc tttgcaaaat aaggggaaag
      181 taagcttgct ccataaccta tgccaaaaaa ccaaataaat gagcaaagta atgcacctgc
      241 taaaaagtat attttaccgt taaaatctaa tttcccaccg atactgccta caatcacaac
      301 cgtatcaata taaacgtgag gatttaagaa tgtaatcgca aaggtaatca gtaaagcctt
      361 ttttaagctc gttgcattct ctccacttgc cacaaggtat tcaccacttt taaatacgct
      421 gataaatgaa cggctaccgt agcttaatag aaaaatggcc cctaaaagcg aaataatgaa
      481 acttacaaca ggcaattccg caattaacgt gcctaagcct agcacaccta tcgtcattaa
      541 aaatacatca cctaaaaaac agagcaatgc aatccaaaat atgtgttgtt ttaaaatccc
      601 ttgctttaat aaaaaggcat tttgtgcgcc aatagagaca attaagccaa aacacactat
      661 aaatccttga atgaaaatat ccattttttc tccaaaatcg cataacaagc ggtcaattat
      721 acaaaaaatt ttgcaaaact tcggtataat ttatcgaata ctcttttgac tgaataggaa
      781 attttttatg actgatacta gccagacttc atcttgcgtt gtcattgcga ttgccggcgc
      841 atctgcctca ggtaagagcc tgattgcctc aaccatctat aaagaactca aaaatgaatt
      901 gggaacagat aatatcggta ttatttccga agatgcttat tatagagatc aatctcatct
      961 aacaatggaa gaacggatta aaaccaatta cgatcaccct aattcaatgg atcatcattt
     1021 attggttgaa catttacgcc aattaaaaca aggtaatgcg attgaaattc cagaatatga
     1081 ctataccgaa cataatcgta aaacgaccac gaagcacttt gaaccaaaga aaatcattat
     1141 tttagaaggt attttattgc tgacagatga gaatattcgc aatgaaatta atgtttctat
     1201 tttcgtagat gctcctctgg acatctgctt tatccgccgc ttacaacgtg atatggtgga
     1261 acgtggacgt tcgatggaat cagtgattag tcaatatcgc aaaaccgttc gcccaatgtt
     1321 cttacaattt atcgaaccct ctaaacaata tgctgatatt attgtgccaa aaggtggcaa
     1381 aaaccgtatt gccattgata ttcttaaagc acaaattaag caattactaa aataaaatag
     1441 gagctaaata tgcgtttatg tgatacagat attaaacgtt acttagatga aggtattatt
     1501 gccataacgc ctcgaccttc agacgataaa atttctggcg ccactgcaga tgtgcgttta
     1561 ggtaattcgt ttcgtgtatt tcgtgaacat aaaacgccct atattgattt aagtggccct
     1621 agagaagaag ttgccgctca gttaaataaa gtgatgagtg atgaaattat catcggtgat
     1681 gatgaagcat ttttccttca tcccggtgac cttgcactcg caacaaccct tgaatcggtt
     1741 tccttaccag ccaatatcgt tggatggtta gatggtcgtt cgtcacttgc tagattaggc
     1801 ttaatggtac acgttaccgc ccacagaatc gatccgggtt gggaaggcaa aattgtattg
     1861 gaatttttta atgctggaaa attaccccta gctttacgcc ctaatatggc aattggcgca
     1921 ttaagctttg agattttaag tggtgatgct gcaaaaccct ataatgcgcg aaaagatgca
     1981 aaatataaga accagcaaag tgccatttca agtcggatta atcaagatta atatagtaca
     2041 tgccttgcaa tcatacatta actatgttag ttttttaatc agtttattac acagtaagga
     2101 gtataactat gttacattat gcagtcgtat tttttgtcat cgctataatc gcagcgctat
     2161 taggatttgg tggtattgct ggaagtgcta ctgaaattgc caaaattctc ttttttgtct
     2221 ttttaatact tactgttatt tcgttc
//
LOCUS       DANMGB010000245         2198 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.246, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000245 DANMGB010000000
VERSION     DANMGB010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.246"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            172..1317
                     /gene="lldD"
                     /locus_tag="PXG19_002500"
     CDS             172..1317
                     /gene="lldD"
                     /locus_tag="PXG19_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL6067742.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(1371..1640)
                     /locus_tag="PXG19_002501"
     CDS             complement(1371..1640)
                     /locus_tag="PXG19_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067743.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(1715..2101)
                     /locus_tag="PXG19_002502"
     CDS             complement(1715..2101)
                     /locus_tag="PXG19_002502"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067744.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
BASE COUNT          654 a          439 c          495 g          610 t
ORIGIN      
        1 tgaataatca attgttttgt tggttgcttt ttgtgcaatt gtatttttat gctaattggt
       61 ttgtaacaaa aatgtgatct atttctcata ttttgcaaat agtagtaatt cttattttta
      121 ttttaaagta gaatagccgc acttttttct taatgattta tgaggtttta aatgatcatt
      181 tcatctgcaa acgattaccg ccgtgcggca aaacgtcgtg ttcccccttt tatgttccat
      241 tatgcggatg gcggttctta cgccgagcag accttacgtc gtaatgtgag cgatttggaa
      301 gacatcgccc tgcgtcaacg tgtgttaaaa gatatgtcgc aactagacac cggcatcgag
      361 ctgttcggcg aaaaactgtc tatgccggtg accctcgccc ctgtcggtgc attaggaatg
      421 tatgcccgcc gtggcgaagt gcaagcggcc aaagccgcag ataacaaagg tattccgttt
      481 accctttcca ctgtctctat ttgcccgatt gaagaggttg caccggcaat caaacgcccg
      541 atgtggtttc agctctatgt gttaaaagat cggggcttta tgaaaaatgc attggaacga
      601 gccaaagccg ccggttgttc cacgctagtg tttaccgtag atatgccgac ccccggcgca
      661 cgttatcgtg atatgcactc cggaatgagc ggcccataca aagacattcg ccgtgtgttg
      721 caggcaatgg ttcacccgtt ttgggcgtgg gacgtgggca ttcacggtaa accccacacg
      781 ttaggcaatg tgtcaaacta tatgggtaaa ccgattgatc tgaacaacta catcggctgg
      841 ctgaccgata atttcgaccc atcaatttcg tggaaagatt tagagtggat tcgtgaattt
      901 tgggacggcc cgatggtgat caaaggcatt ctcgacccag aagatgctaa agatgccgta
      961 agatttggtg cggacggtat catcgtctcc aaccacggtg gtcgtcagtt agatggggta
     1021 ctttcttctg ccaaagccct gccaagcatt gccgatgcag taaaagggga gatcaaaatc
     1081 cttgccgact ctggtatccg caacggctta gatgtggtga gaatgctggc tctcggcgca
     1141 gattgtacga tgatcgggcg ttcctttgtt tacgctctta gcgccgccgg tcaagccggt
     1201 gtggaaaacc tgctcgacat cttccttaaa gaaatgaaag tggcgatgac acttaccagc
     1261 aatgctaaaa ttagcgacat cggcagagat gctttggtag atttaagtaa tctttagctc
     1321 aaatagccac aatccgcacg ttttaggtgc ggattgttat tttagatagg ctaatttggc
     1381 attttggtaa tattaatgcg gtaatatttc aatgtatctt ggttgaaaaa gagaaattca
     1441 tcgttatctt tagttttttc gcccagcaca taaatgttat tgcgatgaat agataagaca
     1501 taatatcgct tattttcaat ttcaagataa tcatacgttg ttctcagctc agggcgaatg
     1561 tagccaatac tcaaagaaag taagctaaaa tagatgaaaa taaaaatata gaaaaaaccg
     1621 aagcgttctt cgcttaacat tttttgaata tctaagtgga atacgcggtg gccccaatgt
     1681 ttgtgaaata ataatactga tagggtagtt gtccctagat agaggtagtt gtccctagat
     1741 agagtaggtg taaatacatt ggcactttgc caataaacag atagaaactg atcattactg
     1801 gcaagctaaa aatagtaaca agaacactca cccgtagcca gccaaggtat ttaaagtaat
     1861 gcagcttaaa aactttatta actaaagcgt atcctatcaa ataaaaaaga aagatagtta
     1921 aaaatgtgcc aaaaacgtag gctagtgcgc gagctatacc ggcattacca acctcaacat
     1981 gccaccacgg gtagccatga aaagcagcaa taccccaagc ataacagtaa gcggtagaaa
     2041 aagagattaa agtaaagaaa gcgagagtaa gagaagagtt gatgaatttc tgattagtca
     2101 taacagtaaa tagattgcac ctacttagtt aaagatgaaa cacaagaaag cagactgagt
     2161 ttagcttcca cccaactcct ttgtttagag gagaactt
//
LOCUS       DANMGB010000246         2176 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.247, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000246 DANMGB010000000
VERSION     DANMGB010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.247"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            274..954
                     /locus_tag="PXG19_002503"
     CDS             274..954
                     /locus_tag="PXG19_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL6067745.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            966..>2176
                     /locus_tag="PXG19_002504"
     CDS             966..>2176
                     /locus_tag="PXG19_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL6067746.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLP"
BASE COUNT          651 a          387 c          440 g          698 t
ORIGIN      
        1 tagaataaaa acagaaaaat tattttagca aacttgcata aaatactctt tttaaaagca
       61 taatactctt tcgtaacatc acccaaataa ggaataagcg atataaaaaa acaagcataa
      121 atttcttcca ttttttgcaa aaaaattatt aaaacaaacc gcttgtctta aaaacataat
      181 ttaatttcgt gatctttact aatacatcaa gtaaaatacg ccggacttta cagtaagaag
      241 tcattgtcaa tattatcact atggagatat tttatggcat tgaataacat tttaggttta
      301 ttcgcccagt ccccacttaa accgttacaa aaacactcaa ataaagtgac tgaatgtagc
      361 gagttattag aatctttttt tgaagcgact tttgaacatg attgggaaaa agcagctgaa
      421 gtgcgcggta aaattgttga tttagaacgc cgcgcagatg cccttaaacg tgaaatccgc
      481 ttaaaactgc ctcgtggttt atttatgcca gttgaacgcg gtgatttatt agaactagtc
      541 acacaattag ataagttagc aaactattca agagatattt ccggtcgcat tattggtcgt
      601 aaattaatca ttcctaccga aatgcaacca cttttcaaaa aattcctttc tcgtagtatt
      661 gatgctagcc gtcaggtacg caaagttttg gatgaaatgg atcagttatt agaaactggt
      721 tttagagggc gagagcttga tttcgtcaat aaaatgattc ttgaacttga ccaaattgaa
      781 gatgataccg accaatatca aattacatta cgtcatacac ttcttgagtt agaaaaaaac
      841 ctgaacccta ttgatgtgat gtttttatac aaatgtattg aaagaatcag cgttctagct
      901 gaccaagccc agcgaattgg ttctcgtatt gaacttatgc tggcgaagtc ataggagaaa
      961 attaaatgga attactcaat caatatggct caatactggt gattattact gctattgtag
     1021 ggtttatgat ggctttcggt attggtgcta atgatgtttc aaatgccatg ggaacatccg
     1081 tcggctctgg aacaattacg attaaacaag ctattttaat tgctatggta tttgaatttg
     1141 ctggtgctta tctggcaggc ggtgaagtcg cagatacaat taaaagtggc attattgatc
     1201 cggcacaatt cgccaatagc cctgatatcc tggtacttgg aatgatggca tctctctgtg
     1261 ctgccggaat gtggctaatt attgcaacta aaatgggttg gccggtttca gcaactcaca
     1321 caatcattgg tgccgttatt ggttttgcat taatcactat tggttcagat gcaattcaat
     1381 gggatgcatt aggtggaatt gttgggagtt ggtttgtgac ccctattctt gcggggatcg
     1441 tagcatattc gatctttatt aactcacaaa aactgatctt taaccgctca aacccattca
     1501 aacaagcgaa aaagtatggc ccgatgtaca tgggaattac tatttttatt ttagttattg
     1561 taaccgtgtc aaaaggctta aagcacgtag gattacatct agatacagct gaaacattgg
     1621 gaatttcatt cgcgcttgcc ttacttgctt ttatcattgg atatttttat ttccgcagta
     1681 aaagctttgc aatgaaagct cgtgcagaag agaaaggctt cgctggcgtt gagaaaattt
     1741 ttagtatttt aatgcttatt acggcctgtg ctatggcttt tgctcatggc tctaatgatg
     1801 ttgctaatgc tattgggcct ctagctgctg ttgaatctat tgtaagaagt ggtggaatga
     1861 ttgaaggtaa aacgacttta gccccttgga ttctcccact aggcgcctta ggtatgatga
     1921 ttggtttagc tattatgggc aagaatgtaa tggctacagt aggtactggt attaccgacc
     1981 ttactccaag ccgtggcttt gctgctcaat ttgcctgcgc cgtcacggtt gtcattgcat
     2041 caggtactgg tttaccaata tcaacaaccc aaacgcttgt aggagcagta ttaggtgtgg
     2101 gattcgcccg tggtattgct gcacttaact taggcgttat tcgtaatatt gttatatcat
     2161 gggtaattac cttgcc
//
LOCUS       DANMGB010000247         2169 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.248, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000247 DANMGB010000000
VERSION     DANMGB010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.248"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(344..1585)
                     /locus_tag="PXG19_002505"
     CDS             complement(344..1585)
                     /locus_tag="PXG19_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL6067747.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
     gene            complement(1585..1896)
                     /locus_tag="PXG19_002506"
     CDS             complement(1585..1896)
                     /locus_tag="PXG19_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067748.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
BASE COUNT          658 a          408 c          382 g          721 t
ORIGIN      
        1 aaatgttagt ttttctgatg tctgccatct gctaggcatt atatatgcct agattagttt
       61 cctacatttg cgtttttaag gctacgcttc cttgcggata tggttgagaa aaaagtcaag
      121 tgttactaat ggttttataa gatgttggtt tgttctggtg tctgccaccg ctaggtcttt
      181 ataccctaga ttagtatcag gtctttctgg tgcctgccac cgctaggcct ttacatccta
      241 gattaatatc agattgacaa tgagccaaca actcattgcg ttattaaggt aacgctactt
      301 ttttagaaca tagactacga tgattggttc cacaagtcaa ttactataca ttaaatgcaa
      361 atttcatctg ctcttgctct tggcgtggaa taccaatttc ttttgcgaca ttttgccaat
      421 tattaatttc tttcagtact tcatcataaa tctgtacggc ttgttgctta gataattgaa
      481 aaaagtcagc aacatcaaag gcgagctgat aatccaatcg gttatcgctg tctgttatgt
      541 ttaaatgtaa tccttgagat agtggtactg ggtttaaatc gtatgcggga gataatatcc
      601 acccctcttg agcgtagata aatccgtggt tacgcaaatg atcatcagta ttcgaaatag
      661 caatattgaa tacaattctt ctccatagtt gagccaagtc aattcgagta tttgaaccac
      721 tttctgttaa aaattgagca atctcaaggt agcttgcctc atagtctccg tcataataac
      781 ccagctgggt taatgctgac gtaaaatggc gacgttttcc acaatgtcga tcaaatcttt
      841 gtgtcaaaaa agtatggtgt tcttggttaa agcgttcaat tctacaagta gccatttcaa
      901 ttttggcttg aatagccagt cgataagcta aatattccca aagagcaata tcataatcat
      961 cgtaccgact tggaaatttg gcaatccata gttgatttag ttcatctatt accgaagctt
     1021 ttggtctagc tccgcctagt gacgaccctg gtgatatcaa catatgaagc cattttaaat
     1081 aatccggatc gtccacatta tcactgcttt caagttgtat tgctgcaaat tctaattctc
     1141 ttaaggaaga cagtggtggt gctgcaagac gagtattatt gtccaaaaat ggaccattca
     1201 attcagtttt aaaacgtaaa gcccccattc tattcatatc gtgtacgcct aaaaggtaat
     1261 cactttctat tagtaactta ggtttacgat tctcttgact agctagagct gcctcccgac
     1321 gtttcattaa caatctaccc catctatcag ggcaagaatc taaaaagata tgaaaatttt
     1381 gtgtatctgt actgtattgc tctccagggt aaaggtataa gttaggatca atctgctgta
     1441 catagggtga acttaaccac tcgttatcgt agctaaaacg gaaattttct ttgcctctca
     1501 ctacatcaga agaaagcacc ccaactaatt caggctgtga aaaagtttcc caatctgcaa
     1561 acacataaat tcgtttattc atcattattt ccttaataat tcaatatctt gcaatttacg
     1621 tcctaactca tcatcctttc caacatcagt gaaatcttgt tctagaccga gaacacctaa
     1681 aaccattagg tagtatccaa tcgcaacagt tggatcacca ttcataattt ttctcactgt
     1741 tacacggcta agcccagttc tttgagccaa taatgtttga gtaaacattc tcctttttga
     1801 ggctagccta atattttctc caagttgaag caaggcattt tggtacttag gaaacagagt
     1861 tggtgatttt gttttactga gcattattat taccattttt atgttttttg gaaattataa
     1921 tatccattta tagcaattgc aagagcagtt atgtaaacag taaaataggt agagagggtt
     1981 tttcggaaaa aaatatctgg tgaagttttg actaaatttg aattaaaaga aaaaatagat
     2041 tttttcaaat aaaatcaatc taaaaaatga ttttcaggct ttacaaactt gaaagaatgt
     2101 gtaagatcta gaacgtctga aattcggacg gaaaatccca atggatgtat tggctggata
     2161 catcgtagt
//
LOCUS       DANMGB010000248         2147 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.249, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000248 DANMGB010000000
VERSION     DANMGB010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.249"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..1887
                     /locus_tag="PXG19_002507"
     CDS             <1..1887
                     /locus_tag="PXG19_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL6067749.1"
                     /translation="GKNGDIPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFER
                     MELEYSVVFGREKKRADIVIFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPI
                     GVWTNGESISYYNRRDPNYFKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKS
                     LKDLVIEMEDEVLANAGVDVFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESEL
                     KAKIQSLFDRAKNKWEGVFAESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEY
                     LINKSSKGEKGQYFTPRYVIDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQL
                     KARGLERSHLFTAEEKLPEQTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHL
                     NTLDYERWEDFTKEEEWNDVYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKE
                     TRILARYELGKNSKGKQQSKVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYI
                     RDFIAERCRILAVVGLHGNVFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKS
                     SKDNSGDKIYVKNADGTLKLDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSF
                     VGKD"
BASE COUNT          744 a          338 c          436 g          629 t
ORIGIN      
        1 gggaaaaatg gagatattcc tcatattcaa tgtcttgttc gtaaaaagga tattaagctc
       61 acacctgaag aagcagtacg ccaactctat ttaatgaatt tgcattatga atatgattat
      121 ccatttgaac gaatggaatt agaatattct gttgtattcg ggcgtgagaa gaaacgagcg
      181 gatattgtca tctttgatag agataatcct aacgctgtct atattatggt ggagctgaaa
      241 aagccgaaat taaaagatgg taaagaacaa ttaaaatctt attgtaatgc gactggagca
      301 cctattggtg tatggacaaa tggcgaaagt atttcttact ataatcgccg tgatcctaat
      361 tattttaaag atattcccga tattccgaat gctcaacaaa aactttctga tttattacaa
      421 gaacgttgga ctattcaaga tctgatagat aatgacaaaa ttgccaaaca acgtaaatca
      481 ttgaaagatc ttgttattga aatggaagat gaggtactgg cgaatgctgg agttgatgtt
      541 tttgaagagt tatttcaact tatttttact aaactctatg atgaaatgga aagtacacgc
      601 aataaaagtc gttatttaga gtttcgtaac tatggtgata ccgaaagtga attaaaggca
      661 aaaattcaat ctctatttga tcgtgcaaaa aataaatggg aaggcgtatt tgctgaaagt
      721 gccaaaatca acctttcccc ttcgcatttg gcgatttgtg tatcttcatt ggaagaagta
      781 aagctgttta attctaacct tgatgtagtg gatgaagcat ttgagtactt aattaataaa
      841 tccagtaaag gagagaaagg acaatacttt acgcctcgtt acgtcattga tatgtgcgta
      901 aaaatgctcg atccaaaacc tgaagaaaca gtcattgata ccgcagcagg aagctgtggt
      961 tttccagttc attctatttt tcacgtttgg gaaaaacaac ttaaagcgag aggattagaa
     1021 cgctcacact tatttactgc tgaagaaaaa ttgcctgaac aaacagatta tgtgaaagaa
     1081 aaagtctttg cgattgattt cgatgaaaag gcagtacgtg ttgctcgtac cctaaactta
     1141 atcgcaggag atgggcaaac caacgtacta catttaaata ccttagatta tgaacgttgg
     1201 gaagatttta ctaaggaaga agaatggaat gatgtatatg gagaaggctg gaaaaaatta
     1261 agaaaattac gtaaaactaa aaatgaaaat cgagatttcc aatttgatgt gctaatggca
     1321 aatccgcctt ttgccggtga tattaaagaa actcgtatat tagctcgcta tgaattaggc
     1381 aaaaatagca aaggaaaaca gcaatccaaa gtcggacgag atattttatt tattgaacgc
     1441 aatttagatt tcttaaaaga cggtggacga atggcgattg tgctaccaca agggcgtttt
     1501 aacaattcca gcgataaata tattcgtgat tttattgcag agcgttgccg cattttagct
     1561 gttgtgggct tacacggaaa tgtgtttaaa ccacataccg gcacaaaaac ttccgtacta
     1621 tttgtgcaaa aatggcacga tgaactttgc ccgaaagtag aggattaccc gattttcttt
     1681 gccacaatgc agaaatccag caaagataat tcaggcgata aaatctatgt taaaaacgct
     1741 gatggcacac tcaaattaga caaccatcaa cacctaattg tggagcacga tctatttaat
     1801 cacgataata gtacccaaga cggcattgca gaagccttta ttgaatttgc taaaaaagaa
     1861 aagctctctt ttgtgggaaa ggattaagcc catttgaccc tgctaaatat caggcattgt
     1921 tagatgggct agaggtgagc gaggtttatt tgagtaaggt tcgttctgca agttattcgg
     1981 aacgaatgga tagtactttc tttttgaaaa aatacttaaa ccatccgagt tttaattttc
     2041 cattatcgct gaatgaggtt tctctgatta aaagtggtac aacaccaaca gatcgagatg
     2101 ataacttaaa agagggggtt gtcttattaa aaaccaatga tattagg
//
LOCUS       DANMGB010000249         2111 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.250, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000249 DANMGB010000000
VERSION     DANMGB010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.250"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            131..2062
                     /locus_tag="PXG19_002508"
     CDS             131..2062
                     /locus_tag="PXG19_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6067750.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
BASE COUNT          647 a          454 c          468 g          542 t
ORIGIN      
        1 attatttttt aagtttaatt caacacagaa tattgaatta aactgaattt cttattttag
       61 ttcacaaagc aatggctttg cttttttatg ctaaaatacg caaaattttt aacaaaatag
      121 accgcttgca atgatctttt ttacagactt aattttaaaa cgagggcatt ccgttctcat
      181 tgataacagc tccgttacca ttcacaccgg gcagaaagtc ggtttggtgg gaaaaaacgg
      241 ctgtggcaaa tcctctcttt ttgccttact gaaaaatgaa ttacaacctg aaggtggcga
      301 tgtatcgttg ccgaaaaact gggcgatctc gtgggtaaat caagaaacgc ctgcgttagc
      361 tatttcagcg ttagactatg tgattcaagg agatcgggaa tatacccatc ttatggctga
      421 gctagatatc gcaaatgaaa agaatgacgg caaccgcatt gcgattatcc atactcaact
      481 tgataccatt gatgcttgga caattcaatc ccgtgccgct accctgctta acggcttggg
      541 gtttagcacc gaacaactgc aactgccggt gaaatccttc tccggtggct ggcgtatgcg
      601 gttaaatttg gcacaagctc tgatttgtcg ttccgatctg ttattgcttg acgagccaac
      661 caaccactta gacttagatg cggttatttg gttggagcgt tggctgagta actatcgtgg
      721 cactttattg ttaatttcgc acgaccgtga ttttctcgat ccgattatcg atcgggtgat
      781 tcatattgaa catcaaaagc tcaatgaata caccggcaat tacacctcgt ttgagattca
      841 acgtgcgacc aaaatcgccc agcagaatgc cgcttatcag caacagcaac gtaaagttgc
      901 tcatttgcag agttttatcg atcgctttaa agccaaagcg actaaagcga aacaggcaca
      961 aagccgaatt aaagcgttgg aaaaaatgga gcttattgcc ccagcctatg ctgattcgcc
     1021 gtttgaattt gaatttcgcc caccgcttgc actgcctagc ccgttattaa tgatggaaaa
     1081 agtcagtgcc ggctatgcgg aaaaaacggt gttggaatcg gtcaaactga atttggttcc
     1141 cggctctcgt attggtttac tcgggagaaa cggtgcaggg aaatccacgc tgattaaatt
     1201 attggcgggc gaacttccgc cccaaaacgg ctcaattcaa ctggcaaaag gcgtgcaact
     1261 cggctatttc gcccaacatc aggtggatac actacgtttt gatgaaagcc cactttggca
     1321 tttacaaaaa ctcgcaccgg aaaaaaccga gcaggaatta cgcaattatt taggcggttt
     1381 cgattttaaa ggcgataaag tggtacaagc tgtgaaatca ttctccggcg gagaaaaggc
     1441 ccgtttagtg cttgccttaa ttgtatggca acgcccgaat ttactgctat tagatgagcc
     1501 aaccaaccat ttagatttag aaatgcgaca agccctggtt gatgcactga cctattacga
     1561 aggctcgcta gtggtggttt cgcacgaccg ccatttattg cgtagcaccg tgaatgaatt
     1621 ttatttagtg cacgaccgca aagtggaaaa atttaaaggt gatttagacg attaccaaaa
     1681 atggctcaat gagcaaaacg ccttagccaa cgagccgaaa tccgtacttg caaaagattc
     1741 ggcaaattcg accgcttgct ctagcaccaa tgaaaatagt gcagctcaac gcaaagagca
     1801 aaaacgctta gaggcagagc gccgccaaca aaccgcccca ttgcggaaaa aaattactca
     1861 actggaaaaa gagttagaaa aagcaaccga aaaattaaat aaactcgaag caatgcttac
     1921 cgaaagcgac atttatgaag ccgaaaataa agcaaaacta actgaaacac ttgcgaaaca
     1981 gttagaggca aaaaggctgg ttgaagaaat tgaaatgcaa tggttggagg ctcaggagga
     2041 gtttgagacc atgttacgct agggttctac aagatagcgc aagcgtccac gcttgtgcca
     2101 tttaagggaa c
//
LOCUS       DANMGB010000250         2106 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.251, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000250 DANMGB010000000
VERSION     DANMGB010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.251"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..224)
                     /locus_tag="PXG19_002509"
     CDS             complement(<1..224)
                     /locus_tag="PXG19_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067751.1"
                     /translation="MEAKYNMIIELAQQQGLTHIQLTQKHCLHLAASVGKLCSGVVNN
                     AKQKIKTATGEIFTLLTIINHQIQFDEDLEL"
     gene            complement(536..611)
                     /locus_tag="PXG19_002510"
     tRNA            complement(536..611)
                     /locus_tag="PXG19_002510"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(576..578),aa:Arg,seq:tct)
     gene            892..1164
                     /locus_tag="PXG19_002511"
     CDS             892..1164
                     /locus_tag="PXG19_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas2"
                     /protein_id="HDL6067752.1"
                     /translation="MRNYLISYDLYKAGQNYDGLISYIKSHQVWAAIHKSVWYIKSNK
                     SAEQIRNELLIYLDKNDSVFVTDMNSAAWNNLTEGNGEYIRQNWMR"
     gene            complement(1142..1411)
                     /locus_tag="PXG19_002512"
     CDS             complement(1142..1411)
                     /locus_tag="PXG19_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067753.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENSLSDEDRYDIKQA
                     VLKAVGNGCSDPEMLASRCCSAIEIINRNGLNTGNGSISTSSNSV"
BASE COUNT          589 a          400 c          395 g          722 t
ORIGIN      
        1 agctctaagt cttcatcgaa ctggatttga tggttaatga tggtgagtaa tgtaaaaatt
       61 tctcccgtag ccgttttaat cttctgtttc gcattattaa cgactccaga acatagtttc
      121 cccactgatg cagcaagatg aagacagtgt ttttgagtaa gttgaatatg ggttaagcct
      181 tgttgttgtg ccagctcaat aatcatgttg tatttagctt ccatttttcg ttcctttttt
      241 agtcaaaaat ctgaattttg ggtgtaaaaa gcccctccgc agtaattact taaccttgag
      301 caactctaca ggcgttatat taaggagatg tttctgatgg cggatttaat tcttgaggag
      361 caatccaatc atcgctaact tcccagattt cttcttgccc tgcttgttca gggcttttta
      421 acttaataag catttgatac ctcacattgt tttattagcc attcaaaacc gctctacacg
      481 gtaggtttcc acttcgtagg ctcgtcatcg atgatgtgcg caaagcggtt ttggatggcg
      541 accgcagaga gattcgaact ctcgacccac tgcttagaag gcagctgctc tatccactga
      601 actatgcggt caaagtaccg ttgcttaacc ccaacggcag ggtttacttc aatctaagga
      661 ggatggcttt caccatctca aaccgctctc tagtccattc gtttcgctgg ataacggcac
      721 tttgggaaaa catacgcaaa aaaccaagtg aggttatcgg gctaactctt tgttgagagc
      781 ggtttgagat ggtggctctt ttatacttgt gagccgtcaa gtttccttat tgtctctcac
      841 aacactaagg aatataatta aatctctcac agcacaaata aggattcttc tatgagaaac
      901 tatttaattt cttacgattt atacaaagct gggcaaaatt acgatggatt gattagttat
      961 attaaaagcc atcaagtttg ggctgctatt cataaatcag tttggtatat caaatctaat
     1021 aaatctgcag aacaaattcg taatgaactg ctcatttatt tagataagaa cgatagtgtc
     1081 tttgttacgg atatgaatag tgctgcttgg aataatctga ctgaaggaaa tggtgaatac
     1141 attagacaga attggatgag gtagatatac tcccattacc agtgtttagc ccatttctat
     1201 taattatttc gattgcggaa caacatcgtg atgcaagcat ttctggatct gaacaaccat
     1261 tccctacagc cttaagtacc gcctgtttga tgtcgtatct atcttcatca gataggctat
     1321 tctctactac ttttaattcc aaatctttag ggcttcctag ttgttcattt aaaataacaa
     1381 ctttcgcaat ttcaaaattt ttgtttttca taatttacct ctagttaaat attccaaaac
     1441 acactttctc aaatatgctt tggaatttga aatgccgtct ctccgagctg tcacgcaatt
     1501 ttagagctgc gtttgcacaa tttgaatttc ggttactccc ttgtgtctca atgtacacgc
     1561 ccagactttc acctaaaccg ctataagggt atatgcttgt attcctttgc ttgcaccaaa
     1621 gggcataacg ctttgaagta gtgggcgttt taagggctgc ctccgacttt cgtcttccta
     1681 cttttcacca ttaggcttaa agcggttttg aatttgattt ttaaagagca ttgagccgta
     1741 gctcgttttg atgggtgcat tataccttat ggtaaatatt gttgtaaata ccaaaaggta
     1801 tgttaaataa ggtaaaaata aataacaaaa aggtaatttg ttgattttaa aaggaattta
     1861 tttttagaaa ggttgtttga ttgcttaata aataaacaga ttgagttgca agcggtcgtt
     1921 tttgaagaga attttgcaga ttttaggcaa gagaaaaccg ccctcctggc ggtttattca
     1981 aggaatatta ttttatcttt tgaattgttg tagtaacaga tcgagtttat tatcaatccc
     2041 atctattttc ttatccatat tgcctagtcg ctgctcaaca ttgtctagtc gttgttcgac
     2101 attatc
//
LOCUS       DANMGB010000251         2096 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.252, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000251 DANMGB010000000
VERSION     DANMGB010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.252"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..609
                     /locus_tag="PXG19_002513"
     CDS             <1..609
                     /locus_tag="PXG19_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6067754.1"
                     /translation="AEEAKKIAEAKGIGNKEYKDGLNELEEKNETGKNGEEIRTHGYL
                     YNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLPTEGKATYKGEAFDSHGNNSN
                     SVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIKNDSIIASAHQKYNDQAVGNG
                     SYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTREEQK"
     gene            658..2052
                     /locus_tag="PXG19_002514"
     CDS             658..2052
                     /locus_tag="PXG19_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6067755.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT          695 a          359 c          479 g          563 t
ORIGIN      
        1 gctgaagaag caaaaaaaat tgcagaggca aaaggaattg gcaataaaga atataaagat
       61 ggattaaatg agttagaaga aaaaaatgaa acaggtaaaa acggagaaga gattcgaacc
      121 catggttatc tctataacag ccattattcc gttgtaactg ccaaaatgaa acaaacttta
      181 caggaaaatg gtcgtcaaat ggaacctacg gttgaagtga aagggcttaa aactgagaat
      241 ttaccgacag agggcaaagc aacatataaa ggagaagcct ttgattctca cggtaataac
      301 agcaattcag tagtaggtgg agaattaatc tataatgttg atttctctag tcgtaccgga
      361 tcaggtctag ttaaaaatgt acagggcggt tctatcgagt tagcacaagg cgaaataaaa
      421 aatgatagta ttatagcttc tgctcaccaa aagtataatg atcaggctgt tggaaatggt
      481 agttacaata tccaattctt tggtccaaat gcagaagaaa ttggagggaa aattgagctt
      541 aatggtgagg gcgaaggctc aatgaagcag atgttaggta ttgcaggaac ccgagaagaa
      601 caaaaataac atttaatacc caatgccgtt taatcttaaa cggcattctt ttttactatg
      661 tataaaaaac attttctatt tttacttgtt tcgcctttag taatggcgga aacggttgag
      721 tttcagcaag atcccaaaga gtttgatggg cagcgacaag cggttaaatt tgagcaagaa
      781 attgcaaaaa aggatttaaa attaaccgct tacttggagg aagataattc tcttaaaggt
      841 attgaacagc acattaacca agcgattctt agacaagatt gggcgaagct ggaaaggctg
      901 cttggcgatt atgcaaagca agagcaattt gatccgctac ttttagacta tgctttggcg
      961 gcattggctt atgctaaaaa agattatcgc tctgcggcgt tttattatca gcagttgctg
     1021 aaaaaacagc ctgatttaac ctaccctcgt tttgatttgg ctctgatttt aaaagaggat
     1081 tatcgctaca gggaagcaga gcaagaattt aagcaactca aaaccgatga tttacgcaat
     1141 gcggtgaaca gtgcgttggc tcaaatagag gaggaagaga gctggaagcc ggatttttat
     1201 ttgcaatata ctcaaaccaa caatgtgaat aatgcttctt cgtcgccaac ggtaaatgta
     1261 aacgggcgga tttttattaa agaatcagac agcttgccgc agtcggcaaa aggcgtaaga
     1321 tatggcgttg gcttgagtaa aatgcgaaat atcggcggta atcattttgt gggagtcgat
     1381 cttggctata acggcgttta ttactggaat aaccacgatt atagcgaaca gtcggtctca
     1441 ctaacaccaa aatatagcta cagaacggca acttatcgta tcggggtttc gccctttatt
     1501 gagcagaatt ggctgggtag ctcacggtat aactatcaat ttggtagcag tatcaatgct
     1561 gttaaacttt ttgaacgagg gctgatttcc ggctcattca gccatctgca aaaacgttat
     1621 agtgaacagc atattgccga ccgttacaat ggttatcgca accaactcac gctaggtacg
     1681 caatggcaag cggtcaaaaa ttggcgattt tttgcaaatc ttaacgctag ccgtgaaatt
     1741 acccgtgaga aagctcaatc ttccaataag tggctggcga ccattggcgt aatttaccaa
     1801 accccaagct gggcaagttc ggtaagtgtc ggatatggca agcgttattt tgctgataaa
     1861 cattatctgt ttggctataa acgccaagat aaggaatatc aagcgaatgt ggcggtgtgg
     1921 aatcgaagtt ggcactggca agggattgtg ccgaaattga atttccgtta tcaaaaaatc
     1981 gatagcaata ttgccgattt ctactctcgt agcaataaag aagtctttat gaccttagag
     2041 aaactatttt aaggctgtgt atgaatgtcg gggagaaaaa ttttctcccc gatatt
//
LOCUS       DANMGB010000252         2089 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.253, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000252 DANMGB010000000
VERSION     DANMGB010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.253"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(57..749)
                     /locus_tag="PXG19_002515"
     CDS             complement(57..749)
                     /locus_tag="PXG19_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6067756.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            complement(767..2041)
                     /gene="nadR"
                     /locus_tag="PXG19_002516"
     CDS             complement(767..2041)
                     /gene="nadR"
                     /locus_tag="PXG19_002516"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL6067757.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
BASE COUNT          637 a          398 c          380 g          674 t
ORIGIN      
        1 aatttatgaa tgggaagggt aaaatgacaa tttgtttaat tcagtcaaat ttttggctat
       61 ttctctcgat catcaacacc taaaattaga taatttccat taatatccgc taggctacga
      121 aagccgatat tataaatagc acattctctg ctgacattta gattgccata attaaaatta
      181 tcatggtagt ggccatggaa aattttgctc gcccctaatt ttcttgctag ctggttgatt
      241 acagagaagc cttgagggtg tggctttggt gcttcgtgtg taattaaaat atcggctttt
      301 tcattttcca atgcttcaaa atcagaaggg aagatcgaag agcggtgcct taatggaata
      361 ccaccacgcc aaattttttc cggagcagag tattggcaaa aatggatggg atcaaaaaac
      421 attggacgat tgggcggcat ccaaatatga cctcggaaga cccctccaat acctgcaatt
      481 tttattcctt gaatgtcaac tactttaccg tgaatattgc gttctttcca gctactattc
      541 caaatagcat caaaggcagc aacggtttta ctgtcatggt taccatgaat aaaccaaata
      601 tcacaatact gcgaaagccg atctaattca tcaggagtag tcaattgaag atcgcctaga
      661 ataactaaag ctacctcctc cgtctgctgt tgtagaatcg gataaagatg ctcgtagcta
      721 ccgtgtggat cgcctgcaaa aagtatcatg ttatttcctg tggcagttat tcaaattcgt
      781 gaatattata ttgcttaaac tgtaatggga ttggttcttc atttaaaata gcttctacca
      841 cctctttggc ttgattgtag cgatccaaat aacttggaga ttcaatttta atataaggaa
      901 tatggtgttt ttctagtagt tttttcagta ggtgttgaaa ctgttgacgc tgttttttcg
      961 atcctaaact gcgtaaacca tcggctaccc attttgtatt gttagaaagt aaaatcgtca
     1021 catcaaaagg atattcgcgg atcattgaat ccagaaacgg gtgagccttc ccttcatact
     1081 gaatacagaa cgcttgagtt gtgatgtaat cggtatcaat aatagccact ttatgagcat
     1141 gtttcatggc ataatcaacg tagcgttgat gtccaagcac catttgcgga tagtcggaat
     1201 attgcattgc ttgttcattg ccaccaagtt gctcaaacac aaactcacgc ccatattccc
     1261 aagcagaggt agtgttaaat acattcgcta atttgctcac caacactgat ttaccactgc
     1321 tttcaccacc taaaatcgca atagttttaa caaagaaagg acgaacttct ttcggaataa
     1381 agcgccagta ttgaaaagga ttattacgaa tttgtgttgc tgaaatatta aaggattcac
     1441 gagtaggatc gacaagttga acttctagat tcaaatattt ttcataagat tctttatctt
     1501 gaatttcact actaaaaaca atagtaggat taatgctttt ttcttcaaat agcgctttaa
     1561 cacgaccaga ccaatcttcc cagccatttg gatagctcgg aataccgtct tcaactaaat
     1621 ggtgaataaa gatctgtttt tgttggtatt taaaaatttg ctgtacccag cgtagccgat
     1681 cttcatttgt cggcattcgt ttcattttac tttcctggaa aagacgtaaa tcccgttcag
     1741 aatcggtaca aacaataaca tgtaaaacat ctactttact aaatgcttca tagatcatat
     1801 taatatgacc tgtgtgaata ggatagaatt tgccaaaaat aaccccggaa cgctggttgc
     1861 tatcttctac gatatctaaa acggaatgca aggctttaag cttattggcg cttggatttt
     1921 tgatttttcc gcttactaac tgattaaaat aagctcgggt taccccagct tgttcacaaa
     1981 tatcattcac tttgagttta agctgtttgc gcttttgttg aagataagca aaatctgtca
     2041 taatgattcc ctcgattttt tgatgattat catatagtaa aatgtagca
//
LOCUS       DANMGB010000253         2077 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.254, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000253 DANMGB010000000
VERSION     DANMGB010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.254"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            166..606
                     /locus_tag="PXG19_002517"
     CDS             166..606
                     /locus_tag="PXG19_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6067758.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLSNIRTVTPKKGDEFLACTIGAL
                     IGEAGEGAKAEYRYFDCKVVGEAAIDLVNRAKASVEADKKVLISFVLADLWTDTFTYQ
                     KDGKNHKKGDTGVMLKARLIRIKSVKIDGVVKYQEPEKIDAQSE"
     gene            713..1360
                     /locus_tag="PXG19_002518"
     CDS             713..1360
                     /locus_tag="PXG19_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL6067759.1"
                     /translation="MTINTYAKFAPTVFVAKCPEAHTKGEIITLTSKYGNETEVQIHN
                     LVKQDNEHYYYSFTRCDGMDSQSFAQQKAERYQGYADNATKRSQSWANAANEGLEFLR
                     LGEPIKIGHHSEKRHRNLIERNARRMDNALSEMNKTESYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKEKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            1384..1791
                     /locus_tag="PXG19_002519"
     CDS             1384..1791
                     /locus_tag="PXG19_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6067760.1"
                     /translation="MNRQGVYINGKQVFDSKGKEINSIEIIGSTVQTVVGINKGSISM
                     VSSNNALIVDGQTIAFEPSPTIHIEVFGNITNLNSGAGNVNIKGDVSHIETVSGDVNV
                     DGTVTSDVRTVSGDIRCKTIAGKVETISGDIYR"
     gene            1869..>2077
                     /locus_tag="PXG19_002520"
     CDS             1869..>2077
                     /locus_tag="PXG19_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067761.1"
                     /translation="MKDILLDFDDTSCYLGDWEEILEEYNDRVRVEDFWHYAKEFETV
                     PHLGNLYQEHVILKLIARFCIELDI"
BASE COUNT          686 a          360 c          437 g          594 t
ORIGIN      
        1 agcattccga aagggaactc cacaatattg tgggaatgcc gattaaacct ctaccatttc
       61 ggtgaattta catcgaaatt tcatttaact tccaccttgc ggggaacatt tttcccgtgt
      121 tgggtaagga tgtttctccg cttttttact ttggagaaac agactatgac aactcagact
      181 tctactcaaa aaaattactt caatcttcac acaaccggaa tcggctatct gagcaatatc
      241 cgcacagtga ctccgaaaaa aggtgatgaa ttcttagctt gtactattgg tgctctcatt
      301 ggagaagcag gagaaggtgc aaaagcagaa tatcgctatt ttgattgcaa agttgtgggc
      361 gaagctgcga ttgatttggt caatcgggca aaagcctctg ttgaagctga taagaaagta
      421 ctcatctctt tcgttttagc tgacctttgg acagatactt tcacctatca aaaagatgga
      481 aagaatcaca aaaaaggtga tactggtgta atgctgaaag ctcgcttaat tcggattaag
      541 tctgtcaaaa ttgatggagt ggtaaaatac caagaaccag aaaaaataga cgcacaatct
      601 gagtaatttt acctaagccc gacattttat gttgggcttt actttatgtc ccgtagggaa
      661 atgctccctg cggtgtgttt cccttcattt ttacaatttt aggagaaaca ctatgactat
      721 taacacttat gcaaaatttg cacctactgt tttcgtagca aaatgccctg aagcacatac
      781 caaaggtgaa attatcactc taaccagcaa atatggtaat gaaaccgaag ttcaaataca
      841 taacttagtg aagcaggata atgagcatta ttactattct ttcactcgtt gtgatgggat
      901 ggatagtcag tcatttgctc aacaaaaagc agaacgctat caaggctatg cagataatgc
      961 aaccaaacgc agccaaagct gggcaaatgc agctaatgag gggctggagt ttttgagact
     1021 aggtgagcca ataaaaattg ggcatcatag tgaaaaacgc caccgtaacc tcattgaacg
     1081 taatgcccgt cgaatggata atgcgctttc agaaatgaac aaaacagaaa gctatgaatc
     1141 ccgtattgca tattgggaaa aaatggcagg gaaaattgac ctttctatgc cggaaagtct
     1201 ggaatacttt aagtttgaat tggataaagc caaagaaaag cataaagaat tgaaggacaa
     1261 ccctgagaaa cgagagcatg gttattcact gacttatgct aaaaaagcag ttaatgaact
     1321 tgagaaaaaa gtgaaattag ctgaattact ttgggcataa tttttacata gaggattatt
     1381 aatatgaatc gacaaggcgt ttatatcaat ggtaaacaag tctttgactc taaaggcaaa
     1441 gagattaata gcattgaaat cattggtagc acagtgcaaa cagtcgttgg gataaataaa
     1501 ggatctatct caatggtctc cagcaacaat gcattaattg ttgatgggca aacaattgca
     1561 tttgaacctt ctccgactat ccatattgaa gtatttggta atattaccaa tctcaattca
     1621 ggagcaggaa atgtgaatat caaaggtgat gtaagccata tagagactgt gagtggtgat
     1681 gtgaatgttg atggtactgt gacttcagat gtaagaacag taagcggtga tattcgctgt
     1741 aaaactattg caggtaaagt cgaaaccatc agcggagata tttatcgcta atttttgcta
     1801 cttaccctat cgggaaacat tcccgatagg tgtgtttccc cacttttatt taaattttgg
     1861 agaaacatat gaaagacatt cttttggatt ttgatgacac ctcttgttat ttaggtgatt
     1921 gggaagagat actagaagaa tacaatgatc gtgttcgagt tgaggatttt tggcattacg
     1981 ctaaagaatt tgaaaccgta cctcatttgg gcaacctata ccaggagcat gtcatcctga
     2041 agttgattgc tcgattctgt attgaactgg atattga
//
LOCUS       DANMGB010000254         2049 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.255, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000254 DANMGB010000000
VERSION     DANMGB010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.255"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXG19_002521"
     CDS             complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXG19_002521"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL6067762.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWEESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT          534 a          516 c          370 g          629 t
ORIGIN      
        1 cacgcattct atttcctata ttctaaaaat aatagagtat tttatacttt agttaaatac
       61 tcgctgcttt atattaaagg gcgtatttta tacgcccaat tttgttattt ataattaagc
      121 ctttacattc gcttttaaga acgcaagtaa gctctctttg gcgatcatct gtttttcacc
      181 gctgcggcgg tttttgtatt cgatttcgcc gttctcgagg tttttctcac caataaccac
      241 catatgcggc acaccgataa gctccatatc cgcgaacatc acgcccgggc gttctttacg
      301 atcatcaaaa atcacctcaa cgccttgagc ttttaagtta gcgtataact cttcagcgaa
      361 tgcctgcact ttttccgatt tgtgcatatt catcggcaca atcgccaccg taaatggcgc
      421 catttcatca caaggccaga taataccacg atcatcataa tgttgttcaa tcgcagctgc
      481 caccacacgg gtaacgccga taccgtaaca acccattgtc atcactagcg gtttaccgtc
      541 ttcaccttgc acagtggctt tcattgcttc tgagtatttt ttgcctaatt ggaaaatatg
      601 ccctacttca atacctcgtt tgatttgaag tgtgccttta ccgtccgggc ttgggtcgcc
      661 ttccaccaca ttgcgtaaat ctgcaatttc cggcacagca acatcacgct cccagttcac
      721 gttaaagtag tgtttgccat caatattcgc accgcagcca aaatctgaca tcaacgccac
      781 tgagcggtca ataatcaccg gaatcggcat attcaccaca cctaacgagc caacaccggc
      841 accgattttg gctttaattt ccgcttcatc ggcaaactca agcggatcag ccaccaacgg
      901 gtgtttttga gctttaattt cgtttaactc gtggtcgcca cgaatcacta acgcaattaa
      961 cggttgctct tcagttgccc ctttcaccac taaggttttc accgtttttt caatggctaa
     1021 accgtgattt tctactaatt cattgatggt tttcgcattt ggcgtatcca ctaattgcat
     1081 ttctgccgtt ggtgcttggc gttcacccac cgcaaccgct tcggctaatt caatattggc
     1141 agcaaaatct gattcggttg aaaataccac atcatcttca ccgcttgagg ctaacacttg
     1201 gaactcgtga gaggctgaac cgccgataga gccggtatct gcctgcaccg cacggaaatc
     1261 taagcccaaa cgggtgaaaa tattgctgta aacctgatac atcacatcat aggtttcttg
     1321 caggctctct tgtgtggtgt ggaaagaata ggcatctttc atcacaaatt cacgcgaacg
     1381 cattaccccg aaacgagggc ggacttcatc acggaatttc gtttgaattt ggtataaatt
     1441 cagcggaagt tgtttgtacg aagaaacttc acggcgaacc aagtcggtaa tcacttcttc
     1501 gtgagtcggg ccaagcacga aatcacgctc gccacgatct ttaaaacgta ataattccgg
     1561 gccgtaatca ttccaacgac cggattcctc ccataattcc gccggctgaa ccaccggcat
     1621 taatacctcg atagccccgc ctttgttcat ctcttcacga ataatatttt ccactttttt
     1681 caacactttg atcccggtcg gcaaccagtt gtataaacct gacgccatcg ggcgaatcat
     1741 tccggcacgc aacattaatt gatggctaac tacttgtgca tcattcggca tttctttaag
     1801 ggttgaaaat aaatattgac ttgtacgcat tgctattcct attcttttta aactttgaaa
     1861 cctgaaaaaa tctgcttatt ttaaaacaaa gcggttaaat tttcaggaaa ttttgcaaaa
     1921 tcctataaaa aaataaccgc ttgtaagcgg ttattttgtt ttaactaagg gtattttctt
     1981 aaactgtgta tgcttaattt tctcgttcaa tttgctcaat aatctcttgc cattcggcat
     2041 ttgcttgtt
//
LOCUS       DANMGB010000255         2043 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.256, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000255 DANMGB010000000
VERSION     DANMGB010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.256"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXG19_002522"
     CDS             complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXG19_002522"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL6067763.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(360..2012)
                     /locus_tag="PXG19_002523"
     CDS             complement(360..2012)
                     /locus_tag="PXG19_002523"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL6067764.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          587 a          444 c          428 g          584 t
ORIGIN      
        1 aaataaagag caataagtga aaaaaaagag ttgaaatttg aagaaatgaa taaaatcaaa
       61 aggatagcga atgataaatt ttaagcataa aaaagccgtg tattttttta cacggcgaat
      121 gaaaagtctg attaattgat ttcaatgata tcaaacagtt tttctaattg atggcttaaa
      181 agagagagtg gacgtttact tgctaatgta aaatttaggt taaaggcgct gtctgttgat
      241 tctacattta agcatttcac ctcaaaacca cggtgacgta taacccgtaa aatacgctct
      301 aaggtttcag ggcgtttgtt agctttaagc gttaattgat attcttccat cttattctcc
      361 tatacctcat cgtctaacat atcggcatta cacgcccccg gcggtaccag tggccaaacg
      421 ttatcttcct gtggaataca aacgtgaagt aagtaagccc ctttggcatt gaacattctg
      481 tctattgcat ctgacacttc gctcgctttc tcaattcgct caccgtcaat atcaaaggct
      541 ttcgccaaca acacaaaatc agggttatca tctaaaatgg tttggctgtg tcgcccgtgg
      601 aagaacagcg attgccattg gcgaaccata cctaaacgtt ggttatccag taataggatt
      661 ttgaccgcta aatcagctct tttaagcgtg ccgagttctt gaatattcat cataatcgag
      721 ccatcaccgg taattaaaat aacctgatct tccgctcgag ctttgattgc cccaatcgcc
      781 gcaggcaagc caaaacccat agagccaaaa ccggcagagg tgatatagtt tttcggatcg
      841 tgataagtta aatgttgtgc cgaccacatt tgatgctgcc ctacatcggt agtgacgatg
      901 ctgtttttgg ctttccgctg tgaaagcgtg tgtaataacg ccacggcatc aatattgcca
      961 tcaccactat tttcttgata ttgaaagtca aattgctgct ttaaattacg cacatcttca
     1021 cgccatggtt caatatctaa cggttgagcc aagtaattca cggcttcaat caaattccct
     1081 tttaaggcaa cttgtgcttg acggagcttg ttgatttccg cattgtcgat atcaatgtga
     1141 atcactttag cgtgaggggc aaaagtgtct aatttgccgg taacacggtc atcaaagcgg
     1201 gcaccacagg caatgagtaa atcacactct tgtaccgcgt aatttgctgc ttttgtgccg
     1261 tgcataccga tcattcccat atagagcgga tcggttggat cgatagtgcc taaccctttt
     1321 aaggtagaaa cagacggaat atttgcaatt tttacaaaat ttctgaccgc ttgtacacca
     1381 tcagccatac taacgccacc gccgacataa agtaccgggc gtttggcggt ggctaataat
     1441 tgtttggcaa ccactaattt gttgggatct tgtgcatcgg caggttcttt aggataaacg
     1501 ataggcagag ccgaagtttg agctagttgc acatcacgtg gaatatcgac cagcaccgga
     1561 ccaggtctgc cactttgtgc aatttggaat gcgagggcta aaatttcagg gagctcctca
     1621 atattctgaa caataaaact gtgtttagtg caagcgagtg acaaacctag tacatcagct
     1681 tcttggaagg catcagtgcc gattaaatgg ctggcaactt gtccggtaat tgctaccaca
     1741 ggaatagaat caagtgcggc atcgcctaaa ccggtgatta aattagttgc cccagggccg
     1801 gaggtcgcaa tacaaacccc tactttacct gttgcacggg cataaccgat agctgccatt
     1861 gcagcacctt gttcattgcg gcaaagtaaa tgatctaagc ctgaatcata aattgcatca
     1921 taggtaggca taatagcccc gcccggatag ccaaaaagtg tcgttacccc gtgagctttt
     1981 aaactctcgg tgataaatct tgctccattc atggatgttg tgtccttaat atttttatta
     2041 ttt
//
LOCUS       DANMGB010000256         2028 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.257, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000256 DANMGB010000000
VERSION     DANMGB010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.257"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(52..1935)
                     /gene="htpG"
                     /locus_tag="PXG19_002524"
     CDS             complement(52..1935)
                     /gene="htpG"
                     /locus_tag="PXG19_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL6067765.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
BASE COUNT          472 a          497 c          469 g          590 t
ORIGIN      
        1 atatattgaa tatggaaaaa cggaaaccta gatttccgtt tttagtaatg gctagcccaa
       61 caatttattt acccgtttaa taaaggctgt cgggttttcc aacgtgcctc gttcagcaag
      121 cagagcttgt tcaaacagca gttcaatcca atcggcgaac tcggcttcat cggcaagatc
      181 agctactttt ttcaccattg ggtgatctgg gttcagctca aaagtatatt tcacttctgg
      241 tgcttgttgc cccattgctg caaacagttt tgccatttgg gtggtcattt catcgctgtc
      301 agtggaaacc actgccggtg tgtcggttaa gcggtgagtc agcaccacgt ttttgacccg
      361 ttcaccaaag tagcctttcg cccgttctaa gaacgaacca aactccgcct gttgggcttt
      421 ttggctctct tcttcctgct tgtcggcaag ctcgcctaag tctaagtccg acttggtaat
      481 gctttgtagc ggtttgccgt caaactcggt gaggtggcta accaaccatt catcaatgcg
      541 gtcagaaagc agtagcacct caatgccttt tttgtggaac agctctaagt gcgggctgtt
      601 tttagccgct tggtagctgt ctgcggttaa gaagtagatc gctttctgcc cctctttcat
      661 tcttgcaata taatcggcaa aactgaccgc ttgttcgctg tcatcacgct gggtggaggc
      721 aaaacggagt aagcctgcaa cctgttgttt gttggcaaag tcttcgccca cgccctcttt
      781 aagcaccacg ccgaacgctt gccagaattg ggcatatttt tcggcatcgt ctttcgccaa
      841 tttttccagc agttgtaacg cacgcttggt taaggcagaa cggagcgatt gggtaacttt
      901 attctcttgc agaatttcac ggctgacgtt gagcggcagg tcgttggtgt cgagcaagcc
      961 acgcataaaa cgcaagtagt tcggcataaa gacttccgca tcgtccataa taaatacacg
     1021 ctgaacgtag agtttcaagc cgtgtttttg ctcgcgttgg aacagatccc acggggcttt
     1081 gctcggcaca tacagcaagc tggtgtattc ttgcttacct tcgactttat tgtgcgacca
     1141 aatcagcggg tcggcaaaat catggctgag gtgtttgtaa aattcggtgt actcctcgtc
     1201 actaatctca ttttttgagc gtgtccaaag cgcttgagct ttgttaattt tttcccattt
     1261 ttgaccgctt gctttgccct cgtcatcgta ttcattggtc tgaatttcca ccgccaggcc
     1321 gatatggtcg gagtatttgc cgataatctc acgcaaacgc cattcgttta aaaactcttt
     1381 ttcgtcctca cgcaagtgaa gaatgatttc cgtgccacgc tcttttttct ccagatcggc
     1441 aacggtgtaa tcgccctcac cggcagattc ccaaatcacg ccttgctcgg caggcactcc
     1501 ggcggcacgg gttttgactg tcactttatc cgccacgatg aaagaagagt aaaagcccac
     1561 gccgaactgc ccgataagct ggctgtcttt ggcttgatca gtgccgagtg cgttcaaaaa
     1621 ttctttggta ccagattttg caatcgtacc gagatggtcg atcacctgct cacgggtcat
     1681 accgataccg ttatcggcaa tcgtaatcgt accgagtgtt tcatcaacag agacacgcac
     1741 acgcagttcg ccatcacctt catacaaagc cggctcggaa agggctttaa accgcaattt
     1801 atcggcggcg tcagaggcgt tggaaataag ctcacgcagg aaaatttctt tgttggagta
     1861 aagcgagtgg atcatcagtt gcaataactg tttcacttcc gactggaagc cacgggtttc
     1921 ttgattattt gccattgtgt attcctttat tcattaaaaa acagggaata gatggggcaa
     1981 gtggtcagat tttcaagatt ttttgcaaaa tatctgttgc caaatagc
//
LOCUS       DANMGB010000257         2007 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.258, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000257 DANMGB010000000
VERSION     DANMGB010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.258"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(59..349)
                     /locus_tag="PXG19_002525"
     CDS             complement(59..349)
                     /locus_tag="PXG19_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067766.1"
                     /translation="MNNLSEFKLRYINNPYSNKDTFFIFDELSILLKSLTSDELKKIG
                     TAKNLADRQLNKQRKRCKRYVSEAYRLVEDNKEPYSKFFNHDGITAYNIKAF"
     gene            complement(399..1163)
                     /locus_tag="PXG19_002526"
     CDS             complement(399..1163)
                     /locus_tag="PXG19_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6067767.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
     gene            complement(1132..1611)
                     /locus_tag="PXG19_002527"
     CDS             complement(1132..1611)
                     /locus_tag="PXG19_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL6067768.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
BASE COUNT          557 a          383 c          375 g          692 t
ORIGIN      
        1 gatcataata cacattaaag aggtttcagg acgatataaa aaaggctctc taaatagatt
       61 agaaagcctt gatattgtat gcggttatcc catcgtggtt gaaaaactta gagtaaggtt
      121 ctttattatc ttcaacaaga cgataagcct ctgatacata ccttttacat ctttttcttt
      181 gcttattaag ttgtctatct gccagatttt tagctgttcc tattttcttt aattcatcgg
      241 aagtcagtga ttttaatagt atgcttaatt catcaaatat aaaaaatgta tctttattag
      301 aataagggtt attgatatat cgtaatttaa actcagaaag gttattcata tttgtacacc
      361 tctaattaaa caagcggtca aattccgcca aaaatttact aaatccccgt tgagcagctt
      421 tctacataat ccgcccattg ctgcattaca tctacacgct gatctaaata atcagaacgg
      481 ttataagcct ttcgggtttg gtctttgata acgtgagcta aacaagcctc tactacatca
      541 taattgacta actgctcatt caaataggtt gaggcaatag accgcatacc gtgagccgtt
      601 agagtgccgg catagcctaa taagcctatg gctctgttgg cggtttggct gttcatcggt
      661 tggcgtggtt tcatttcgct ttgaaaaaca aatgggctat tccctgtgat ttttcgcatt
      721 ctttctaaaa tttcgaccgc ttgccgtgaa agagggataa cgtgagggcg tttcatcttc
      781 attctttcgg ctgaaatggt ccacgttttc gcctctaaat caatttcact ccacaacgtt
      841 tcgcttgcct ctcgtgagcg tgtcattgtt aatagttgcc atttaatcaa catcttagtt
      901 tgaaatgata ggttgtaatc acgcaatgca gctaaaaatt gaggtagctc ttttgggtgt
      961 atcgttgggt tatgttcaga tttcgctacg ctaaaatttg agcctacatt ttggcatttg
     1021 ttaaactcga taacgtccgc atttaccgca aaattcatca cttcattaag tagcctaatt
     1081 gctcgtttaa gggtgtcgcc tatgcctttt tctttagcag gctctaaagc attaataact
     1141 agttttggcg tgatgtttgg aatagagtag tcggcaaggc aaaagatact tttcaaggat
     1201 tcgccaattc ttcttcagcg ttaaggcttg aagttcgcca ttttttacac ggctttcgca
     1261 tttatcacgc catttcaagc agactttata aaaggtgttt tctatttcgg ctaacgcttc
     1321 agcctctaat ctttggcggt gttcgagtgg gtcgatattt tccgctagta atgccctata
     1381 ttcttctcta atcgttcttg cttgggctag ggtagtttcg gggtaactgc ctatgcctaa
     1441 atcgctctct ttgccggtaa tcggcttttt atacctaaac cgccataact tcgagccgtt
     1501 tttcttaacc agcaaaaaca gccccttgcc gtccattagc ttgtagtctt tggtttgagc
     1561 ctttgcgttt ttgatttgag tgttatttaa ttctgtggta actctagcca taaaaattta
     1621 cctaaaatcg cattgtgctt tatcagaatc ataagggatt taagggtatg ggtttcatac
     1681 ccttttacgt tataccctca aatataccct taaaataagg ggatgtaaac gcaagaacac
     1741 gaaagaatac gaatgaagaa ataatttaaa attgctctaa agccagtatc atcaatggtt
     1801 ttgcgtaaga atgcgaatga agaaataaga gtggaaaatt taagttggtc ccagcctcct
     1861 ctgaactcgc ttataactta ttgatttata aagagataaa ataaactcta caaaaatagg
     1921 gatcatttta gggatcattt acataaaagc tatttatttt cgtttataaa atgttcattt
     1981 gtgcggctag gttggtttgt ctttcct
//
LOCUS       DANMGB010000258         1970 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.259, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000258 DANMGB010000000
VERSION     DANMGB010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.259"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            311..1009
                     /gene="aphA"
                     /locus_tag="PXG19_002528"
     CDS             311..1009
                     /gene="aphA"
                     /locus_tag="PXG19_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL6067769.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1190..1951
                     /gene="udp"
                     /locus_tag="PXG19_002529"
     CDS             1190..1951
                     /gene="udp"
                     /locus_tag="PXG19_002529"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL6067770.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
BASE COUNT          628 a          345 c          421 g          576 t
ORIGIN      
        1 atactcttga tacacgtaaa tattatggat cagtatttaa tgaattatta gaggagccat
       61 ttttattaag cgaatatgat gcctatcaat ttacgaatga ggtgattaaa tttcattcag
      121 aagaaagcct taaagcttgg ggaggttgct tgatttggga acagaacaat ggctcataag
      181 cgttaagcgt aatcgtttgc ttgtgatcat attcacaaaa taaggttttt gtattagcta
      241 agagtgccta ataagattaa aataggtatg gttaatcata tggaggtatt ttataaaatt
      301 tacattaaaa atgacggcag cgacaatgtt tgcatctctt attgcttttt cagcacaagc
      361 aggcggacca aaagtagctt atacccagcc gggaattgat atgcgaacac atgaagcaca
      421 gcaagcgcca attcattggg tatctattga gcaaattaaa gaaagcatca aagatttacc
      481 ccctatggcg gtaagttttg atattgatga tactgttgct gcaactagcg gttgcttcca
      541 ctacggaaag caaaaatatt cgccagacga tttcagctac ttaaaaaatc aagatttttg
      601 ggacgaaatt aatgctggct gtgataaata ttctttgcca aagcaagttg ctattaattt
      661 aataaaaatg caccaagaac gtggtgatca agtttattta attacggggc gtaccgcagg
      721 taaaaatgaa caagttacaa cgattatgca aaagtatctt ggtattaaaa atatgcaacc
      781 ggtaaatttt atggggggga aagcacattc aacaaaatat gataaaaccc ctgcgattat
      841 tgaacataag gtgcaaattc actatggtga cagtgatgat gatatcttag ctgcccgtga
      901 agccggtatt cgaggtattc gtatacttcg tgcagcaaat tctaattata cgccattccc
      961 tcaggccgga ggatatggtg aagaagttgt tgtcaattca agttattaat ttcttagtct
     1021 gaaatatggc caccattgcg tggccatcat tttttattta tataatgacg aaaccgttta
     1081 cctttgatct agttcacaaa atcaaacttt gcttgcaaaa aattgtcgta aattaaccgc
     1141 ttgctaagat agaatggctc atatccagtt agataaaaag gagataaaaa tgtctgaagt
     1201 atttcattta ggtttaacca aagccatgct caaaggtgca aaaattgcaa tcgttccggg
     1261 cgatccggct agaagtgaac gtattgccaa aaaaatggac aacccagagt ttttagcctc
     1321 aacccgtgaa tttacctctt ggttaggtta tttagatggc gaaccggtgg tggtttgttc
     1381 aaccggtatt ggcggaccgt cggtgtcgat ttgtgtggaa gagttagcac agttaggtgt
     1441 tcgcacattc ttacgcattg gcacaacagg tgcaattcaa gagcatatta atgtaggcga
     1501 tattttaatt accaccggag cggtgcgttt agatggtgcg agccaacatt ttgcaccaat
     1561 ggaatatcct gcagtagcga attttgaatg tactaatgct ctttatgcag cagcagtgga
     1621 atcaggcgtt acaccttatg tggggattac agcttcatca gacactttct acccggggca
     1681 agaacgttac gacactttca ccggcaagat ctatcgtcat ttccaaggtt cattaaaaca
     1741 gtggcaagat ctcaatgtta tgaattttga aatggaatcc gccactctct ttacgatgtg
     1801 ttcggcatta ggcttgcgag caggtatggt tgctggtgta attgtaaacc gcactcaaca
     1861 agagattccg aatgaagcaa ccattcacga caccgaacat aaagccgttt cggtagtagt
     1921 ggaagcggca agaaaattaa ttaaaggcta atctttaaat ttaaaagcaa
//
LOCUS       DANMGB010000259         1970 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.260, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000259 DANMGB010000000
VERSION     DANMGB010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.260"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            362..1894
                     /locus_tag="PXG19_002530"
     CDS             362..1894
                     /locus_tag="PXG19_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL6067771.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
BASE COUNT          543 a          319 c          421 g          687 t
ORIGIN      
        1 taaataagca taaataaaaa aatagatact ttatatctaa agatattcgt gctatcttaa
       61 acactgtcct acaaattgta gaggtgcgaa ttcaataagt atttcttctg agtggaaaac
      121 gatgaagggg aaggaaaggt gaatttgccg aaatcaatta agcgtcatct taattggttg
      181 gggtcgttgt cgaaagaaac gacactgtcg tagtaaatgc tacggagtgc tactgttagg
      241 gtgggtttca gatatttcac atttgccttc ctttcatatt tatttttata aatatcccag
      301 tagatctctt gtttggctat tcttatttat acaaattata cacagtcatt ttagaggttt
      361 tatgaatcta gttgattatt ctacgtcact ttggtcggta ttgccggcac tgattgcgct
      421 aatattggca attgtgacac gcaaggtgat tatttcactt agcatcggta ttctctttgg
      481 tgcatttatg cttactaata gcaattttct tgatgcactt acttatatta aaaatagcgt
      541 tgtttcttta gtttataaag gggctgaaga aggattaaat tcaaataatg ttaacattat
      601 tttatttttg cttttattag gggtattaac gtcattatta agtatttcag gtagtaatca
      661 ggcgtttgcg aattgggcgc agaaaaaggt aaaaggcaaa cgaggcgcaa aattaatggc
      721 ggcaggtttg gttttcttta cctttattga tgactatttc cacagtttag cagtaggtgc
      781 gattgcccgc cctgttacgg ataaattccg tgtttctcgt gctaaattag cttatatttt
      841 agattctacc gccgctccaa tgtgcgtgtt aatgccaatt tcaagctggg gggcttatat
      901 tattacctta atagctggct tattggctac gcattccatc acaggctatt cgccactagg
      961 cgcatttatg acaatgagcg caatgaactt ttacgccatt tttgcgatga ttatggtgtt
     1021 ctttgtggca tatttctcat ttgatattgg ttcgatggcg cgttttgaac gtcaagcagc
     1081 gcatttagca gaattagatg atgagcaaat tgaaacgaaa ggacacgtgc gcgatttgat
     1141 tttgccaatt attgcactta ttgttgctac agtctcaatg atgatgaaaa caggtgcaga
     1201 tgcactggcc gaatcaggtg cttcattttc tatactaggt gcttttgaaa atactacggt
     1261 aggcatttca ttagttgttg gtggtgtggc agggcttata gttgcaacta tttgtatcat
     1321 tacaagcggt aatatttctt ttaaaaatta cgtccgtgct tatggcttag gtgtgaagat
     1381 gatgtctggt gcaatcacta ttctcttctt tgcgtggaca ataaacggcg tagtaagtga
     1441 tatgcaaaca gggaaatatc tatcaggatt ggttgcagaa agcattggag cagagttttt
     1501 acctgcaatt ctatttgtgt tagccgcagc aatggcgttt tcaacaggaa ctagctgggg
     1561 aacatttggt attatgttgc caattggagc ctcaatggca gtgcattcag atccagcatt
     1621 aattattcct tgtttatctg cagtaatggc tggtgcggtt tgtggtgatc actgttctcc
     1681 agtatctgat accactattc tttcttcaac aggcgcacaa tgtaatcata tggatcatgt
     1741 catttctcaa ttaccttatg ctttattagt tgcaacagct tctattattg gttacttagt
     1801 ggttggcttt acccaatcag cggtattggg atttattgct acagctgttg ttatggcaat
     1861 actcattttg ctttttaaag aaaaaaagca ttaatttccg aaaatgtgaa gggaatcaca
     1921 gaatgagatt tattgatgag ataaaatagc actcaagata tggatatcga
//
LOCUS       DANMGB010000260         1954 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.261, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000260 DANMGB010000000
VERSION     DANMGB010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.261"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            9..950
                     /locus_tag="PXG19_002531"
     CDS             9..950
                     /locus_tag="PXG19_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL6067772.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1046..1933
                     /gene="dapA"
                     /locus_tag="PXG19_002532"
     CDS             1046..1933
                     /gene="dapA"
                     /locus_tag="PXG19_002532"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL6067773.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          596 a          306 c          439 g          613 t
ORIGIN      
        1 aataattaat gagtgagaaa aaacagttac ctccattcca gacacaattt ttacacccta
       61 aatattgggg attgtggctc ggtttaggtg tttttaagtt aattttatgt ttgccttatc
      121 ctattttagt aaaaattggt ctgggactag gtaaattgtt tactaaattg ggttttggta
      181 aacgtcgtat gcgtattgct cgccgtaatt tagagctctg ttttccccat tactctgctg
      241 agaaagtaga ggaattagtc gaagaaaata tgaaatcggt tggaatggcg attattgaaa
      301 ctggtatggc ttggttttgg tcggataaac gtattcttaa atggtctaaa atcgaagggc
      361 tagagcattt aacacagcgt gatcaggaaa ggggtatttt acttgtaggg gtgcattttc
      421 tgactttaga actcggtgca agaattattg ggctacatca tcaaggagta ggggtttatc
      481 gaccgaatga taatccatta ttagattgga tacagtttcg aggacgtgtt cgctcaaata
      541 aagcgatgtt agatcgtaaa gatgtgcgtg gaatgattcg agctttaaaa aatggcgaga
      601 tgatatggta cgcgcctgat cacgattatg gaagacgaaa tagcgttttt gtaccatttt
      661 ttgcagtgga ggaaacttgt actactgcgg gtagttatat gttacttcgt tctgccccaa
      721 agagtttagt gatcccgttt agcccgattc gaaatttgga ctattcaggc tacacagtaa
      781 aagtcagtcc tgccgttgat tttagtcaat gtcaaaatga agttgaaacg gctattttaa
      841 tgaatcgggt ggtagaacgt gaaattatgg ctgcgctaac tcaatatatg tggctacatc
      901 gccgttttaa aactcgccca aatgaaggtg atcaaagcct atatgattaa ttttaaataa
      961 tttcaaaaaa gtgcttgcat atttaagctg aattttgcaa tctagcaatg ttatcaagca
     1021 taataaaaaa atacaggaga tgattatggc gaccccttta tttcacggta gtatcgtagc
     1081 attagttaca ccaatgactc atggtgaggt agattatcag gatttaaaaa aattagttga
     1141 gtatcatatt caagcaggtt ctcacgctat tgtatctgtt ggtacaacag gtgaatctac
     1201 cacattaagc attgatgaaa atgttaaggt gattaagaaa acggttgaat ttgctgatgg
     1261 acgtattcca attattgcag gaactggttc taatgcgacc agtgaagcta tcactatgac
     1321 taaattatta gcaaacagtg gtgtagctgg ttgtttaagt gtagtgcctt attacaacaa
     1381 gccaacgcaa gaggggatgt acttacacta caaagcgatt gcagaaagta cagatttacc
     1441 acaaattctg tataatgtgc cggggcgaac agggagtgat ttaaaacctg aaacaatcgg
     1501 tcgcttagcg aaaattgaga atattgttgc tgtgaaagaa gcaacgggtg atttaagccg
     1561 cttaccttta attaagcaat tagccggtga agattttatt ttcttaagtg gtgatgatgc
     1621 taccggtttt gagtctatga aattaggtgg tcaaggggtg atctcggtca ccaataatgt
     1681 tgctgctgct gatatggcaa aaatgtgtga gttagctctt gccggtcaat ttactgaagc
     1741 agaagaaatt aataaccgct taatggcgtt acaccatgac ttatttgtcg aatctaaccc
     1801 gattccggtg aaatgggctg cttataaatt aggtttaatt agtgagccta atttacgttt
     1861 accgcttacc acactgtctg aatcagcaca gcctgtagtg ttaaaagcat tacaacaagc
     1921 gggcttaatt tagttatttt ttgcaaatca aatt
//
LOCUS       DANMGB010000261         1946 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.262, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000261 DANMGB010000000
VERSION     DANMGB010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.262"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(63..938)
                     /locus_tag="PXG19_002533"
     CDS             complement(63..938)
                     /locus_tag="PXG19_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6067774.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            1046..1882
                     /locus_tag="PXG19_002534"
     CDS             1046..1882
                     /locus_tag="PXG19_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL6067775.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
BASE COUNT          607 a          444 c          405 g          490 t
ORIGIN      
        1 attggttttg cgtgggctta cgcccaccct acaaagctag ataaaaaacg taaaaatccg
       61 atctagccca gcaccaccaa gattgcggca atcactacta aaatcagccc tataaaatct
      121 tgaattttaa gccgttcttt aaacacaaaa taggaaatac cgagaataaa gaaaatttcc
      181 acttgtccaa gcgtttttac aaaggcaacg tggttcaggc tcattgcatt gaaccaaccg
      241 aatgagccga gaaatgaaaa caggctggtc aacataccta attttggaaa acgaaagaat
      301 ttaatcagtg tctctttttg gagaagagct aggtatataa ccaatatcac tgcctcaaag
      361 ctaatcacgc taaaaagtac ccacgccgct gaaagcaaat agtggctgtt gagttgcagg
      421 cttgcctctc gcacccaaag tgatgtgagg gcgaaacata aaccgctggc tatgccgaga
      481 aagagtgttt tccacgaaag ttggcgtaga ttaccgctgc cggtcattaa gaaaatcgcc
      541 actccaccta gtaccacgcc aagccagcca atgccactga tggttacacc aaaaaataac
      601 acgcccagta aagccgccca tactgcctcg cttttcgcca gcccgacacc tattgcataa
      661 ttttttaagt gaaaaagttg caccattagc gaagttgcca gaatttgagc caacccagcc
      721 ccgatagcat atacaaaaaa cagcggtgga aaatggggaa tgttgaggtt atcgtcatat
      781 tggtataaaa aatagagata accgcttgcc aacggcacag catagaaaaa gcgggcgagc
      841 gttaccccca atacaggcac attgacgctt aattgctttt gaaaggcatt gcgaccggct
      901 tgagccacgg ctgccagcag agtaaaccaa atccacataa tgatgatgaa ataagaaaag
      961 atagccaaat cttactcttt tattctcagt ttgcaagcgg ttaaaaaacc attaaaattt
     1021 gcaaaaaatt gaaagaataa acacaatgct ccctcatatt tatattggca ccggcggcta
     1081 tgccgacaca gatttaatcg gcacgcttta cccattcggc actgcaaaag aggattttct
     1141 ctttgtctat agccaacatt acgacacgct ggaaattaac agcacattcc acgcccccat
     1201 cgggcagaaa gcctttgaag gaatggtgca gaaagcggaa ggtcggctga atttttcggt
     1261 gaaactgcat caagatttca gccatcaacg cacggcgact ttagatcaag cacaattatt
     1321 tcttaatgcg ttagctccgt tcaccgctga agggttattg gcaaatttat ttgttcagtt
     1381 cccaactcaa tttgaacgta tgccacttaa ccgccgttac cttgccgagt tgtgccaatg
     1441 gtttgcggat tatccgttag cgattgaatt tcgccaccca agctggcata ttccggcggt
     1501 gtttgatacc tttgcgaaaa gctctaatct gatttggtgt aatgtggatt acccacaaaa
     1561 tatcggctta ccggcatttc acttttttgc caaccaacgt actgcttatt tacgcttaca
     1621 tggtcgtaac ccgaattggt ggaaagggca gagtgcggca gaacgccacg attaccgcta
     1681 ttcagacgag gaattaaaag gcttggcaga attgcttttt agccgcagaa cggaatttga
     1741 caggctctat ctctactttg aaaacaccac taaaagccac gccttttata atattcaaac
     1801 cctaaaaggc tttttggcgg aaaaaggatt tcaaatcaaa cctgtgccgg agaatttgct
     1861 tgggcagcag agtttgtttt gatgggtaat ttacattgtt gaggagtaaa taaagggcca
     1921 tgccatttag taatggatag ccctta
//
LOCUS       DANMGB010000262         1900 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.263, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000262 DANMGB010000000
VERSION     DANMGB010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.263"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            48..689
                     /gene="sodA"
                     /locus_tag="PXG19_002535"
     CDS             48..689
                     /gene="sodA"
                     /locus_tag="PXG19_002535"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL6067776.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(752..1876)
                     /gene="alr"
                     /locus_tag="PXG19_002536"
     CDS             complement(752..1876)
                     /gene="alr"
                     /locus_tag="PXG19_002536"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL6067777.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
BASE COUNT          547 a          414 c          412 g          527 t
ORIGIN      
        1 ggagtttaac tctgattaac ctatttacta tttgagagga attaactatg gcatatacat
       61 taccagaatt aggctacgct tatgatgcgt tagagccaca tttcgatgct aaaacaatgg
      121 aaatccacca ttctaaacat caccaagctt acatcaacaa tgcaaatgca gcattagaag
      181 ctcaccctga attattagaa aaatgtccgg gtgcattaat caaagatttg agccaagtgc
      241 ctgcagaaaa acgtattgca gtgcgtaaca acgtaggtgg tcatgtaaac cacactttat
      301 tctggaaagg tttaaaaaca ggcactacct tacaaggtgc attaaaagaa gcgattgagc
      361 gtgatttcgg ttcagttgaa gctttccaat cagaatttga aaaagcagcg actactcgtg
      421 ttggttcagg ctgggcgtgg ttagtattag aagagggtaa attagccgtt gtttcaaccg
      481 ctaaccagga caacccacta atgggtaaag aagtggcagg cgtttcaggc tatccgattt
      541 tagtcttaga cgtttgggaa cacgcttact acttaaacta ccaaaaccgc cgtccggatt
      601 tcattaaagc attctggaac gttgtaaact gggacgaagc cgctcgccgt tttgaagaaa
      661 aagtagcaac ctgcggttgt gcgaaataat attttcgatc ttgaataaga tacaagcggt
      721 aaaatttgtt gaaaatttta ccgcttgttg tctatttata ttcaaaaatc acacgaggag
      781 tgagtttagt aatcagctca tagctaatca cgccaatgtg tttcgccaca tcttcaatta
      841 atagttgctc tccccaaaaa atggctttat cgcccacttt atcttggctc tctgcaccta
      901 aatcgaccgt cagcatatcc atcgaaactc gaccgacaat cggcactatt ctaccgttaa
      961 tcaacacagg ggtaccttca ggagcattgc gagggtagcc atcgccgtag cccattgcag
     1021 tcacgccgag tttggtatct ttagggctta cccaagcacc accatagcct acaggctcgc
     1081 cggctttatg ggtacgcaca gcgatcaggg aagaggagag cgtcattacc ggcttaaaac
     1141 ctaaatcggt aatcggcgta tagtggggag aaatgccgtg cataataata cccgggcgaa
     1201 cccaatcata atgagcctgt ttccaataaa gaataccgct tgaggcggaa atactgcggt
     1261 cgtgatcctg atatttttgc gtagcttgct caaacaccgc aatttgtttt tcggtatagc
     1321 cacaatcgag ttcatcggca cggctaaaat gactcacaaa gctgattgaa ttgaccaagg
     1381 cacaattttt caaacgttca acaaagtgat cgacttgctc cgggtgaatg cctaagcggt
     1441 gcattccggt gtcgattttt agccaaatgt taatcgggaa gtagattttc gctttacgag
     1501 tccaaaagcc tttttgttgc tctgcctgcc attcttttgc tacttgctcg agtaattcca
     1561 gttgttcgag gttatgaatg acggtatcaa acttgcggga aagggttttg agtagctctt
     1621 ctcggtcaaa aaaaccttca actaacacaa ttttgcctgt gtatccggtt tcttgaattt
     1681 ctaaggcttc acgcaaacgg gcaactccaa agccatcaac catatctgct aatgtgccgg
     1741 cagccggcaa taagccttgc ccgtaagcat tggctttgat catcgccaat aatttttgct
     1801 gtggagcgaa agatttgatc aggcgaatat tatggcggag ggcttgacta tcaatggttg
     1861 ctgttgctgg tttcatactt atctacatag ttaaaatcac
//
LOCUS       DANMGB010000263         1854 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.264, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000263 DANMGB010000000
VERSION     DANMGB010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.264"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..387
                     /locus_tag="PXG19_002537"
     CDS             <1..387
                     /locus_tag="PXG19_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL6067778.1"
                     /translation="HLVINLNEMDSNTVMLAVLNLIDVVMIANLLVMVIVGGYETFVS
                     RLKVDDHPDQPEWLDHVNATILKVKLSMAIISISSIHLLQTFINASNLDEKQMMWQVV
                     IHLAFIVSALAMAYIDKMLNSGHMKH"
     gene            464..1834
                     /gene="gorA"
                     /locus_tag="PXG19_002538"
     CDS             464..1834
                     /gene="gorA"
                     /locus_tag="PXG19_002538"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL6067779.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
BASE COUNT          562 a          275 c          424 g          593 t
ORIGIN      
        1 catctagtta tcaatttaaa tgaaatggat tcaaatactg ttatgttagc ggtattaaat
       61 ttaatagatg tggtgatgat tgcaaatctt ttggttatgg ttattgttgg aggatatgaa
      121 acttttgtct ctagattaaa agtagatgat caccctgatc agccagaatg gttggatcac
      181 gttaatgcga ctattttgaa agtaaaactt tcaatggcaa ttatcagtat ttcttctatt
      241 catttattac aaacatttat caatgcttca aatcttgatg aaaagcaaat gatgtggcaa
      301 gtagttattc acttagcctt tattgtttca gcattagcga tggcgtatat tgataaaatg
      361 ttgaattcag ggcatatgaa acattagtct tctatgcaaa tttaatttga taaagcgctt
      421 aacgaataag ttgcttttgt ttttatagat cgaggaatag cttatggcta aacattatga
      481 ttatattgct atcggcggtg gtagtggtgg tattgcttca attaatcgag cagcaagcta
      541 tgggcaaaaa tgtgccatta ttgaagcaaa acatttaggt ggcacttgtg tgaacgtggg
      601 atgtgtaccc aaaaaagtga tgttctatgg tgcacaagtt gcagaagcga ttaaccatta
      661 cgcccctgat tatggttttg acattacggt aaataatttt gattatgcca aattagttga
      721 gagtcgccag gcctatattg ggcgcattca tacctcatat ggtaatgtgc tggcaaaaaa
      781 taatgttgat gttttaaatg gttttgctcg ctttaaagat gctaaaacat tagaagtgag
      841 ttatgctgat ggttccgttg aggaggtcac agcagaccat attctgattg caacaggtgg
      901 tcgtccaact gtacccaatg tgaaaggggc tgaatacggt atcacttctg atggtgtatt
      961 tgcactagat gctttaccga agtccgtagc aattgtgggg gcagggtata ttgcagttga
     1021 attagctgga gtatttaata gtttaggagt aaatacccat ctttttgttc gtcaacatgc
     1081 tccaatgcgt aatcaagacc cattaatagt ggatacattg cttgaagtat tagctcaaga
     1141 tgggatcgaa ttacatacac aagcgactcc tcaagaagta gttaaaaatg cagatggttc
     1201 attgacatta aaattgcaag atggtcgtga aacctctgtt gaaagcttgg tgtgggctat
     1261 tggtcgtgag ccagcgacag ataagattaa tttagaggct gctggtgttg aaaccaacga
     1321 gcgtggtttt atcaaagtgg ataaattcca aaatactaat gtgccaaata tctatgctgt
     1381 tggtgatatt attgaaggtg gtattgaatt aactcctgtt gcagttgcag ctggtcgcag
     1441 gctatcggaa cggttgttca ataataaacc aaatgaacat ttggattata gcttagtacc
     1501 gacagtcgtt tttagccacc caccaatagg tactgttggt ttaagtgagc caaaagcgat
     1561 tgagcaatat ggggcagaaa atgtgaaagt gtataaatct tcatttactg caatgtatac
     1621 tgcggttaca caacatcgtc aaccttgccg aatgaaatta gtttgtgttg gggaagggga
     1681 aaaagtggtt gggttacatg gtattggttt tggtgttgat gaaatgattc aaggttttgc
     1741 tgttgcaatt aaaatgggcg caacgaaagc tgattttgac aacacagtgg ctattcaccc
     1801 gacaggatct gaagaatttg taaccatgcg ctaaatgtaa taaaatgtta cgta
//
LOCUS       DANMGB010000264         1803 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.265, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000264 DANMGB010000000
VERSION     DANMGB010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.265"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            49..>1803
                     /locus_tag="PXG19_002539"
     CDS             49..>1803
                     /locus_tag="PXG19_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL6067780.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKRLSQGYYFEGNILNIEYQYSETAQDCS
                     SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKM
                     DLGNSVLGLKHIELRFEDN"
BASE COUNT          585 a          312 c          277 g          629 t
ORIGIN      
        1 ttcacatata tactgtgaga tattcttttc ataggcagga gatctattat gctaagtaag
       61 ctacaacgct ttaccttaat gataaaaagc accatcatta agcatccact ggaaatttta
      121 ttcgttactt acgtcacgat tttacttatc aataatgtga gcgactacga attaatcaaa
      181 cgctttcaaa atctaattgc tctttttcct atttgcttta ttttgcttta cctgatacgc
      241 gataccaaag cttattggct attcgctccg attccgatag caatcgtctt tttctttggt
      301 caaattaatt taacattatt ggaagattct cgttattggg ctaccatatt ttgtgtattc
      361 ctttgtttga tcagtcaata ttggtacaaa aacaaccatt attttgtagc cggaacaact
      421 aataaattag ttaacattgt ctttgctaca gttttatctg gcattatttt tgcaacatta
      481 agcgctatta ccatagccat tattgcttta tttgatttaa ataaacaaaa caactttcat
      541 atttttgaaa aatttggcat tttttctagt ttttgggcat tccctgtttt atttttaact
      601 cttgaacaac agactaccaa tgattctaga tatctaaacc gcattagtga aatgttacta
      661 aactggattt tgtctccggc attaattatc tatactgcaa ttatttatgc ttatgtaatt
      721 tttattgcgg ctaaggggca aatgccagat ggggttgttg caaacgtagc gcttccctat
      781 ttagctttcg gcctagctat acaagcggtg caattattac taaaaaatgc aaaatggcag
      841 tggttttatt ctcactttac ctatttagca cttttgccgt taacattaat ttggtatgcc
      901 atctatattc gtttcagcca ttatggctta actgaagccc gtatttattt agtgattggc
      961 acaataacct tatctatttg ctatacctta ttactattta aacagttggc gcaatatcgt
     1021 ctcttttctg cagtgtcgat agcaattatt ttaatttcag tgtttatttt agatccgaaa
     1081 acagttgcgc ttaaagatca aaccaagcgg ttggacaact atttgctaaa acacaaatta
     1141 ttagatgtaa ataacaaaat cagcacaaaa gctgtactta aataccaaga atcattaaat
     1201 gaaaaccgag atgaagccga atatttttat tcaatgctcc actatgttgc cagaggaatg
     1261 cctgctgcac aatttaaaga gaaatatggc gtaaattcaa gctacgattt aatgagtgaa
     1321 ataagagaaa gaaatactga cccacgttat tttgaagcta ctaattctga gctggttcgc
     1381 ttaactaaag cagatatggc aaatgctcgt gaatatatta catttagtag ccaattatat
     1441 cggcctaatt cattttccca tcaaaaaata gaaaataagc tatgccaaaa acgcctttct
     1501 caaggttact attttgaggg aaatatatta aatattgagt atcaatactc agaaacggct
     1561 caagactgct cttcaataac acaagatcct actgaatttg ttatctactt taaaggactt
     1621 gggactacta ttgaatttaa cattaacgat attttgaaaa aaatctttgc taaacatcag
     1681 ttatctatta cccagcaaca caaaaatgag gttttagaaa agattaaagg cgatttactc
     1741 aaaatggatt taggaaattc agtacttggg cttaagcata ttgagttaag atttgaagac
     1801 aat
//
LOCUS       DANMGB010000265         1738 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.266, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000265 DANMGB010000000
VERSION     DANMGB010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.266"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..346
                     /locus_tag="PXG19_002540"
     CDS             <1..346
                     /locus_tag="PXG19_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HDL6067781.1"
                     /translation="INGAVGLLASALENLIRNGQKYAKKMLSVSMNVEDGHLFLTVED
                     DGEGVPENEYENILKPFYRVDEARARETGGAGLGLAIVQNVVKQHQGTIHLDKSNMGG
                     LKIELKLPLWRS"
     gene            396..>1738
                     /locus_tag="PXG19_002541"
     CDS             396..>1738
                     /locus_tag="PXG19_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6067782.1"
                     /translation="MKLIEIENLNKYFGLGQTRAHILKNINLSIERGDFVAIIGASGS
                     GKSTLMNIIGCLDTASSGICRIDGKETQTMSADELSDLRQRKLGFIFQRYNLLSALNA
                     NENVALPAIYAGMDSSSRKKRADTLLTKLGLSDKTQHKPNELSGGQQQRVSIARALMN
                     GGEIILADEPTGALDSKSGETVLEILRDLHYEGHTIIMVTHDPNIAAQASRIVEIKDG
                     QIIRDERQRTDVQETALNKTTTQKPRFWNQLFESFKMATSAIMAHKMRAILTMLGIII
                     GITSVISVVALGRGSQQQILSNINNLGTNTMDIMNGTGFGDRRANLTKNLTISDALML
                     SRQNYVESTTPSSNVSATLIYGNTAVTGSVRGVGEQFIDVKGLKLISGRFFSAEEVKN
                     VAQVIVIDPNTQKDLGLTEPVEGKTILVDKKPLQIIGVAQQSNNMNQSSLTLWAP"
BASE COUNT          573 a          335 c          378 g          452 t
ORIGIN      
        1 tattaacggg gccgtaggtt tactggctag tgctttagaa aatttgatcc gaaacggcca
       61 aaaatatgca aaaaaaatgc tgtcggtctc aatgaatgta gaagatggtc atttatttct
      121 cacagttgaa gatgatggcg agggggttcc tgaaaacgaa tatgaaaata ttcttaaacc
      181 tttttaccgc gtagatgaag caagggcaag agaaacagga ggagccgggc taggattagc
      241 gattgtgcaa aatgtagtta aacagcacca aggtactatt catttagata aaagtaatat
      301 gggaggatta aaaatcgaac tgaaacttcc cctttggcgt tcctaaggca aaaagcatat
      361 cgtttgtaaa aaacagtcga aaaataaccg cttgtatgaa attaattgaa atagaaaatc
      421 tcaataaata ctttggcttg gggcaaaccc gagcccatat tctaaaaaat atcaatctca
      481 gtattgaacg gggtgatttt gtcgcaatta taggtgcttc aggttctggc aaatctacct
      541 taatgaacat tattggctgt ttagatactg ccagctcagg tatttgccgt attgatggca
      601 aagagaccca aacaatgtct gcagatgaac tgtctgattt acgccaacgt aaactggggt
      661 ttattttcca acgctataat ctcctttcag ctttgaatgc aaacgaaaat gttgccctac
      721 ctgcaattta cgccggaatg gatagctcat cacgcaaaaa acgagctgat acgttattaa
      781 cgaagttagg attatcagat aaaacccaac ataagccgaa tgagttatct ggggggcaac
      841 agcaacgagt cagcattgca cgagccttaa tgaacggcgg tgaaatcatt cttgcagacg
      901 agcctaccgg tgcattagat tctaaaagtg gcgaaactgt attggaaatc ttgcgagatc
      961 tacactacga aggtcatacc attattatgg taacacacga cccaaacatt gccgctcaag
     1021 ccagccgtat cgttgaaatt aaagatgggc aaatcattcg agatgaacgc caacgtactg
     1081 atgttcaaga aacggctctc aataaaacga caacacaaaa acctcgcttt tggaatcaac
     1141 tgtttgaatc cttcaaaatg gcaaccagtg caattatggc gcataaaatg cgggcaatcc
     1201 tcacgatgct gggcattatt attggcatta cctctgtgat ttccgtagtc gctctcggtc
     1261 gaggctcgca acaacaaatc ctttctaata tcaacaacct aggcacaaat acgatggata
     1321 ttatgaatgg aaccggcttt ggcgatagaa gagccaatct gactaagaat ttaaccatca
     1381 gtgatgcctt aatgttgagt cggcaaaact atgtggaaag cactactcct tcaagcaatg
     1441 tcagtgccac attgatttat ggtaataccg cagtaaccgg ttcagtacga ggtgttggag
     1501 agcaatttat tgatgtgaaa ggattaaagc tgatttcagg gcgctttttc agtgccgagg
     1561 aagtaaaaaa tgtagcgcag gttattgtaa ttgaccctaa cactcaaaaa gatttggggc
     1621 taacagagcc tgttgaaggt aaaacgattt tagtggataa aaaaccgtta caaatcattg
     1681 gtgtggcgca acagtcaaac aatatgaacc aaagtagcct taccttatgg gcgcctta
//
LOCUS       DANMGB010000266         1685 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.267, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000266 DANMGB010000000
VERSION     DANMGB010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.267"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            76..1029
                     /gene="msrP"
                     /locus_tag="PXG19_002542"
     CDS             76..1029
                     /gene="msrP"
                     /locus_tag="PXG19_002542"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL6067783.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            1029..1613
                     /locus_tag="PXG19_002543"
     CDS             1029..1613
                     /locus_tag="PXG19_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL6067784.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT          529 a          325 c          335 g          496 t
ORIGIN      
        1 acacttattt tgtaagaatt ctagatcagc tgagtccaaa ataataacaa caattcataa
       61 aaaaaggata gttcgatgaa aaaattaaca attcaagatg ttacacccga aactattttc
      121 taccaacgcc gtaaaattat taccgcgtta ggtttaggta ttgcagcttc tgcattgcct
      181 aaagtaagta tggcagaaac acaaagacac ttgcaatcac tacagtttaa accggatcca
      241 aataaagggc ttgaactcac tccggaaaac aaagtaatag gctataacaa tttctatgag
      301 tttggcgtgg ataaaagtgc accagcaaaa aatgcggcaa acttcaaaac cgatccttgg
      361 acattggaaa ttggcggaga agttgaaaat ccgtttagct taaatcatca acaattgctt
      421 aatacgtttc cactagaaga acgcatttac cgttttcgct gtgttgaagc gtggtcaatg
      481 gttgtgccgt ggatcggctt tgagttagct cgcttaattg agatggcaaa accaaccagt
      541 aaagccaaat atgtggtctt tcacacttta tatgatcctg cacaaatgcc ggggcaaaaa
      601 aatcgcttgc taggcggtgg gattgattat ccttatgtag aagctttacg cttagatgaa
      661 gccttaaatt cattaacact actatccgtc ggtttatacg gtaaaaccct gccaccgcaa
      721 aacggtgctc ctattcgctt agtcgtgcct tggaaatatg gctttaaaag tattaagtcg
      781 attgtgaaaa tcacctttgc tgaaaaacgc ccactcacta cttgggaaag tcttgctcca
      841 aatgaatatg gcttttatgc taatgtgaat ccaaatgttg atcatccacg ttggtcgcaa
      901 gcatctgaac gagtaattgg tgcaggcggg ttattatccg tcaaacgcca accaacacta
      961 atgtttaatg gctacgaaaa tgaagtggca aatttatacc gtggcttaga tttaaaggtg
     1021 aactactaat gctaacctgg ttacgtatac tcattcatct tggctgttta ttaccgctag
     1081 tttgggtagc acagctatta tatacgggta atgaaacaat attaggtgcc gatccgatta
     1141 aagaactgga gcattttctc ggttatggtg caatcgtcat tttttgtata atgtttctac
     1201 ttggtattgc cctacaatac ctaaagaaaa accagtatca aattttacgc cgtccattgg
     1261 gcttatgggc gtttgtatgg gcagctctac atatttcaag ctatctattg ttagaattaa
     1321 gccttgatgt aaaattattt tttagcgagc ttgccggtcg cccatatttg attttaggag
     1381 cagctgcttt tttcattcta agcataatgg caataacttc gctgcctatg ctaaaacgaa
     1441 aattaggaac acgctggggg acgattcacc agtgggctta tcctgcatta gtattggcga
     1501 tggtacatta ttattggtcg gtaaagagcg taacattcga tccaattatc atcggagtct
     1561 tagtgctgtt tattgttgct cataaaatac aggctaaatt tgcaaaaaaa tagcaaaatc
     1621 acaccgcttg cagcagtcaa actacataca aaaaataagg ggctgtccta gataacgact
     1681 aaaac
//
LOCUS       DANMGB010000267         1673 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.268, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000267 DANMGB010000000
VERSION     DANMGB010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.268"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            250..1614
                     /gene="glmU"
                     /locus_tag="PXG19_002544"
     CDS             250..1614
                     /gene="glmU"
                     /locus_tag="PXG19_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL6067785.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          569 a          327 c          350 g          427 t
ORIGIN      
        1 aattaattta atattttagc aaagatatac actattgtag agagatagca caaataagtg
       61 ctacctattt ataccagttt tccacaagat aagaatcgac ataatagaaa aagataacaa
      121 acagacaaat ttcttttgct tgtcgatgaa atccacttat aaaaaggtta aaatattaca
      181 aaaatatcac ttatagcaat ttacacgtta ctataagcct tcatctattt agtcaaataa
      241 ggattctata tgactcaact gagcgttgtt attttagctg ccggtaaagg cactcgtatg
      301 tattcagatt tacccaaagt gttacaccca gttgccggta aacccatggt aaaacacgtt
      361 attgatactg ccaaacagct agatgcccag caaattcatt taatttacgg acacggtgcc
      421 gatctgttaa aagcacgttt aagcgaagag cctgtaaact gggtattcca agccgaacaa
      481 ttaggcacag gacatgcaat gcaacaagca gctccttttt tcgctgatga tgaaaacatt
      541 gtaatgcttt atggtgatgc ccccctaatc acaaaagcca ctttagagcg tttaatcgca
      601 gccaaaccgg aaaatggtat tgcattacta accgttgaat tggaaaaccc gacaggctac
      661 ggacgaatta ttcgtgaaaa tggttctgtg gtagcgattg ttgagcaaaa agatgccaat
      721 gaagcacagc ttaaagtcaa agaagtgaat accggcgtga tggtagcaag cggtgcgagc
      781 ttcaaaaaat ggttgaaaaa cctaaataac aacaatgctc aaggtgaata ttacatcact
      841 gatgtgatcg caatggcaaa ccaagaaggc tttaaagtac aagcggttca ggcaactgaa
      901 tttatggaag tagaaggggc aaacaaccgt ttgcaacttg ctgcacttga acggttctac
      961 caaaaacgtg aggcggaaaa actgttattg gctggtgtaa ctattatcga cccaagccgt
     1021 tttgatcttc gtggcactgt cacccacgga aaagatgttc agatcgatgt gaatgtcatt
     1081 ctagaaggtg aaatcaaact cggtaacaat gtaaaaattg gtgcaggctg cgtactgaaa
     1141 aactgcgaaa ttggcgataa tgttgaaatt aaaccttatt ctgtgattga agattcgatt
     1201 gtcggggcaa aatccgctat cggtccattc tctcgcttac gcccgggggc agaattagcg
     1261 gaagaaaccc atatcggtaa ctttgtggaa atcaaaaaag ctaccatcgg caaaggttca
     1321 aaagtaaatc atctcactta tgtaggcgat gcggaaatcg gcaaagaatg taacatcgga
     1381 gcaggtgtaa tcacttgtaa ctatgatggt gcgaataaat tcaaaaccat tattggcgat
     1441 aacgtatttg tcggctcaga cagccaactc attgccccgg tcacgattgc cagcggttca
     1501 accattggtg ccggtgcaac agtcactaaa gacattgcgg aaaatgaact ggtaattagc
     1561 cgtgtaccac aacgccatat tcaaggctgg caacgcccga ctaaaaagaa atagtgccag
     1621 tggtcaaaag ttattatatt taaaaattgg ctttgccaat aacagcaaag cca
//
LOCUS       DANMGB010000268         1659 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.269, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000268 DANMGB010000000
VERSION     DANMGB010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.269"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..798
                     /locus_tag="PXG19_002545"
     CDS             <1..798
                     /locus_tag="PXG19_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL6067786.1"
                     /translation="QSYLVEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQ
                     QKSLFNELKQELIQLKSTQLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVS
                     DIIVNASLDGKIESTSVTVGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGD
                     EVNIRYEAFPFEKFGQFKGKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELA
                     DQNVKYNDTSLYFMSGMKAEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            798..1589
                     /locus_tag="PXG19_002546"
     CDS             798..1589
                     /locus_tag="PXG19_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL6067787.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
BASE COUNT          546 a          275 c          292 g          546 t
ORIGIN      
        1 cagagttatt tagtggaaat tgaaaaaagt atgaatgact atgcggagtt ggttaaacgc
       61 tatgagaaat tattaaaagt agggcattcc agccacgatg aagtgaatat tcagaaaagc
      121 cgttatttcc aacaaaaatc actgtttaat gagctaaagc aagaattaat tcaattaaaa
      181 tccacccaac ttagcttgga aaatgaaatt gaaacccgta aaaccgaatt taataatcag
      241 attattcgct atgaaatgca aaaaagcgat ttaaacattc gtttaatgga atttgaatct
      301 gtttcagata ttattgttaa tgcctcttta gatggaaaaa ttgaaagtac cagcgtaaca
      361 gttgggcaaa ttattaaaga aaatgacccg cttgcacaaa ttctgccaca gaataaagga
      421 aattatcagc tagtgatgtg ggtaccgaat agtgccattt catttattaa acaaggcgat
      481 gaggtgaata ttcgctatga ggcttttccg tttgaaaaat tcgggcagtt taagggcaaa
      541 attacgtcaa tttcaacctt accagcttct ttgcaagaac ttagttttta taaaaatctc
      601 cctgtaaatt tagagcaagg tattccgctt tataaaattc tgattgagct tgccgatcaa
      661 aacgtaaaat ataatgatac ctccctttat tttatgagtg gaatgaaagc cgaagccacg
      721 ttatttttag aaaaacgtaa actgtatgag tggatatttt tccctatgta tcaattacgc
      781 aaaaatatgg agcaataatg acaggaatta agcagttaaa atttgatttt cggagaagaa
      841 tacctgttat tttgcaaact gaaacagctg aatgtggctt agcctgttta gcgatgatgt
      901 tgggctatta cgataaaaac accaatttat ttgaattgcg aagtcaatat ggtacttcct
      961 ctcgtggcgt aacgctgcat actttaattt ctattgcaaa tgactgtggt ttaataactc
     1021 gccctctttc tctagagtta gatgaagtac cacaacttcg tctgccttgt attcttcatt
     1081 gggattttaa tcattttgta gtattaactc acgcaagtga aaaacagttt attatccacg
     1141 atcctgcttt cggtaaacgt aaattatccc gtgctgaatt ttccaaccat tttaccggag
     1201 tcgctttaga agtttggtct gaagttaaat ttgagaaaag caacaatgaa aataccatta
     1261 gtttgtatga aaccttaaag catatttctg gcataaaagg tgcattagtg aaaatttttg
     1321 ccctttcaat gctcattgaa ctcattgcct tattgatgcc aattggaaca cagttagtga
     1381 tggatcacgt tatgcaagcg aaagatcaat cattactttt aattatctgt attgggctat
     1441 ttttatttac cctttttcgc acaatggtca gtatgtttag ggcttgggtt tccttgaaaa
     1501 tgaattattt aattgatttt caatggacag ccagtttctt ttctcatctc ttaaaattac
     1561 cgcttgattt ctttgaaaac gccaagtagg tgatattcat tcccgattta gttcattaaa
     1621 aaccattcag aaaactctaa cttcaagcat tattaccac
//
LOCUS       DANMGB010000269         1609 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.270, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000269 DANMGB010000000
VERSION     DANMGB010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.270"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..226
                     /locus_tag="PXG19_002547"
     CDS             <1..226
                     /locus_tag="PXG19_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067788.1"
                     /translation="KQNKNLTDESEEQAILAYLTENIMARIEKEQPLEKTLILYSEQL
                     ASFEQKSPMALHREKFEAKPTGLAELINNL"
     gene            237..1187
                     /locus_tag="PXG19_002548"
     CDS             237..1187
                     /locus_tag="PXG19_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL6067789.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            1184..1378
                     /locus_tag="PXG19_002549"
     CDS             1184..1378
                     /locus_tag="PXG19_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067790.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
BASE COUNT          602 a          330 c          305 g          372 t
ORIGIN      
        1 caaacaaaat aaaaacctca cagatgaaag tgaagagcaa gctattctgg catatctaac
       61 agaaaatata atggctagaa ttgaaaagga acagccactt gaaaaaacat taattcttta
      121 ttctgaacag ttagcaagtt ttgaacaaaa atcgccaatg gcattacacc gtgaaaaatt
      181 tgaagcaaaa cctaccggct tagctgaatt aattaataac ttataagagg taaaaaatga
      241 gtttatccac tttcgcccac gcattaaaac tagataaaca aggtaacgtt attttatttg
      301 acgatagccc cgaagaacag gcaaaactaa ttagccgctt aaaacaaaat cgccttttta
      361 aattattgaa tttagtgcaa accaagcacg caaagggcga agcgattggg ctattcacac
      421 cgatagccgg cacaaccaac accgaaagcg gagaggaacg agagccaaaa caagcccttg
      481 cacccgctca aaaataccac tgcgaacaaa tcaacattga tagctatatt cgctatgaaa
      541 aaatcgatgc ttacaacctc gaaaacagct tagaagaacg cttaaatcag ttacttgatg
      601 acaaccttct aagagggctt ttaatggttg gctggcaagg cgtaagccgt gcagatacat
      661 caaacgcgac aaacaaccaa ctcgcccaag acgtgaaaaa aggctggcta caaaaaatca
      721 gagagggcaa gcccgaagcg gtaattaatg gagcaaccat aggcaaagag caacaataca
      781 aaagcctaaa tgctctgatt aagcagggat taggcaaaat tagcccagcg tatgcaatgg
      841 gcggagatat gatcgccatt tgtgggcggg atattatcgc tgatgatgta attcagcttg
      901 aacacaacga tttaagcgaa aacctagccg acttattaac cttatgccaa caagctaaag
      961 gcggactaaa agcggtaagt attccctact tcccaagcaa tgcgatttta atcactcgat
     1021 tagataacct ttcgctatat cttcatttaa acaatatccg ccgtaaagcg tttgatacgc
     1081 cacaaaaaga cagcgtagag acattttact ccctcaatgt ggattacatt gtagaagatt
     1141 ttaacgcctg ttgtttaatt gaaaatattg aggttattga agaatgagcc tagaaagcta
     1201 tatccaacaa gcggaagaaa tggagctttt agaaaaactc gattttgttt cagacctgtt
     1261 agaacttgag aaagtcagcg aaattgaagc ctatcgcatt ttaaccgccc acggcgaacc
     1321 taaaccccaa ccggcacaag aaaagctaat aggttgcgta gattttcttg atgactaacc
     1381 caagccccga aaggggcttt ttgcattttt gcaacaaaaa acgaccgctt gcaccctttg
     1441 aaattattgc tatcattaat aaaaaacaat aaccaaatca aatgagagta cagcaatgac
     1501 aaactataaa ctaccggcta gaaagtggta caccttagag caggcaacaa aacgcattaa
     1561 acaactcact ggcgaagata tagaaataga agatttatta cattattgg
//
LOCUS       DANMGB010000270         1587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.271, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000270 DANMGB010000000
VERSION     DANMGB010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.271"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            322..576
                     /locus_tag="PXG19_002550"
     CDS             322..576
                     /locus_tag="PXG19_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067791.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXG19_002551"
     CDS             776..952
                     /locus_tag="PXG19_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067792.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..1464
                     /locus_tag="PXG19_002552"
     CDS             913..1464
                     /locus_tag="PXG19_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067793.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECENTPKLLELYKQN
                     KFQILNTIGSENGLKTLFFIPDF"
BASE COUNT          586 a          273 c          266 g          462 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaaata cgcctaaatt attagaacta
     1381 tataaacaaa ataaatttca aattctcaat accattggaa gtgagaatgg tctaaaaaca
     1441 cttttcttta ttcctgattt ttaactacag ctaatatttc attagaagaa agtcgccagc
     1501 tttgtcagga agtcatatat gggagaaaga acaatgtctc tacttaaaaa agcacaaacg
     1561 tttatttcta tttttaatga cgtgcga
//
LOCUS       DANMGB010000271         1549 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.272, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000271 DANMGB010000000
VERSION     DANMGB010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.272"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..259
                     /locus_tag="PXG19_002553"
     CDS             <1..259
                     /locus_tag="PXG19_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6067794.1"
                     /translation="TYRSYDALDVSEFHHERINHSELFAEKQNHINGIENFWNQAKRV
                     LRKYNGINRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCEI"
     gene            398..1468
                     /locus_tag="PXG19_002554"
     CDS             398..1468
                     /locus_tag="PXG19_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067795.1"
                     /translation="MKFNKKLILTFAATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQ
                     NNLQAQNVPQAQNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPP
                     VPQPQSQKIDGSFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKD
                     FLVLNLSDINAEQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRV
                     NDNISDKLTATYRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDG
                     NAEIFTIKGDTKQLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSD
                     QKYLIGEAKSDNWQAIMVSEKK"
BASE COUNT          570 a          283 c          283 g          413 t
ORIGIN      
        1 tacctatcgt agctatgatg cccttgatgt gagcgaattt catcacgagc gaatcaacca
       61 ttccgaactg tttgcggaga aacaaaacca tatcaatggc attgaaaatt tttggaatca
      121 agcgaagcga gtactccgaa aatataacgg aattaaccga aaaaatttcc ctttattctt
      181 gaaggaatgt gaatttcggt ttaactttgg tacaccaaaa gaacagctca aaacgttgcg
      241 aaaatggtgt gagatttagg gctaatctac tacagcccca aaaattttca taagggaaac
      301 gtttacgtaa aactcctcag accactcatt cttattttat ataaaaaatg tgatagactt
      361 ctcgcagttt cgttttatat atttaaggaa taactaagtg aaattcaata aaaaattaat
      421 tttaacattt gctgcaacct tagttttaag tgcttgcgga ggaagcggta gcggaggttc
      481 gtcttcaaca ccgaatcacc ccaaaccagt actagtacca aaaacacaaa ataatcttca
      541 agcacaaaat gttcctcagg cacaaaatgc ctctcaggca caaaatgccc ctcaggcaca
      601 aaatgctcct caggcacaaa atgctcctca ggtggaaaat gctcctcagg cacaaaatgc
      661 tcctcaggta gaaaatgctc ctcaagcaga ggttactccg cctgtaccac agccacaatc
      721 acaaaaaatt gacggttctt ttgataaaat tggttcagta aaactcaata aagaggctca
      781 aactcttgag cttagtagat tcactttggt ggataaatta ggcacaccac cgaagtttga
      841 taaagtaagc ggtaaaaaaa ttattgaaga aaaagatttt ctcgtattaa atttgtctga
      901 tattaatgct gaacaactct ctggcgattt tcttattcgc cgtagcgatg atctattcta
      961 tggctactat cacgatacaa atggcaaaaa tcttgtcgat gctgccgata aattcagtca
     1021 atattttgtc gtgtatgatg agaaacgggt aaatgataat atctctgata aattaacagc
     1081 aacttaccgt aaaaaagaag gctttgtata tggttcaaat ccacatacta aagaatttgc
     1141 cgcacggatc agcaaattgg gggatgtaga aattaaattt gaaaatggtc aagctcaagg
     1201 aagtataaaa gacgaaaaag atggaaatgc tgagatcttt actattaaag gtgatacaaa
     1261 acagttagag attaccccaa cggaaagtaa ccgaatcatt atagcaattt tagaccaaaa
     1321 tcaaaaaagc tatactccag gaatggaaaa agcaattatg gaaactaagt ttattgattc
     1381 aaaggctggt aattccgacc aaaaatactt aatcggtgaa gcaaaaagcg ataactggca
     1441 agcaataatg gttagcgaga aaaaataaag ttatcttttg ctaaaaactg aaataaaaag
     1501 gctgagtccg ggtaatatcg gcctcagtct tttaaattgt agaaaatca
//
LOCUS       DANMGB010000272         1429 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.273, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000272 DANMGB010000000
VERSION     DANMGB010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.273"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..422
                     /locus_tag="PXG19_002555"
     CDS             <1..422
                     /locus_tag="PXG19_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL6067796.1"
                     /translation="AGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAFACFALV
                     WQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYESLRQKLI
                     SAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            complement(707..1129)
                     /locus_tag="PXG19_002556"
                     /pseudo
     CDS             complement(707..1129)
                     /locus_tag="PXG19_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(1259..1429)
                     /locus_tag="PXG19_002557"
                     /pseudo
     CDS             complement(1259..1429)
                     /locus_tag="PXG19_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019518307.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
BASE COUNT          407 a          283 c          259 g          480 t
ORIGIN      
        1 atgcaggaca gcgttacctc aacactctgc cgaatcagaa aaaattagcc aattttatgc
       61 cagattacca cattattcgc ttggtaaaat tttcctctaa agtaatgcct gcttttgctt
      121 gctttgcatt agtttggcaa tattgcttta ccgatccgac ccaatctatt ttagccaatt
      181 cggtacttac tgctgttttc gccatttcta ttccgtttca agggttatat tggcttggaa
      241 aacgggcaag atcaccgtta tctttatcat tattggaatg gtatgagtcg cttagacaaa
      301 aattaatttc ggcacaagtc aaattagaag aaacacaagc ggtaccttct ttccaagatt
      361 ttgcaaattt actcaagcta gcagaagaga cttggggaga tgaatatttt gatgagttat
      421 aaaataaaaa aagccccact taaaataagt ggggtaaaac ttttgttcta attctggagg
      481 tttgaattac tgttttattg tggggtactg atcttttttg catagagaga aagaaaaaaa
      541 tttgggcgga aaaataacgg cgagccccgt gaatacaagg gttcgccgtt attgtttggt
      601 tggagctatg caaaaaacaa aatgagcagg attagaaaaa aacgagcagt ttttgcgtta
      661 ttttttgcat aggtttgatc ggttttaaaa ctattttaaa tctgttttaa actaaagaat
      721 gcccgatgtg taccacttgc ccgatgattt gtaggttttg ggcttggtct gctgtaatct
      781 ttattaactc gtactcttct cggttgtctg aaataagctc tacaccgtcc catagcagtt
      841 ttacacgctt aacccaaaca ctgtcgccgt tttgtacaat gtaaatatta ttgtcgcctc
      901 gtatctcatt acgacttaaa tcaactagta gctggtcgcc attatcaata gtcggataca
      961 tcgagtctcc acttgcccaa aaaacagcac acttcttggc attaacacca agcgtatgca
     1021 acaagctatc agcataaggc tcttgtccat caggttttgt tacaccttca ttaaagctcc
     1081 caaagcctgc agatacttta atagatgcaa aactatcaat cattgagatt atgttattca
     1141 aaacggtgcc tgataattca gatcctttgt tttgctcttc aggtgtaatc tctcttacta
     1201 tgctatcctt gattgcattt attccacttt taaatccgag tgcttcttgg gctttacgag
     1261 gcaatgaagt tatgtgatat tcattccccc caccttttac tccaactgca tcacgtttta
     1321 tccagagttc ttttaatgcc tttcttgtaa tgtttgttgc ttgctttgga aggtcaggca
     1381 aatccaattc ttctagttct ttggctgaaa accaaacttt atcaaatga
//
LOCUS       DANMGB010000273         1320 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.274, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000273 DANMGB010000000
VERSION     DANMGB010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.274"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(31..291)
                     /locus_tag="PXG19_002558"
     CDS             complement(31..291)
                     /locus_tag="PXG19_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067797.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            complement(312..518)
                     /locus_tag="PXG19_002559"
     CDS             complement(312..518)
                     /locus_tag="PXG19_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067798.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            648..1307
                     /locus_tag="PXG19_002560"
     CDS             648..1307
                     /locus_tag="PXG19_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL6067799.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
BASE COUNT          386 a          263 c          255 g          416 t
ORIGIN      
        1 ttctaaaaaa tttttcattg ttggtaactt ctatgttgtc gcttcttcga gatttattcg
       61 cttatatcgt ttctctttca gctctagtaa ctcgtcttta tccgcaagct caatacttaa
      121 gtaatcaata atcaccgcca ccatttccac attatctgca aatgtacggc taaattgtga
      181 ttcactcagt ccgattgctc ttgctagttt cttatgcgtc accgttgcgg attttcgatg
      241 aatcaaatcc gcaatcgctc ttgcattttt tgttaattca ttgcgtggca ttgcaagcct
      301 cttggggtaa attagttgcc aacggggaaa acgtcatcaa ttcgtacgtt tgcacctaat
      361 tcgttcaatc cctcaacaat tttttgagca acgtaaatag atggggtacg atttccagtt
      421 tcatagttag ctattcttgg ttgcccccaa ccaatctgaa cagctaactg agcttgactt
      481 ataccaattt ggtttcgtat ttcagctatc ttattcatac aaatttctct ttgtgattta
      541 tatcttttaa ttaaatcaca aaatgaacta attgtaaatt tcattttgtg attcacaagg
      601 atataacgga gcgtgttaaa atgaggaaaa tctaatagga gagtgctatg acaaccttag
      661 gtagtagaat taaggcttac agagaacagc taggaatcag ccaatatgaa gttgctgaaa
      721 gatgtacatc aatagataat cgagataaaa ataacaaatg ggggcaatct cgcattgcta
      781 attatgagag aaacaatcgt actcccgatc ttgatgatat tgaaatactc agcaaagtgc
      841 ttggtgtttc tccagaaaca cttgcttttg atacaaacgt tcagcttgcc agaccgacaa
      901 aatcgaactc atatccgttg atcagcaata tacaagcggg tttatggaca gaagcctttg
      961 atttcaaaga ttcggagggc tacgactata tcgatacgga aattgatgcc ggaccggacg
     1021 ctttcttttt aagaatttcc ggaatgtcga tggagcctaa atttagtgaa ggcgatctgg
     1081 tgttaatcga tattcgcaaa cgtcctcacc cgggcgatta tgtagcagcg gttaatggca
     1141 caggtgaggc tactttaaaa cgttatcggg agttaggcga atggtctgaa tccggcaatc
     1201 ctcattttga gctaataccg cttaaccccg actttccaac actcagctca atgaaacaag
     1261 atattcgtat tattggtgtc gctgttgagc atagaagcta tttgtaaagt ccaccaaagc
//
LOCUS       DANMGB010000274         1298 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.275, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000274 DANMGB010000000
VERSION     DANMGB010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.275"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            178..1296
                     /locus_tag="PXG19_002561"
     CDS             178..1296
                     /locus_tag="PXG19_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6067800.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
BASE COUNT          424 a          190 c          255 g          429 t
ORIGIN      
        1 aaaatgccgt ctttgttttg gggtttgaac tattgacatt gagttttctt tttgcaatta
       61 ttctggcgaa aacaatgtta ggcgttttgc tgatacattg tatcttggat aattactctt
      121 acaccttaat gagggtaatt acttatcata taacatataa aatctaaggt gaaaattatg
      181 aaaaaaacat tagttgcatt agcagtaacc gcgttcgcag cgtcagcatc agcaaccacc
      241 gtttacgatg cagaaggttc aaaagtagat tttgatggtt ctttacgtat tgttcttgat
      301 agaacaaatt ctaaagagct agacaatcat aatgttgtta aaactaaaaa agatgcacac
      361 acaggaatcc gtaacactgg ttcacgtttt ggtgtaagag taaaacatga tttagctcaa
      421 gatttctatg cattaggtcg tgttgagttc cgttttaaca aaaataccag tgatgatggt
      481 tttggtgatt tatatactaa acgtgcttat gttggtttag gtagtaagca atatggtgaa
      541 ttaacttttg gtcgtcaagt aacgattgct gatgatttaa gtcaatcagt agattacaac
      601 tacggtatta atccaaaagg tgattatatt caaaccgatg gtaaccaagt tattcgttat
      661 aactaccgtg gtgttgaaaa cttacatgta agtgcaaact ataactttgc acaagatcgt
      721 aaagatggta aagtattagc aaataaactt caaaatgcat acggcattgg tgcattatac
      781 actgtagata actgggattt acgtgcagct tatggtcata caaactacaa aacagctact
      841 gatagcacta agcaccgtaa agatggtgta ttaggttctg ttggttataa atttggtgac
      901 ttaaaattaa gtgttgatac aggttattct cgtgagaagg gtttagctgt tacggatgat
      961 aatggtgtaa ctacattcta taatggtgtt aaatcaaacg ctttctatgt atctccaaac
     1021 tttgaatatc aagtagtgcc tgcatctaaa gtatatggta actacttata tgagcgtgtg
     1081 aaatctaaat caaatggttc tacatatgct gctggtaaag aaaaaactca tggtttctta
     1141 cttggtgttg attaccaatt ccataaacaa gtagttgctt ttgttgaggg ttcttatact
     1201 cgtactaaag actatgataa agtaactaat ggttatgaat actcaggcaa atcaactaac
     1261 aaagctatcg gtgttggtat gcgtgtatac tggtaatc
//
LOCUS       DANMGB010000275         1293 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.276, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000275 DANMGB010000000
VERSION     DANMGB010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.276"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..707)
                     /locus_tag="PXG19_002562"
     CDS             complement(<1..707)
                     /locus_tag="PXG19_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6067801.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(611..934)
                     /locus_tag="PXG19_002563"
     CDS             complement(611..934)
                     /locus_tag="PXG19_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6067802.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1015..1182)
                     /locus_tag="PXG19_002564"
     CDS             complement(1015..1182)
                     /locus_tag="PXG19_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL6067803.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
BASE COUNT          316 a          295 c          231 g          451 t
ORIGIN      
        1 ttaattgcct cttgattcag taatagcgat cgtgccttac ctgatttagc gacatcatta
       61 gtcacgattg ctacctttct tacaagatct atcttatccc aagtcattgt caaaatttct
      121 gtccgtctgg ctccagtcat caaagcaaac ttacagatag atttcatcca gtctgaactt
      181 aatttatcta ttagctgttt tgcttgttct ttggtgatcc agcgtacacg aattggcggc
      241 tctttctttt tcggtatgtg tgggactgca tccaacatac caagtttatg agcgatattt
      301 aatactctcg ataaagattt cacatactta ttttgcgtac tatgagatag aggctttttc
      361 gtatttgcat tctttttcgg gatatttagg ataatctcct gagctgttaa agagctgagt
      421 tcacgaccgg caaatttgga taaccagtat tcagcatgtc gcttttttgt ggctttatct
      481 tttaattctt cggccgcacg aacgtaatgg agcaaagcat cttcaaagat atattttctc
      541 ttttcctcga gtttatcctc tgcccacatt tcttgcttga gtttatcgtg atactgctga
      601 gcttcacgtt ttacaagcgt gcgagtgctt ctcttaattc tcttgccgtt tggggttgtg
      661 atatcaaccc accacggacc gtttgctttt cgtctgtaga tcgacatttt tcattctcct
      721 cgaccgacag agataaccct cggtcattat cagatcgttt tcttattggg tcaataccgg
      781 ctctcttttt tgctctttcc aaatcttctc ggttgatccg ccaaacttcc gagcctacca
      841 ttttaaaaaa tccccaatcc gccaaatgtt ggcggactgt atttggatgg caatttaatt
      901 cttttgccac ttgattaata gtaagatgtt ccattcatta ctttctccaa aataaatccc
      961 tctaaacgag ggattgtact aaataatcgt taagtctttg ccttatccac tgcatcaagg
     1021 cacagccata ccgtttccat ttggcacatt ggggaaacgg tgagctaata ccgcacaggg
     1081 gaatggctca atttcagaga accacaaagg cttacctaaa ccgtgccacg ctatacttgt
     1141 agcttcgata ccgctacaaa ttgagccgta ggtgaattgc attttttacc tatcctatcg
     1201 aaatactcaa attcccaata cggacaacat tttcttcgtt ggcttctagg atttctctca
     1261 acttagcata ggttttgggg catcttattt gac
//
LOCUS       DANMGB010000276         1219 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.277, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000276 DANMGB010000000
VERSION     DANMGB010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.277"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..232
                     /locus_tag="PXG19_002565"
     CDS             <1..232
                     /locus_tag="PXG19_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL6067804.1"
                     /translation="TLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIYSYISPK
                     TGKRSTKNRIGSYPQMSLVEQSPQVFEQIARL"
     gene            284..871
                     /locus_tag="PXG19_002566"
     CDS             284..871
                     /locus_tag="PXG19_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL6067805.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            864..1219
                     /locus_tag="PXG19_002567"
                     /pseudo
     CDS             864..1219
                     /locus_tag="PXG19_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252950.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
BASE COUNT          447 a          232 c          243 g          297 t
ORIGIN      
        1 aacactttca gacacattac taaaaaatct taaatattcc ccaaatgcga agcctatcgc
       61 agacagtaac gggctattta ttcttgcaca gaaaaaagcg aaagtatgga tttatagcta
      121 tatcagcccc aaaacaggca agcgaagcac aaaaaataga atcggtagct atccgcaaat
      181 gagcttagtg gaacaatccc cacaggtatt tgaacaaatc gcacgtcttt aaaatattaa
      241 attaagagaa agcactattt gcgatgtagc aggagataaa acaatgtttg atgaattaaa
      301 aatagcccaa gcgaccgcct atttgctaca taaggcaggc ggaacaatgg agcatattaa
      361 ggtaatgaaa ttgctttatc ttgcggatcg cttatcgtgg caaagatacg gctattctat
      421 ttctaatgat gaatattatt cattgcctta tggaccggta ttaagcaaca cactcaacct
      481 aatgcgagga gaagaagcga gcttatacca aaaaaccagt atttggggcg agtggatagc
      541 agataaggaa gatcacaaaa tcagccttaa aaaatccgta aataccgaag atgaatactt
      601 ctttgattgc ctttcagaga gcgacaccga aattttagaa gaggtatttg cgacctttgg
      661 aaattataag ccattcgccc tagtggaata tacccataac cctaaataca ttcccgaatg
      721 ggaagaccca caaggcagaa gcaagccgat ttctttaagc acgcttctta ctaagctagg
      781 gaaaacgcca agcgagatcg aaagcatttt agagcaacag gcggaaaaag ggacaatgga
      841 taaccttttc aagggcttag gcaatgcttg aaatcaaaag acaagtaacg attcttagac
      901 cgaccaacta cggcaaggaa gagaaccact acaagcattt atatattctg cttaccgatc
      961 cgtgctttga tggtgaaacc ggtaaaggag atatgatttt aagtgtaaac tgctcaagca
     1021 ttaaagacgg gaaagcactt gatgaaactt gtattttaaa ggcaggaaca cacgaattta
     1081 tcacacggga cagcttcatt ttctaccgcc atataaaaat tgattcgtta gatgagatta
     1141 aggcaaatat agaagccggt tattttattc aaaagcccta attaatgatg aagcctatca
     1201 acaaatacta aaaggcgta
//
LOCUS       DANMGB010000277         1195 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.278, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000277 DANMGB010000000
VERSION     DANMGB010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.278"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>1195
                     /locus_tag="PXG19_002568"
     CDS             <1..>1195
                     /locus_tag="PXG19_002568"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6067806.1"
                     /translation="EPPFEIPESWVWVRLGDICLKITDGTHHSPPNIDKSDFLYITAK
                     NIKKDGLDLSKISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNEPFSML
                     SSVALIKTSQEIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVPVPPLL
                     EQQRIVQKIEELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQDPNDE
                     LASCLIERIKAEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIKAGQERCIADEVPFEIP
                     QNWTWVRLGEVGDWSSGATPNRHNPEYYNGTIPWLKTGDLNNGIISSIPEFITDKALQ
                     ECSVRLNPVGSVLIAMYGATIGKLGILKIAATTNQACCACIPFNGIYNKFLFYYLMSQ
                     KAEFQK"
BASE COUNT          423 a          193 c          237 g          342 t
ORIGIN      
        1 gaaccacctt ttgagattcc tgagagttgg gtgtgggtga ggttggggga tatatgccta
       61 aaaattacag atggaactca tcattctccc ccaaatatcg ataagagtga ttttctttat
      121 attacagcta aaaatataaa gaaagatgga ttagatttat caaaaattag ctatgtaaca
      181 aaagaaattc ataatgaaat tttcagccgt tgtaatcctg aaaagggaga tattctatat
      241 attaaagatg gagccacaac tggagtaagt attataaata ctcttaatga gccatttagt
      301 atgttatcca gtgttgcctt aattaagacc tcacaagaaa tagataatga gtacttaaat
      361 tatgtaatga atagtcatta tttttataac atttctattg gaagtatgtc tggaacaggt
      421 attccaagaa taacattaac taaattagaa tcttatttag tcccagttcc gccactccta
      481 gaacaacagc gcattgtgca aaaaatcgag gaattattac cgcttgttga acgctacgag
      541 caaaccgaac agcaactcac taaactcaac aatacattcc ccgaacagct gaaaaaatcg
      601 gtgttacacg cagctattca gggtaaatta accgagcaag atccgaatga tgaactggca
      661 tcttgcctga ttgagcggat aaaagcggag aaaaatcgtc ttattgccga gaaaaaactc
      721 aaaaaaccaa aaagtgtttc agagattgta atgcgtgata atttacctta tgagatcaaa
      781 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggact
      841 tgggtgaggt tgggggaagt aggtgattgg agttcaggtg caactccaaa ccgacacaat
      901 cctgaatact ataatggtac gatcccgtgg ctaaaaacag gagacttaaa caacggaata
      961 atttcatcta tacctgaatt tattacagat aaagcattgc aggaatgttc tgtaagatta
     1021 aatcctgttg gttcagtttt gatagcaatg tatggagcga caattggtaa gcttgggata
     1081 ttaaaaatag cagcaacaac aaatcaggct tgctgtgcgt gtattccttt taatggaatt
     1141 tataataaat tcttatttta ttatttgatg tcgcagaaag cagaatttca gaaaa
//
LOCUS       DANMGB010000278         1146 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.279, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000278 DANMGB010000000
VERSION     DANMGB010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.279"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            105..350
                     /locus_tag="PXG19_002569"
     CDS             105..350
                     /locus_tag="PXG19_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067807.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
     gene            569..>1146
                     /locus_tag="PXG19_002570"
     CDS             569..>1146
                     /locus_tag="PXG19_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL6067808.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAEG"
BASE COUNT          394 a          185 c          222 g          345 t
ORIGIN      
        1 cttttaccag cacagaaggt aaacctctca cagttaaacg ggtaggaaat gattacgagt
       61 attcgtatga caaaactact ttcaaaaacc cgattaaaaa ggcagtgacc aacgacggtt
      121 cgattatcgc cagaggctca ggttttacta cttatgcctt agagttggaa aatgatggct
      181 tgaaatatct agtcggattt gttcaaccaa atggaaatgc aaaagagttt attgagccgg
      241 gagcaacaat tcgccgtagt aatgatcaac caagtattgg ttctgtggat tgtgaccctc
      301 gtaaaaaaat ccattataag tttgatgttc atttgatgaa tactttataa tacctttgtg
      361 gtgctagagc tagcccaagt taaaaaagac aaagctcggc agatgaacaa ttgtggtgtc
      421 agagctgacc cacgttaaaa aacacaatgc tcggtaggta aatcccttag gtttaaaaaa
      481 tctaagggat ttttgtttaa aagacttgct ctttattatc aggtggatct atcataattt
      541 aaactctcta atgtgtcagg agataaaaat gtgtaaaaaa gctttcccat tatggggctt
      601 aatcttcgga ttactgctat ccacttcagc attctcagtg tctaaaaact tcaactatca
      661 aaacatattg atggaatcat tacattttag tgagaatatc gagcttagtt cgttatctaa
      721 agactggtta ctttacagcg atagaaatac gtatcataaa tatcaaaatg acgagtttga
      781 gtttcaggat aaaattgagc aagctggtaa gaaactacaa aaactggtgg atgacagaaa
      841 atctgaagaa gcccctattg ttttcacaat tcctgtaaac tcagaattcg ggaattatga
      901 ttttgaacaa ggtaagtttg agtaccaacc cctgatgaat gggcatatgt atatttcttc
      961 taatcaatat actgaaaatt tgccaagaaa aattaatctg tatgtttcta atcccgagtt
     1021 tattgacggt atacctatgg gcaaggataa agctaaagag tttttacaga agcgtaaaaa
     1081 ttctttggga aacataaatc gctctgttat attgtatgtt gatgtacaat ttgaaaaagc
     1141 agaagg
//
LOCUS       DANMGB010000279         1108 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.280, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000279 DANMGB010000000
VERSION     DANMGB010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.280"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            245..505
                     /locus_tag="PXG19_002571"
     CDS             245..505
                     /locus_tag="PXG19_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067809.1"
                     /translation="MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKK
                     ANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY"
     gene            595..>1108
                     /locus_tag="PXG19_002572"
     CDS             595..>1108
                     /locus_tag="PXG19_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067810.1"
                     /translation="MFQYAILIIFPLCRTITNELSMEKQIYNRRKTLFGNEETAALYY
                     AAKDIIFEYEIYKPYSIYDDETISSLTLFNCFRYSKNKITHQIQVEYFCFDKKQWIKE
                     VHKYSKGGFKRCVNIPFFRFSKFFLNNAQRTAFSYVTHYIKKHSYAYSKADNIQELLV
                     KFFSRKQPVMQ"
BASE COUNT          369 a          168 c          184 g          387 t
ORIGIN      
        1 tttgattatt atatcaatgc aatagatacg catttctata ttaatagcca aagaatctgt
       61 gatatagatg attggaatga aatgttagat aagattcgtg aagaaatgac gccggctaaa
      121 ttagttgcct aatttttgca aatttttact aaaaatgacg cttactgtcg tcttaattca
      181 cccacttggg gaaatatctc cccaatggga tgacatttcc cctctttctg tttaggagaa
      241 atgtatgact tttgagcttg gtagagtatg tgcaactcgt gcagttgctg aatgtttcaa
      301 tcaacataca ttagttgatc tacttcatcg ctactgcagt ggtgattggg gaaatttgtg
      361 tgataacgac aagaaagcca atgtgaaagc tattgaacgc ggaggacgca ttttagctcg
      421 ctatgatgtg gaagatgaaa cactttatgt aatcacagag gctgatcgta gttacactac
      481 aattttattt ccttatgaat attaatggag cttccattta taccctacat ttttatgtta
      541 tcaaacgccg tcaaatgatg gcgtttttct attttatatc tttcgatttt atagttgttt
      601 caatatgcaa ttttaattat ttttcctctt tgtagaacaa ttacaaatga attaagcatg
      661 gaaaaacaaa tatataacag aagaaaaaca ttattcggca atgaggagac ggctgcactt
      721 tattatgcag ctaaagacat tatctttgaa tatgaaattt acaaacctta ttctatctat
      781 gatgatgaaa ccatttcttc tctaacttta tttaactgtt ttagatatag taaaaacaaa
      841 attactcatc aaattcaagt cgagtatttt tgttttgata agaaacaatg gataaaggaa
      901 gttcataaat attcaaaagg tggatttaag agatgtgtta atatcccttt ctttagattt
      961 agtaagtttt tccttaataa tgcacaacga acagcctttt catatgtaac tcattacatt
     1021 aagaagcatt cctatgccta tagtaaggca gacaatattc aagaattatt agtaaagttt
     1081 ttctctagaa agcaacctgt tatgcaaa
//
LOCUS       DANMGB010000280         1093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.281, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000280 DANMGB010000000
VERSION     DANMGB010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.281"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..192
                     /locus_tag="PXG19_002573"
     CDS             <1..192
                     /locus_tag="PXG19_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067811.1"
                     /translation="PQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSESYT
                     VDGESVRDIQLNALRKVNE"
     gene            192..560
                     /locus_tag="PXG19_002574"
     CDS             192..560
                     /locus_tag="PXG19_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067812.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            590..778
                     /locus_tag="PXG19_002575"
     CDS             590..778
                     /locus_tag="PXG19_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067813.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            831..>1093
                     /locus_tag="PXG19_002576"
     CDS             831..>1093
                     /locus_tag="PXG19_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067814.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          348 a          216 c          274 g          255 t
ORIGIN      
        1 cctcaagacg gttcggtaat tgattgggat aacattaaaa atgcgaagct cactaaatac
       61 ccgttagaca atagcgaaaa acgcacctct tatttaggct gttttactac cgatgtgagc
      121 gagtcttaca ccgttgatgg tgagtcggtg cgtgatattc aactcaacgc attgcgtaag
      181 gtgaatgaat aatgaaaatc actttaaatc ttggcattga atataacggg aaaattcgcc
      241 gtgattgtac ggtgcgattg ctgacgatgg gcggtcaatg cacggctcaa gaaatgattg
      301 cggatttagg gtttgaggaa aactcggaag ccctatcaaa gcgtgaacaa accttggtcg
      361 atatggctta cctttcgcag caagttacct ttgatggtat ttatcaaggt aatgtgacgg
      421 ctcaattttt atttgacaat ttagctaccg aagactactg gcagttgatt gaggcaacgc
      481 tcacactccg aaaaaagcgg ttagaaaatg gggtgagcca aagcgagagc gaaagcccgg
      541 caaatcccga tttggcgtag cagaagcctt taagcagtac cgacaagcgg tgattttact
      601 ctcaaaattt gcaattaccg ccgagcaggt atggcaaatg ccgttgcttg aggtatttgc
      661 gtggattgag agctacttgg agagtgaggg cgtaaaaaca ccgcatagcc caatgggtgc
      721 gaatagcgaa gtgaaacgcg aaagctatgt ctttactcgg tgtggcaaaa ttgaataggg
      781 gcgaaagccc cttttttgta ctttaaaatg agtttaaaga gactttaaaa atggcaaaaa
      841 atatgaaagt gcaactggaa ttgacggcaa aagatactgc ctccccagtt ttaaaccaag
      901 ccgctaaaac cgccgaaaaa gcctttaaaa atacagagcg agcggcacaa aaaagtggca
      961 atgctcaaac gcaagcagca cagaaagcag cgaatgctac agaaagctca aatcggaaaa
     1021 tagaacagag ttaccgtaat gcccgccgag tggctgccga tgtgagccga gcccgtgaaa
     1081 cattaggtgt tcg
//
LOCUS       DANMGB010000281         1078 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.282, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000281 DANMGB010000000
VERSION     DANMGB010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.282"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            35..>1078
                     /locus_tag="PXG19_002577"
     CDS             35..>1078
                     /locus_tag="PXG19_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6067815.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNL"
BASE COUNT          353 a          162 c          208 g          355 t
ORIGIN      
        1 tattattaca cctattgtta aaagaggggg cattatggct atttatgcaa tatggaataa
       61 taaaggtggg gttggtaaaa gttatttaac ttttcaaatc gcttgtgagt atgcaaaaca
      121 atacccagca aaaaaagttc tcgttgttga tttatgtcct caagcaaatt catcatctat
      181 gctattaggc ggcattgaaa aaggtgagca agagttagca aaaattcatt ctcaagtaaa
      241 caagaatact atttcaggat atatttcaga aagattagta agtccttacc gttctattaa
      301 tagtgcaacg aaatatgtaa ctcaagttag cactataaat gaatatgtac caaaaaatgt
      361 ttatcttgtt gttggtgatg aggaattaga aatccaatca tctggtattt tacatgcttc
      421 ccaagctgtt catgttcctg attcttggcg gctagtgcat ctttgggtgc gtgatttagt
      481 ttctgatata cagaacgctt gggataatga tgataacgtt gtatttattg attgcaatcc
      541 aagtttcact atttatactg aattagcgtt ggctgcttca gatagattga tcatcccttt
      601 ttccgctgat ggttcatcaa aacgagctgt taagtctgta ttatctctag tatatggggt
      661 taaaaggcac tctggggatg tcagctctca tttttataca gaatctcaaa agagtaagtt
      721 agcattacct caaatttata tgtatgtagg taatagatta acgataaatg ccaaagcatc
      781 agcaaccgca tttaaaacag ttgtagagga aataggtgat gaaatctata atatatggaa
      841 aactaatgct aatttgttct gtattcaccc agcaggtgtt ggtactccta caaataaatc
      901 aagcttcaga aaaatgtttc agtatgaggt gagagatgca aatacagcat ctgttgtttc
      961 aggtgcttta ggtattccaa ttagtcgctt atcatcagga aaaagagatg ttttaggtaa
     1021 aaatgtaatg gtgaatcagt cacaattaga tgctcaagtt cctaacattc aaaatctt
//
LOCUS       DANMGB010000282         1049 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.283, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000282 DANMGB010000000
VERSION     DANMGB010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.283"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            78..473
                     /gene="mscL"
                     /locus_tag="PXG19_002578"
     CDS             78..473
                     /gene="mscL"
                     /locus_tag="PXG19_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL6067816.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(586..849)
                     /gene="rpsT"
                     /locus_tag="PXG19_002579"
     CDS             complement(586..849)
                     /gene="rpsT"
                     /locus_tag="PXG19_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL6067817.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
BASE COUNT          303 a          168 c          219 g          359 t
ORIGIN      
        1 taaagatttt gattataatc gccagcccac gttcttgcga agaccgtgtt taatcattga
       61 atgaaaggaa agcccccttg agtattttaa aagagttccg tgaatttgcg gtaaaaggta
      121 atgttgttga tatggctgtc ggtgtgatta tcggcggtgc attcggtaaa attgtttctt
      181 cattagttag cgatgttgta atgccaccta tcggttggtt aatcggtggc gtggatttca
      241 aagatttagc cattgaaatc gccccggcaa aagaaggtgc ggaagcagtg atgttaaaat
      301 acggtgcatt tatccaaaac gtatttgatt tcttaattat cgcacttgcg gtattcggta
      361 tggtgaaagt gattaactca ctgaaaaaag ctccagttgt agaagaagct cctgcagagc
      421 caacagcgga agagaaatta ttaactgaaa tccgtgattt attgaaaaaa taattaactg
      481 attttgaaac aagggctatt ttagaatatc tagaatagcc ctttgtgtta tggttaaaaa
      541 gaaaaaaacc aacataaagt cggttttttt catatctgtt cgatattacg ctaatttttt
      601 gatttgcgct gctaatttag atttgtggtt agccgctttg ttagcgtgga ttaagttttt
      661 agatgccata cggtctacaa ctttttgcat ttcaacgaaa gccgtttgag ctgctgcttt
      721 atcgcctgct gctactgctg catatacttt tttgatgaat gtacgcatca ttgagcgttg
      781 gcttgcgttg tgttggcggc gtttttcaga ttgaaccgca cgtttttttg ctgacttgat
      841 attagccaag gtcaaactcc taaaatatct gtgtaaaaat tagatataaa caaaatcgtt
      901 gtttatattg cctatcgata gtttttaatt cattttcaac gagacacgtg cttgaaaata
      961 acaccgtttt tctgatagaa aacgataggg cgagatttta acagtttttt tctgattttc
     1021 ctataacaaa ctgctaaaat tatgatcga
//
LOCUS       DANMGB010000283         1031 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.284, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000283 DANMGB010000000
VERSION     DANMGB010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.284"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            84..680
                     /locus_tag="PXG19_002580"
     CDS             84..680
                     /locus_tag="PXG19_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067818.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            complement(716..>1031)
                     /locus_tag="PXG19_002581"
     CDS             complement(716..>1031)
                     /locus_tag="PXG19_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067819.1"
                     /translation="VLKPIFGHRFSNFKDLYNTLKQIMRFRNRLYHQEVVWNKRIAKK
                     PTHALENLEKTYKQFELALQKIAPERFAFRQLSQALIWQRQIFFDQQIFEAEIVILPQ
                     HI"
BASE COUNT          351 a          142 c          211 g          327 t
ORIGIN      
        1 tataattatt gagattgcga gcttgatcac agaccgaaaa ccacgctttt gagaaaataa
       61 gaagggattt ctatggaggt tatatgaaaa aactactgat gactttatgt tgtttgcccg
      121 cttttgcttt agctaacgaa actggagaaa gttgctctaa gattgaagat agtgcaaaac
      181 gcttagaatg ttatgatagt gtctttgtga aaaaagatac tggtaaagat gaagctaccg
      241 atgaaaagtc taattgggaa tatgaacaaa agaaagatga attgcgtaat gcaacgactt
      301 actttgctaa aattagatca actaacacaa tagattttgg tttcccgtat aattcatcat
      361 caatgaattt aatgttacgc aaagacccta aatatggcaa tgatgtaatt tttagcgtac
      421 acggtcaatt taatggctgt atgattgaga gctgtaaaat tactgtgaag tttgatgatg
      481 gtaaattgga aagttatcga atgattgggg cggatggtgg cagcaatgat acgcttttca
      541 ttgaaaatgc aaaagcaatg aaaacctttg tagataagtt gaaaaagtcg aaaaaactaa
      601 ttgtagaggc gagtttttac aattatggca aagggcaatt tacctttgat acacaagggt
      661 tagagtggaa acatttttaa ttaagaaaaa gctacataga tgcgtagctt tttgcttaga
      721 tatgttgggg caaaataacg atttcagctt caaaaatttg ttggtcgaaa aagatttggc
      781 gttgccaaat aagtgcttgt gaaagctgac gaaacgcaaa tcgttcaggt gctatctttt
      841 gtagtgctaa ctcaaattgc ttgtaagttt tttctaaatt ctctagtgcg tgcgttggtt
      901 tcttggcaat tcgcttattc caaaccactt cttgatgata cagccgattt ctaaaacgca
      961 taatttgctt taatgtattg tataaatcct taaaattact aaatctatgt ccaaaaatag
     1021 gctttaatac g
//
LOCUS       DANMGB010000284          979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.285, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000284 DANMGB010000000
VERSION     DANMGB010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.285"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            134..820
                     /locus_tag="PXG19_002582"
     CDS             134..820
                     /locus_tag="PXG19_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067820.1"
                     /translation="MAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGT
                     TISGGTISGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSK
                     TYSETKNSFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSETFYGSGSNRTPT
                     TITLPSVIDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAII
                     SSTNGSSYQL"
BASE COUNT          344 a          178 c          202 g          255 t
ORIGIN      
        1 cccttggcaa aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt
       61 tactgctcaa caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat
      121 tgcagctcga aatatggcag caaactcgat taatgcaagt catattgtgg ggagttcgat
      181 cactgcggat aagctaaatg taaacaattt agcggcaata tcggcaaatc ttggtaaggt
      241 aactgctggt acaattacag ggacgacaat tagtggtggg acaatttcag gtacaacaat
      301 tacaggggga ataattaaag gagcaagaat tgagggatta acaggtaaat ttactggaga
      361 acttgaaatc aaccaattga tcggaggtaa tatctatgag gctaaaactt ggacatcaaa
      421 agcaacaggg aaaagtaaaa catattcaga aacgaaaaac agttttgcat taagtgatac
      481 atattatgag tatgtatgtc aatttgtact acctgctaca aaagcgacga gaacattgta
      541 tgttgtccac actccaacag gagagagtaa aagcgaaact ttttatggta gtggtagtaa
      601 tcggacaccg acaacaatta cattaccgtc tgtaattgat attagcaata ctatttcacc
      661 taatgtatct aacccattta atgattctgg ggcaatactc attgctaata ctcaatatgt
      721 agtaacgtgt cgtgcgtggt gtgcagggcg tgggagaagt gctaaagtga attttcgagc
      781 aattatatca tctacaaatg gttcatctta tcaattatag gaggcaaata tgaaaaaaat
      841 tatactactt acaacaatta tggtttcagc ttgtacaact caatataagc aagactatac
      901 aacaaaacca accttttgtt atcaactagc ccctcaagag caattaccgg ggaaaaactg
      961 tattggctca ggagggcat
//
LOCUS       DANMGB010000285          961 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.286, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000285 DANMGB010000000
VERSION     DANMGB010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.286"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            223..961
                     /locus_tag="PXG19_002583"
                     /pseudo
     CDS             223..961
                     /locus_tag="PXG19_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          341 a          166 c          151 g          303 t
ORIGIN      
        1 gactcctcta atagtccact cttgttccat tttggaacat ttttgtatat tatttcgcct
       61 tttctttctc attgtgttct atgtaggcaa cagcattttt tgcaaagtga tcgacgagaa
      121 cattcattac ttcagtccat tttacaggtc ttcctatctt cattccaact tccatcgcta
      181 atctttctat cttgagtttt ttctctaatt taatattgaa cagagcttta tgaaatggtt
      241 gatatagaac aaacgtcagt tgattggatt gatgtaactt attcagctca tattgattcg
      301 gaatctatcc aaaaacaact tatctctttt ttccaaaaca tccatttagg acaaacacgt
      361 cgtacaagac ataacaaaga atatgacaca acggcagaat ggaattcagg ttcagaacac
      421 cgtattttaa aagtttatct aaaaggtaat gaagttcaaa aaagactaca agaagcccag
      481 cacgacttca aaaaatcacc aagtaaaaag tatctgcaaa actcaattca agtattaagt
      541 aatccaaatc tcattgaatt ttcaaaaaaa tgtgttcgtt ttgaagcaag attaaaacgt
      601 tatttagata aacatcaaat cccacgcaat ttatttgact taattaaata tcagagagat
      661 tacgaagagc agggtagaag cctgattaaa gacctatggc aagacgcatt caaagacatt
      721 attaaggctg tcggggaaag caatatgaat atttacaaca gagatcaaat tcagcgttta
      781 ttacggaaaa attatttttc aatcactcca aaaggaaata tgagctatgc aaaggctgat
      841 cgtttattca gcttttataa gaatttacta agtgatggct atagagaaac gctagattct
      901 atgccaagaa acacattttg gagatatgaa aaggatctta tggccgttgg tttaactaaa
      961 a
//
LOCUS       DANMGB010000286          943 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.287, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000286 DANMGB010000000
VERSION     DANMGB010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.287"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>943
                     /locus_tag="PXG19_002584"
     CDS             <1..>943
                     /locus_tag="PXG19_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6067821.1"
                     /translation="PTYLFAFLQSSYGKIQINRNARPTGQYNLNNEELGAIKVPLIDL
                     ETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQADSNPVNVKSLKESFLQ
                     TGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTKPMYQYIEIGDVNIGD
                     GSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGENDQDLVVSGAFTVLR
                     RKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDILNLPIPKISGEIQEKI
                     AEYIRQSNDLRQQAQNLLAQAKNNVEFEIENNSFNINE"
BASE COUNT          360 a          140 c          161 g          282 t
ORIGIN      
        1 accaacgtat ttatttgctt ttttacaaag ttcttatgga aaaatccaaa ttaaccggaa
       61 tgcacgccca acaggacaat acaatctgaa taatgaggag cttggtgcga ttaaagtccc
      121 cttaattgat ctagaaacac aaaagcaggt agataaaatc attaagcaaa gtaatgattt
      181 tgtacaaaaa tcaacacaaa gttaccaaga agctgaaact ttattattag aaaatctcgg
      241 tttgagagct tttcaagctg atagcaatcc tgtaaatgtt aaatccttaa aagagagttt
      301 cttacaaaca ggacgattag atgcagagta ttatcaaact aaatatgagc aatactggaa
      361 tttaattcaa tcgcaagatt atgtttttat tcgtgatgaa tatttacata tcacccaaaa
      421 acctgattgg acaaaaccga tgtatcaata tattgaaatt ggtgatgtta atattggtga
      481 tggttcatat caaacgaatt ggatagagac acaagaatta cctgctaatg ctaaaactca
      541 agcccaaaca ggtgatattt taatttcaac cgttcgccct tatcgtggtg cagtaacaat
      601 tatcggtgaa aatgatcaag atttagttgt tagtggtgcg tttacagtat tacgcagaaa
      661 ggaaaactct gtttttaata atgaagtttt aaaggtgcta ttacggtcag aactatataa
      721 agattggtta ctacaattta atgtaggtac gagttatcct gtaattaaag ataacgatat
      781 tttgaattta ccaattccta aaataagtgg agaaatccaa gaaaaaattg ctgaatatat
      841 ccgccaaagc aacgatttaa ggcagcaagc acaaaattta ctcgctcaag ctaaaaataa
      901 tgtagagttt gaaattgaaa ataattcatt taatatcaat gag
//
LOCUS       DANMGB010000287          940 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.288, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000287 DANMGB010000000
VERSION     DANMGB010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.288"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            43..222
                     /locus_tag="PXG19_002585"
     CDS             43..222
                     /locus_tag="PXG19_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL6067822.1"
                     /translation="MRIATGAGYRIYYAQQGNVIYILLHGGDKSTQQADIEKAKALWA
                     ELKTTGESNGNNTNQ"
     gene            200..523
                     /locus_tag="PXG19_002586"
     CDS             200..523
                     /locus_tag="PXG19_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6067823.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          329 a          183 c          190 g          238 t
ORIGIN      
        1 ggcgatcata aatctttagc cggtacaggc ggactttatg aaatgcggat agcaacagga
       61 gccggatata gaatttatta cgcacaacaa ggaaatgtaa tttatatctt gttacacggc
      121 ggcgataaat caacacagca agccgatata gagaaagcga aagcattatg ggctgaatta
      181 aaaactacag gggaaagcaa tggaaacaat acaaatcaat gaacaggcag cagaaaagca
      241 cggtttacgc ccttttgacg tggcggagtt tttaaccgat gaggcaacta ttcaagccta
      301 tttagcggaa gtgttaaaag agggcgacca agacgaattt ttagaagcct tgaacaatgt
      361 ggcaagggca aggggaatgg cggagcttgc caagcaaaca gggctaggga gagagagcct
      421 atataaaacc ctagccaaag gcagcaaacc acgctttgac actattcaaa aaattctagg
      481 ggcattcaat ttagtgctta ttccacaagt caaaaatggc taaaacttat cacttgctac
      541 ctgccaaaac ctcacattca aatagccgtt gattgatatt aacggctttt ttattgctta
      601 attctgtacc aattacgcac cgattgcgga tcaatacggg gcaagttttc gcaaaacctt
      661 aatgaaatat gaccgcttgt gattttgtac aaaacgacac aaaccaatgt ataaaatcaa
      721 aacttgccac aaatggcgga atgatattaa atgccccaca aactagcagt atttcttaat
      781 gacttttcat tttaagggta catttaaggg tatgtttaac aagtcttaaa tgcacttctc
      841 aataataaca agcctcatag catacaattc aaactcggct ggggaccatt taagcgttgc
      901 atattgtctt tcactgtctc aaatttacta taaaatcaag
//
LOCUS       DANMGB010000288          931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.289, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000288 DANMGB010000000
VERSION     DANMGB010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.289"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            50..676
                     /locus_tag="PXG19_002587"
     CDS             50..676
                     /locus_tag="PXG19_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6067824.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            725..>931
                     /locus_tag="PXG19_002588"
     CDS             725..>931
                     /locus_tag="PXG19_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067825.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          310 a          173 c          210 g          238 t
ORIGIN      
        1 taaagaacat aaatcccctt tattttggct ataattgtaa tggtgagtca tgactaaaat
       61 taaattttac ggcaatttaa aaaaatttgg tagtgaattt agcttagaag ttaaagatac
      121 tgccgaagct atccgagcct tatgtacaca gattagcgga ttgcgtgagg cattacgaga
      181 cggtgtttat aaagtccgta tcggcaaaca gtatttagac ccgtcagccc ttgaaaaagg
      241 gcttttttat tgtctgaaga aagggcaaac cattcatttt acccctgtta tcaaaggagc
      301 gaaaagcggt ggcgtgttta attttgtttt aggtgcagcc ttgatcggag ccgcattttt
      361 tactggcggt gcttctattg cggcttgggg agctggagca aaaatgatgg gtatgttagg
      421 ggcttcgatg ttactaggag gagtttccca aatgctcacc aaaatgccaa aagcccccac
      481 aatgggtaat gaaacagaaa aagaaagctc aacggctttt tcaaatttaa ataacttggt
      541 gactcaaggc aaacctgtgc cgttggctta tggcttaatt cggaccggct cgcttgtgat
      601 atcgcaggga gttgagacga tcaccattaa agaaaaccaa ccggcaagca acaagaaaac
      661 aggctttaga aaataaggga taattaccga ttcagcacaa gcacagcaac ttaatcagtt
      721 atctgtgaac ttgaccaaag cagagagcaa tttaaatgcc aaaatcacgg aagaaaaaaa
      781 agctcgtgtt gatgcagata aagtgaatgc agataaactc acagacataa caagccgtgt
      841 tgcaaatgcg gaatcaacta ttaccaattt ccaatcaacc aaagcgaata aaagtgaggt
      901 tgcgagcctt gcacaaagtt cgttgcaggc a
//
LOCUS       DANMGB010000289          917 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.290, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000289 DANMGB010000000
VERSION     DANMGB010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.290"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(202..879)
                     /locus_tag="PXG19_002589"
     CDS             complement(202..879)
                     /locus_tag="PXG19_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067826.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
BASE COUNT          279 a          196 c          169 g          273 t
ORIGIN      
        1 agaataatag gaatttggcg gaatttttcg ggaataagtg aaacagaagt attgaaaaca
       61 ggggctttgc ggtgcattgc ccctttgttt tatgtagaaa aaagtaaaaa taatgaattg
      121 cgaaaaaatg gctaaaacta accgcttgta ccattaaaac aacgaaaaag taaaaatgat
      181 ttaagtagct ttaaatggcg tttaaatcat ctcgtgtcca atgtacacaa cctgcccgat
      241 aacctcaaaa tctaacgttt catcaaaaat cacatcaata gggctgtata gctctttatt
      301 atcgctgatt aagcgaatac cgcccataat gccttgcaca cgtttaaccc aaagctgctc
      361 gccttggcgg aacacataaa ttttaccgtc tttaggctgg gtggtggctc ggtttaccaa
      421 tagcatatcg ccatcactga tggttgggta cattgaatca cctgaagcgg taataaatgc
      481 aagatagctc aaatagaagc cacgcacatc tagccatcgt ttacttagcc caatatagtc
      541 atcaggggca tacacctcgc tattgaaagc accaaagcct gctgaagcct gtacattata
      601 aaacggcaca cgttccattt catctgcagt ttgggctgcc actaatgttc taggctcttc
      661 ttttactgcc gtttgagcaa agcctaactc ttgctgcacg cttattggga gagagctgta
      721 gtggtattca aaagcaaccc ccctttttcc ctctatttgt cttttgagcc aattattttt
      781 ggtagctctt cttgttacat ttgatggttg ttcaggtaaa tttcccattc cagctacttc
      841 agatgccgta aaccattcct ttctaattat agaattcata aaaccccttt tgaattcaag
      901 tggaattcaa aaaaatt
//
LOCUS       DANMGB010000290          879 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.291, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000290 DANMGB010000000
VERSION     DANMGB010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.291"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            17..751
                     /locus_tag="PXG19_002590"
     CDS             17..751
                     /locus_tag="PXG19_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6067827.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
BASE COUNT          296 a          145 c          173 g          265 t
ORIGIN      
        1 taagccttat ggtttattgg cgagatcttc ttattttgca cgtttagcag aatggacttt
       61 attagaacat ttacttgtca aacagcctga aaatatttcg gtatgttcat tcggtcaatc
      121 attcggtaca agcggtcgtt tagatgcaga atattaccaa cctaaatttg caagcttatt
      181 tgcacaatta gccaatttca aaacgatgaa attaggtgag attgttaatt tacaaaaatc
      241 ggtagaaccg ggctcggaag cttatcaaac agagggaata ccctttgtgc gtgtatcgga
      301 tttatctaaa ttcggcatca gccaaacaga taaatactta catccgaaag attttggcaa
      361 tgttgtaaga cctaaaaaag acagtatatt actgactaaa gacggcacag tcggcattgc
      421 ttaccgtgtt ccgcaagatt tgaatgtgat tacatcaggg gcaattgtgc atctagagct
      481 taaaactgac gaagttttac ccgattattt ggcgttagca ttgaattctc ctgctgtaca
      541 attacaagcg gaaagagatg cgggaggctc tattatccaa cattggaaac cgtctgaaat
      601 tttagatgta gtgattccgg tattacctaa aaatatccag caaaccatta gcgacaaagt
      661 acaacaaagt tttgcattga gagtagaaag tgaagtttta ctggaaaaag ctaaaatact
      721 tgtagaacaa gaaatagaaa atatgaggta ataatgccta atcataatca agatttgaaa
      781 aaagagtggt ttaataaagc aaggatagat taccactctc cttttttaat gttatggctc
      841 agttgtaata gctggtataa cttccattat tccttaggt
//
LOCUS       DANMGB010000291          878 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.292, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000291 DANMGB010000000
VERSION     DANMGB010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.292"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            31..>878
                     /gene="msrA"
                     /locus_tag="PXG19_002591"
     CDS             31..>878
                     /gene="msrA"
                     /locus_tag="PXG19_002591"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6067828.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDN"
BASE COUNT          333 a          161 c          152 g          232 t
ORIGIN      
        1 aaaattacat aagttataaa ggagaactgg atgaaataca atcaactgtt actatgtttg
       61 gtgtctgcta tctttaccac ctcctcaata gcaaacatca caacccctaa cgagatgcga
      121 tctgaaaact tacaggatat ttacttggca ggaggatgtt tctggggcat tgaagcctat
      181 atggaaaaaa tatatggcgt aaaagaggct acatcgggct atgccaatgg caaaactgag
      241 caaactgctt accgaattat cgggcaaacc gatcatgcag aaacagttca cgtgacctat
      301 gatgctaata aaatttcttt agaaaagctg ttgcaatatt actttaaagt aattgatcca
      361 accagtaaaa ataaacaagg taatgatatt ggccgccaat atcggacagg tatttattat
      421 cagaatgagc aagataaaca aattatttta aaagaaatac aagctcaaca agcaaaatac
      481 aaacaaaaaa tacaagtgca agtagaacca ttaaaacatt atattttggc agaagagtat
      541 catcaggatt acctaaagaa aaatccaaat ggctactgcc atattgattt aaaccaagcc
      601 aacagcatta ttatcgatcc gaaagattat cctaaaccta gtgatgcaac attaaaaatg
      661 aaattaacgc ctttgcaata tagcgttacc caacgtaaaa atactgagcg ttcattcagc
      721 aatgaatatt gggataatac cgcaccgggc atttatgttg atataactac aggagagcct
      781 cttttttcat ctctcgataa atatgactcc ggctgtggct ggccaagttt taccaaacca
      841 attatcaatg aggttgttaa ctataccgaa gataatag
//
LOCUS       DANMGB010000292          873 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.293, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000292 DANMGB010000000
VERSION     DANMGB010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.293"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..645
                     /locus_tag="PXG19_002592"
     CDS             <1..645
                     /locus_tag="PXG19_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6067829.1"
                     /translation="IPEITDQMTKSKNLWLKYEEEAKTTLKPYQEETISRVIQDEINK
                     KMAEIGTTTLEIGGKEHELEDLENQINALALTDEEKLAEDVENDLISKLDEAKAALAK
                     NQQTLKEKRDELLGLNNKLDSSPLVKKGKNALAEGTNAFASGENAIAFGTDSQATGNN
                     AIALGANSKANAESAIAIGKGAQALKEKALALGENAIANRASAIAIGDNHSSKL"
     gene            complement(694..>873)
                     /locus_tag="PXG19_002593"
     CDS             complement(694..>873)
                     /locus_tag="PXG19_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6067830.1"
                     /translation="RKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLD
                     GKRIWVEKEFKLKLI"
BASE COUNT          321 a          165 c          159 g          228 t
ORIGIN      
        1 attcctgaaa ttacagatca aatgacaaaa tccaaaaatc tatggttaaa atatgaagag
       61 gaagccaaaa caacattaaa accataccaa gaagaaacaa tatctagggt tatacaagat
      121 gaaattaata aaaaaatggc tgaaataggt actacaacac tagagattgg tggtaaagaa
      181 cacgagctcg aggatcttga aaaccaaatt aatgctttag ctttaactga tgaagaaaaa
      241 cttgcggaag atgtggaaaa tgatttaatc tcaaagcttg atgaggctaa agcagcctta
      301 gcaaaaaacc agcaaacgct caaagaaaag cgtgatgaat tactagggct aaataacaaa
      361 ttagatagct caccacttgt taaaaaaggt aaaaatgcac ttgcagaagg cacgaatgcc
      421 tttgcttctg gtgaaaatgc catcgcattc ggcacggatt cacaagctac aggtaataac
      481 gctatcgcac taggtgcaaa ttcaaaagca aacgcagaaa gtgcgattgc aattggtaaa
      541 ggtgcacaag cattaaaaga aaaagccctt gctttaggcg aaaatgccat tgccaacaga
      601 gcatctgcta ttgcgattgg tgataaccat tcatctaaat tgtagaagat caaacctaat
      661 ctgacagtcc cccgttttaa attaccgtgt ctgtcagatt aatttgagct taaattcttt
      721 ttccacccaa atccgttttc catcaagtaa ggttgccatc ggtgttctgc cacagcacat
      781 ttttccttga tgtgttcgat ggtgattata atacattaac cactcatcta aatccgcttg
      841 taatgtcgtt aaatccgtat aaattttctt cct
//
LOCUS       DANMGB010000293          863 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.294, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000293 DANMGB010000000
VERSION     DANMGB010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.294"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            141..>863
                     /locus_tag="PXG19_002594"
     CDS             141..>863
                     /locus_tag="PXG19_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6067831.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKNAKDMCQDEN
                     GHYVHASGKRVLVGENKFNQPVT"
BASE COUNT          299 a          147 c          166 g          251 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaagaattct aaatttattt ctgtaagtaa tgatttttgt attatttatg
      721 ctaaaaataa agaaatgggg aaatttgttg aaaatattcc taaaaatgct aaggatatgt
      781 gtcaagatga aaatggacat tatgttcacg caagtggaaa acgagtatta gttggggaaa
      841 acaaatttaa tcagcctgta aca
//
LOCUS       DANMGB010000294          824 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.295, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000294 DANMGB010000000
VERSION     DANMGB010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.295"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            2..775
                     /locus_tag="PXG19_002595"
     CDS             2..775
                     /locus_tag="PXG19_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6067832.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
BASE COUNT          269 a          132 c          185 g          238 t
ORIGIN      
        1 tatgaacttg agtaatgcat taaaattaat caaatataat gaattagacg tgctagaagt
       61 taatcacaat aaattcaaag ctaaaattgc attacaagga gcacaattgc taagttggca
      121 gccgtataat gcagagcaag atgtgctgtg gttaagtgag atagaaccgt ttagaattgg
      181 ctctgcgatt cgtggcggta taccaatttg ttatccgtgg ttcggttcaa taaaagagcc
      241 tgcccacggc acagctcgca ttcaagaatg gcgtttagtt gagcatactt gttctgatga
      301 aaatgtcggt ttggtatttg ccttagagaa taaagcgaaa atggaaatga tgttaggcga
      361 aacttgtgag ttatatttta cccatttaga tccagaacca gcacaactgg cattgcactc
      421 ttattttaat attggtgata ttgaaaaagt ggaagtgcaa ggcttgccaa ctcgctgttt
      481 tgataagcta accgatcaag aagttgaagt gccatcacct cgcaagataa gtgaaaatgt
      541 ggattgtatt tatccggcac aagcggtgaa ttttattcaa gattttgcaa atcagcgcac
      601 cattaaagtt gagcatatta atgcgaccga aaccgtactt tggaatcctt ggcataatac
      661 cgttagtgcg atgacagaaa cggcgtatca aaatatggta tgtgtggaaa ccgctcggat
      721 aaatactcta cttcaacaaa atgaaacgct aggagtgagg gttttagtgc gatagtgttt
      781 aatgagagca agcagctgaa ttagtaatat tgtttacaaa ttta
//
LOCUS       DANMGB010000295          774 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.296, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000295 DANMGB010000000
VERSION     DANMGB010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.296"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(76..381)
                     /locus_tag="PXG19_002596"
     CDS             complement(76..381)
                     /locus_tag="PXG19_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL6067833.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
     gene            complement(390..665)
                     /locus_tag="PXG19_002597"
     CDS             complement(390..665)
                     /locus_tag="PXG19_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6067834.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
BASE COUNT          243 a          157 c          103 g          271 t
ORIGIN      
        1 atattccttg aataaaccgc cctcgtggcg gttttctttt cctaagaaca ataaaatcct
       61 ccgaagaggg cattattaag cgtgagcagt ttctccataa tttccaccaa aatgaaaagg
      121 cataacagga tttaaccgct gctgctttaa ctcccataaa tcatatttag tttgtaagtt
      181 tagccataac ttagccgtac taattcctgc ctcttctaaa cttaacgcta aatttgcagt
      241 cattggtgtt ttgccgtgta atactcttga taaagtttca cgagaaaacc caagatgatc
      301 tgctaattct ttaattttga tgttatttgg ttcaataaat ccatctaata aaatttgccc
      361 cggatgtgct ggtttacgca taactccccc taatgataat cttcataatt caaaatataa
      421 gcatcgccat ttacaaattc aaatgtaatc cgccagttgc cattaaccgt catagaataa
      481 atgccttttc gatttccttt taactcgtgg cattggtaaa aaggcataaa ttcatcaata
      541 ctttctgctg aatcaatcaa atctaaaata ccatcgattt tacgttgatg attaagctga
      601 ataccttttg ttattccttt ttcaaaatat tgttttaagc ctttatgctt gaagctctta
      661 atcataataa cacctagcaa acacaatgtg atacaaatat atcacgcaca ataaaaaaga
      721 caatcttttt taagtgcttt ttctcctaat tgtctttctc ttcttatgtt aagt
//
LOCUS       DANMGB010000296          773 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.297, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000296 DANMGB010000000
VERSION     DANMGB010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.297"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..119
                     /locus_tag="PXG19_002598"
     CDS             <1..119
                     /locus_tag="PXG19_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL6067835.1"
                     /translation="KSNHIEVVALRVNVDNPAYIESYELLEKLGVQIVDIRE"
     gene            121..>773
                     /locus_tag="PXG19_002599"
     CDS             121..>773
                     /locus_tag="PXG19_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6067836.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAI"
BASE COUNT          258 a          111 c          151 g          253 t
ORIGIN      
        1 ataaaagtaa ccatattgaa gtggtagcat taagagtgaa tgtagataat cctgcttata
       61 ttgagagcta tgaattgctt gaaaaattag gcgttcagat tgttgatatt agagaataaa
      121 atgaagaaat atttaatttc attagaaaaa gatgtaaaaa gacgagagct attttttagc
      181 cagcctaata cggaagattt tgaggtgttc agtgccatta atacaatgag tagtgattgg
      241 gaggcattaa ataaccattt tgatttggct ctgtttgaac agcgatatgg gcgtaaaacc
      301 actaagggcg aagtaggttg tactttaagc catttagccg tttaccaaaa aattgccgaa
      361 gatagcacta ttgcggaaga tgattactgc ctagtctgtg aagatgatgc cttatttgcc
      421 gatgatttcc aaaaacatct tgatgcttta ttagcacaaa atttaaaagt cgatattatt
      481 ttagttgggc agtcgaaaat tccaactttt aacgatagcg aattagagct taattaccca
      541 tcaacctttg gctttttgca aaaaaatatt ccgaatagcc aatataaata tgcttattct
      601 tacctgaatt attttgctgg tacggttgca tatttaatta aaaaatcgac cgcttgtcag
      661 tttttagcac aatgtgccgg aaaaaatcca tactggcttg ccgatgattt tattttattt
      721 gaaaagaatt tcaaatttga tgtgttaatt gtccgcccgt taatggcgat aga
//
LOCUS       DANMGB010000297          757 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.298, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000297 DANMGB010000000
VERSION     DANMGB010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.298"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            276..>757
                     /locus_tag="PXG19_002600"
     CDS             276..>757
                     /locus_tag="PXG19_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6067837.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     V"
BASE COUNT          254 a          124 c          170 g          209 t
ORIGIN      
        1 gcagtaacat tgacgttacc ttgcccatta aaagaacctc aagaaaatat gtggtttatt
       61 gacaatgatt ttaccatagt aaaatctatg ttcgcaaatg ccccctttgt aaaaaaattc
      121 ttgccacaag ggcgatgttt cgcttcagaa gaagacgctc aagaatggtt agatgcaatg
      181 cgaaatagtc gtaggtaaat cggcagcact aacagctgaa tgctgctgtt gaatttcttg
      241 tatatccaca taaacacgga acgcggagaa agaaaatgaa tgaagaaaaa tatttttcgg
      301 tcgatgtctc ggatgagaca catgtaataa ggttgcacga aacattagag caagcaaaac
      361 aaagctgttt aaatggtgct actgaagcct atgagtttgc gggtgacatg gatgatcacg
      421 aaagctatga aagctatgaa gcctatgatt taccctatgc agtttatggt gttgttttag
      481 gtagagcaaa atcagatatt cgtccactaa cagacgaaga aagagcatcg gagttatttg
      541 gggaagctga acaagttatt gaaccaccaa cacttttaga aaacaacggc tggatttcca
      601 ttgaggacaa attaccacct attgaaacgg atgtgctagg gttatgcgat atttcaggaa
      661 tgcagttaat tttaatagtt tcaagagaac ttgccgataa cgagtggtat tttcttagtg
      721 taaatcaata tgggcttgat gacgatgtga ttgcagt
//
LOCUS       DANMGB010000298          723 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.299, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000298 DANMGB010000000
VERSION     DANMGB010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.299"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>723
                     /locus_tag="PXG19_002601"
     CDS             <1..>723
                     /locus_tag="PXG19_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDL6067838.1"
                     /translation="GFDVILEDKKTGNLSGVNQSNIKALQFFIYQSQQTEEPLQRRFE
                     NSEIYGPFVVKSENHTYNQYFIKAVDAQKEWINTILDSPFIMAVLLMFAGIPLLIWLS
                     FKITKPVKELTISANAVASGNLETNPKLEAEWIYEIGEVGKSFNHMVISLKNLTQQQQ
                     RMISDISHELKTPLARLQLAIAILRRKTCGLAEIDRIEAEVGKLDQLIKDLLTISREQ
                     LNYQIHKKIFVIDEIWNNVIED"
BASE COUNT          271 a          103 c          127 g          222 t
ORIGIN      
        1 atggatttga tgtaatccta gaagataaaa aaactggtaa tttaagtggc gtaaaccaaa
       61 gtaatattaa agcattgcag ttttttattt atcaatcaca acagactgaa gagccgttac
      121 aaagacggtt tgaaaatagt gaaatctatg gtccatttgt cgtgaaatcc gaaaaccata
      181 cttataacca atattttatt aaagcggtag atgctcaaaa agagtggatt aatacgattt
      241 tagactcacc ttttattatg gcagtattac ttatgtttgc cggaattcct ttattaatat
      301 ggttatcctt taaaattacc aaaccggtta aagaattaac tatctcggca aatgcggtag
      361 cctctggtaa tttggaaact aatcctaaat tagaagcaga atggatctat gaaattgggg
      421 aagttggaaa aagctttaat catatggtga taagcttaaa aaacttaact cagcagcaac
      481 aaagaatgat ttcggatata tctcatgagt taaaaacacc tttagccaga ttacaactcg
      541 ctattgctat attacgccgt aaaacctgtg gtctggcaga aatcgatcgc attgaagcag
      601 aagtaggtaa attagaccaa ttgattaaag acttgttaac aatatcacgt gaacaattaa
      661 attatcaaat tcataaaaaa atttttgtaa ttgatgaaat ttggaataat gtaattgaag
      721 atg
//
LOCUS       DANMGB010000299          705 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.300, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000299 DANMGB010000000
VERSION     DANMGB010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.300"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            293..>705
                     /locus_tag="PXG19_002602"
     CDS             293..>705
                     /locus_tag="PXG19_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6067839.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTA"
BASE COUNT          224 a          152 c          137 g          192 t
ORIGIN      
        1 tcattcgtgt attgtaatct cgcaattcaa catcactaat aaaaaattct ccaacatatt
       61 cagagagttt tttctactga taccaactaa attttggttc aatactcgaa gttaaatttg
      121 gttcagagaa aaaagcctct aaatggcaaa agggtaaggg gccctaacgg gcaagggtaa
      181 tcccctaagg gggataagag taacctttcc aaggggaaag gtcttaccca aaagggcaaa
      241 gggctaaacg gctttctttc aacgcaaaca tcatcttttt cggtctattt caatgcactc
      301 aattctcaaa aaaattcttg gcaaaagtaa atcctcgtct caaagttcgg ttaaatctga
      361 caatgttttc gctattgagc aggatagtga gggctggtta tatccgaaaa atgcctccca
      421 actacttaat acggaattac gccaaaaata tctgggtcta ctttggcaac aggtatcaat
      481 gaaccgtcaa atgtttgagg cactttatca acagccaata gagcgttatg ccgaaatggt
      541 gcaactgtta cccgcttccg agtcacatca tcattcacat atcggcggaa tgctcgatca
      601 cggtttggaa gttattgctt tttcagccaa agtccgtcaa aactatatat tgccaccgaa
      661 tgtcgcacct gaagaacaat ctaagcaacg agacgcttgg actgc
//
LOCUS       DANMGB010000300          702 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.301, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000300 DANMGB010000000
VERSION     DANMGB010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.301"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            40..>702
                     /locus_tag="PXG19_002603"
     CDS             40..>702
                     /locus_tag="PXG19_002603"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6067840.1"
                     /translation="MNELRLLRQKKLKRLIDEVSEGNIADFARKIGKEPSYVARMLYP
                     SDKAGAKPIGEKMALHICHKFVLPLDWFNRDDDGEFIQINNGEEDNIILSVLNIQASA
                     GIGAKNGDVMEVIREIKFNPEQFYNLFRGITPEHIELISVKGDSMEPTFSHGDLLFVD
                     VTIQEYDGDGVYVFTCDDYIFVKRIQKTGRHFTILSDNDRYKPWQLDQEIYIHGKVKV
                     HQS"
BASE COUNT          246 a          105 c          146 g          205 t
ORIGIN      
        1 gagtacaatt actaaaaagt aatccttaga ggaggttata tgaatgagtt gagacttctt
       61 agacaaaaaa aattgaaacg cctaattgat gaagtgagtg agggaaatat tgctgacttt
      121 gcaagaaaaa taggtaaaga gcctagctat gtagcaagaa tgttgtatcc gtccgataaa
      181 gctggagcta agcctattgg tgaaaaaatg gcactccata tttgccataa atttgtgcta
      241 ccccttgatt ggtttaatcg agatgatgac ggcgaattta ttcaaatcaa caatggtgag
      301 gaagataata tcatcttaag tgtattgaat attcaagcat cggccggtat aggagcaaaa
      361 aacggtgatg tgatggaagt cattagagaa attaaattca atccagaaca attttataac
      421 ctatttagag gtattacgcc tgaacatatc gagctgatca gtgtaaaagg cgattctatg
      481 gagccaacat tctcacacgg tgatttgctt tttgttgatg taactatcca agaatacgat
      541 ggcgatggtg tgtatgtttt tacttgcgat gactatattt ttgtaaaaag gattcaaaaa
      601 acaggcagac actttactat tttatctgat aatgaccgct ataaaccttg gcaattagat
      661 caagaaattt atattcacgg caaagttaaa gtccaccaaa gc
//
LOCUS       DANMGB010000301          692 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.302, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000301 DANMGB010000000
VERSION     DANMGB010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.302"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..446)
                     /locus_tag="PXG19_002604"
     CDS             complement(<1..446)
                     /locus_tag="PXG19_002604"
                     /inference="COORDINATES: protein motif:HMM:NF016343.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6067841.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFADD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEAEQVIEPPTLVENNG
                     WISVKDRLPEIRKEVLITNNFIMIAQFNGESWFKPGGFLGIQPVYGV"
BASE COUNT          202 a          144 c          116 g          230 t
ORIGIN      
        1 acaccataga caggctgaat acctaagaat ccacccggct tgaaccagct ctcgccattg
       61 aattgagcaa tcataataaa attgtttgtt atcaagactt ctttgcggat ttctggcaat
      121 ctgtctttga ctgaaatcca gccgttgttt tctacaagtg ttggtggttc aataacttgt
      181 tcagcttccc caaataactc tgattctctt tcttcatcgg ttagtgggcg gatatctgat
      241 tttgctctac ctaaaacaac accataaact gcatagggta aatcataggc ttcatagctt
      301 tcgtgatcat ccatgtcatc cgcaaactca taggcttcag tagcaccatt taaacagctt
      361 tgttttgctt gctctaaggt ttcgtgcaga tttaggatat gtatatcatt tgatacatcc
      421 accgaaaaaa atttgtcttc attcattttc tttctccaaa ataccaatag ttgagagaat
      481 aataagcata ctatctcatg ctattcttaa gtgcatctaa ccacgctcca gcatcttcgg
      541 ctgaagcgaa atataaccct tgatcaaata gtttttctat ataagaatgt gtagggaaat
      601 ttgattttat cacattgaaa ttatcgccaa taaaccacat tccatctctt ggttctttta
      661 atggacaagg aagagtgaga gttactgtag gt
//
LOCUS       DANMGB010000302          648 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.303, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000302 DANMGB010000000
VERSION     DANMGB010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.303"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(19..303)
                     /locus_tag="PXG19_002605"
     CDS             complement(19..303)
                     /locus_tag="PXG19_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067842.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
     gene            complement(321..482)
                     /locus_tag="PXG19_002606"
     CDS             complement(321..482)
                     /locus_tag="PXG19_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL6067843.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
BASE COUNT          202 a          112 c          103 g          231 t
ORIGIN      
        1 cactcctctt tcacatcact aacgtcgata aaaacctctc cttactgacc tgtgataggt
       61 gtatataaac tcatctaaat ctataggaat atctgaatta atgatttctt gtagaaagag
      121 cataaaatgc tctaactgtt ctagtctctt atctgtttcc ttttttgact caaaacgctt
      181 ttgcttaaaa cgaacttcta tcgaatctac accgatgtaa attcgatgtt cctgcatttt
      241 gagtagtcgg acagtttcaa aaaaatgttt aggggtgatg tgagaaaggg ttatatttgc
      301 catagtttag cttgaaaacg ctatttatta cttgttttag caacatacaa agaatacttt
      361 tttaaagcct ctagcattac taaattaggc tctttaggat gttctaagct ctcaagaatt
      421 agcatttgat tttcaagaga aagctttaga acaagatttg aactattctc tattttttcc
      481 attttaatta tctcattaga tgactttcgc ataacaacag gttatgtgta aattctcgtg
      541 cagtgggaca agcccgattg tactgcactc gaattgtaac ataacctgta ggacattatg
      601 cgaaaattaa taatataagt ttttcatcaa tcggcggtat tattgaat
//
LOCUS       DANMGB010000303          645 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.304, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000303 DANMGB010000000
VERSION     DANMGB010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.304"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(35..>645)
                     /locus_tag="PXG19_002607"
     CDS             complement(35..>645)
                     /locus_tag="PXG19_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067844.1"
                     /translation="NIFFFEKGFFNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIID
                     TINEGLDLDIAIENFEVLSQEEMTECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDN
                     SELILLAKQPMVEEIIPKPDSKASSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQ
                     NIARVANVVYNLLPGMVRIFVSYDTVENFLLNNRQWLINKLV"
BASE COUNT          213 a          128 c           83 g          221 t
ORIGIN      
        1 ttatattgtt tatccatagt tcttcccctc caaattaaac taatttatta atcaaccatt
       61 ggcggttatt taataagaaa ttttctacgg tatcgtaact tacgaaaatt cttaccatgc
      121 ccggcaataa gttataaacg acatttgcta ctcgtgcgat attttggtcg ttttgtaatg
      181 ccacagcact taattgcaaa ccactttctt ttaatttagc aattaagata tttgagtttg
      241 aatcaaagaa ttttagaatt gcagaggagg ctttgctatc tggtttaggg attatctctt
      301 caaccatagg ttgtttagca agtaagatta gctcactatt atcttcataa aagctattta
      361 tttcatcaac atttaataaa ccaatttcgc cttcttcagc tttcttaatg agagcctgct
      421 catataaacc catacattca gtcatttctt cctgactcaa cacttcaaag ttctcaatcg
      481 caatatctaa atctaaaccc tcatttatcg tatcaataat ttctggaaaa acctttccta
      541 ccaaactagg gaagtctaaa aatccattaa acgcaccagt cccgagaata gtgataaatt
      601 cgggaaaaaa gttaaaaaac cccttttcaa agaagaatat atttc
//
LOCUS       DANMGB010000304          644 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.305, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000304 DANMGB010000000
VERSION     DANMGB010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.305"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>644
                     /locus_tag="PXG19_002608"
     CDS             <1..>644
                     /locus_tag="PXG19_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6067845.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANMGB010000305          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.306, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000305 DANMGB010000000
VERSION     DANMGB010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.306"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..493
                     /locus_tag="PXG19_002609"
     CDS             <1..493
                     /locus_tag="PXG19_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067846.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..>643
                     /locus_tag="PXG19_002610"
     CDS             504..>643
                     /locus_tag="PXG19_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067847.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYS"
BASE COUNT          182 a          127 c          160 g          174 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttc
//
LOCUS       DANMGB010000306          642 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.307, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000306 DANMGB010000000
VERSION     DANMGB010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.307"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            20..580
                     /locus_tag="PXG19_002611"
     CDS             20..580
                     /locus_tag="PXG19_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067848.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
BASE COUNT          272 a          103 c          154 g          113 t
ORIGIN      
        1 tttatttaag gaactcggta tgaaaaaatc atttttatca ttattagtgt taggtacaac
       61 tatggcactt gctgcttgtg atcaggcaaa agaagccgcg caatcaacta cagacaaagc
      121 ggttgaagta aaagaagctg tagctgaaaa agctgcagaa gttaaatcgg ctactgaagc
      181 gaaggttgaa gagttgaaag cggcagcaaa tgatgcagct caagcaacag cagataaaac
      241 agaagaggca aaaaaggcag tggcagagaa agccactgag ttaaaaacca caactgaagc
      301 taaagtggaa gaactaaaag cagcagcaaa tgatgcagct caagcaacaa cagataaaac
      361 agaagaggca aaaaaggcag tagcagagaa agctgctgag ttaaaagcca caactgaagc
      421 taaagtggaa gaactaaaag cagcagcaag tgatgcgact caagcaacag cagataaagc
      481 agaagaagct aaaaaggcag tagctgagaa ggcagcagaa gtgaaagttg agacagaaac
      541 aaaagttgaa gaaatgaaaa aagcgattga aagcaaatag tgctttttag tttctctgta
      601 gctatcgaaa cacgctaaaa ataaagcctg gattataatc ca
//
LOCUS       DANMGB010000307          639 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.308, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000307 DANMGB010000000
VERSION     DANMGB010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.308"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            67..>639
                     /locus_tag="PXG19_002612"
     CDS             67..>639
                     /locus_tag="PXG19_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067849.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKL"
BASE COUNT          218 a           86 c          147 g          188 t
ORIGIN      
        1 tagcctatga cgtctcgtag taaacagcta gtttgtaaga atagatattt ggaagggaaa
       61 cgtaaaatga gagaaccatt attagatgaa gatgaattaa aaaaatggtt gcaaactatt
      121 tttactgaca atttggtcat tattgtcggt tcgggtttgt cctgtgccga aggtttgccg
      181 ggaatgggag cattagctga tagattaaaa gaacgaatgc ctgaatgtct tgatgatata
      241 gataaggtaa catggaatac catttctgat tgtctggatt ctgaaggctt ggaaggtgca
      301 ttgttgaagc atcaagcaaa tgagacgata gaagccgcta ttattaaaat aacagccgag
      361 tatgtactct ccgaagagca aaaagcgata aacaaatgta ttgctgagaa tcagaagctc
      421 aaattttctt atttgcttcc ccatatttca gcttcaaatc ctaaaattgc ccgtgtaatt
      481 actactaatt atgatagatt gattgagttt gcggcagagt atgaaaattg gggaatagat
      541 tcaatgatgg tcggtcgtta ttggggaaaa cataatcctg atttgagtag gaaattgcag
      601 ataagagaca ttagagtaaa aggtaaatgt ccaaaattg
//
LOCUS       DANMGB010000308          639 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.309, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000308 DANMGB010000000
VERSION     DANMGB010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.309"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>639
                     /locus_tag="PXG19_002613"
     CDS             <1..>639
                     /locus_tag="PXG19_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6067850.1"
                     /translation="SLEGFKMKVVHNGLEGLNELESNQYDLVLLDVMMPVLSGVKTLK
                     RIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKPFNNRELVARMKAILRRTTSRP
                     ASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGCDLDLTGTEFALLQMLMRNSGE
                     ILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPEREDGLPWFKTLRGRGYL"
BASE COUNT          221 a           93 c          129 g          196 t
ORIGIN      
        1 tcattagaag gatttaaaat gaaagttgtg cataatggtt tagaaggctt aaatgagtta
       61 gagtctaatc aatatgattt agtattacta gatgtgatga tgccggtatt aagtggcgtg
      121 aaaacattaa aacgtatacg acaaaaatac tcattacccg ttttaatgtt aagtgcaaga
      181 gatgatcaaa ttgatagaat cttaggttta gaattagggg ctgacgatta tgtaccgaaa
      241 ccttttaata atcgtgaact agtcgctaga atgaaagcga tacttcgaag aacaacctct
      301 cgcccagctt caacagacca ttctgaacag aattatactg aaaacatctc taaatcatta
      361 caatttgccg gagttgaatt acattcagga cgtcagcagg cttattatca aggatgtgat
      421 cttgatttaa cggggactga atttgcatta ttacaaatgt taatgcgaaa ctcaggggag
      481 attttgtcca gagaattatt gagtttaaaa attttaggga aaaatttaac gccttatgat
      541 cgtgcaattg atatgcatat ttctaatctt cgtaaaaaat tacccgaacg ggaagatgga
      601 ttaccttggt ttaaaacctt aagaggtcgg ggttactta
//
LOCUS       DANMGB010000309          635 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.310, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000309 DANMGB010000000
VERSION     DANMGB010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.310"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..267
                     /locus_tag="PXG19_002614"
     CDS             <1..267
                     /locus_tag="PXG19_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067851.1"
                     /translation="ENLYGFLRDGATLVANGIVNEPSVDCFSQEIAQFTGCHIFSSLY
                     IAFNTQRSFKSHWDSRDIFAVQMQGKKRWIIHTPTFKKTIVYAS"
     gene            257..>635
                     /locus_tag="PXG19_002615"
     CDS             257..>635
                     /locus_tag="PXG19_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL6067852.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYHKFIENFYDQKRVEKPLNLE"
BASE COUNT          206 a           89 c          127 g          213 t
ORIGIN      
        1 gaaaatttat atggtttttt aagagatggg gcaacattag tcgcaaatgg tattgtaaat
       61 gaaccaagtg ttgattgctt ctctcaagag atagctcaat ttacaggctg tcatattttt
      121 tcaagtttat atattgcgtt taatactcaa agatctttta aaagccattg ggatagtcgt
      181 gatatttttg cagttcaaat gcagggtaaa aagcgttgga ttattcacac tccaacattt
      241 aaaaaaacca ttgtttatgc atcgtagtaa agatatgcct gaatatgctc ctaatcttga
      301 tgatgtatat atggatattg tattagaagc tggagatgtt ctttatttac ctcgtggctg
      361 gtggcacgat cctattcctg ttggagaaga aactgtgcat ttagctgtag gcatttttcc
      421 tgcttatact cataactatc tgacttgggt atctcaaaat atggttgaga aagaaattgc
      481 ccgagcttct ttatcgcatt atgagtcaga taaagagttg atagcacagt tggcagaaca
      541 aacagcagaa tatattaaag ataaagagaa ttatcataaa tttatagaga atttttatga
      601 tcagaagcgg gttgaaaagc cacttaattt ggaaa
//
LOCUS       DANMGB010000310          608 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.311, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000310 DANMGB010000000
VERSION     DANMGB010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.311"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>608
                     /locus_tag="PXG19_002616"
     CDS             <1..>608
                     /locus_tag="PXG19_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6067853.1"
                     /translation="IQGNLVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQGIDDWEN
                     SNFNFRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNYHLVVA
                     KMSYENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVPALKESL
                     ENQESFPSRLYQKFNIFNQAIAQTTSNITKEEIDDLEKTVEN"
BASE COUNT          229 a          101 c           95 g          183 t
ORIGIN      
        1 attcaaggta acttagtaac agccattcct aacttcctgg agaaagttaa taatgatttt
       61 gctataagtg ctagaaatag agacttatat agtcactacc ttccttatca gggtattgat
      121 gattgggaga attctaattt taactttcga acactaaatg gagtttatta tgatgataat
      181 ctaacttcaa cagaactcct gcgaaaattt atgattcaaa gagattataa cactctttat
      241 gctctaagtt ctgctcgcac aggaaatgct gatagtctgg ctaaaaatta ccatcttgta
      301 gttgcgaaaa tgtcctatga aaacctgaaa aaagaattat ccaagaaacc cgactctaca
      361 tttaataaac tgaaaaagct gtatgaaacc aatggtgaat tcttaaatga atatatttta
      421 gacaatttcc gaggaaatcc acttgaatta ttaacagtac ctgcgcttaa agaaagttta
      481 gaaaaccaag agtcattccc tagcaggctg tatcagaaat ttaatatttt caaccaggct
      541 attgcacaga ccacatcaaa cattactaaa gaagaaattg atgatttaga aaaaactgta
      601 gaaaattt
//
LOCUS       DANMGB010000311          593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.312, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000311 DANMGB010000000
VERSION     DANMGB010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.312"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>593)
                     /locus_tag="PXG19_002617"
     CDS             complement(<1..>593)
                     /locus_tag="PXG19_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067854.1"
                     /translation="RILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRW
                     KRVDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKI
                     LGNKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNL
                     HIDNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQS"
BASE COUNT          193 a          150 c           89 g          161 t
ORIGIN      
        1 gattggcagt tttgtacaat cacattatca gttgggtaat tagtatccgc ctgaatactt
       61 tcacctgccc tgaccccgta gaaggtgcca ttaaacacaa cattgtcaat atggagattt
      121 ttaacaccag catcatccaa agacttaaat cgaataccaa ttgctttgtt cggtgtttca
      181 atacaaaaac ccgagataaa ataattgctg tgattaatat taaaaacttc ggcccctgct
      241 tgctggatac ctgcacctaa tactaatttg ccggtcttat tgcccaaaat tttcacatta
      301 tcgcgaacag aattaacggc attgttgata cgaaatgtac cgttttcgat aaaaaattga
      361 gaatatctca tagcatttac aaatgctgat tcatcatttg ttaccccgtc accgacggcc
      421 caaaaatcaa ataatgtaag atgtgaaagg tcaacacgct tccaccgccc cccattatta
      481 ttcacaacaa aacaaacccc accatcatca ggcgtaacta aatcctgcaa atcagccaca
      541 aactccccac cgcctgttgt gccgtcctca tagtaagcat ccaccaaaat acg
//
LOCUS       DANMGB010000312          592 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.313, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000312 DANMGB010000000
VERSION     DANMGB010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.313"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..309
                     /locus_tag="PXG19_002618"
     CDS             <1..309
                     /locus_tag="PXG19_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6067855.1"
                     /translation="ERVLACLIYLRKFGYSLGRPYADTVYQSKFPNMKELRIQNKGKP
                     IRAFYAFDPLRQAIVLCAGEKGKDKRFYEKMIALADAEFTSYLNNLEKENENVRSNAQ
                     "
     gene            281..580
                     /locus_tag="PXG19_002619"
     CDS             281..580
                     /locus_tag="PXG19_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6067856.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          203 a          109 c          114 g          166 t
ORIGIN      
        1 gaacgtgtct tggcttgttt aatctatctg cggaaattcg gttatagtct aggcagacct
       61 tatgctgata cagtttatca gtctaaattc cctaatatga aagagttacg cattcaaaac
      121 aaaggtaagc caattcgagc attttatgct tttgaccctt tacgccaagc gatagtactt
      181 tgtgctggcg agaaaggtaa agacaaaaga ttctatgaaa aaatgatcgc tcttgctgat
      241 gcggaattta cctcctattt aaataattta gagaaagaaa atgaaaacgt tagatcaaat
      301 gctcaatgaa ctctctcctg aacgccgcca aaaagtggaa gatatggctc aagaaatgat
      361 tagagagata caactttcaa aactaagaga agagctaaat ctctctcaac aacaattagc
      421 tacagctctc ggtatttcac agcctgctat tgctaaactt gaacagaaag ataacgatcc
      481 aagattatcc acgctcaaac gctatattga agcaatgggc ggtaagttaa aacttgccgt
      541 tgaattgcct acaggcgatg agcgtgtaat taggatttaa ttactttgtt aa
//
LOCUS       DANMGB010000313          586 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.314, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000313 DANMGB010000000
VERSION     DANMGB010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.314"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..341
                     /locus_tag="PXG19_002620"
     CDS             <1..341
                     /locus_tag="PXG19_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067857.1"
                     /translation="IIHECAHTALNIINATDELVTNSADERFKAPLRKDTRPMIGLFH
                     ALFVLHRICSSFQKMKEKIDDVYYDEFNHRLNDNLLKLHETYQTVRENAKTTEIGEKI
                     LNEIAKTWKL"
BASE COUNT          199 a           74 c           93 g          220 t
ORIGIN      
        1 atataattca tgaatgtgct catacagctc ttaacattat aaatgcaact gatgaattag
       61 taacaaattc agctgatgaa cgttttaaag cacctttaag aaaggatact cgtcctatga
      121 ttgggctatt tcatgcgttg tttgtactcc atagaatatg ttcctccttt caaaaaatga
      181 aagaaaagat agatgatgtt tattatgatg aatttaacca tagattaaat gataacctgt
      241 tgaagttaca tgaaacatac cagactgtta gagaaaatgc aaaaacgaca gagattggtg
      301 agaaaatttt aaatgaaatt gccaaaactt ggaaacttta atcaatctga aattatgatg
      361 agaatgttag ttttctttaa ttcaatattc tcatctacat taattgcttt tgctattttc
      421 ttttttatgg ataatggtat aaatgctcat gaggtatcat tcttggtatc tgttaaattt
      481 tgggcgatta tgcttttttc attgtctatt tatattttta accagactca aataaggtac
      541 ttatttgtat tgtcgggtat attaaagatt attgcagtta ttatta
//
LOCUS       DANMGB010000314          584 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.315, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000314 DANMGB010000000
VERSION     DANMGB010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.315"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..512)
                     /locus_tag="PXG19_002621"
     CDS             complement(<1..512)
                     /locus_tag="PXG19_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067858.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFY"
BASE COUNT          229 a          102 c           90 g          163 t
ORIGIN      
        1 aaataaaaaa tgcttaattg gaaaaaggcg gaagaagtga tgttatataa acggtattct
       61 tgttccgaac caaaaaaacg tggcatcatt gcattgctgg ataataaaaa atccaccata
      121 aacggcaaac ctaataaggc tgtcacacca caaatccatt gaatagcaat gccgattttt
      181 aaatcacgaa cgaataaagt tttaccttgt tggttatgat aaaaaacatt ataaatcgca
      241 atcccgaaca caaacaaaat cagcattttg acatacattg ccagcacacc aatttctttt
      301 gtactgttaa tcaataatgg aataatgcta aagccgatta atgcaataat tgcaatcagg
      361 ctatctttag gaataataat gccattcgat ttgcccttga ttatttggaa aaccaaatag
      421 ccacaagcaa caagcccgac tacaaacgac attcttaaaa aatggaaaaa ccacggatcg
      481 taaagataaa ataagttaat gagtgctgac atttcagacc tattatgaat ttcgctgagt
      541 aaaattacgt ttaattgcca gtaatttttt aagtggatat ttta
//
LOCUS       DANMGB010000315          571 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.316, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000315 DANMGB010000000
VERSION     DANMGB010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.316"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..550)
                     /locus_tag="PXG19_002622"
     CDS             complement(<1..550)
                     /locus_tag="PXG19_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6067859.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYT"
BASE COUNT          208 a          118 c           76 g          169 t
ORIGIN      
        1 ctgtgtacca agccgtactg ataaggcgag ctatctcact acgaataaaa tagcaattcg
       61 tatcaatatg ctgacaatca ttcagattta ttgataaaac acctttaaca ccacctaatt
      121 gataattaca ttctaatggt tcttgataaa cgcaattata ttctcccaac gattcaatcg
      181 tatcaataca caaaaactcg ccatctaaat cataaaaatt acgtaaagag taagcataat
      241 cagattgcat ttctaataaa gcatgcacac cagattcaac gtgagtaggt tcaaaccaat
      301 tatcatcatc cagataacaa ataatatctt ctttcactaa aaatggtgca attgcattaa
      361 tgctgctatt tacccaacca tcagccccgg tattcattgg gagataagta acaataacac
      421 ttggaaaatt ctttaaaata tcagccgctt gttggtgata tttctctcca tcaacaaaaa
      481 cataatgttt acaaggataa gtctgatttt gtacgcttaa aacagctctt tctaattcag
      541 gacgaccaat tgttgaactg ataacagcta c
//
LOCUS       DANMGB010000316          570 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.317, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000316 DANMGB010000000
VERSION     DANMGB010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.317"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>570)
                     /locus_tag="PXG19_002623"
     CDS             complement(<1..>570)
                     /locus_tag="PXG19_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067860.1"
                     /translation="CSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYFIGSTIDA
                     IFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSPQFIAKNL
                     TMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQPIIAKAKS
                     YQKSIEFSFDDTISVIAAPITIPASIILFV"
BASE COUNT          182 a           91 c           91 g          206 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc atagtgagca
//
LOCUS       DANMGB010000317          537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.318, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000317 DANMGB010000000
VERSION     DANMGB010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.318"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            197..>537
                     /locus_tag="PXG19_002624"
     CDS             197..>537
                     /locus_tag="PXG19_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_046701250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6067861.1"
                     /translation="MKITHCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFY
                     HKIRLVIEHHLALEAHEIFEGKIEVDESYFGGHRKGKRGRGAAGKVAVFGLLKRQGKV
                     FTKYQIRNANAG"
BASE COUNT          185 a           83 c          120 g          149 t
ORIGIN      
        1 attttgagaa aaaaccactt ttaatgaaag gagcaatatc tcagaaagat ttactttctt
       61 ggaagtcaat aaatgaaata ttacctcgct gtgatttaat ttctgaggat gcaattaagg
      121 taatgcataa agggaaaagg gctcataaaa aagattaggg gctgtagtag attagcatca
      181 ctgctatact acaaaaatga agataaccca ttgtaaatta aagaaatctt tgcagaaaaa
      241 gcttcttgaa ttttttgttg ctgaagtgac cgctagaacc gctgctgatt tattaggtat
      301 tcaacccaat acggcagccc tgttttacca caaaattagg ctggtcattg aacaccattt
      361 agcccttgaa gctcatgaaa tttttgaggg aaaaattgag gtagatgaaa gctattttgg
      421 tggtcatcgc aaaggaaaac gagggcgagg tgcggctggg aaagtcgctg tattcggttt
      481 gttgaagcgt caaggaaagg tgtttacaaa ataccaaatc agaaacgcta atgccgg
//
LOCUS       DANMGB010000318          531 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.319, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000318 DANMGB010000000
VERSION     DANMGB010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.319"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>531)
                     /locus_tag="PXG19_002625"
     CDS             complement(<1..>531)
                     /locus_tag="PXG19_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067862.1"
                     /translation="IAFDSIRSAQNCTVLGLDISKFFDHIDHKILKDMWCKVLGVPSL
                     PEDHHSVFKAITKFVKVDRDTVFEFFNISLHNPRKNGKNRICSPREFREYRKLKKPDL
                     FNDNPAFFINKGQKGIPQGSPISALLSNIYMLEFDVLVKEKIMECKGSYFRYCDDILC
                     IIPNEYEEFILDYITG"
BASE COUNT          183 a          101 c           72 g          175 t
ORIGIN      
        1 tccccagtga tgtaatcgag aataaattct tcgtattcat taggaatgat acatagaatg
       61 tcatcacaat aacgaaaata actccctttg cactccataa tcttttcttt aactaacaca
      121 tcaaactcta acatatagat attggataac aatgcactta ttggagaacc ttgaggaatc
      181 cctttctggc ctttattaat aaaaaaagct ggattatcat taaataagtc aggtttcttt
      241 aatttcctat attctcgaaa ttcccgaggg ctacaaattc tattcttccc atttttccta
      301 ggattatgaa gggagatatt aaagaattca aatacagtat ctctatctac ttttacgaat
      361 ttagtaatag ccttaaatac agaatgatgg tcttcaggta aactaggtac acccaaaact
      421 ttacaccaca tatctttcag aattttatgg tctatatggt caaagaactt agatatatct
      481 agccctaaaa ccgtgcaatt ttgagcgctt cgaatactat caaaagcgat t
//
LOCUS       DANMGB010000319          511 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.320, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000319 DANMGB010000000
VERSION     DANMGB010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.320"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          196 a           77 c           79 g          159 t
ORIGIN      
        1 attagcagta ttaaggatta ttacgatcta gcagaagggt ttagaaatgg cataaagtct
       61 aatgattggg aacctttttt aaagacatct gctcagatag gtgcttcagc tttaatgagt
      121 atgttagtag cctcaatgat aacaggccca acgacaattg ggagtattat tattagtgct
      181 gcatttattt ctataggggg atatattatt tcactagctt cccgttagat agtctttgtt
      241 atactcaata acctactata ctacctatag gctattgaac tatcatacat cagctctatt
      301 aaccaaaaaa acaaaaaaaa atattgcaaa taaaaataaa attattgaga taggtccaga
      361 gtacataatt aactcatact tttttttaag tttaatccta agagcctgag ctacaaaagg
      421 atataaaaat aaattaacca gcaaatataa tagagttata aaataaatga aaaatgtatt
      481 tgaattccag gcctcaaagc tacgcaaatc a
//
LOCUS       DANMGB010000320          510 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.321, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000320 DANMGB010000000
VERSION     DANMGB010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.321"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>510)
                     /locus_tag="PXG19_002626"
     CDS             complement(<1..>510)
                     /locus_tag="PXG19_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL6067863.1"
                     /translation="SKDLGITIKSPEQAATYVNDERYRRFNTLIDKKFNDSVLIELLN
                     CFEKRDDKRIEELVTDEAAIPTIFEYILGIIWYKVSERQGNILDFMKLSLEANLLPKT
                     HAAGGYADIIYEYEACTSYPKHSLLLEATLADGNNQRRMEMEPVSRHLGDYRIRFNNP
                     FDYSLFVST"
BASE COUNT          154 a          103 c           69 g          184 t
ORIGIN      
        1 tatgtgctaa caaataggct gtaatcaaac ggattattaa atctaatcct ataatcgcct
       61 aaatgtcttg aaacaggctc catttccatt cttctttgat tatttccatc tgcaagggtt
      121 gcttcaagca ataatgaatg tttcggataa gaggtgcacg cttcatattc atatataatg
      181 tctgcgtaac ctccagctgc gtgggtcttc ggcaataaat tggcttctaa tgataacttc
      241 atgaaatcca aaatatttcc ttgtctttcg ctcactttgt accatataat tcccaaaata
      301 tattcaaaaa tagtaggtat tgcagcctca tctgtaacaa gttcttcaat ccttttatca
      361 tcacgtttct caaaacaatt tagtaactct ataagcacag aatcgttaaa tttcttatcg
      421 atcaaagtat taaatcttct gtatcgttca tcatttacat aagttgcagc ttgttccgga
      481 ctcttaattg taattcctaa atctttactt
//
LOCUS       DANMGB010000321          485 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.322, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000321 DANMGB010000000
VERSION     DANMGB010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.322"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          156 a           79 c           98 g          152 t
ORIGIN      
        1 gaaagaacca tcaattttac aattaagctt agtagttgga gggaattctg aaaataaggc
       61 taatcaacca gatcttgtat cttatggcgt tgcttttgct acagggtttg caagaggggg
      121 gctttaggcg gtttatccag tacttctgtt aatttagccc ttgatttagc gaggagccta
      181 cctattacaa tacatgaaaa ttctttacct agcggtgtaa aagaattaat tccatcatct
      241 ttaccaataa agcctacgtt tggagttcca ggtagaacga ataataacca atctggctca
      301 aactacgatt gtggtgatgg tacagattat caaggctagt ggagatgaaa atgaaaattc
      361 aatttccaat ttcttatcaa gaatttcgtg aaagttattc tgagaaacaa ccacttttaa
      421 tgaaaggtgc tatagagtag caagatttac tttcttggaa ggctatcaat gaagtattac
      481 ctcgt
//
LOCUS       DANMGB010000322          482 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.323, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000322 DANMGB010000000
VERSION     DANMGB010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.323"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          172 a           89 c           80 g          141 t
ORIGIN      
        1 catcaggtaa attttctaac ttccatcttc gtttttctaa aatcgaaaag taatactggt
       61 catcgtctaa aatctcaata tatgtacttc caaagagaac ttttgtataa ggcgtatcat
      121 gatagatcgt gacatcagcc ttcaatttgt actcgccttc catgcattcc ccaaaatggt
      181 attgactaaa aacaatggtt atgatataat gacatggggc ttgaaaagca agctgattgc
      241 tcaataggta atcagaccac tttgaaagct cggtcctttt caaaagaaaa ggtcttacta
      301 attactcaca aaatctggag aacaatatga aaaacactac agcgcaacaa aagccaatga
      361 aagttacagc taaacatatt agagaatcta ctactcgttg ttaagagctt agctttgata
      421 taaaaagacc aactttttat atcggcgtag taggtctaat ttgagcctac gaaatgaaag
      481 tg
//
LOCUS       DANMGB010000323          475 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.324, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000323 DANMGB010000000
VERSION     DANMGB010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.324"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(181..420)
                     /locus_tag="PXG19_002627"
                     /pseudo
     CDS             complement(181..420)
                     /locus_tag="PXG19_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT          147 a          101 c           66 g          161 t
ORIGIN      
        1 aaaataatgg cataagtgac tcacttatgc cattttttat atgctttaac gtttattaaa
       61 aatcttaaaa atattgttgg cttcctctaa ataatgcaag attttccgca ctcatattgc
      121 cgttaccaac acctgctacg acaatacctt gatagcctac atctaacaag gctttagtgg
      181 gccaattttc acaatctgct cacctttgat attcgccaat gttttcattt ctggcactgc
      241 ttcaattaag gtttcgatat tcaattgccc tgcttgataa gcactactat ttgcattctg
      301 ctgactacca gcaatcgttc cgcctgtcgc taaaatagtg atattaggta attctgccgc
      361 attagctgtt acaaataagc cacctaacat tgctgctaat gctaattttt tgaatttcat
      421 ataaggctcc ttaattaaaa aaactaaaga cagataatac cgataaatca atgta
//
LOCUS       DANMGB010000324          458 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.325, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000324 DANMGB010000000
VERSION     DANMGB010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.325"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(13..>458)
                     /locus_tag="PXG19_002628"
     CDS             complement(13..>458)
                     /locus_tag="PXG19_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6067864.1"
                     /translation="AATGSRVSELIQIKCEHIKIGYLDLYSKGGKLRRIYIPKSLQKE
                     CSEWLRLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAK
                     SFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIIDW"
BASE COUNT          143 a           83 c           63 g          169 t
ORIGIN      
        1 gccccttaaa aattaccaat caataatttt attcacaatt tcctgctgtt ctgtgcttgt
       61 ttttcgtaaa tagatccttg tggtttctat gctttcgtgc cccattaaat cagcaagaaa
      121 agcaatatca ttaaatcgtt ctaaaaaact ttttgcaaaa cgatggcgaa atgaatgtgg
      181 ataaacaatt ttaggatcta atttatagcg tctagcaaat acttttaatt ggctggcaat
      241 gccacgagta gtaattctat caccatattt atttaagaaa ataaatccat tatgcttatt
      301 atttaatctc aaccattcag aacactcttt ttgcagagat tttgggatgt aaattcgtct
      361 taattttcca cctttagaat agaggtctaa atagcctatt ttaatatgtt cacattttat
      421 ctggattaat tcacttactc tcgaacctgt tgctgcca
//
LOCUS       DANMGB010000325          444 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.326, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000325 DANMGB010000000
VERSION     DANMGB010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.326"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            186..434
                     /locus_tag="PXG19_002629"
     CDS             186..434
                     /locus_tag="PXG19_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067865.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
BASE COUNT          132 a           47 c          125 g          140 t
ORIGIN      
        1 aaataaaaat gtacaagatg ttattgaggc tatagttcta atagtatttg ttgtaattat
       61 aaacatcata gaggaatatc tcttatgaaa gagttaaaaa ttgaggattg ccaatttgtt
      121 tcggcaggct tgcacttgtt attgtaggag ctgttgctgg agctgcatat tatgttggga
      181 atggtatgat ttctggggaa aaaatgactt gggagagttt gggagcatca gctataggtg
      241 gggctattgg tggcggtatt ggagcaacaa tgaaagctgg tgcggtgaca gcgtcaacct
      301 tatctgcttt aggtggtggt atgggggagg gcttgtataa aagtacttct caaggtatca
      361 aaaatagtat tggtataaag gcgagttgca atcaatcagg ttcggattat ggtgatggat
      421 gtgattatca ataagagagt atat
//
LOCUS       DANMGB010000326          442 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.327, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000326 DANMGB010000000
VERSION     DANMGB010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.327"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>442
                     /locus_tag="PXG19_002630"
     CDS             <1..>442
                     /locus_tag="PXG19_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6067866.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANNHVH
                     VLSVDFNLEKYFCYYLNALNLPSMGLINGIAVPKLNQRNLNSILI"
BASE COUNT          154 a           50 c           89 g          149 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataatcat
      301 gttcatgtat tatcagttga ttttaatttg gaaaaatatt tttgttatta tttaaatgca
      361 ttaaatttac ctagtatggg attaattaac ggaatagctg tacccaaatt aaatcaaaga
      421 aacctaaact ctattttaat tg
//
LOCUS       DANMGB010000327          442 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.328, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000327 DANMGB010000000
VERSION     DANMGB010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.328"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(47..427)
                     /locus_tag="PXG19_002631"
     CDS             complement(47..427)
                     /locus_tag="PXG19_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067867.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
BASE COUNT          129 a           85 c           75 g          153 t
ORIGIN      
        1 taaggatagt atgattgcat ctctaggatc attttgaatc attggtctat tcattttgtg
       61 agcccttaat ccattctaaa attctctctc tgtcgaaaaa aagcatatta ttacagcaaa
      121 cacaagtgac aataacggct gttctcgctt tttggtctaa ccaatatttt gttccttccc
      181 gttcattgaa atgcaaagaa tgaaattcag gagctgcaaa tttcataact tcatcaggag
      241 atggctctat tcggtatgga atggttggaa caccgataat tttctctccg cataattccg
      301 taaaagtgtc atagccatcg tgtaaataat gttcttggct attacaaata gggcaagtta
      361 aattccgccc agtacgttgc gtgataaaat ccgcaaactg ttcaggttta atgcgtttat
      421 tattcatttt aacttccttt ct
//
LOCUS       DANMGB010000328          434 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.329, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000328 DANMGB010000000
VERSION     DANMGB010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.329"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>434
                     /locus_tag="PXG19_002632"
     CDS             <1..>434
                     /locus_tag="PXG19_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067868.1"
                     /translation="KISHCTLLNACSKALGFSGGFAGFQEDYLSNLTQFMEKHGLLYL
                     VDLTKQKYPVNDMCMTRSLALKKQDISERIFFSGKEIPKRIFTGFNFRYDMHLANGFR
                     IGNSLKTPYSDIGICEDINEALKNPSIKIDCRDGTIRSMADV"
BASE COUNT          157 a           62 c           79 g          136 t
ORIGIN      
        1 aaaaatttct cactgtactt tgttaaatgc ttgctcaaaa gctttaggat tttctggagg
       61 ctttgcaggg tttcaagaag attatttatc taatttgacg caattcatgg aaaaacatgg
      121 gctcttatat cttgtagatt taacaaaaca aaaatatcca gtaaatgata tgtgcatgac
      181 aaggagctta gctctgaaaa agcaagatat atctgaaaga attttcttta gcggaaagga
      241 aatccctaag agaatattta ctggatttaa tttccgatat gatatgcatt tagctaatgg
      301 ttttcgtatc ggaaattcct taaaaacccc atattctgac ataggtatat gtgaagacat
      361 aaatgaagca ttaaaaaatc catcaataaa aattgattgc cgtgatggca caatcagaag
      421 tatggcagat gtag
//
LOCUS       DANMGB010000329          420 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.330, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000329 DANMGB010000000
VERSION     DANMGB010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 420)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.330"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            66..>420
                     /locus_tag="PXG19_002633"
     CDS             66..>420
                     /locus_tag="PXG19_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Positively regulates the transcription of the
                     maltose regulon whose gene products are responsible for
                     uptake and catabolism of malto-oligosaccharides; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MalT"
                     /protein_id="HDL6067869.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSE"
BASE COUNT          141 a           64 c           79 g          136 t
ORIGIN      
        1 gtagtgagaa cacaaatggt ggatatatca tccctatttt gttatgagag aaaattgaat
       61 ttattatgtt aataccatca aaacttgttt gttcttttcg attacaaaac agcattcctc
      121 gaaaacgttt aattcaagaa ttagacaaat cttgcagtta tccggtcgta ttgataaatg
      181 caccggcagg ttatggcaaa accactctgg tttcccaatg gattgaaaat aaaaagaata
      241 tcggctggta tgcgttagat gaaggcgata ataattcaga tcgttttgcc acttatttta
      301 gtgcggcatt gcattcagca atcaatgaag aaatagacgt attgttagag gaaaatcgta
      361 aagctaattt attagcttta tttaatcaat tattgattaa agccgcggca ttttcagagc
//
LOCUS       DANMGB010000330          409 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.331, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000330 DANMGB010000000
VERSION     DANMGB010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.331"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            129..>409
                     /gene="raiA"
                     /locus_tag="PXG19_002634"
     CDS             129..>409
                     /gene="raiA"
                     /locus_tag="PXG19_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL6067870.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNE"
BASE COUNT          157 a           63 c           66 g          123 t
ORIGIN      
        1 aaagtgttaa gtagatcaaa tttttggaaa cttatttcat ttttcacttg aatttttgga
       61 gtgatgagca tattttggtt attagaatat caacggcaaa agccttaact aaacaagagg
      121 aaaatgttat gtcattaaat atttcaagca aacaaatgga cattacccct gcaatccgta
      181 ctcatattga ggagcgttta gctaagttag aaaaatacca cacccaattg ataaacccac
      241 attttatgct gataaaacaa cctaactcat tccaagttga agcaacaatt ggcacccctt
      301 taggtgattt agtcgctaaa gctgaacatg aagatttata tactgcaatt tttgatgtta
      361 agaagaaatt agaaggtcag ttaattaaac taaaagagaa aaatgaaca
//
LOCUS       DANMGB010000331          398 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.332, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000331 DANMGB010000000
VERSION     DANMGB010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.332"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..333)
                     /locus_tag="PXG19_002635"
     CDS             complement(<1..333)
                     /locus_tag="PXG19_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL6067871.1"
                     /translation="MALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPNEWFDIW
                     CQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDSDIVVDD
                     NLSEMYWLN"
BASE COUNT          143 a           56 c           63 g          136 t
ORIGIN      
        1 attaagccag tacatttctg ataaattatc atcaaccaca atatctgaat ctaaatatag
       61 tacacgttct tcgtccagat atggaataag gtaacgataa aaacccgttt cattaatatg
      121 ctctaaactc ttatattttg aaaaatctac acagactttc acaggaataa tttcactcga
      181 taataaggct aatttttggc accagatatc aaaccattca ttaggaaaag ttttctgaaa
      241 tagataaatc ttaagatgag aatgatgata acaaagcgat ttaattaagg tttcaacttg
      301 agtttgatag cctaaatcag ctgctaatgc aataactatt ggttggttga ttgattgatt
      361 gattgattga ttgattgatt gattgattga ttgattga
//
LOCUS       DANMGB010000332          392 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.333, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000332 DANMGB010000000
VERSION     DANMGB010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.333"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(3..>392)
                     /locus_tag="PXG19_002636"
     CDS             complement(3..>392)
                     /locus_tag="PXG19_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HDL6067872.1"
                     /translation="VDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDI
                     IRQVSIVTEKLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVN
                     LNGRELTEDELQMALFMIVMGAGSLGQ"
BASE COUNT          105 a           86 c           64 g          137 t
ORIGIN      
        1 gattattgcc cgagtgagcc tgctcccatc acaatcataa acagagccat ttgaagttca
       61 tcttcggtca gttcacgtcc gtttaaattc acttttccgt tatctatagt taattcaatc
      121 ttcacattgt tgtcatctac ttttcttaat ccgtactgtt caactcccgc attgagaaaa
      181 acagcatcaa cttgttgctt ggcaaatgct ttcgcctctt cttcgcctaa tttttctgta
      241 actattgaga cttggcgaat aatatcttcc gcatattgac ggttgatatt tgaagtgaat
      301 ttacttgttg aaagggcttg caataccgct tgcatattac caagattttg tgggtcaaat
      361 tgagccatat tcagtaataa agccaaatca ac
//
LOCUS       DANMGB010000333          392 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.334, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000333 DANMGB010000000
VERSION     DANMGB010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.334"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          138 a           59 c           63 g          132 t
ORIGIN      
        1 gtattatata aaatagcaaa tgaatacccg aatctactac cattattagc ctatgttaaa
       61 cctgagtact ggaaatgctc agacttattt agttatcaaa attgggtaag aagcagtgat
      121 aaacagccct ttattttgta tgctaaatac caagataaga tgttatgtga atcaaagggt
      181 caatggagat ggttaaaaaa acagtcgaga atagttgtag atcaatgttt tctacatgtt
      241 aatcaatggc agttactaac agaaattcaa attcccttca agatcccagt atgtgtcata
      301 tgtttcattc ttactaattt tagtatgatc agcagtgaat tagaacgttc tagacaacgt
      361 cgattacttt ctatttttat tcaatatatc ta
//
LOCUS       DANMGB010000334          383 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.335, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000334 DANMGB010000000
VERSION     DANMGB010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.335"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>383)
                     /locus_tag="PXG19_002637"
     CDS             complement(<1..>383)
                     /locus_tag="PXG19_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6067873.1"
                     /translation="AEDRNLINGSTPQKQMLKLMEEFGELCGGIARNNPEMIKDAIGD
                     LIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIKDRGKYSRFFGI
                     LHHLALINRFTLNDCLAHAYDQIKDR"
BASE COUNT          110 a           72 c           72 g          129 t
ORIGIN      
        1 cgatctttga tttggtcgta ggcgtgagcg aggcagtcat taagcgtaaa tctatttatt
       61 aaggctaaat ggtgtaatat gccaaaaaaa cggctatatt tacctctgtc tttaatgcgt
      121 tcaatatcat atagacaatg aacagcgacc gaaatatcaa atctgtaacc atttaatcta
      181 tgattttcaa attgtacagg gtaaataggt tgtttttctt gttttgcttt aataatacag
      241 acaacaatca aatccccaat cgcatcttta atcatttcag gattattgcg ggcaatgcct
      301 ccgcagagtt cgccaaactc ttccatcagt ttgagcattt gcttttgtgg ggttgagccg
      361 ttaattaaat tgcggtcttc cgc
//
LOCUS       DANMGB010000335          377 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.336, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000335 DANMGB010000000
VERSION     DANMGB010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.336"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            12..359
                     /locus_tag="PXG19_002638"
     CDS             12..359
                     /locus_tag="PXG19_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067874.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
BASE COUNT          118 a           65 c           65 g          129 t
ORIGIN      
        1 attggtatta tatgttcaga gaagaagcta ttgaatatca atcgaaaaaa tggaaaagca
       61 cagctgtact atttagcaga gttccagctt tggttgtctt ttccatttct ttctttatct
      121 ttactgcctt tattctattt attgtgtttg gtaattatac ccgccgtgaa acggttgtgg
      181 gtgaattagt gatgcaatct catccgattt tattatctgc cccaaaatcc ggctatatat
      241 ccgaaaatta tattcaacca catcagcagg taaaaaaaag ggcgatccgc tggttaaaat
      301 tacgctggat agaattacgc atagcgaaaa tattaatgtt aattctattc tttcgttgaa
      361 atcacaaatt caagcaa
//
LOCUS       DANMGB010000336          377 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.337, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000336 DANMGB010000000
VERSION     DANMGB010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.337"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            90..166
                     /locus_tag="PXG19_002639"
     tRNA            90..166
                     /locus_tag="PXG19_002639"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:124..126,aa:Arg,seq:ccg)
     gene            196..271
                     /locus_tag="PXG19_002640"
     tRNA            196..271
                     /locus_tag="PXG19_002640"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:229..231,aa:His,seq:gtg)
     gene            296..372
                     /locus_tag="PXG19_002641"
     tRNA            296..372
                     /locus_tag="PXG19_002641"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:330..332,aa:Pro,seq:tgg)
BASE COUNT           95 a           82 c           99 g          101 t
ORIGIN      
        1 tttttttaaa aagtgctaga caagggaaag tgaaatctat aatatacgcc tccgttgcga
       61 cgcattaagt tgaattgatg taaatcgaag cgttcgtagc tcagttggat agagcgttgg
      121 cctccggagc caaaggtcgc aagttcgaat cttgtcgagc gcgccagatg tcaatgcggc
      181 actatcaaca caatggtggc tatagctcag ttggtagagc cctggattgt gattccagtt
      241 gtcgtgggtt cgaatcccat tagccacccc attcaatact cttgtgagta tcagacggcg
      301 agtagcgcag cttggtagcg caactggttt gggaccagtg ggtcgtaggt tcaaatccta
      361 tctcgccgac caattta
//
LOCUS       DANMGB010000337          371 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.338, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000337 DANMGB010000000
VERSION     DANMGB010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.338"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>371
                     /locus_tag="PXG19_002642"
     CDS             <1..>371
                     /locus_tag="PXG19_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067875.1"
                     /translation="SELSLFNGKVLVLTGQAGSGKSHLLGDFVQKRQNSGKYSLLLLG
                     QDFTEKSNAWNQILSKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLW
                     NNQLNGLIELVSQYPNIGLVL"
BASE COUNT          128 a           49 c           73 g          121 t
ORIGIN      
        1 atctgaatta tcattattta atggtaaagt gcttgtttta actggtcaag ctggtagtgg
       61 aaaatctcat ttattgggtg attttgtcca aaaaagacaa aattctggaa agtattcttt
      121 gttgttattg gggcaggatt ttacagaaaa atccaatgct tggaatcaaa tcttatccaa
      181 acaattaaat cttaatatca cacccgaagt atttttatcc gcattagata gtatcggaga
      241 aatgcaaaaa gaacgggtta ttttagccat agacgcctta aatgagggtg aagggaaatc
      301 attatggaat aaccaactta atggattaat tgagttggta agtcaatatc caaatattgg
      361 actggttctg a
//
LOCUS       DANMGB010000338          363 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.339, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000338 DANMGB010000000
VERSION     DANMGB010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.339"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>363)
                     /locus_tag="PXG19_002643"
     CDS             complement(<1..>363)
                     /locus_tag="PXG19_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha2 family transposase"
                     /protein_id="HDL6067876.1"
                     /translation="QHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSP
                     HLEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYTVVVPNTQSATLL
                     PIIREKVKPDSLVYADFYR"
BASE COUNT           99 a           89 c           77 g           98 t
ORIGIN      
        1 tcgataaaaa tcggcgtaaa caaggctgtc tggcttcact ttctcccgaa taatcggcaa
       61 aagtgtggca gattgcgtat ttggtacgac aacggtataa accttgtcat cacgttttaa
      121 cagcccaaat acggcagttt tgcctgcggc accacaccct cgtttacctt tgcgagcacc
      181 accgaaataa ctttcgtccg cttcaatttc accctcaaac atttccagat gagggctatg
      241 ttgatagatg agcaatcgca aacggtgaaa gtaataggca gcggtggttt tgtttacatt
      301 caccaactca gccgctgttc gagcagtgac acctgctaca aacagttcaa tgagtttatg
      361 ttg
//
LOCUS       DANMGB010000339          359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.340, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000339 DANMGB010000000
VERSION     DANMGB010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.340"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            108..350
                     /locus_tag="PXG19_002644"
     CDS             108..350
                     /locus_tag="PXG19_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067877.1"
                     /translation="MTKKHYCTGWRSAPANINSCCHQHDRDYGIRGTVTRADADKRLR
                     ECMIKNGNPIRAWLFWLVVRAFGWRFYKNKEIKIEK"
BASE COUNT          118 a           57 c           79 g          105 t
ORIGIN      
        1 atttaaaagt aggtgacatt gttgatttgc agtataaaac aacgcatgag ttgacattac
       61 tgtcagactc atttttatct caaatttatg tgactcagga gttttaagtg actaaaaaac
      121 actactgcac aggctggcgt agcgcaccag ccaatatcaa cagttgctgt catcaacatg
      181 accgagacta cggcattcgt ggcacagtaa cacgagcaga tgctgataaa cgcttacgtg
      241 agtgtatgat taaaaatggc aatccaatta gggcttggtt attttggcta gttgtgagag
      301 cttttggttg gcgtttttat aaaaataagg agattaagat tgagaaataa agataatac
//
LOCUS       DANMGB010000340          356 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.341, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000340 DANMGB010000000
VERSION     DANMGB010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.341"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>356
                     /locus_tag="PXG19_002645"
     CDS             <1..>356
                     /locus_tag="PXG19_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6067878.1"
                     /translation="QLRTDFLDPFFGLLGWDITNSKNKLTSEREVIVEEPLKEKVSEN
                     VKKPDYTFRFNSQRKFFVEAKKPSVKIKTDPLPAHQVRRYGFTAKLSISVLSNFEYLA
                     IYDCSEIVDVQQDALY"
BASE COUNT          132 a           55 c           56 g          113 t
ORIGIN      
        1 ctcagttaag aactgacttt ttagaccctt tctttggttt acttggatgg gatataacta
       61 actcaaagaa taaactcaca tctgaaagag aagtgattgt tgaagaacca ctaaaagaaa
      121 aagtttcaga aaatgtaaaa aaaccagatt atacatttag attcaattct caaagaaagt
      181 tttttgttga agctaaaaag ccaagtgtca aaatcaagac tgacccttta cctgctcatc
      241 aggtaagacg atatggcttc acagcaaaat taagtatttc tgttttatct aattttgaat
      301 atcttgctat atatgattgt tcagaaatag ttgatgtaca acaagatgct ctatac
//
LOCUS       DANMGB010000341          354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.342, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000341 DANMGB010000000
VERSION     DANMGB010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.342"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            31..107
                     /locus_tag="PXG19_002646"
     tRNA            31..107
                     /locus_tag="PXG19_002646"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65..67,aa:Ile,seq:gat)
     gene            164..239
                     /locus_tag="PXG19_002647"
     tRNA            164..239
                     /locus_tag="PXG19_002647"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:197..199,aa:Ala,seq:tgc)
BASE COUNT          107 a           75 c           90 g           82 t
ORIGIN      
        1 aagaagacaa aaaaccgaag gtcatccgtt gggtctgtag ctcaggtggt tagagcgcac
       61 ccctgataag ggtgaggtcg gtggttcaag tccactcaga cccaccactc agaaggcaag
      121 cgaaagcgaa gcgactatga gtgaagaaaa cggaagatga aatggggata tagctcagct
      181 gggagagcgc ctgccttgca cgcaggaggt cagcggttcg atcccgctta tctccaccaa
      241 tcatcgtgac tttatcatca tacctaagat tacaagcggt taaaaatacc ggattatttg
      301 caattttagg tatgatgata ggcgaaagcc attatctttg ttctttaaca atat
//
LOCUS       DANMGB010000342          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.343, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000342 DANMGB010000000
VERSION     DANMGB010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.343"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>338
                     /locus_tag="PXG19_002648"
     CDS             <1..>338
                     /locus_tag="PXG19_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6067879.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANMGB010000343          337 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.344, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000343 DANMGB010000000
VERSION     DANMGB010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.344"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            complement(<1..>337)
                     /locus_tag="PXG19_002649"
     CDS             complement(<1..>337)
                     /locus_tag="PXG19_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL6067880.1"
                     /translation="IARMDADDISLPTRLSEQILYLEENHLDLCGCNALLFSEHGNLG
                     LTNKLNSHEALEKLMVAGDIGIIHPTFLARRKVFVESGGYNPLALHAEDMEFIAHILS
                     MGFRLGNNPK"
BASE COUNT          117 a           72 c           44 g          104 t
ORIGIN      
        1 ccttaggatt attccctaat ctaaatccca ttgataaaat atgggcaata aattccatat
       61 cttccgcatg taaagctaag ggattatacc ctccagattc aacaaatact tttctccttg
      121 ctaaaaaagt agggtgaatt attccaatat caccagccac cataagcttt tctaaagcct
      181 catgactatt caacttattt gtaagaccaa ggttgccatg ttcagaaaaa agcaaagcat
      241 tacaaccgca taagtctaaa tggttttctt ctaaatataa aatttgctct gacaatctag
      301 taggtaaaga tatatcatca gcatccattc tcgctat
//
LOCUS       DANMGB010000344          328 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.345, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000344 DANMGB010000000
VERSION     DANMGB010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.345"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          114 a           48 c           64 g          102 t
ORIGIN      
        1 tggcattatt tacgttatca atcacggatt gaggtattgt ataaaatagc aaatgaacac
       61 ccgaatctac taccattatt agcctatgtt aaacctgagt actggaaatg ctcggactta
      121 tttagttatc aaaattgggt aagaagccgt gataaacagc cttttatttt gtatgctaaa
      181 tgccaagata agatgttatg tgaatcaaag gggcaatgga gatggttaaa aaaacagtcg
      241 agaatagttg tagatcaatg ttttctacat gttaatcaat ggcagttatt aacagaaatt
      301 caaatgcctt tcaagatccc agtatgtg
//
LOCUS       DANMGB010000345          325 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.346, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000345 DANMGB010000000
VERSION     DANMGB010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.346"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          119 a           44 c           61 g          101 t
ORIGIN      
        1 taatcttcct ttacttgtac aaacttatat aaaagaaggt gaggatgcgg agtatcacaa
       61 aagatataaa tgcaaaataa gaaaaccatg gtataaagtt ccatcggttt attcaactaa
      121 cataggaatg ctgaaaagaa gtcatgaagc accaaaacta atattgaata aattgggggc
      181 ttatactacc gatactgcgt atcgtataaa gtcaaataaa tttcaagatg agattcttgt
      241 gtgctgtttc ctaaatccat taactatgat tttatctgag ttaaatggaa ggttttatgg
      301 tggaggcgta ttagaattag ttcct
//
LOCUS       DANMGB010000346          315 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.347, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000346 DANMGB010000000
VERSION     DANMGB010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.347"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>315
                     /locus_tag="PXG19_002650"
     CDS             <1..>315
                     /locus_tag="PXG19_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6067881.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMK"
BASE COUNT           95 a           53 c           76 g           91 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaag
//
LOCUS       DANMGB010000347          306 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.348, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000347 DANMGB010000000
VERSION     DANMGB010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.348"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>306
                     /locus_tag="PXG19_002651"
     CDS             <1..>306
                     /locus_tag="PXG19_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL6067882.1"
                     /translation="SRQYCDAYHLLENVARWEKPKVYGVARKMDRTSLKSDYCMIAAT
                     KAFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDIMKILSKKGKVIVFESDYK"
BASE COUNT          119 a           32 c           64 g           91 t
ORIGIN      
        1 ttcaagacaa tattgtgatg catatcattt acttgaaaat gtggcacgat gggaaaaacc
       61 taaagtttat ggtgttgcaa gaaagatgga tagaacttcg cttaaaagtg attattgtat
      121 gattgcagct acaaaagcat ttgaggagct tattgaaaat gctgatgcaa aatatatttt
      181 gctttcatat aacaatatgt cagacaaggg aaatgataga tccaatgcga aaatatcgga
      241 tgaagatatt atgaaaattc ttagcaaaaa gggaaaagta attgtatttg aatcggatta
      301 taagag
//
LOCUS       DANMGB010000348          302 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.349, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000348 DANMGB010000000
VERSION     DANMGB010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.349"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
BASE COUNT          104 a           61 c           38 g           99 t
ORIGIN      
        1 tatttatttc ctttaccacc aatccacgaa caacatcgca ttgttcaaaa aattgaacaa
       61 ttatttgcag agattgaaaa attgtaggag tcatcatcgc tttcttgggc gtgttggata
      121 cgccctacag tcactaaatt attgatcttt tatcatatcg gttttcaacc aacctaaaag
      181 gaaacctata tgatccatct atttgaaaag caccttaatc aatctaatct tgctgaaaat
      241 acccaatcag cttatctttt tgcggtaaaa caatatcaca aaaaatttga tcagttatct
      301 aa
//
LOCUS       DANMGB010000349          295 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.350, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000349 DANMGB010000000
VERSION     DANMGB010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.350"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..>295
                     /locus_tag="PXG19_002652"
     CDS             <1..>295
                     /locus_tag="PXG19_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL6067883.1"
                     /translation="PLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFR
                     IVKRLYRKGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          107 a           42 c           53 g           93 t
ORIGIN      
        1 cctttagaca tcaaaattat tgatgagctt ggagatgata aagcagttat tgcacaaaaa
       61 gaaattcaag cagaaattgc tttgtgtaaa cgtatattca aacaattaga ttggtctgct
      121 gttgatttta gaattgttaa gcgtctgtac aggaaaggat tttcagaaaa tgaaattgct
      181 gttgcacttg tcagatttac tgattttgaa gacagacatt gtgattcaca tgattatttg
      241 acaagaacaa tcacaaaagc cattcaaaac tatcaacaat gctcaaaagc ttgtt
//
LOCUS       DANMGB010000350          295 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.351, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000350 DANMGB010000000
VERSION     DANMGB010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.351"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            22..>295
                     /locus_tag="PXG19_002653"
     CDS             22..>295
                     /locus_tag="PXG19_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6067884.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCN"
BASE COUNT          111 a           44 c           52 g           88 t
ORIGIN      
        1 gaaatttgca ttggttagga tatgaaaaac atagaaacaa aatggttaga agatttctta
       61 acgctagaag aatgtcgcca tttttctcag gcagcagaaa aaagaaattt gtcacaatct
      121 gcatttagca gacgtatttt agctttagaa gaagttgtgg gagtgaagtt atttgatcgt
      181 acctctattc cattacaact cacagaacaa ggtaagctat ttcattcaca aacgcgaaac
      241 ttattacaac aattacagaa taatctagat gaattattag gacataattg taact
//
LOCUS       DANMGB010000351          291 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.denovo.352, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000351 DANMGB010000000
VERSION     DANMGB010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.denovo.352"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..285
                     /locus_tag="PXG19_002654"
     CDS             <1..285
                     /locus_tag="PXG19_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6067885.1"
                     /translation="LSRKTSRKIIPEQVNFDINLPIYIPLFLSDKTAKIQAVWELEQE
                     NGERDAGAVKRNRIQFRYLPEGVHKLTLIVGTPLLSKGSKVYQCLIKVNK"
BASE COUNT          105 a           41 c           56 g           89 t
ORIGIN      
        1 ttatcgagaa aaacatcgcg taaaattatt cctgagcaag ttaattttga cattaacttg
       61 cctatctata tcccgctgtt tttatcagat aagacagcga aaattcaagc agtatgggag
      121 ttagaacaag aaaatggtga gcgtgatgct ggcgctgtaa agcgaaatcg tattcagttt
      181 agatacttgc cagaaggggt acataaatta acattaattg ttggtacgcc tttattatca
      241 aaaggaagta aggtttatca atgcctaatt aaagttaata aataatatta a
//
LOCUS       DANMGB010000352         5027 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica strain M. haemolytica isolate
            OH43068PPY10006 SAMN14970584-rid16719193.guided.164, whole genome
            shotgun sequence.
ACCESSION   DANMGB010000352 DANMGB010000000
VERSION     DANMGB010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14970584
            Sequence Read Archive: SRR11811143
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574359.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574359.1
            Genome Coverage       :: 125x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:11:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,659
            CDSs (total)                      :: 2,605
            Genes (coding)                    :: 2,543
            CDSs (with protein)               :: 2,543
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 36 of 62
            Pseudo Genes (incomplete)         :: 17 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5027
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14970584-rid16719193.guided.164"
                     /strain="M. haemolytica"
                     /isolate="OH43068PPY10006"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /country="USA"
                     /collection_date="2018-01-25"
     gene            <1..650
                     /locus_tag="PXG19_002655"
     CDS             <1..650
                     /locus_tag="PXG19_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6067886.1"
                     /translation="KAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKET
                     IEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEG
                     TATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQIS
                     STVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            846..2255
                     /locus_tag="PXG19_002656"
     CDS             846..2255
                     /locus_tag="PXG19_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6067887.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            2401..2874
                     /gene="gpt"
                     /locus_tag="PXG19_002657"
     CDS             2401..2874
                     /gene="gpt"
                     /locus_tag="PXG19_002657"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6067888.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            2987..3610
                     /gene="gmk"
                     /locus_tag="PXG19_002658"
     CDS             2987..3610
                     /gene="gmk"
                     /locus_tag="PXG19_002658"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6067889.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            3700..>5027
                     /locus_tag="PXG19_002659"
     CDS             3700..>5027
                     /locus_tag="PXG19_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL6067890.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAIL"
BASE COUNT         1531 a          959 c         1126 g         1411 t
ORIGIN      
        1 aaaaagcggc gaaagagaaa gcggaagcgg agcgtttagc agcagaaaaa gaagtagatc
       61 ctatagctat tattaaagca aaaggtattg atgatacaaa ttacggctta aaacttggta
      121 atagtaaaga aactattgag ggtaaagtca cagtcagaac acagagttat ttatataatc
      181 agccatattc tgtagtaaca gcacaagcag ttcaaagaaa tggctgggaa aacggtaatt
      241 atattgataa agttgatgga acagttacag ttaaaggatt gaaaacagag aaattaccaa
      301 cagagggtac tgcaacatat tcaggaaaag catttaacca cgatggagct aaaggtttta
      361 atggtggtga tctaacctat aatgttaatt tctctaagcg taccggttca ggtagagttg
      421 agggagaatt tggaaactta atcgtattag aagaggggac gattaataat actcagattt
      481 cttcaacagt acatggcaat aatcctttaa acctttctgg aaaatataca gtcgaatttt
      541 tcggtaaaaa tgcagaggaa attgccggtg aaattcagac aaaagcaaat cttactgggg
      601 aagtgagtaa ttttggactt gccggcactc gtggcgatat ccaaaaataa ccttttctaa
      661 cgttcaatgc cgtttaacga aaaattaaac ggcatttgtc ttgatattgc ttgtagatac
      721 cataagacac aatagtttag atttcaattt acagcttcta ataaccctct cccacaaggg
      781 gagagagtga taaatcccgt agaggcgaac atataggtcc gcccctacca attttcttta
      841 tctttatgaa aaaatatccc cttttatttt cgctgttcag ccccgttgta tgggcagaaa
      901 aggtgattga acacaacact gacccgattt cctttgagcg tcagccgcaa gcggttaaat
      961 ttgagcaaaa tgttgtaaaa aattcacaaa aaccgaccgc ttatcagcct gcgtattcag
     1021 tcaatcagaa tgttgaacag caaattaacc aagcgattct cagccaagat tgggcaacgc
     1081 ttgaaccgct tttaagccgt tatccgcaaa ctgaaaattt tgacccgttg ttgtggcact
     1141 atgcgcaagc cgcacttgcc tatgcgaaaa aagatcatca aaccgcagtt tttcactatc
     1201 gccaactgtt agctaagccc ccgagtttgg tttaccctcg ttttgatttg gcgttgattt
     1261 tggcagaaga tcagcaattt cgtgcggcag agcaggaatt taaggctatt caagcccatt
     1321 taccgccgga acttgctaaa attgcccgca atactcaagt ccaaattgct gaaaatgagg
     1381 cgtggcagcc cgatttttat ctgcaatata cccaaacaga taacgtgaat aatgcctcat
     1441 cttcgccgat tgtgaatgta aatgggcgga ttttccgcaa aaatgcagac agtttgccac
     1501 aatcagcaaa aggcgtgcgt tatggcttag ggttgagtaa attgcacaac gtgaaaggca
     1561 atcattttgt cggtttaacg ctcaattata gcgggattta ctattgggat aaccgagatt
     1621 accgtgagca atccgtatcc gtttcgccga attatagcta ccgcaccgtc gcttatcggc
     1681 tgactttttc gccttttatt gagcaaaatt ggctggggag tagccgttat aatgttcaat
     1741 ttggggcaac actcaacggt ttgcgttacc ttaattcgca atggttggtg tcggggagtt
     1801 ttacccattt gcaaaaacgg tattttgagg agctaaccgc aagccgttat aacagctatc
     1861 agcaccaact cagtggcggt gtgcagtggc aagcggtcaa aaatgggcgg ttttttgcaa
     1921 atttagacgg cgtgcgtgaa attgcacggg aaaaagcaca aagctcgaat aagtggctgg
     1981 ctcgagtggg ggcggttttt caaggcgaac gctgggcaac gcaggcaagt atcggctttg
     2041 gcaagcgata ttttgccgac aagcactatt tgtttggcta taagcggtta gacacggaat
     2101 atcaagccaa tttagcggtt tggaaccgca cttggcattg gcagggcatt gtgccgaagc
     2161 tgaatttccg ttatcaaaaa attgacagca atattgctga tttttactct cgccaaaaca
     2221 aggaagtctt tttcacttta gaaaagctat tttagtgttg gttttttgtg ctaagcatac
     2281 gattgcgtag ctgccggcac aaaaaaataa atgaaatgat ggcgaaaaaa gcattttcgg
     2341 gttatcctag tgcaattttt tatatcgggg tagcccccaa ttttatatta ggttgtttct
     2401 atgagtgaaa aatacacaaa tgaaaaatat gtcgtgacgt gggatatgtt ccatatgcac
     2461 gctcgcaagt tggcagaaaa tttattacct gccacacagt ggaaagggat tattgcggtg
     2521 agccgtggcg gcttgtttcc ggcagccgtt ttagcacgtg agttgggtat tcgccacgta
     2581 gaaacagtgt gcattgccag ctacgatcac gatagccaag gtgagttaaa tgtgttacac
     2641 gcagccgata ccgatggcga aggctttatt gtggtagatg atttagtgga taccggcaac
     2701 acggcaaaag aaattcgcag aatgtacccg aaagctcgtt ttgtaaccgt gtttgcgaaa
     2761 ccgcacggtg caccgttggt tgatgattat gtgattgata ttccacaaga aacgtggatt
     2821 gagcagcctt gggatttagg cattaccttc gttcagcctt tggcacgtag ataattttgt
     2881 gtaatggaca atgaaagttg tccattattt tttatttatt cctatgaaat gtaggggcga
     2941 atcatcattc gccctattcc caaaatcaaa taggtatata caaataatga gtttaggcaa
     3001 tctttatatt atttctgccc caagtggagc aggaaaatct tccttaatta acgccttgtt
     3061 ggcggattta ccccgttcgg aagtacagct ttcgatttca cacactaccc gtcagcctcg
     3121 tccggcagaa caggacggcg tgcattatta tttcacttcg cacgatgagt ttaagcagct
     3181 gattgagcaa gggtattttt tagaatgggc ggaggtgttt ggcaattatt acggcacatc
     3241 attgccgatg attgaacgta gcctagagca gggcattgat gtctttttgg atattgactg
     3301 gcaaggggct agacaaattc gggaaaaagt gccgaatgtg aaaaccgttt ttattttgcc
     3361 accgtcaaaa acagaattgg aaaaacgttt aatcgggcgt gggcaagatt ccgctgaaac
     3421 cattgccaaa cgtatggcag aggcggtgtc ggaaatgaac cattacaatg agttcgatta
     3481 tgtgattatt aatgatgatt tccaacaggc attggcagag ctaaaagcga ttttaattgc
     3541 cgagcgtttg agcttaggtt cgcaacaaat tcgtcatcag catttgatta ctgatttgtt
     3601 aaataattaa atgaacagtt gttcatttaa ctggaaaggc aatctgtttt tgggtagaat
     3661 acgcccattt tcccctcttt attttcaaaa ggaaatgtaa tgaaactttc aaaattagca
     3721 ttttctgtgg cgttggctct aaccgtaacg gcttgtacca cagggaatat gagcaatgac
     3781 gggactttgc aacaagcaca gcaaacctat caaagctatg atgaaattac caaacaatat
     3841 caaattaacg agcaatggtg gcaaggctat acggatgcgg aattaaaccg tgtggttgat
     3901 ttagccatca aaaataacct tgatttagcc aaaagcggaa ttgcagtcaa taaagccttg
     3961 tataacgcta atttagtagg ggcaaattta gtgccaacct ttagtggttc aggttctgtt
     4021 tctgcggcta aaggtttagg ttcggcttct tcaaataatg tttcgaccgg tgtttcaaca
     4081 accgcagctc aagctgcatt taatttaagt tatactgtgg atttatggcg acgtttagcc
     4141 gataccgcca gtgcggcaga atggacgcat aaagccacca ttgaagactt aaaagctacc
     4201 cgtttatcta ttattaatgc ggttgtgact acttactacc agttagctta ctatcgtgat
     4261 gcgattcgta ttaccgaaga gagcattcgc cattatgagc aaatcagccg tattttaact
     4321 aacaaaatga atgccggtgc gattgatagt ttagcggttg atcaggctca acaagcggtc
     4381 ttaaacgcca gaaatagtgt aattgatctg aaaaccaacc aaaaaattgc cgagcaaaca
     4441 ttacgcaatt tgttaaatgt tcagccaaat actccgctta acattcgtta cccgaatatt
     4501 atgagcgtga aattgcaagg ggtagattta aatgtgccag tgtcagccat tgctaatcgc
     4561 cctgatgtag taggctcgtt acaacgctta caaagtgcat ttaaaacctt aaccgcaacc
     4621 gagaaaagct ggttcccaac cttaaccatc ggtggttcta ttaccggtag tgcaaccaat
     4681 atcggcaatg tggcagataa ccctgtgggt aacggcttaa ttaaattgga tttaccgttc
     4741 ttagattgga atcgggttaa aaataacgta aaaatttctg aaacggatta tgtgactgcc
     4801 cgtttaaact atgagcaaaa aattacctca gccttaaatg aaattgaccg ttattattac
     4861 agttatacgc agtcgagaag ctcgttaaaa atccttcaag ataccaatgc gaaaaataaa
     4921 cgtatcagtt catactataa aaaccgttat gaacaagggg tgtcggagtt ccgtgagtgg
     4981 attaccgcac tgaataccga gcttaattct cagttggcga ttttaaa
//
